Uses of Class
mgui.interfaces.maps.ColourMap

Packages that use ColourMap

Package	Description
mgui.geometry.volume	Provides classes for representing and operating on 3D volume shapes.
mgui.image.util	Utility classes for operations on 2D and 3D images.
mgui.interfaces	This package contains all main/abstract interface objects (object which provides user interations) for ModelGUI.
mgui.interfaces.graphs	Provides an interface for user interaction with graph objects.
mgui.interfaces.maps	Provides a set a maps for use by ModelGUI objects.
mgui.interfaces.plots.mgui
mgui.interfaces.shapes	This package provides interfaces for user interaction with shapes and shape models.
mgui.interfaces.shapes.dynamic
mgui.interfaces.shapes.graphs
mgui.interfaces.shapes.neuro
mgui.interfaces.shapes.util
mgui.interfaces.shapes.volume
mgui.io.domestic.maps
mgui.io.domestic.shapes
mgui.io.foreign.freesurfer
mgui.io.foreign.vol

Uses of ColourMap in mgui.geometry.volume

Methods in mgui.geometry.volume with parameters of type ColourMap

Modifier and Type	Method	Description
static WindowedColourModel	VolumeFunctions.getColourModel(int transferType, ColourMap cmap)
static WindowedColourModel	VolumeFunctions.getColourModel(int transferType, ColourMap cmap, boolean setAlpha)
static WindowedColourModel	VolumeFunctions.getColourModel(int transferType, ColourMap cmap, double scale, double intercept, double window_width, double window_mid, boolean setAlphaFromIntensity)

Uses of ColourMap in mgui.image.util

Fields in mgui.image.util declared as ColourMap

Modifier and Type	Field	Description
protected ColourMap	WindowedColourModel.colourMap

Methods in mgui.image.util that return ColourMap

Modifier and Type	Method	Description
ColourMap	WindowedColourModel.getColourMap()

Methods in mgui.image.util with parameters of type ColourMap

Modifier and Type	Method	Description
boolean	WindowedColourModel.setColourMap(ColourMap cm)

Constructors in mgui.image.util with parameters of type ColourMap

Constructor	Description
WindowedColourModel(ColourMap cm, double min, double max, boolean has_alpha, int transfer_type)	Constructor specifying min and max values only.
WindowedColourModel(ColourMap cm, double scale, double intercept, double window_mid, double window_width, boolean has_alpha, int transferType)	Constructors specifying the full set of model parameters.

Uses of ColourMap in mgui.interfaces

Methods in mgui.interfaces that return ColourMap

Modifier and Type	Method	Description
static ColourMap	InterfaceEnvironment.getColourMap(java.lang.String name)	Gets a the colour map with the name name.

Methods in mgui.interfaces that return types with arguments of type ColourMap

Modifier and Type	Method	Description
java.util.ArrayList<ColourMap>	InterfaceDisplayPanel.getColourMaps()
static java.util.ArrayList<ColourMap>	InterfaceEnvironment.getColourMaps()	Gets a list of currently loaded colour maps.

Methods in mgui.interfaces with parameters of type ColourMap

Modifier and Type	Method	Description
void	InterfaceDisplayPanel.addColourMap(ColourMap map)
static boolean	InterfaceEnvironment.addColourMap(ColourMap cm)	Add new colour map to the environment.

Uses of ColourMap in mgui.interfaces.graphs

Methods in mgui.interfaces.graphs that return ColourMap

Modifier and Type	Method	Description
ColourMap	InterfaceGraphDisplay.getEdgeWeightColourMap()

Uses of ColourMap in mgui.interfaces.maps

Subclasses of ColourMap in mgui.interfaces.maps

Modifier and Type	Class	Description
class	ContinuousColourMap	Maps colours to values based upon a set of anchors (expressed on the range [0:1]) and an interpolator.
class	DiscreteColourMap	Colour map for discrete 1-to-1 mappings (integers to colours).

Methods in mgui.interfaces.maps with parameters of type ColourMap

Modifier and Type	Method	Description
void	ColourMapListener.colourMapChanged(ColourMap map)

Uses of ColourMap in mgui.interfaces.plots.mgui

Methods in mgui.interfaces.plots.mgui that return ColourMap

Modifier and Type	Method	Description
ColourMap	MatrixImagePlot.getColourMap()	Return the current colour map

Uses of ColourMap in mgui.interfaces.shapes

Fields in mgui.interfaces.shapes with type parameters of type ColourMap

Modifier and Type	Field	Description
protected java.util.HashMap<java.lang.String,ColourMap>	InterfaceShape.linked_colour_maps

Methods in mgui.interfaces.shapes that return ColourMap

Modifier and Type	Method	Description
ColourMap	InterfaceShape.getColourMap()	Returns the ColourMap associated with the current data column.
ColourMap	InterfaceShape.getColourMap(java.lang.String key)	Gets the colour map for column.
ColourMap	PointSet2DInt.getColourMap()
ColourMap	VertexDataColumn.getColourMap()	Returns the colour map associated with this column, or null if there is no associated colour map
ColourMap	InterfaceShape.getDefaultColourMap()

