Uses of Class
mgui.interfaces.graphs.InterfaceAbstractGraph

Packages that use InterfaceAbstractGraph

Package	Description
mgui.geometry	Provides 2D and 3D geometry representations and utilities for all shapes used in ModelGUI.
mgui.graphs.networks	Classes representing network graphs.
mgui.interfaces	This package contains all main/abstract interface objects (object which provides user interations) for ModelGUI.
mgui.interfaces.graphs	Provides an interface for user interaction with graph objects.
mgui.interfaces.graphs.util
mgui.interfaces.shapes.graphs
mgui.interfaces.shapes.util
mgui.io.domestic.graphs
mgui.io.domestic.graphs.xml
mgui.io.foreign.pajek
mgui.models.networks
mgui.neuro.graphs
mgui.neuro.networks

Uses of InterfaceAbstractGraph in mgui.geometry

Fields in mgui.geometry declared as InterfaceAbstractGraph

Modifier and Type	Field	Description
protected InterfaceAbstractGraph	Graph2D.graph
protected InterfaceAbstractGraph	Graph3D.graph

Methods in mgui.geometry that return InterfaceAbstractGraph

Modifier and Type	Method	Description
InterfaceAbstractGraph	Graph2D.getGraph()
InterfaceAbstractGraph	Graph3D.getGraph()

Methods in mgui.geometry with parameters of type InterfaceAbstractGraph

Modifier and Type	Method	Description
void	Graph2D.setGraph(InterfaceAbstractGraph graph)
void	Graph3D.setGraph(InterfaceAbstractGraph graph)

Constructors in mgui.geometry with parameters of type InterfaceAbstractGraph

Constructor	Description
Graph2D(InterfaceAbstractGraph graph)
Graph2D(InterfaceAbstractGraph graph, java.util.HashMap<AbstractGraphNode,org.jogamp.vecmath.Point2f> vertices)
Graph3D(InterfaceAbstractGraph graph)
Graph3D(InterfaceAbstractGraph graph, java.util.HashMap<AbstractGraphNode,org.jogamp.vecmath.Point3f> nodes)

Uses of InterfaceAbstractGraph in mgui.graphs.networks

Subclasses of InterfaceAbstractGraph in mgui.graphs.networks

Modifier and Type	Class	Description
class	AbstractNetworkGraph	A graph which explicitly represents a connected network.

Uses of InterfaceAbstractGraph in mgui.interfaces

Fields in mgui.interfaces with type parameters of type InterfaceAbstractGraph

Modifier and Type	Field	Description
protected java.util.ArrayList<InterfaceAbstractGraph>	InterfaceWorkspace.graphs

Methods in mgui.interfaces that return types with arguments of type InterfaceAbstractGraph

Modifier and Type	Method	Description
java.util.ArrayList<InterfaceAbstractGraph>	InterfaceWorkspace.getGraphs()

Methods in mgui.interfaces with parameters of type InterfaceAbstractGraph

Modifier and Type	Method	Description
void	InterfaceWorkspace.addGraph(InterfaceAbstractGraph graph)
void	InterfaceWorkspace.removeGraph(InterfaceAbstractGraph graph)

Uses of InterfaceAbstractGraph in mgui.interfaces.graphs

Subclasses of InterfaceAbstractGraph in mgui.interfaces.graphs

Modifier and Type	Class	Description
class	DefaultGraph	Default implementation of a Graph in ModelGUI.

Fields in mgui.interfaces.graphs declared as InterfaceAbstractGraph

Modifier and Type	Field	Description
protected InterfaceAbstractGraph	InterfaceGraphDisplay.graph

Methods in mgui.interfaces.graphs that return InterfaceAbstractGraph

Modifier and Type	Method	Description
InterfaceAbstractGraph	GraphableObject.getGraph()

Methods in mgui.interfaces.graphs with parameters of type InterfaceAbstractGraph

Modifier and Type	Method	Description
protected void	DefaultGraph.setFromGraph(InterfaceAbstractGraph g)
void	InterfaceGraphDisplay.setGraph(InterfaceAbstractGraph graph)

Constructors in mgui.interfaces.graphs with parameters of type InterfaceAbstractGraph

Constructor	Description
DefaultGraph(InterfaceAbstractGraph graph)	Construct a new graph as a copy of graph.
InterfaceGraphDisplay(InterfaceAbstractGraph graph, java.lang.String layout)
InterfaceGraphEvent(InterfaceAbstractGraph graph, int code)

Uses of InterfaceAbstractGraph in mgui.interfaces.graphs.util

Methods in mgui.interfaces.graphs.util that return InterfaceAbstractGraph

Modifier and Type	Method	Description
static InterfaceAbstractGraph	GraphFunctions.getDistanceWeightedGraphForMesh(Mesh3D mesh)	Converts mesh to a weighted graph.

