Uses of Class
mgui.interfaces.graphs.AbstractGraphNode

Packages that use AbstractGraphNode

Package	Description
mgui.geometry	Provides 2D and 3D geometry representations and utilities for all shapes used in ModelGUI.
mgui.graphs.networks	Classes representing network graphs.
mgui.interfaces.graphs	Provides an interface for user interaction with graph objects.
mgui.interfaces.graphs.layouts	Specifies layouts for 2D and 3D graph rendering.
mgui.interfaces.graphs.util
mgui.interfaces.shapes	This package provides interfaces for user interaction with shapes and shape models.
mgui.interfaces.shapes.graphs
mgui.interfaces.shapes.graphs.util
mgui.interfaces.shapes.util
mgui.interfaces.tools.graphs
mgui.io.domestic.graphs.xml
mgui.neuro.graphs

Uses of AbstractGraphNode in mgui.geometry

Methods in mgui.geometry that return types with arguments of type AbstractGraphNode

Modifier and Type	Method	Description
java.util.ArrayList<AbstractGraphNode>	Graph2D.getJungVertices()
java.util.ArrayList<AbstractGraphNode>	Graph3D.getJungVertices()

Constructor parameters in mgui.geometry with type arguments of type AbstractGraphNode

Constructor	Description
Graph2D(InterfaceAbstractGraph graph, java.util.HashMap<AbstractGraphNode,org.jogamp.vecmath.Point2f> vertices)
Graph3D(InterfaceAbstractGraph graph, java.util.HashMap<AbstractGraphNode,org.jogamp.vecmath.Point3f> nodes)

Uses of AbstractGraphNode in mgui.graphs.networks

Subclasses of AbstractGraphNode in mgui.graphs.networks

Modifier and Type	Class	Description
class	AbstractNetworkGraphNode	Represents a node in a network graph.

Methods in mgui.graphs.networks with parameters of type AbstractGraphNode

Modifier and Type	Method	Description
boolean	AbstractNetworkGraph.addGraphNode(AbstractGraphNode node)
boolean	AbstractNetworkGraph.removeGraphNode(AbstractGraphNode node)

Uses of AbstractGraphNode in mgui.interfaces.graphs

Subclasses of AbstractGraphNode in mgui.interfaces.graphs

Modifier and Type	Class	Description
class	DefaultGraphNode	Default implementation of a Graph in modelGUI.

Fields in mgui.interfaces.graphs declared as AbstractGraphNode

Modifier and Type	Field	Description
protected AbstractGraphNode	AbstractGraphEdge.from
protected AbstractGraphNode	AbstractGraphEdge.to

Fields in mgui.interfaces.graphs with type parameters of type AbstractGraphNode

Modifier and Type	Field	Description
protected java.util.HashMap<java.lang.String,AbstractGraphNode>	DefaultGraph.nodes
protected edu.uci.ics.jung.graph.ObservableGraph<AbstractGraphNode,AbstractGraphEdge>	InterfaceGraphDisplay.observable_graph
protected edu.uci.ics.jung.visualization.VisualizationViewer<AbstractGraphNode,AbstractGraphEdge>	InterfaceGraphDisplay.viewer
protected java.util.HashMap<java.lang.Integer,AbstractGraphNode>	InterfaceAbstractGraph.xml_nodes

Methods in mgui.interfaces.graphs that return AbstractGraphNode

Modifier and Type	Method	Description
AbstractGraphNode	AbstractGraphEdge.getFrom()
AbstractGraphNode	AbstractGraphEdge.getTo()
AbstractGraphNode	DefaultGraph.getVertexByLabel(java.lang.String label)	Returns the node corresponding to label.

Methods in mgui.interfaces.graphs that return types with arguments of type AbstractGraphNode

Modifier and Type	Method	Description
org.apache.commons.collections15.Factory<AbstractGraphNode>	DefaultGraphNode.getFactory()
edu.uci.ics.jung.algorithms.layout.Layout<AbstractGraphNode,AbstractGraphEdge>	InterfaceGraphDisplay.getGraphLayoutInstance()
java.util.ArrayList<AbstractGraphNode>	InterfaceAbstractGraph.getNodes()
edu.uci.ics.jung.visualization.VisualizationViewer<AbstractGraphNode,AbstractGraphEdge>	InterfaceGraphDisplay.getViewer()	Gets the VisualizationViewer for this window.

