Uses of Interface
mgui.resources.icons.IconObject

Packages that use IconObject

Package	Description
mgui.datasources	This package contains the core classes for data source functionality.
mgui.graphs.networks	Classes representing network graphs.
mgui.interfaces	This package contains all main/abstract interface objects (object which provides user interations) for ModelGUI.
mgui.interfaces.attributes	Provides a standard updatable attribute object which can fire events for all interface objects.
mgui.interfaces.attributes.video	Classes allowing video tasks to read/modify object attributes.
mgui.interfaces.cocomac	Provides interfaces with the CoCoMac database.
mgui.interfaces.console	Provides an interactive system console (currently view only).
mgui.interfaces.datasources	This package provides interface objects which allow the user to interface with the core data source classes.
mgui.interfaces.graphics	Provides graphical windows for user interaction with model objects.
mgui.interfaces.graphics.util	Utility classes operating on 2D and 3D graphics objects.
mgui.interfaces.graphics.video	Provides classes to generate videos from graphics windows.
mgui.interfaces.graphs	Provides an interface for user interaction with graph objects.
mgui.interfaces.io	This package contains all classes which perform input/output functions.
mgui.interfaces.layouts
mgui.interfaces.maps	Provides a set a maps for use by ModelGUI objects.
mgui.interfaces.models	Base classes for specifying dynamic models.
mgui.interfaces.neuro
mgui.interfaces.neuro.imaging.camino
mgui.interfaces.pipelines	This package provides interfaces for user interaction with pipelines.
mgui.interfaces.pipelines.libraries
mgui.interfaces.plots	Provides 2D and 3D plotting functionality.
mgui.interfaces.plots.mgui
mgui.interfaces.plots.osp	Plots using the Open Source Physics (OSP) library.
mgui.interfaces.plots.sgt	Plots using the Scientific Graphics Toolkit (SGT) library.
mgui.interfaces.projects	Provides an interface for projects, which specify file/URL organization and I/O operations
mgui.interfaces.queries	Provides querying functionality for interface objects.
mgui.interfaces.shapes	This package provides interfaces for user interaction with shapes and shape models.
mgui.interfaces.shapes.dynamic
mgui.interfaces.shapes.graphs
mgui.interfaces.shapes.mesh
mgui.interfaces.shapes.neuro
mgui.interfaces.shapes.queries
mgui.interfaces.shapes.selection
mgui.interfaces.shapes.video
mgui.interfaces.shapes.volume
mgui.interfaces.tables	Provides object interaction via a JTable.
mgui.interfaces.tools	Provides a framework for "tool" objects, which allow the user to modify or interrogate model objects.
mgui.interfaces.tools.datasources
mgui.interfaces.tools.dialogs
mgui.interfaces.tools.graphics
mgui.interfaces.tools.graphs
mgui.interfaces.tools.layouts
mgui.interfaces.tools.plots
mgui.interfaces.tools.queries
mgui.interfaces.tools.shapes
mgui.interfaces.tools.shapes.util
mgui.interfaces.trees	Provides object interaction via a JTree
mgui.interfaces.variables
mgui.io	This package contains all classes which perform input/output functions.
mgui.io.domestic	Input/output operations for "domestic" (mgui-specific) data formats.
mgui.io.domestic.datasources
mgui.io.domestic.graphs
mgui.io.domestic.maps
mgui.io.domestic.network
mgui.io.domestic.pipelines
mgui.io.domestic.printing
mgui.io.domestic.shapes
mgui.io.domestic.variables
mgui.io.domestic.videos
mgui.io.domestic.views
mgui.io.foreign.amira
mgui.io.foreign.camino
mgui.io.foreign.caret
mgui.io.foreign.duff
mgui.io.foreign.freesurfer
mgui.io.foreign.fsl
mgui.io.foreign.interfile
mgui.io.foreign.minc
mgui.io.foreign.mricro
mgui.io.foreign.pajek
mgui.io.foreign.trackvis
mgui.io.foreign.vol
mgui.io.foreign.wavefront
mgui.io.foreign.wunil
mgui.io.standard.gifti
mgui.io.standard.imaging
mgui.io.standard.json
mgui.io.standard.nifti
mgui.io.standard.xml
mgui.io.standard.xml.x3d
mgui.morph.sections
mgui.neuro.graphs
mgui.neuro.imaging.camino
mgui.pipelines	Provides a framework for defining and running processing pipelines in the ModelGUI environment.
mgui.resources.icons

