Uses of Interface
mgui.io.InterfaceIO

Packages that use InterfaceIO

Package	Description
mgui.interfaces	This package contains all main/abstract interface objects (object which provides user interations) for ModelGUI.
mgui.interfaces.io	This package contains all classes which perform input/output functions.
mgui.io	This package contains all classes which perform input/output functions.
mgui.io.domestic	Input/output operations for "domestic" (mgui-specific) data formats.
mgui.io.domestic.datasources
mgui.io.domestic.graphs
mgui.io.domestic.maps
mgui.io.domestic.network
mgui.io.domestic.pipelines
mgui.io.domestic.printing
mgui.io.domestic.shapes
mgui.io.domestic.variables
mgui.io.domestic.videos
mgui.io.domestic.views
mgui.io.foreign.amira
mgui.io.foreign.camino
mgui.io.foreign.caret
mgui.io.foreign.duff
mgui.io.foreign.freesurfer
mgui.io.foreign.fsl
mgui.io.foreign.interfile
mgui.io.foreign.minc
mgui.io.foreign.mricro
mgui.io.foreign.pajek
mgui.io.foreign.trackvis
mgui.io.foreign.vol
mgui.io.foreign.wavefront
mgui.io.foreign.wunil
mgui.io.standard.gifti
mgui.io.standard.imaging
mgui.io.standard.json
mgui.io.standard.nifti
mgui.io.standard.xml
mgui.io.standard.xml.x3d

Uses of InterfaceIO in mgui.interfaces

Methods in mgui.interfaces with parameters of type InterfaceIO

Modifier and Type	Method	Description
static InterfaceIOType	InterfaceEnvironment.getIOTypeForInstance(InterfaceIO instance)	Return the I/O type associated with the specific instance of InterfaceIO.

Uses of InterfaceIO in mgui.interfaces.io

Fields in mgui.interfaces.io with type parameters of type InterfaceIO

Modifier and Type	Field	Description
protected java.lang.Class<InterfaceIO>	InterfaceIOType.io

Methods in mgui.interfaces.io that return InterfaceIO

Modifier and Type	Method	Description
InterfaceIO	InterfaceIOType.getIOInstance()	Returns a new instance of this type.

Methods in mgui.interfaces.io that return types with arguments of type InterfaceIO

Modifier and Type	Method	Description
java.lang.Class<InterfaceIO>	InterfaceIOType.getIO()

Method parameters in mgui.interfaces.io with type arguments of type InterfaceIO

Modifier and Type	Method	Description
void	InterfaceIOType.setIO(java.lang.Class<InterfaceIO> io)

Uses of InterfaceIO in mgui.io

Classes in mgui.io that implement InterfaceIO

Modifier and Type	Class	Description
class	FileLoader	Base class for all file loader classes.
class	FileWriter	Base class for all file writer classes.

Uses of InterfaceIO in mgui.io.domestic

Classes in mgui.io.domestic that implement InterfaceIO

Modifier and Type	Class	Description
class	WorkspaceWriter	Writes a workspace (i.e., an instance of InterfaceWorkspace) to XML.

Uses of InterfaceIO in mgui.io.domestic.datasources

Classes in mgui.io.domestic.datasources that implement InterfaceIO

Modifier and Type	Class	Description
class	DataSourceDriverLoader	Loader for a data source (JDBC) driver specification file.
class	DataSourceDriverWriter	Writer for a data source (JDBC) driver file.
class	DataSourceLoader	Loads a Data Source object.
class	DataSourceWriter	Writes a Data Source object to file.
class	ExportDataTableExcelWriter	Writes data from a data source DataItem to Microsoft Excel format.
class	ExportDataTableTextWriter	Writes data from a data source DataItem to a delimited text file.
class	ExportDataTableWriter	Abstract class for extension by writers which export data from a DataSourceItem to an external format.
class	ImportDataTableLoader	Imports data from an external format into a new DataSource table.
class	ImportDataTableTextLoader	Imports data from a delimited text file into a new DataSource table.