Methods in mgui.interfaces.graphs with parameters of type AbstractGraphNode

Modifier and Type	Method	Description
boolean	InterfaceAbstractGraph.addEdge(AbstractGraphEdge edge, AbstractGraphNode v1, AbstractGraphNode v2, edu.uci.ics.jung.graph.util.EdgeType edgeType)	Overridden to set up edge properly.
boolean	InterfaceAbstractGraph.addEdge(AbstractGraphNode v1, AbstractGraphNode v2, edu.uci.ics.jung.graph.util.EdgeType edgeType)
boolean	DefaultGraph.addGraphNode(AbstractGraphNode node)	Adds a node to this graph.
boolean	DefaultGraph.addVertex(AbstractGraphNode vertex)
int	AbstractGraphNode.compareTo(AbstractGraphNode node)
boolean	DefaultGraph.removeGraphNode(AbstractGraphNode node)	Removes the given node.
void	AbstractGraphEdge.setFromNodes(AbstractGraphNode from, AbstractGraphNode to)
void	AbstractGraphEdge.setVertices(AbstractGraphNode from, AbstractGraphNode to)

Method parameters in mgui.interfaces.graphs with type arguments of type AbstractGraphNode

Modifier and Type	Method	Description
void	InterfaceGraphDisplay.handleGraphEvent(edu.uci.ics.jung.graph.event.GraphEvent<AbstractGraphNode,AbstractGraphEdge> evt)	Handle a graph event on the current ObservableGraph.

Constructors in mgui.interfaces.graphs with parameters of type AbstractGraphNode

Constructor	Description
AbstractGraphEdge(AbstractGraphNode from, AbstractGraphNode to)
DefaultGraphEdge(AbstractGraphNode from, AbstractGraphNode to)
DefaultGraphEdge(AbstractGraphNode from, AbstractGraphNode to, double weight)
DefaultGraphEdge(AbstractGraphNode from, AbstractGraphNode to, edu.uci.ics.jung.graph.util.EdgeType type)

Uses of AbstractGraphNode in mgui.interfaces.graphs.layouts

Classes in mgui.interfaces.graphs.layouts with type parameters of type AbstractGraphNode

Modifier and Type	Class	Description
class	Coordinate3DLayout<V extends AbstractGraphNode,E extends AbstractGraphEdge>	Layout for graph nodes in 3D, specifying fixed positions in R3.
class	CoordinateLayout<V extends AbstractGraphNode,E extends AbstractGraphEdge>	Layout for AbstractGraphNodes, which projects the 3D locations of these nodes onto a given plane.

Uses of AbstractGraphNode in mgui.interfaces.graphs.util

Classes in mgui.interfaces.graphs.util with type parameters of type AbstractGraphNode

Modifier and Type	Class	Description
class	StaticLocationTransformer<V extends AbstractGraphNode>	Simple transformer returns the static location of a graph vertex.

Methods in mgui.interfaces.graphs.util with type parameters of type AbstractGraphNode

Modifier and Type	Method	Description
static <T extends AbstractGraphNode> org.apache.commons.collections15.Factory<AbstractGraphNode>	GraphFunctions.getNodeFactory(java.lang.Class<T> node_class, java.lang.String prefix, boolean add_ids, boolean has_locations)

Methods in mgui.interfaces.graphs.util that return AbstractGraphNode

Modifier and Type	Method	Description
AbstractGraphNode	GraphFunctions.NodeFactory.create()

Methods in mgui.interfaces.graphs.util that return types with arguments of type AbstractGraphNode

Modifier and Type	Method	Description
static org.apache.commons.collections15.Factory<AbstractGraphNode>	GraphFunctions.getNodeFactory()
static <T extends AbstractGraphNode> org.apache.commons.collections15.Factory<AbstractGraphNode>	GraphFunctions.getNodeFactory(java.lang.Class<T> node_class, java.lang.String prefix, boolean add_ids, boolean has_locations)
static org.apache.commons.collections15.Transformer<AbstractGraphNode,java.lang.String>	GraphFunctions.getVertexLabeller()	Returns a Transformer object which produces a label for a vertex.