Uses of IconObject in mgui.datasources

Subinterfaces of IconObject in mgui.datasources

Modifier and Type	Interface	Description
interface	DataSourceItem	An item (i.e., table or query) in a DataSource.

Classes in mgui.datasources that implement IconObject

Modifier and Type	Class	Description
class	DataConnection	Specifies a basic JDBC database connection, including: JDBC driver URL Connection name File location Login Password //TODO implement security on this
class	DataQuery	Represents an SQL query.
class	DataSource	Acts as a port into the JDBC interface.
class	DataTable	General data table object specifying the organization of data into fields.
class	DataTableSet	Object stores a list of DataTable objects, all representing tables in a single DataSource
class	LinkedDataStream<T extends java.lang.Comparable<T>>	Provides a link to a data source, using a unique field as the link field.

Uses of IconObject in mgui.graphs.networks

Classes in mgui.graphs.networks that implement IconObject

Modifier and Type	Class	Description
class	AbstractNetworkGraph	A graph which explicitly represents a connected network.

Uses of IconObject in mgui.interfaces

Classes in mgui.interfaces that implement IconObject

Modifier and Type	Class	Description
class	InterfaceButtonPanel	Interface panel displaying a list of tool-related buttons.
class	InterfaceComboPanel	Interface panel allowing for the display of multiple interface panels, selected by a combo box.
class	InterfaceDisplayPanel	Main interface panel for displaying data graphically.
class	InterfaceHideablePanel
class	InterfaceListPanel
class	InterfacePanel	Base class for all Swing panels (i.e., extensions of JPanel) to be show in an instance of InterfaceDisplayPanel.
class	InterfaceSelectionPanel	Provides an interface for creating and managing shape selection sets.
class	InterfaceSplitPanel	Displays two InterfaceGraphicWindows, split either horizontally or vertically.
class	InterfaceStatusBarPanel	Interface panel which acts as a status bar for a given instance of InterfaceFrame.
class	InterfaceTabbedDisplayPanel	This class extends InterfaceDisplayPanel in order to provide a tabbed window pane, similar to a typical web browser.
class	InterfaceWorkspace	A Workspace acts as a container for all data models and graphics windows.
static class	InterfaceWorkspace.CollectionTreeNode

Uses of IconObject in mgui.interfaces.attributes

Classes in mgui.interfaces.attributes that implement IconObject

Modifier and Type	Class	Description
class	AttributeList	Stores a list of Attribute objects, and provides methods to access and modify them, as well as set methods to intersect and union with other lists.
class	InterfaceAttributePanel	Panel to display and modify a given AttributeList.

Uses of IconObject in mgui.interfaces.attributes.video

Classes in mgui.interfaces.attributes.video that implement IconObject

Modifier and Type	Class	Description
class	AttributeObjectVideoTaskDialogPanel	Panel for defining an AttributeObjectTask.

Uses of IconObject in mgui.interfaces.cocomac

Classes in mgui.interfaces.cocomac that implement IconObject

Modifier and Type	Class	Description
class	InterfaceCoCoMacPanel

Uses of IconObject in mgui.interfaces.console

Classes in mgui.interfaces.console that implement IconObject

Modifier and Type	Class	Description
class	InterfaceConsoleDisplay	Window which displays console output.

Uses of IconObject in mgui.interfaces.datasources

Classes in mgui.interfaces.datasources that implement IconObject

Modifier and Type	Class	Description
class	InterfaceDatasourcePanel	Interface panel for displaying, querying, and managing tables and queries in a connected data source.

