Package mgui.neuro.components.compartments

Class SimpleCompartment

java.lang.Object

mgui.interfaces.AbstractInterfaceObject

mgui.models.networks.components.AbstractNetworkComponent

mgui.neuro.components.AbstractNeuroComponent

mgui.neuro.components.AbstractNeuronalComponent

mgui.neuro.components.compartments.AbstractCompartment

mgui.neuro.components.compartments.SimpleCompartment

All Implemented Interfaces:

java.lang.Cloneable, java.lang.Comparable<DynamicModelComponent>, AttributeListener, AttributeObject, InterfaceObject, NamedObject, TreeObject, CleanableObject, DynamicModelComponent, DynamicModelODEComponent, TimeStepListener, Updateable, NeuronalComponent, org.opensourcephysics.numerics.ODE

public class SimpleCompartment
extends AbstractCompartment

Field Summary

Fields

Modifier and Type	Field	Description
int	adj
double	Cm
double	diameter
double	Iinj
double	length
double	Ra
double	Rm
double	Vadj
double	Vm

Fields inherited from class mgui.neuro.components.compartments.AbstractCompartment

potential, solver, state

Fields inherited from class mgui.neuro.components.AbstractNeuronalComponent

parent

Fields inherited from class mgui.neuro.components.AbstractNeuroComponent

attributes, clock, connections, events, hasSubComponents, id, listeners, updated

Fields inherited from class mgui.interfaces.AbstractInterfaceObject

isDestroyed, tree_nodes

Constructor Summary

Constructors

Constructor	Description
SimpleCompartment()
SimpleCompartment(double Rm, double Ra, double Cm, double length, double diameter)

Method Summary

Modifier and Type	Method	Description
void	getRate(double[] state, double[] rate)
protected void	init()
void	reset()	Reset the compartment's temporary variables

Methods inherited from class mgui.neuro.components.compartments.AbstractCompartment

clone, executeEvent, getODESolver, getState, resetSolver, timeElapsed, updateFromClock

Methods inherited from class mgui.neuro.components.AbstractNeuronalComponent

getParent, setParent

Methods inherited from class mgui.neuro.components.AbstractNeuroComponent

addConnection, addEvent, addListener, addToEngine, attributeUpdated, compareTo, executeEvents, fireListeners, fireListeners, getAttribute, getAttributes, getConnections, getDelay, getID, getName, getSolver, getSubComponents, hasSubComponents, removeConnection, removeListener, resetClock, setAttribute, setAttributes, setDelay, setID, setID, setName, setODESolver, setSolver, setSolver, updateComponent

Methods inherited from class mgui.models.networks.components.AbstractNetworkComponent

getAttributeValue

Methods inherited from class mgui.interfaces.AbstractInterfaceObject

clean, destroy, getTreeLabel, isDestroyed, issueTreeNode, setTreeNode, updateTreeNodes

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface mgui.interfaces.util.CleanableObject

clean

Methods inherited from interface java.lang.Comparable

compareTo

Methods inherited from interface mgui.models.dynamic.DynamicModelComponent

addConnection, addEvent, addToEngine, executeEvents, getID, getSubComponents, hasSubComponents, removeConnection, setID, setID

Methods inherited from interface mgui.interfaces.InterfaceObject

destroy, isDestroyed

Methods inherited from interface mgui.interfaces.NamedObject

getName, setName

Methods inherited from interface mgui.interfaces.trees.TreeObject

getTreeLabel, issueTreeNode, setTreeNode

Field Details

Rm

public double Rm

Cm

public double Cm

Ra

public double Ra

diameter

public double diameter

length

public double length

Vm

public double Vm

Iinj

public double Iinj

Vadj

public double Vadj

adj

public int adj

Constructor Details

SimpleCompartment

public SimpleCompartment()

SimpleCompartment

public SimpleCompartment(double Rm,
double Ra,
double Cm,
double length,
double diameter)

Method Details

init

protected void init()

Overrides:

init in class AbstractCompartment

getRate

public void getRate(double[] state,
double[] rate)

Specified by:

getRate in interface org.opensourcephysics.numerics.ODE

Specified by:

getRate in class AbstractCompartment

reset

public void reset()

Description copied from class: AbstractCompartment

Reset the compartment's temporary variables

Specified by:

reset in interface DynamicModelComponent

Specified by:

reset in class AbstractCompartment