Methods in mgui.interfaces.graphs.util with parameters of type AbstractGraphNode

Modifier and Type	Method	Description
void	GraphFunctions.GraphNodeLabelRenderer.labelVertex(edu.uci.ics.jung.visualization.RenderContext<AbstractGraphNode,AbstractGraphEdge> rc, edu.uci.ics.jung.algorithms.layout.Layout<AbstractGraphNode,AbstractGraphEdge> layout, AbstractGraphNode v, java.lang.String label)

Method parameters in mgui.interfaces.graphs.util with type arguments of type AbstractGraphNode

Modifier and Type	Method	Description
boolean	GraphFunctions.ArrowVisibility.evaluate(edu.uci.ics.jung.graph.util.Context<edu.uci.ics.jung.graph.Graph<AbstractGraphNode,AbstractGraphEdge>,AbstractGraphEdge> context)
boolean	GraphFunctions.EdgeVisibility.evaluate(edu.uci.ics.jung.graph.util.Context<edu.uci.ics.jung.graph.Graph<AbstractGraphNode,AbstractGraphEdge>,AbstractGraphEdge> context)
boolean	GraphFunctions.NodeVisibility.evaluate(edu.uci.ics.jung.graph.util.Context<edu.uci.ics.jung.graph.Graph<AbstractGraphNode,AbstractGraphEdge>,AbstractGraphNode> context)
boolean	GraphFunctions.NodeVisibility.evaluate(edu.uci.ics.jung.graph.util.Context<edu.uci.ics.jung.graph.Graph<AbstractGraphNode,AbstractGraphEdge>,AbstractGraphNode> context)
void	GraphFunctions.GraphEdgeLabelRenderer.labelEdge(edu.uci.ics.jung.visualization.RenderContext<AbstractGraphNode,AbstractGraphEdge> rc, edu.uci.ics.jung.algorithms.layout.Layout<AbstractGraphNode,AbstractGraphEdge> layout, AbstractGraphEdge e, java.lang.String label)
void	GraphFunctions.GraphEdgeLabelRenderer.labelEdge(edu.uci.ics.jung.visualization.RenderContext<AbstractGraphNode,AbstractGraphEdge> rc, edu.uci.ics.jung.algorithms.layout.Layout<AbstractGraphNode,AbstractGraphEdge> layout, AbstractGraphEdge e, java.lang.String label)
void	GraphFunctions.GraphNodeLabelRenderer.labelVertex(edu.uci.ics.jung.visualization.RenderContext<AbstractGraphNode,AbstractGraphEdge> rc, edu.uci.ics.jung.algorithms.layout.Layout<AbstractGraphNode,AbstractGraphEdge> layout, AbstractGraphNode v, java.lang.String label)
void	GraphFunctions.GraphNodeLabelRenderer.labelVertex(edu.uci.ics.jung.visualization.RenderContext<AbstractGraphNode,AbstractGraphEdge> rc, edu.uci.ics.jung.algorithms.layout.Layout<AbstractGraphNode,AbstractGraphEdge> layout, AbstractGraphNode v, java.lang.String label)

Uses of AbstractGraphNode in mgui.interfaces.shapes

Methods in mgui.interfaces.shapes with parameters of type AbstractGraphNode

Modifier and Type	Method	Description
protected NodeShape	PointSet2DInt.getVertexShape(AbstractGraphNode vertex)

Uses of AbstractGraphNode in mgui.interfaces.shapes.graphs

Fields in mgui.interfaces.shapes.graphs with type parameters of type AbstractGraphNode

Modifier and Type	Field	Description
protected Graph2DLayout<AbstractGraphNode,AbstractGraphEdge>	Graph2DInt.graph_layout
protected java.util.HashMap<AbstractGraphNode,java.lang.Integer>	Graph3DInt.node_map
protected edu.uci.ics.jung.graph.ObservableGraph<AbstractGraphNode,AbstractGraphEdge>	Graph2DInt.observable_graph
protected edu.uci.ics.jung.visualization3d.RenderContext<AbstractGraphNode,AbstractGraphEdge>	Graph3DInt.renderContext
protected java.util.HashMap<AbstractGraphNode,java.lang.Integer>	Graph2DInt.vertex_map

Methods in mgui.interfaces.shapes.graphs that return types with arguments of type AbstractGraphNode

Modifier and Type	Method	Description
protected edu.uci.ics.jung.algorithms.layout3d.Layout<AbstractGraphNode,AbstractGraphEdge>	Graph3DInt.getGraphLayoutInstance()
protected edu.uci.ics.jung.algorithms.layout3d.Layout<AbstractGraphNode,AbstractGraphEdge>	Graph3DInt.getLayout()