Uses of IconObject in mgui.interfaces.graphics

Classes in mgui.interfaces.graphics that implement IconObject

Modifier and Type	Class	Description
class	InterfaceGraphic<T extends Tool>	The base class for all graphical interface windows.
class	InterfaceGraphic2D	Graphical interface window for display 2D shapes (Shape2DInt).
class	InterfaceGraphic3D	Interface class for Java3D display.
class	InterfaceGraphicPanel	Panel to define the display windows in InterfaceDisplayPanel, including: 1.
class	InterfaceGraphicWindow	Provides a title for an InterfaceGraphic window, which is a button.
class	View3D	Represents a specific 3D view, defined by a frozen Camera3D object.

Uses of IconObject in mgui.interfaces.graphics.util

Classes in mgui.interfaces.graphics.util that implement IconObject

Modifier and Type	Class	Description
class	Axes3D	Renders 3D axes on a 3D window.

Uses of IconObject in mgui.interfaces.graphics.video

Classes in mgui.interfaces.graphics.video that implement IconObject

Modifier and Type	Class	Description
class	RotateView3DTaskDialogPanel	Dialog panel for a RotateView3DTask.
class	SetView3DTaskDialogPanel	Dialog panel for a SetView3DTask.
class	VideoTaskDialogPanel	A dialog defining a VideoTask object.

Uses of IconObject in mgui.interfaces.graphs

Classes in mgui.interfaces.graphs that implement IconObject

Modifier and Type	Class	Description
class	DefaultGraph	Default implementation of a Graph in ModelGUI.
class	InterfaceAbstractGraph	Abstract representation of a Graph in modelGUI; extends Jung's SparseGraph
class	InterfaceGraphDisplay	Displays graphs and allows user interaction with them.
class	InterfaceGraphDisplayTitle

Uses of IconObject in mgui.interfaces.io

Classes in mgui.interfaces.io that implement IconObject

Modifier and Type	Class	Description
class	InterfaceFilePanel	InterfacePanel providing a standard interface for input & output operations.
class	InterfaceIOType	Specifies an Input/Output interface object; e.g., file loaders or writers.

Uses of IconObject in mgui.interfaces.layouts

Classes in mgui.interfaces.layouts that implement IconObject

Modifier and Type	Class	Description
class	InterfaceLayoutPanel	Interface panel allowing interaction with a 2D Layout object.
class	InterfaceLayoutWindow	Provides a window panel which specifies (via InterfaceLayoutObject) and renders a layout containing graphical objects from existing windows or objects.

Uses of IconObject in mgui.interfaces.maps

Classes in mgui.interfaces.maps that implement IconObject

Modifier and Type	Class	Description
class	Camera3D	Represents a particular camera position in R3, defined by a center of rotation, line of sight vector, and a distance.
class	Camera3D.CameraLightSource
class	ColourMap	Abstract class for mapping values (instances of Comparable) to colours.
class	ContinuousColourBar	Component displays a continuous colour map as a horizontal bar portraying the colour gradient between anchors.
class	ContinuousColourMap	Maps colours to values based upon a set of anchors (expressed on the range [0:1]) and an interpolator.
class	DiscreteColourMap	Colour map for discrete 1-to-1 mappings (integers to colours).
class	DiscreteColourMapLayout	Layout which displays a discrete colour map as a list of colour boxes, names, and optionally descriptions and indexes.
class	InterfaceMapPanel	Panel to create and modify various maps, including colour maps and value maps.
class	NameMap	Associates a name with an integer.

Uses of IconObject in mgui.interfaces.models

Classes in mgui.interfaces.models that implement IconObject

Modifier and Type	Class	Description
class	InterfaceDynamicModelPanel

Uses of IconObject in mgui.interfaces.neuro

Classes in mgui.interfaces.neuro that implement IconObject

Modifier and Type	Class	Description
class	InterfaceCorticalThicknessPanel	Panel providing an interface to cortical thickness databases and subject databases.