Uses of InterfaceIO in mgui.io.domestic.graphs

Classes in mgui.io.domestic.graphs that implement InterfaceIO

Modifier and Type	Class	Description
class	GraphFileLoader	Abstract loader class for loading graphs.
class	GraphFileWriter	Abstract class for all graph writers.

Uses of InterfaceIO in mgui.io.domestic.maps

Classes in mgui.io.domestic.maps that implement InterfaceIO

Modifier and Type	Class	Description
class	ColourMapLoader	Base class for loading a colour map from file.
class	ContinuousColourMapLoader	Loads a comma-delimited continuous colour map.
class	ContinuousColourMapWriter	Writes a comma-delimited continuous colour map.
class	DiscreteColourMapLoader	Loads a discrete colour map from either delimited ASCII or XML.
class	DiscreteColourMapWriter	Writer for discrete colour maps.
class	NameMapLoader	Reads a name map from file.
class	NameMapWriter	Writes a name map to an delimited ASCII file.

Uses of InterfaceIO in mgui.io.domestic.network

Classes in mgui.io.domestic.network that implement InterfaceIO

Modifier and Type	Class	Description
class	CorticalNetworkMatrixLoader	Reads an ASCII matrix representing a connected network into a cortical network, assigning weights based upon a specified range (mapped to the continuous range [0.0:1.0]).

Uses of InterfaceIO in mgui.io.domestic.pipelines

Classes in mgui.io.domestic.pipelines that implement InterfaceIO

Modifier and Type	Class	Description
class	PipelineLoader	Loads a pipeline (or multiple pipelines) from file.
class	PipelineProcessLibraryLoader	Loads a PipelineProcessLibrary from file.
class	PipelineProcessLibraryWriter	Writes a PipelineProcessLibrary to file.
class	PipelineWriter	Writes an InterfacePipeline instance to file.

Uses of InterfaceIO in mgui.io.domestic.printing

Classes in mgui.io.domestic.printing that implement InterfaceIO

Modifier and Type	Class	Description
class	StlWriter	Writes a Mesh3D object to STL format, suitable for 3D printing.

Uses of InterfaceIO in mgui.io.domestic.shapes

Classes in mgui.io.domestic.shapes that implement InterfaceIO

Modifier and Type	Class	Description
class	Graph3DWriter	Writer for a Graph3DInt object; default is to write using the domestic XML representation.
class	InterfaceShapeLoader	Abstract loader class for all loaders which load InterfaceShape objects.
class	InterfaceShapeWriter	General writer for an InterfaceShape object.
class	Mesh3DLoader	Deafult loader for loading a Mesh3DInt object.
class	Mesh3DWriter	Default writer for a Mesh3DInt object.
class	Point2DShapeLoader
class	PointSet2DLoader	Loader class for PointSet2DInt objects.
class	PointSet3DDataLoader
class	PointSet3DLoader	Domestic loader for a 3D point set.
class	PolygonSet3DLoader	Loads a set of 3D polygon objects (*.poly3d) from text.
class	ShapeDataLoader	Loads vertex-wise data from tabular text files into shapes.
class	ShapeModel3DLoader	Loader for a ShapeModel3D.
class	ShapeModel3DWriter	Writes a ShapeModel3D object to XML.
class	ShapeXmlLoader	Loader for an InterfaceShape stored in domestic XML format.
class	ShapeXmlWriter	Writes an InterfaceShape object to XML.
class	SurfaceDataFileLoader	Loads vertex-wise data into an InterfaceShape object.
class	SurfaceDataFileWriter
class	SurfaceFileLoader	Abstract loader class for all loaders which load Mesh3DInt objects.
class	SurfaceFileWriter	Represents an abstract surface file writer object.
class	VectorDataLoader
class	VectorSet3DLoader
class	VolumeFileLoader	Loader for reading from a volume (3D grid) file into a Volume3DInt object.
class	VolumeFileWriter	Writes a Volume3DInt to file.

