Package mgui.io.foreign.fsl

Class FSLVolumeLoader

java.lang.Object

mgui.io.FileLoader

mgui.io.domestic.shapes.InterfaceShapeLoader

mgui.io.domestic.shapes.VolumeFileLoader

mgui.io.foreign.fsl.FSLVolumeLoader

All Implemented Interfaces:

InterfaceIO, IconObject

public class FSLVolumeLoader
extends VolumeFileLoader

Loader for a FSL-style volume file (mgh/mgz).

See http://ftp.nmr.mgh.harvard.edu/fswiki/FsTutorial/MghFormat

Since:

1.0

Version:

1.0

Author:

Andrew Reid

Field Summary

Fields inherited from class mgui.io.domestic.shapes.VolumeFileLoader

dataMax, dataMin, flipX, flipY, flipZ, maxAlpha, minAlpha, setAlpha

Fields inherited from class mgui.io.FileLoader

dataFile, dataURL, options

Constructor Summary

Constructors

Constructor	Description
FSLVolumeLoader()
FSLVolumeLoader(java.io.File file)

Method Summary

Modifier and Type	Method	Description
VolumeMetadata	getVolumeMetadata()	Returns a set of metadata describing the current volume file.
protected boolean	setVolume3DBlocking(Volume3DInt volume, java.lang.String column, int v, VolumeInputOptions options, ProgressUpdater progress)

Methods inherited from class mgui.io.domestic.shapes.VolumeFileLoader

getDefaultOptions, getObjectIcon, getSupportedObjects, getVolCount, getVolume3D, getVolume3D, getVolume3D, getVolume3D, getVolume3D, getVolume3DCustom, load, loadObject, loadShape, loadVolume, loadVolume, loadVolume, setAlpha, setAlpha, setVolume3D, setVolume3D, setVolume3D, setVolume3D, setVolume3DWorker

Methods inherited from class mgui.io.FileLoader

getComplementIOType, getFailureMessage, getFile, getIOType, getOptions, getProgressMessage, getSuccessMessage, getTitle, getWriterComplement, load, load, loadObject, loadObject, loadObject, setFile, setOptions, setURL, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

FSLVolumeLoader

public FSLVolumeLoader()

FSLVolumeLoader

public FSLVolumeLoader(java.io.File file)

Method Details

getVolumeMetadata

public VolumeMetadata getVolumeMetadata()
                                 throws java.io.IOException,
java.io.FileNotFoundException

Description copied from class: VolumeFileLoader

Returns a set of metadata describing the current volume file.

Specified by:

getVolumeMetadata in class VolumeFileLoader

Returns:

Throws:

java.io.IOException

java.io.FileNotFoundException

setVolume3DBlocking

protected boolean setVolume3DBlocking(Volume3DInt volume,
java.lang.String column,
int v,
VolumeInputOptions options,
ProgressUpdater progress)
                               throws ShapeIOException

Specified by:

setVolume3DBlocking in class VolumeFileLoader

Throws:

ShapeIOException