Uses of IconObject in mgui.interfaces.neuro.imaging.camino

Classes in mgui.interfaces.neuro.imaging.camino that implement IconObject

Modifier and Type	Class	Description
class	CaminoProcess	Extends JavaProcess specifically for Camino processes.
class	InterfaceCaminoPanel

Uses of IconObject in mgui.interfaces.pipelines

Classes in mgui.interfaces.pipelines that implement IconObject

Modifier and Type	Class	Description
class	InterfacePipelinesPanel	Provides a GUI for: creating, viewing, modifying, deleting, and executing pipelines.

Uses of IconObject in mgui.interfaces.pipelines.libraries

Classes in mgui.interfaces.pipelines.libraries that implement IconObject

Modifier and Type	Class	Description
class	PipelineProcessLibrary	Represents a collection of PipelineProcesses, typically referring to the same underlying software library.

Uses of IconObject in mgui.interfaces.plots

Classes in mgui.interfaces.plots that implement IconObject

Modifier and Type	Class	Description
class	InterfacePlot<T extends MguiNumber>	Represents an abstract plot object.
class	InterfacePlotDisplay	General graphic interface for all plots.
class	InterfacePlotMulti	Allows the display of multiple plots in a single InterfacePlot panel.
class	InterfacePlotPanel

Uses of IconObject in mgui.interfaces.plots.mgui

Classes in mgui.interfaces.plots.mgui that implement IconObject

Modifier and Type	Class	Description
class	InterfacePlotMgui	General class for displaying ModelGUI plots.
class	MatrixImagePlot	Plots a matrix as an image, with a specified colour map.

Uses of IconObject in mgui.interfaces.plots.osp

Classes in mgui.interfaces.plots.osp that implement IconObject

Modifier and Type	Class	Description
class	InterfacePlotOsp	General class for displaying Open Source Physics (OSP) plots.
class	InterfaceStripChart	Displays an OSP StripChart; i.e., time vs.

Uses of IconObject in mgui.interfaces.plots.sgt

Classes in mgui.interfaces.plots.sgt that implement IconObject

Modifier and Type	Class	Description
class	InterfacePlotSgt<T extends SgtPlotObject<?>>	Abstract class for displaying Scientific Graphics Toolkit (SGT) plots.
class	SgtMultilinePlot	Displays a line plot using the Scientific Graphics Toolkit (SGT) library.
class	SgtScatterplot	Displays an XY scatter plot using the Scientific Graphics Toolkit (SGT) library.

Uses of IconObject in mgui.interfaces.projects

Classes in mgui.interfaces.projects that implement IconObject

Modifier and Type	Class	Description
class	InterfaceProject	Represents a modelGUI project, which specifies an organizational structure for persistent data related to a common project.
class	InterfaceProjectPanel	Panel which provides a user interface for InterfaceProjects.
class	ProjectDataItem	Specifies a data item in a modelGUI project, including its name, its I/O classes, and its filename form (a pattern identifying the location or URL of the item).
class	ProjectDirectory	Specifies a project directory, including its subdirectories and all prespecified data items that it contains.
class	ProjectInstance	Specifies an element instance in a project (e.g., a subject).

Uses of IconObject in mgui.interfaces.queries

Classes in mgui.interfaces.queries that implement IconObject

Modifier and Type	Class	Description
class	InterfaceQuery	Interface for a class which allows it to query a given InterfaceQueryObject.
class	InterfaceQueryPanel	Provides an interface for queries; selecting and launching query tools, displaying query results, etc.