Methods in mgui.interfaces.shapes.graphs with parameters of type AbstractGraphNode

Modifier and Type	Method	Description
protected org.jogamp.java3d.Appearance	Graph3DInt.getLabelAppearance(AbstractGraphNode node)
protected org.jogamp.java3d.Appearance	Graph3DInt.getVertexAppearance(AbstractGraphNode node)
java.awt.Color	Graph2DInt.getVertexColour(AbstractGraphNode node)
java.awt.Color	Graph3DInt.getVertexColour(AbstractGraphNode node)
float	Graph2DInt.getVertexScale(AbstractGraphNode node)
float	Graph3DInt.getVertexScale(AbstractGraphNode node)
protected NodeShape	Graph2DInt.getVertexShape(AbstractGraphNode vertex)

Method parameters in mgui.interfaces.shapes.graphs with type arguments of type AbstractGraphNode

Modifier and Type	Method	Description
void	Graph2DInt.handleGraphEvent(edu.uci.ics.jung.graph.event.GraphEvent<AbstractGraphNode,AbstractGraphEdge> evt)

Constructor parameters in mgui.interfaces.shapes.graphs with type arguments of type AbstractGraphNode

Constructor	Description
Graph2DInt(Graph2D graph, Graph2DLayout<AbstractGraphNode,AbstractGraphEdge> layout)
Graph2DInt(Graph2D graph, Graph2DLayout<AbstractGraphNode,AbstractGraphEdge> layout, java.util.HashMap<AbstractGraphNode,java.lang.Integer> index_map)
Graph2DInt(Graph2D graph, Graph2DLayout<AbstractGraphNode,AbstractGraphEdge> layout, java.util.HashMap<AbstractGraphNode,java.lang.Integer> index_map)
RenderServer(Graph2DLayout<AbstractGraphNode,AbstractGraphEdge> layout)

Uses of AbstractGraphNode in mgui.interfaces.shapes.graphs.util

Classes in mgui.interfaces.shapes.graphs.util with type parameters of type AbstractGraphNode

Modifier and Type	Class	Description
class	Graph2DLayout<V extends AbstractGraphNode,E extends AbstractGraphEdge>	Layout for use with Graph2DInt.

Uses of AbstractGraphNode in mgui.interfaces.shapes.util

Method parameters in mgui.interfaces.shapes.util with type arguments of type AbstractGraphNode

Modifier and Type	Method	Description
static Graph2DInt	ShapeFunctions.getIntersectedGraph(InterfaceAbstractGraph graph3d, java.util.HashMap<AbstractGraphNode,java.lang.Integer> node_map, Plane3D plane, float above_dist, float below_dist)	Returns a Graph2DInt object derived from the plane and 3D graph.
static Graph2DInt	ShapeFunctions.getIntersectedGraph(InterfaceAbstractGraph graph3d, java.util.HashMap<AbstractGraphNode,java.lang.Integer> node_map, Plane3D plane, float above_dist, float below_dist, org.jogamp.vecmath.Matrix4d transform)	Returns a Graph2DInt object derived from the plane and 3D graph.

Uses of AbstractGraphNode in mgui.interfaces.tools.graphs

Fields in mgui.interfaces.tools.graphs with type parameters of type AbstractGraphNode

Modifier and Type	Field	Description
protected edu.uci.ics.jung.visualization.control.DefaultModalGraphMouse<AbstractGraphNode,AbstractGraphEdge>	ToolGraphTransform.graph_mouse

Uses of AbstractGraphNode in mgui.io.domestic.graphs.xml

Methods in mgui.io.domestic.graphs.xml that return AbstractGraphNode

Modifier and Type	Method	Description
static AbstractGraphNode	GraphXMLFunctions.getGraphNodeInstance(org.xml.sax.Attributes attributes)	Returns a new instance of AbstractGraphNode, from the given SAX attributes.

Uses of AbstractGraphNode in mgui.neuro.graphs

Subclasses of AbstractGraphNode in mgui.neuro.graphs

Modifier and Type	Class	Description
class	CorticalNetworkGraphNode
class	NeuralNetNode	Extension of DirectedSparseVertex to specifically represent nodes in neural networks, i.e., containing references to instances of Neuron.