Uses of Class
mgui.geometry.neuro.mesh.SampleRay

Packages that use SampleRay

Package	Description
mgui.geometry.neuro.mesh

Uses of SampleRay in mgui.geometry.neuro.mesh

Method parameters in mgui.geometry.neuro.mesh with type arguments of type SampleRay

Modifier and Type	Method	Description
static VectorSet3DInt	NeuroMeshFunctions.generateRayShapes(java.util.ArrayList<SampleRay> rays, java.lang.String name)	Generates a vector 3D set from a list of sample rays; adds sample data to shapes.
protected static java.util.ArrayList<java.lang.Integer>	NeuroMeshFunctions.getBottomPointingRays(java.util.ArrayList<SampleRay> rays, float bottom_z)	Returns a list of indices corresponding to rays which project to a point with a z coordinate below bottom_z.
static Mesh3D[]	NeuroMeshFunctions.getControlPointMeshes(int[][] A, java.util.ArrayList<SampleRay> rays, ScalpAndSkullModelOptions options)	Generates four meshes corresponding to the average control points.
static int[][]	NeuroMeshFunctions.getRayControlPoints(java.util.ArrayList<SampleRay> rays)	Determines a set of control points which can be used to constrain the search for skull and scalp surfaces.
static void	NeuroMeshFunctions.getRays(ScalpAndSkullModelOptions options, java.util.ArrayList<SampleRay> rays_1, java.util.ArrayList<SampleRay> rays_2, ProgressUpdater progress)	Generates a set of sample rays from an instance of ScalpAndSkullModelOptions, including a brain hull surface and a T1-weighted brain image.
static void	NeuroMeshFunctions.getRaysBlocking(ScalpAndSkullModelOptions options, java.util.ArrayList<SampleRay> rays_1, java.util.ArrayList<SampleRay> rays_2, ProgressUpdater progress)	Generates and fills three sets of sample rays based upon the parameters in options.
static Mesh3D[]	NeuroMeshFunctions.getSkullAndScalpMeshes(int[][] A, java.util.ArrayList<SampleRay> scalp_rays, java.util.ArrayList<SampleRay> full_rays, ScalpAndSkullModelOptions options)	Generates meshes, given the control points; array is ordered as: inner skull outer skull scalp
static Mesh3D[]	NeuroMeshFunctions.getSkullAndScalpMeshes(int[][] A, java.util.ArrayList<SampleRay> scalp_rays, java.util.ArrayList<SampleRay> full_rays, ScalpAndSkullModelOptions options, ProgressUpdater updater)	Generates meshes, given the control points; array is ordered as: inner skull outer skull scalp control_point_A1 control_point_A2 control_point_A3 control_point_A4
static Mesh3D[]	NeuroMeshFunctions.getSkullAndScalpMeshesBlocking(int[][] A, java.util.ArrayList<SampleRay> scalp_rays, java.util.ArrayList<SampleRay> full_rays, ScalpAndSkullModelOptions options, ProgressUpdater updater)	Generates meshes, given the control points; array is ordered as: inner skull outer skull scalp control_point_A1 control_point_A2 control_point_A3 control_point_A4 ..and 4 additional meshes for subject control points
static boolean	NeuroMeshFunctions.writeRaysToFile(java.util.ArrayList<SampleRay> rays, java.lang.String file_prefix, int precision)	Writes rays to two tab-delimited text files, one with its vectors:

Constructors in mgui.geometry.neuro.mesh with parameters of type SampleRay

Constructor	Description
SampleRay(SampleRay ray)