Package mgui.neuro.components.compartments

Class CompartmentalNeuron

java.lang.Object

mgui.interfaces.AbstractInterfaceObject

mgui.models.networks.components.AbstractNetworkComponent

mgui.neuro.components.AbstractNeuroComponent

mgui.neuro.components.compartments.CompartmentalComponent

mgui.neuro.components.compartments.CompartmentalNeuron

All Implemented Interfaces:

java.lang.Cloneable, java.lang.Comparable<DynamicModelComponent>, AttributeListener, AttributeObject, InterfaceObject, NamedObject, TreeObject, CleanableObject, DynamicModelComponent, TimeStepListener, Updateable, Neuron

public class CompartmentalNeuron
extends CompartmentalComponent
implements Neuron

Field Summary

Fields inherited from class mgui.neuro.components.compartments.CompartmentalComponent

compartments

Fields inherited from class mgui.neuro.components.AbstractNeuroComponent

attributes, clock, connections, events, hasSubComponents, id, listeners, solver, updated

Fields inherited from class mgui.interfaces.AbstractInterfaceObject

isDestroyed, tree_nodes

Constructor Summary

Constructors

Constructor	Description
CompartmentalNeuron()

Method Summary

Modifier and Type	Method	Description
void	connectDendrites()
Axon	getAxon()
Dendrites	getDendrites()
Soma	getSoma()
void	setAxon(Axon a)
void	setCompartments()	Set/reset list of compartments to size N
void	setDendrites(Dendrites d)
void	setSoma(Soma s)
void	transmit(AbstractCompartment c1, AbstractCompartment c2)	Transmit signals between compartments; should update appropriate state and/or temporary variables.

Methods inherited from class mgui.neuro.components.compartments.CompartmentalComponent

clone, executeEvent, getN, init, setN, timeElapsed

Methods inherited from class mgui.neuro.components.AbstractNeuroComponent

addConnection, addEvent, addListener, addToEngine, attributeUpdated, compareTo, executeEvents, fireListeners, fireListeners, getAttribute, getAttributes, getConnections, getDelay, getID, getName, getODESolver, getRate, getSolver, getSubComponents, hasSubComponents, removeConnection, removeListener, reset, resetClock, setAttribute, setAttributes, setDelay, setID, setID, setName, setODESolver, setSolver, setSolver, updateComponent, updateFromClock

Methods inherited from class mgui.models.networks.components.AbstractNetworkComponent

getAttributeValue

Methods inherited from class mgui.interfaces.AbstractInterfaceObject

clean, destroy, getTreeLabel, isDestroyed, issueTreeNode, setTreeNode, updateTreeNodes

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface mgui.interfaces.util.CleanableObject

clean

Methods inherited from interface java.lang.Comparable

compareTo

Methods inherited from interface mgui.models.dynamic.DynamicModelComponent

addConnection, addEvent, addToEngine, clone, executeEvents, getID, getSubComponents, hasSubComponents, removeConnection, reset, setID, setID

Methods inherited from interface mgui.interfaces.InterfaceObject

destroy, isDestroyed

Methods inherited from interface mgui.interfaces.NamedObject

getName, setName

Methods inherited from interface mgui.models.dynamic.TimeStepListener

timeElapsed

Methods inherited from interface mgui.interfaces.trees.TreeObject

getTreeLabel, issueTreeNode, setTreeNode

Constructor Details

CompartmentalNeuron

public CompartmentalNeuron()

Method Details

setCompartments

public void setCompartments()

Description copied from class: CompartmentalComponent

Set/reset list of compartments to size N

Specified by:

setCompartments in class CompartmentalComponent

connectDendrites

public void connectDendrites()

Specified by:

connectDendrites in interface Neuron

getAxon

public Axon getAxon()

Specified by:

getAxon in interface Neuron

getDendrites

public Dendrites getDendrites()

Specified by:

getDendrites in interface Neuron

getSoma

public Soma getSoma()

Specified by:

getSoma in interface Neuron

setAxon

public void setAxon(Axon a)
             throws NeuroException

Specified by:

setAxon in interface Neuron

Throws:

NeuroException

setDendrites

public void setDendrites(Dendrites d)
                  throws NeuroException

Specified by:

setDendrites in interface Neuron

Throws:

NeuroException

setSoma

public void setSoma(Soma s)
             throws NeuroException

Specified by:

setSoma in interface Neuron

Throws:

NeuroException

transmit

public void transmit(AbstractCompartment c1,
AbstractCompartment c2)
              throws NeuroException

Description copied from class: CompartmentalComponent

Transmit signals between compartments; should update appropriate state and/or temporary variables.

Specified by:

transmit in class CompartmentalComponent

Throws:

NeuroException