Uses of IconObject in mgui.interfaces.shapes

Classes in mgui.interfaces.shapes that implement IconObject

Modifier and Type	Class	Description
class	BoolPolygon2DInt
class	Box3DInt
class	Circle2DInt
class	Ellipse2DInt	Interface for a Ellipse2D shape.
class	Image2DInt	Displays an image inside a Rect2D shape.
class	Image3DInt	Draws a rectangular planar image in R3.
class	InterfacePolygonPanel
class	InterfaceSectionSetPanel	Updated version of InterfaceSectionSet that sets a current section set for a given Graphic2D window, and sets current sections for that window.
class	InterfaceShape	Abstract base class for all shape interfaces (ShapeInts).
class	InterfaceShape.VertexDataSet
class	InterfaceShapesPanel	Interface panel providing a GUI for general shape-related functions.
class	IntPolygon2DInt
class	Line2DInt
class	LPolygon2DInt	Light 2D polygon with no attributes (attributes are assignable)
class	LPolygon3DInt
class	Mesh2DInt	A 2D representation of a Mesh3DInt object.
class	Mesh3DInt	Interface for a Mesh3D shape.
class	Plane3DInt
class	Point2DInt
class	PointSet2DInt	Shape interface for a set of 2D vertices.
class	PointSet3DInt	Shape interface for a set of 3D points.
class	Polygon2DInt	Interface for a 2D polygon.
class	Polygon3DInt	Interface for a 3D polygon object.
class	PolygonSet3DInt	Interface for a set of 3D polygons.
class	Rect2DInt	Represents a 2D rectangle.
class	Rect3DInt
class	SectionSet2DInt	Provides a 2D representation of a 3D section set, where it intersects a particular plane.
class	SectionSet3DInt	Represents a set of parallel sections, based upon a reference plane (thisShape), and a spacing value.
class	Shape2DInt	Base class for all interfaces to 2D geometrical shapes.
class	Shape2DSelectionSet
class	Shape3DInt	Base class for all Shape3D interface objects.
class	ShapeModel3D	The top container for all shape interfaces.
class	ShapeSet2DInt	Represents a set of Shape2DInt objects.
class	ShapeSet3DInt	Represents a set of Shape3DInt objects.
class	ShapeStatsPanel	Interface panel for performing statistical procedures on shapes.
class	TensorVolume3DInt
class	TestTextureInt
class	Text2DInt
class	Text2DIntMouseCoords
class	Vector2DInt
class	Vector3DInt
class	VectorSet3DInt
class	VertexDataColumn	Encapsulates a column of vertex-wise numerical data.
class	Volume2DInt	2D sectional representation of a Volume3DInt.
class	Volume3DInt	Class acting as interface to a volume shape, as defined by the Grid3D geometry class.
class	VolumeSet3DInt	A set of Volume3DInt objects which render as an overlay image.
class	X3DScene3DInt

Uses of IconObject in mgui.interfaces.shapes.dynamic

Classes in mgui.interfaces.shapes.dynamic that implement IconObject

Modifier and Type	Class	Description
class	Volume4DInt	Volume with 3 space and 1 time dimension.

Uses of IconObject in mgui.interfaces.shapes.graphs

Classes in mgui.interfaces.shapes.graphs that implement IconObject

Modifier and Type	Class	Description
class	Graph2DInt	Graph shape represented in R2.
class	Graph3DInt	Represents a graph as a 3D shape.

Uses of IconObject in mgui.interfaces.shapes.mesh

Classes in mgui.interfaces.shapes.mesh that implement IconObject

Modifier and Type	Class	Description
class	InterfaceMeshPanel	Provides an interface to Mesh3DInt objects.

Uses of IconObject in mgui.interfaces.shapes.neuro

Classes in mgui.interfaces.shapes.neuro that implement IconObject

Modifier and Type	Class	Description
class	CorticalHemisphereSet3DInt
class	CorticalSurfaceSet3DInt	Representation of a set of cortical surfaces, including grey matter (GM) interfaces with white matter (WM) and cerebrospinal fluid (CSF).
class	InterfaceNeuroMeshPanel
class	InterfaceNeuroMeshPanel2

Uses of IconObject in mgui.interfaces.shapes.queries

Classes in mgui.interfaces.shapes.queries that implement IconObject

Modifier and Type	Class	Description
class	InterfaceShapeQuery	Base class for all shape queries.
class	ShapeSummaryQuery	Extension of InterfaceShapeQuery to provide summary values for a shape, or a vertex selection within that shape.

Uses of IconObject in mgui.interfaces.shapes.selection

Classes in mgui.interfaces.shapes.selection that implement IconObject

Modifier and Type	Class	Description
class	InterfaceSelectionSet	Interface panel providing user interaction with selection sets.

