Package mgui.neuro.imaging.camino

Class CaminoFunctions

java.lang.Object

mgui.interfaces.Utility

mgui.neuro.imaging.camino.CaminoFunctions

public class CaminoFunctions
extends Utility

Field Summary

Fields

Modifier and Type	Field	Description
static boolean	fail_on_exception
static java.lang.String	input_file
static java.lang.String	output_file
static java.lang.String	root_dir
static int	temp_count
static java.lang.String	temp_input
static java.lang.String	temp_output

Constructor Summary

Constructors

Constructor	Description
CaminoFunctions()

Method Summary

Modifier and Type	Method	Description
static boolean	deleteTempFiles()
static void	exceptionEncountered()
static java.lang.String	getArgString(java.lang.String[] args)
static void	init()
static boolean	launchBlockingCaminoProcess(PipelineProcessInstance process, java.lang.String subject, java.lang.String root, java.lang.String logger)
static boolean	launchCaminoProcess(CaminoProcess command, java.lang.String args)
static boolean	launchCaminoProcess(PipelineProcessInstance process)
static boolean	launchCaminoProcess(PipelineProcessInstance process, boolean blocking)
static boolean	launchCaminoProcess(PipelineProcessInstance process, java.lang.String subject, java.lang.String root)
static boolean	launchCaminoProcess(PipelineProcessInstance process, java.lang.String subject, java.lang.String root, java.lang.String logger)
static boolean	launchCaminoProcess(PipelineProcessInstance process, java.lang.String subject, java.lang.String root, java.lang.String logger, boolean blocking)
static java.util.ArrayList<java.lang.String>	parseArg(java.lang.String arg)
static java.util.ArrayList<java.lang.String>	parseArg(java.lang.String arg, java.lang.String subject, java.lang.String root)
static void	reset()
static void	resetDefaults()	Since Camino was built to be run from the command line, its static CL_Initializer and OutputManager classes are meant to be reinstantiated upon each function call.
static boolean	stopExecution()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

output_file

public static java.lang.String output_file

root_dir

public static java.lang.String root_dir

input_file

public static java.lang.String input_file

temp_input

public static java.lang.String temp_input

temp_output

public static java.lang.String temp_output

temp_count

public static int temp_count

fail_on_exception

public static boolean fail_on_exception

Constructor Details

CaminoFunctions

public CaminoFunctions()

Method Details

launchCaminoProcess

public static boolean launchCaminoProcess(CaminoProcess command,
java.lang.String args)

init

public static void init()

reset

public static void reset()

launchCaminoProcess

public static boolean launchCaminoProcess(PipelineProcessInstance process)

launchCaminoProcess

public static boolean launchCaminoProcess(PipelineProcessInstance process,
boolean blocking)

stopExecution

public static boolean stopExecution()

launchCaminoProcess

public static boolean launchCaminoProcess(PipelineProcessInstance process,
java.lang.String subject,
java.lang.String root)

launchCaminoProcess

public static boolean launchCaminoProcess(PipelineProcessInstance process,
java.lang.String subject,
java.lang.String root,
java.lang.String logger)

launchCaminoProcess

public static boolean launchCaminoProcess(PipelineProcessInstance process,
java.lang.String subject,
java.lang.String root,
java.lang.String logger,
boolean blocking)

launchBlockingCaminoProcess

public static boolean launchBlockingCaminoProcess(PipelineProcessInstance process,
java.lang.String subject,
java.lang.String root,
java.lang.String logger)

getArgString

public static java.lang.String getArgString(java.lang.String[] args)

parseArg

public static java.util.ArrayList<java.lang.String> parseArg(java.lang.String arg)

resetDefaults

public static void resetDefaults()

Since Camino was built to be run from the command line, its static CL_Initializer and OutputManager classes are meant to be reinstantiated upon each function call. Since we want to call Camino functions directly, from within the same JVM instance, we need to initialize the variables manually to their defaults, which many processes assume.

parseArg

public static java.util.ArrayList<java.lang.String> parseArg(java.lang.String arg,
java.lang.String subject,
java.lang.String root)

deleteTempFiles

public static boolean deleteTempFiles()

exceptionEncountered

public static void exceptionEncountered()