Methods in mgui.io.domestic.shapes with parameters of type InterfaceIO

Modifier and Type	Method	Description
void	VolumeInputOptions.setInputType(InterfaceIO loader)

Uses of InterfaceIO in mgui.io.domestic.variables

Classes in mgui.io.domestic.variables that implement InterfaceIO

Modifier and Type	Class	Description
class	DefaultMatrixFileLoader	Default implementation of a matrix loader.
class	DefaultMatrixFileWriter
class	MatrixFileLoader
class	MatrixFileWriter	Base abstract class for writing a matrix to file.
class	MatrixTransformLoader
class	StringVectorLoader	Loader class to input an array of String objects into an StringVectorInt instance.

Uses of InterfaceIO in mgui.io.domestic.videos

Classes in mgui.io.domestic.videos that implement InterfaceIO

Modifier and Type	Class	Description
class	ImageStackVideoWriter	Outputs a Video to a stack of images which can be used to compile a video using a utility such as VirtualDub.
class	VideoLoader
class	VideoWriter
class	VideoXMLLoader

Uses of InterfaceIO in mgui.io.domestic.views

Classes in mgui.io.domestic.views that implement InterfaceIO

Modifier and Type	Class	Description
class	View3DLoader	Loads a set of View3D objects from an XML file.
class	View3DWriter	Writes a set of View3D objects to file.

Uses of InterfaceIO in mgui.io.foreign.amira

Classes in mgui.io.foreign.amira that implement InterfaceIO

Modifier and Type	Class	Description
class	AmiraTractLoader

Uses of InterfaceIO in mgui.io.foreign.camino

Classes in mgui.io.foreign.camino that implement InterfaceIO

Modifier and Type	Class	Description
class	CaminoPipelineLoader
class	CaminoPipelineWriter
class	CaminoProjectLoader
class	CaminoProjectWriter

Uses of InterfaceIO in mgui.io.foreign.caret

Classes in mgui.io.foreign.caret that implement InterfaceIO

Modifier and Type	Class	Description
class	CaretAreaColourLoader	A hack to read Caret area colour files.
class	CaretAreaColourWriter	Writes a DiscreteColourMap to a Caret area colour file, which associates colours (RGB) with names.
class	CaretMetricLoader
class	CaretPaintLoader	Loads a Caret Paint file From Caret site: tag-version 1 tag-number-of-nodes 71723 tag-number-of-columns 5 tag-title tag-number-of-paint-names 148 tag-column-name 0 Lobes tag-column-name 1 Geography tag-column-name 2 Functional Stuff tag-column-name 3 Brodmann tag-column-name 4 Modality tag-BEGIN-DATA 0 ??? 1 SUL 2 DEEP_SUL ...
class	CaretPaintWriter	Writes a set of vertex-wise data columns to Caret paint files, binary format version 1.
class	CaretSurfaceLoader	Loads a Caret surface from topology and coordinate files, in either binary or ASCII format.
class	CaretSurfaceWriter	Writes a mesh to Caret format (two files, topo and coord)

Uses of InterfaceIO in mgui.io.foreign.duff

Classes in mgui.io.foreign.duff that implement InterfaceIO

Modifier and Type	Class	Description
class	DuffSurfaceLoader

Uses of InterfaceIO in mgui.io.foreign.freesurfer

Classes in mgui.io.foreign.freesurfer that implement InterfaceIO

Modifier and Type	Class	Description
class	FreesurferSurfaceLoader	Reads a Freesurfer surface file, binary or ASCII format.
class	FreesurferSurfaceWriter	Writes a Freesurfer surface to file, in binary or Ascii format.
class	FreesurferVertexDataLoader	Loads a Freesurfer surface data file.

Uses of InterfaceIO in mgui.io.foreign.fsl

Classes in mgui.io.foreign.fsl that implement InterfaceIO

Modifier and Type	Class	Description
class	FSLSurfaceLoader
class	FSLVolumeLoader	Loader for a FSL-style volume file (mgh/mgz).