Uses of IconObject in mgui.interfaces.shapes.video

Classes in mgui.interfaces.shapes.video that implement IconObject

Modifier and Type	Class	Description
class	ChangeSectionVideoTaskDialogPanel	Dialog panel for a ChangeSectionVideoTask.

Uses of IconObject in mgui.interfaces.shapes.volume

Classes in mgui.interfaces.shapes.volume that implement IconObject

Modifier and Type	Class	Description
class	GridVertexDataColumn	Vertex data column defined for a Volume3DInt.
class	InterfaceVolumePanel	Interface panel which allows the user to interact with Volume3DInt objects.
class	InterfaceVolumeSetPanel	Panel to provide an interface with a volume overlay set.

Uses of IconObject in mgui.interfaces.tables

Classes in mgui.interfaces.tables that implement IconObject

Modifier and Type	Class	Description
class	InterfaceDataTable	Interface panel for displaying a data table or query.
class	InterfaceDataTableTitle

Uses of IconObject in mgui.interfaces.tools

Subinterfaces of IconObject in mgui.interfaces.tools

Modifier and Type	Interface	Description
interface	Tool	Interface for any class which performs an operation or set of operations on ModelGUI objects, which involves user interaction.

Classes in mgui.interfaces.tools that implement IconObject

Modifier and Type	Class	Description
class	InterfaceTool2DPanel	Deprecated.
class	InterfaceToolPanel	Panel displaying buttons for various tools, categorized.

Uses of IconObject in mgui.interfaces.tools.datasources

Classes in mgui.interfaces.tools.datasources that implement IconObject

Modifier and Type	Class	Description
class	ToolDataSource	Tool operating on DataSourcePanel windows.

Uses of IconObject in mgui.interfaces.tools.dialogs

Classes in mgui.interfaces.tools.dialogs that implement IconObject

Modifier and Type	Class	Description
class	DialogTool	Abstract class to be inherited by all tools which operate using a modal dialog box.

Uses of IconObject in mgui.interfaces.tools.graphics

Classes in mgui.interfaces.tools.graphics that implement IconObject

Modifier and Type	Class	Description
class	Tool2D	Abstract class for a Tool which operates on an InterfaceGraphic2D window.
class	Tool3D	Abstract class for a tool to be used on an InterfaceGraphic3D window.
class	ToolDefine3DGrid2D	Tool to define a 3D grid on a 2D window.
class	ToolDZoom2D
class	ToolMouseOrbit3D	Tool to allow user to navigate a Graphic3D interface using the mouse.
class	ToolPan2D
class	ToolWindowZoom2D	Interactive tool which allows the user to zoom on a window within the current view.
class	ToolZoomExt2D

Uses of IconObject in mgui.interfaces.tools.graphs

Classes in mgui.interfaces.tools.graphs that implement IconObject

Modifier and Type	Class	Description
class	ToolGraph	Abstract class to be inherited by tools which operate on graphs; i.e, through InterfaceGraphDisplay.
class	ToolGraphImage	Tool which inserts or appends an image to a graph window.
class	ToolGraphTransform	Acts as a bridge between the mgui Tool interface and Jung's view control mouse plugins.

Uses of IconObject in mgui.interfaces.tools.layouts

Classes in mgui.interfaces.tools.layouts that implement IconObject

Modifier and Type	Class	Description
class	ToolLayout2D	Tool operating on a InterfaceLayoutObject.

Uses of IconObject in mgui.interfaces.tools.plots

Classes in mgui.interfaces.tools.plots that implement IconObject

Modifier and Type	Class	Description
class	ToolPlot

Uses of IconObject in mgui.interfaces.tools.queries

Subinterfaces of IconObject in mgui.interfaces.tools.queries

Modifier and Type	Interface	Description
interface	QueryTool	Interface for all query tools.

