Package mgui.io.foreign.freesurfer

Class FreesurferVertexDataInOptions

java.lang.Object

mgui.interfaces.InterfaceOptions

mgui.io.InterfaceIOOptions

mgui.io.domestic.shapes.SurfaceDataInputOptions

mgui.io.foreign.freesurfer.FreesurferVertexDataInOptions

All Implemented Interfaces:

InterfaceObject, NamedObject, TreeObject, CleanableObject, XMLObject

public class FreesurferVertexDataInOptions
extends SurfaceDataInputOptions

Options for FreesurferVertexDataLoader. Format specifies which type to expect when loading. Default is dense1 (old curvature format). Dense2 = new curv format.

See: http://www.grahamwideman.com/gw/brain/fs/surfacefileformats.htm.

See: http://surfer.nmr.mgh.harvard.edu/fswiki/LabelsClutsAnnotationFiles.

Since:

1.0

Version:

1.0

Author:

Andrew Reid

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	FreesurferVertexDataInOptions.Format

Nested classes/interfaces inherited from class mgui.io.domestic.shapes.SurfaceDataInputOptions

SurfaceDataInputOptions.DataType

Nested classes/interfaces inherited from interface mgui.interfaces.xml.XMLObject

XMLObject.XMLEncoding, XMLObject.XMLType

Field Summary

Fields

Modifier and Type	Field	Description
ColourMap	colour_map
boolean	fail_on_bad_rgb
protected FreesurferVertexDataInOptions.Format	format
boolean	load_colour_map
double	missing_value

Fields inherited from class mgui.io.domestic.shapes.SurfaceDataInputOptions

data_type, files, mesh, names

Constructor Summary

Constructors

Constructor	Description
FreesurferVertexDataInOptions()
FreesurferVertexDataInOptions(FreesurferVertexDataInOptions.Format format)

Method Summary

Modifier and Type	Method	Description
FreesurferVertexDataInOptions.Format	getFormat()
void	setFormat(FreesurferVertexDataInOptions.Format format)

Methods inherited from class mgui.io.domestic.shapes.SurfaceDataInputOptions

getFileChooser, getFileChooser, getFiles, setFiles, setObject

Methods inherited from class mgui.io.InterfaceIOOptions

getDTD, getLocalName, getShortXML, getXML, getXML, getXMLSchema, handleXMLElementEnd, handleXMLElementStart, handleXMLString, setFromComplementaryOptions, writeXML, writeXML, writeXML

Methods inherited from class mgui.interfaces.InterfaceOptions

clean, destroy, getName, getTreeLabel, isDestroyed, issueTreeNode, setName, setTreeNode

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

format

protected FreesurferVertexDataInOptions.Format format

colour_map

public ColourMap colour_map

load_colour_map

public boolean load_colour_map

missing_value

public double missing_value

fail_on_bad_rgb

public boolean fail_on_bad_rgb

Constructor Details

FreesurferVertexDataInOptions

public FreesurferVertexDataInOptions()

FreesurferVertexDataInOptions

public FreesurferVertexDataInOptions(FreesurferVertexDataInOptions.Format format)

Method Details

getFormat

public FreesurferVertexDataInOptions.Format getFormat()

setFormat

public void setFormat(FreesurferVertexDataInOptions.Format format)