Uses of InterfaceIO in mgui.io.foreign.interfile

Classes in mgui.io.foreign.interfile that implement InterfaceIO

Modifier and Type	Class	Description
class	InterfileLoader	Loads volume data stored in Interfile format.

Uses of InterfaceIO in mgui.io.foreign.minc

Classes in mgui.io.foreign.minc that implement InterfaceIO

Modifier and Type	Class	Description
class	MincSurfaceDataLoader
class	MincSurfaceDataWriter	Writes a Minc surface data file, which is simply a text file list of vertex-wise values, one per line, corresponding to a surface mesh.
class	MincSurfaceLoader	Reads a MINC obj file into a Mesh3D shape.
class	MincSurfaceWriter	Writes a mesh to disk in MINC obj format.
class	MincTransformLoader

Uses of InterfaceIO in mgui.io.foreign.mricro

Classes in mgui.io.foreign.mricro that implement InterfaceIO

Modifier and Type	Class	Description
class	MricroLutLoader
class	MricroLutWriter	Writes a discrete colour map to an MriCRO-compatible lookup table (LUT) file.

Uses of InterfaceIO in mgui.io.foreign.pajek

Classes in mgui.io.foreign.pajek that implement InterfaceIO

Modifier and Type	Class	Description
class	PajekGraphLoader	Loads a graph from the Pajek graph format (see http://pajek.imfm.si/doku.php).

Uses of InterfaceIO in mgui.io.foreign.trackvis

Classes in mgui.io.foreign.trackvis that implement InterfaceIO

Modifier and Type	Class	Description
class	TrackVisTractLoader

Uses of InterfaceIO in mgui.io.foreign.vol

Classes in mgui.io.foreign.vol that implement InterfaceIO

Modifier and Type	Class	Description
class	VolFileLoader

Uses of InterfaceIO in mgui.io.foreign.wavefront

Classes in mgui.io.foreign.wavefront that implement InterfaceIO

Modifier and Type	Class	Description
class	WavefrontSurfaceLoader	Loader for a Wavefront OBJ format surface mesh object.
class	WavefrontSurfaceWriter	Writer for a Wavefront OBJ format surface mesh object.

Uses of InterfaceIO in mgui.io.foreign.wunil

Classes in mgui.io.foreign.wunil that implement InterfaceIO

Modifier and Type	Class	Description
class	WunilVolumeLoader	Loader to load WUNIL IDF format volumes (University of Washington in St.

Uses of InterfaceIO in mgui.io.standard.gifti

Classes in mgui.io.standard.gifti that implement InterfaceIO

Modifier and Type	Class	Description
class	GiftiSurfaceLoader	Loads an XML-format GIFTI file.
class	GiftiSurfaceWriter	Writes a surface to Gifti format.

Uses of InterfaceIO in mgui.io.standard.imaging

Classes in mgui.io.standard.imaging that implement InterfaceIO

Modifier and Type	Class	Description
class	GreyFileLoader
class	ImageFileLoader
class	RGBFileLoader

Uses of InterfaceIO in mgui.io.standard.json

Classes in mgui.io.standard.json that implement InterfaceIO

Modifier and Type	Class	Description
class	JsonFileLoader	Loads a Json format file.
class	JsonFileWriter	Writes a JSON-format file.

Uses of InterfaceIO in mgui.io.standard.nifti

Classes in mgui.io.standard.nifti that implement InterfaceIO

Modifier and Type	Class	Description
class	NiftiVolumeLoader	File loader to read Analyze 7.5 format volume files.
class	NiftiVolumeWriter	Writer for Nifti-format volumes.

Uses of InterfaceIO in mgui.io.standard.xml

Classes in mgui.io.standard.xml that implement InterfaceIO

Modifier and Type	Class	Description
class	XMLWriter	Writes an XML object (i.e., any instance of XMLObject).

Uses of InterfaceIO in mgui.io.standard.xml.x3d

Classes in mgui.io.standard.xml.x3d that implement InterfaceIO

Modifier and Type	Class	Description
class	Vector3DFileLoader	General loader class for inputting 3D vector data.