Methods in mgui.interfaces.shapes with parameters of type ColourMap

Modifier and Type	Method	Description
boolean	InterfaceShape.addVertexData(java.lang.String key, int dataType, ColourMap cmap)	Add a vertex-wise data column of type dataType, which must be one of DataBuffer.TYPE_DOUBLE, DataBuffer.TYPE_FLOAT, or DataBuffer.TYPE_INT.
boolean	InterfaceShape.addVertexData(java.lang.String key, java.util.ArrayList<MguiNumber> data, ColourMap cmap)	Adds vertex-wise data to this shape.
boolean	InterfaceShape.addVertexData(java.lang.String key, java.util.ArrayList<MguiNumber> data, NameMap nmap, ColourMap cmap)	Adds vertex-wise data to this shape.
boolean	Volume3DInt.addVertexData(java.lang.String column, java.util.ArrayList<MguiNumber> data, NameMap nmap, ColourMap cmap)
void	Volume3DInt.colourMapChanged(ColourMap map)
void	InterfaceShape.setColourMap(java.lang.String column, ColourMap cm)	Sets the colour map for column.
void	InterfaceShape.setColourMap(ColourMap cm)	Sets the colour map for the current column.
void	PointSet2DInt.setColourMap(ColourMap cm)
void	PointSet2DInt.setColourMap(ColourMap cm, boolean update)
void	VertexDataColumn.setColourMap(ColourMap map)	Sets the colour map associated with this column.
void	VertexDataColumn.setColourMap(ColourMap map, boolean update)	Sets the colour map associated with this column.
void	VertexDataColumn.setColourMap(ColourMap map, double colour_min, double colour_max, boolean update)	Sets the colour map associated with this column.
void	InterfaceShape.setDefaultColourMap(ColourMap cm)	COLOUR MAP STUFF
void	InterfaceShape.setDefaultColourMap(ColourMap cm, boolean update)

Constructors in mgui.interfaces.shapes with parameters of type ColourMap

Constructor	Description
TensorVolume3DInt(Grid3D g, ColourMap cmap)
Volume3DInt(Grid3D g, ColourMap cmap)

Uses of ColourMap in mgui.interfaces.shapes.dynamic

Constructors in mgui.interfaces.shapes.dynamic with parameters of type ColourMap

Constructor	Description
Volume4DInt(Grid3D dyn_grid, Grid3D base_grid, ColourMap cmap)

Uses of ColourMap in mgui.interfaces.shapes.graphs

Methods in mgui.interfaces.shapes.graphs that return ColourMap

Modifier and Type	Method	Description
ColourMap	Graph2DInt.getEdgeWeightColourMap()
ColourMap	Graph3DInt.getEdgeWeightColourMap()

Uses of ColourMap in mgui.interfaces.shapes.neuro

Methods in mgui.interfaces.shapes.neuro with parameters of type ColourMap

Modifier and Type	Method	Description
void	CorticalHemisphereSet3DInt.setColourMap(ColourMap cm, boolean update)
void	CorticalSurfaceSet3DInt.setColourMap(ColourMap cm, boolean update)

Uses of ColourMap in mgui.interfaces.shapes.util

Methods in mgui.interfaces.shapes.util with parameters of type ColourMap

Modifier and Type	Method	Description
static Mesh2DInt	ShapeFunctions.getIntersectionMesh(Mesh3D mesh, Plane3D plane, java.util.ArrayList<MguiNumber> data, ColourMap cmap)	Returns a Mesh2DInt object representing the intersection of the given 3D mesh with plane p.
static PointSet2DInt	ShapeFunctions.getIntersectionPointSet(PointSet3D point_set, Plane3D plane, float above_dist, float below_dist, java.util.HashMap<java.lang.String,java.util.ArrayList<MguiNumber>> data, ColourMap cmap)	Returns a PointSet2DInt object representing the points within spacing of the plane plane.

Uses of ColourMap in mgui.interfaces.shapes.volume

Fields in mgui.interfaces.shapes.volume declared as ColourMap

Modifier and Type	Field	Description
protected ColourMap	Volume3DTexture.colourMap

Methods in mgui.interfaces.shapes.volume with parameters of type ColourMap

Modifier and Type	Method	Description
void	GridVertexDataColumn.setColourMap(ColourMap map, boolean update)
void	GridVertexDataColumn.setColourMap(ColourMap map, double min, double max, boolean update)
void	Volume3DRenderer.setTexture(ColourMap cmap)	Sets a Volume3DTexture object from the current grid and data size

Constructors in mgui.interfaces.shapes.volume with parameters of type ColourMap

Constructor	Description
Volume3DTexture(Volume3DInt volume, ColourMap cmap)

Uses of ColourMap in mgui.io.domestic.maps

Subclasses of ColourMap in mgui.io.domestic.maps

Modifier and Type	Class	Description
class	Vector3ColourMap	Provides a colour mapping for a vector of size three, such that each element of the vector has a colour assignment, and the resulting colour is a weighting of these colours by x, y, z components:

Fields in mgui.io.domestic.maps declared as ColourMap

Modifier and Type	Field	Description
ColourMap	ColourMapXMLHandler.map
protected ColourMap	DiscreteColourMapLoader.map

Methods in mgui.io.domestic.maps that return ColourMap

Modifier and Type	Method	Description
ColourMap	ColourMapXMLHandler.getMap()
ColourMap	ColourMapLoader.loadMap()
ColourMap	ColourMapLoader.loadMap(InterfaceIOOptions options)

Uses of ColourMap in mgui.io.domestic.shapes

Fields in mgui.io.domestic.shapes declared as ColourMap

Modifier and Type	Field	Description
ColourMap	VolumeInputOptions.colour_map

Uses of ColourMap in mgui.io.foreign.freesurfer

Fields in mgui.io.foreign.freesurfer declared as ColourMap

Modifier and Type	Field	Description
ColourMap	FreesurferVertexDataInOptions.colour_map
ColourMap	FreesurferVertexDataLoader.colour_map

Uses of ColourMap in mgui.io.foreign.vol

Fields in mgui.io.foreign.vol declared as ColourMap

Modifier and Type	Field	Description
ColourMap	VolumeInputOptions.colourMap