Methods in mgui.interfaces.graphs.util with parameters of type InterfaceAbstractGraph

Modifier and Type	Method	Description
static Jama.Matrix	GraphFunctions.getShortestPaths(InterfaceAbstractGraph graph)	Returns an N x N matrix with the shortest paths lengths between each pair of vertices i and j, in graph.
static Jama.Matrix	GraphFunctions.getShortestPaths(InterfaceAbstractGraph graph, java.util.ArrayList<java.lang.Integer> vertices)	Returns an N x N matrix with the shortest paths lengths between each pair of vertices i and j, in vertices.

Uses of InterfaceAbstractGraph in mgui.interfaces.shapes.graphs

Methods in mgui.interfaces.shapes.graphs that return InterfaceAbstractGraph

Modifier and Type	Method	Description
InterfaceAbstractGraph	Graph3DInt.getGraph()

Constructors in mgui.interfaces.shapes.graphs with parameters of type InterfaceAbstractGraph

Constructor	Description
Graph3DInt(InterfaceAbstractGraph graph)

Uses of InterfaceAbstractGraph in mgui.interfaces.shapes.util

Methods in mgui.interfaces.shapes.util with parameters of type InterfaceAbstractGraph

Modifier and Type	Method	Description
static Graph2DInt	ShapeFunctions.getIntersectedGraph(InterfaceAbstractGraph graph3d, java.util.HashMap<AbstractGraphNode,java.lang.Integer> node_map, Plane3D plane, float above_dist, float below_dist)	Returns a Graph2DInt object derived from the plane and 3D graph.
static Graph2DInt	ShapeFunctions.getIntersectedGraph(InterfaceAbstractGraph graph3d, java.util.HashMap<AbstractGraphNode,java.lang.Integer> node_map, Plane3D plane, float above_dist, float below_dist, org.jogamp.vecmath.Matrix4d transform)	Returns a Graph2DInt object derived from the plane and 3D graph.

Uses of InterfaceAbstractGraph in mgui.io.domestic.graphs

Fields in mgui.io.domestic.graphs with type parameters of type InterfaceAbstractGraph

Modifier and Type	Field	Description
java.util.ArrayList<InterfaceAbstractGraph>	GraphOutputOptions.graphs

Methods in mgui.io.domestic.graphs that return InterfaceAbstractGraph

Modifier and Type	Method	Description
InterfaceAbstractGraph	GraphOutputOptions.getGraph(int i)
abstract InterfaceAbstractGraph	GraphFileLoader.loadGraph(boolean unique_labels, boolean get_locations)

Methods in mgui.io.domestic.graphs that return types with arguments of type InterfaceAbstractGraph

Modifier and Type	Method	Description
java.util.ArrayList<InterfaceAbstractGraph>	GraphFileLoader.loadGraphs()

Methods in mgui.io.domestic.graphs with parameters of type InterfaceAbstractGraph

Modifier and Type	Method	Description
boolean	GraphFileWriter.writeGraph(InterfaceAbstractGraph graph, ProgressUpdater progress_bar)	Writes this graph to file using its domestic XML representation.

Uses of InterfaceAbstractGraph in mgui.io.domestic.graphs.xml

Methods in mgui.io.domestic.graphs.xml that return InterfaceAbstractGraph

Modifier and Type	Method	Description
static InterfaceAbstractGraph	GraphXMLFunctions.getGraphInstance(org.xml.sax.Attributes attributes)	Returns a new instance of InterfaceAbstractGraph, from the given SAX attributes.

Uses of InterfaceAbstractGraph in mgui.io.foreign.pajek

Methods in mgui.io.foreign.pajek that return InterfaceAbstractGraph

Modifier and Type	Method	Description
InterfaceAbstractGraph	PajekGraphLoader.loadGraph()
InterfaceAbstractGraph	PajekGraphLoader.loadGraph(boolean unique_labels, boolean has_locations)

Uses of InterfaceAbstractGraph in mgui.models.networks

Methods in mgui.models.networks that return InterfaceAbstractGraph

Modifier and Type	Method	Description
abstract InterfaceAbstractGraph	AbstractNetwork.getGraph()
abstract InterfaceAbstractGraph	AbstractNetworkModel.getGraph()

Uses of InterfaceAbstractGraph in mgui.neuro.graphs

Subclasses of InterfaceAbstractGraph in mgui.neuro.graphs

Modifier and Type	Class	Description
class	CorticalNetworkGraph
class	NeuralNetGraph	Extension of JUNG's DirectedSparseGraph designed to specifically represent instances of NeuralNet.

Uses of InterfaceAbstractGraph in mgui.neuro.networks

Methods in mgui.neuro.networks that return InterfaceAbstractGraph

Modifier and Type	Method	Description
InterfaceAbstractGraph	CorticalNetwork.getGraph()