Uses of IconObject in mgui.interfaces.tools.shapes

Classes in mgui.interfaces.tools.shapes that implement IconObject

Modifier and Type	Class	Description
class	ToolCreateEllipse2D
class	ToolCreateImage2D	Tool allows user to select a file or url pointing to an image, and specify rectangular bounds for that image in model space.
class	ToolCreateImage3D	Tool to create a 3D image on a 2D window.
class	ToolCreateMeshFromPolylines
class	ToolCreatePolygon2D	Allows the user to creates a Polygon2D shape.
class	ToolCreateRect2D
class	ToolCutMeshWithPlane	Tool to cut a mesh into parts by intersecting it with a Plane3D object.
class	ToolGetConvexHull2D
class	ToolGetMeshIntersectionPolylines
class	ToolQueryShape2D	Tool allowing point-and-click vertex-wise querying of 2D objects, for a InterfaceGraphic3D window.
class	ToolQueryShape3D	Tool allowing point-and-click vertex-wise querying of 3D objects, for a InterfaceGraphic3D window.
class	ToolReversePolygon2D
class	ToolRuler2D	Allows the user to measure distance on a 2D window, along a path with N nodes.
class	ToolSelectMeshBoundaryNodes
class	ToolSelectNodesWithPolygon	Tool specifies options with a dialog and then calls an inner class instance of Tool3D to allow the user to select nodes on the Canvas3D.
class	ToolSelectRegionBoundaryNodes	Tool selects region boundary nodes of a mesh region (defined by its vertex values) based upon a vertex selected by a mouse click.
class	ToolSelectShape2D	2D tool for selecting/deselcting shapes.
class	ToolSelectShape3D	3D tool for selecting/deselcting shapes.
class	ToolTestInternalPoint2D

Uses of IconObject in mgui.interfaces.tools.shapes.util

Classes in mgui.interfaces.tools.shapes.util that implement IconObject

Modifier and Type	Class	Description
class	RulerDialog	Dialog to be displayed when executing a Ruler tool (ToolRuler2D or ToolRuler3D).

Uses of IconObject in mgui.interfaces.trees

Classes in mgui.interfaces.trees that implement IconObject

Modifier and Type	Class	Description
class	InterfaceTreePanel	Provides a tree interface for model objects

Uses of IconObject in mgui.interfaces.variables

Classes in mgui.interfaces.variables that implement IconObject

Modifier and Type	Class	Description
class	MatrixInt	Interface for a 2D matrix, represented internally as a Jama matrix of doubles.
class	StringVectorInt	Stores an array of String objects as a variable.
class	VariableInt<T>	An interface to a variable object.
class	VectorInt<T extends MguiNumber>	Represents an array of numeric values.

Uses of IconObject in mgui.io

Subinterfaces of IconObject in mgui.io

Modifier and Type	Interface	Description
interface	InterfaceIO	Interface for all classes performing I/O operations.

Classes in mgui.io that implement IconObject

Modifier and Type	Class	Description
class	FileLoader	Base class for all file loader classes.
class	FileWriter	Base class for all file writer classes.

Uses of IconObject in mgui.io.domestic

Classes in mgui.io.domestic that implement IconObject

Modifier and Type	Class	Description
class	WorkspaceWriter	Writes a workspace (i.e., an instance of InterfaceWorkspace) to XML.

Uses of IconObject in mgui.io.domestic.datasources

Classes in mgui.io.domestic.datasources that implement IconObject

Modifier and Type	Class	Description
class	DataSourceDriverLoader	Loader for a data source (JDBC) driver specification file.
class	DataSourceDriverWriter	Writer for a data source (JDBC) driver file.
class	DataSourceLoader	Loads a Data Source object.
class	DataSourceWriter	Writes a Data Source object to file.
class	ExportDataTableExcelWriter	Writes data from a data source DataItem to Microsoft Excel format.
class	ExportDataTableTextWriter	Writes data from a data source DataItem to a delimited text file.
class	ExportDataTableWriter	Abstract class for extension by writers which export data from a DataSourceItem to an external format.
class	ImportDataTableLoader	Imports data from an external format into a new DataSource table.
class	ImportDataTableTextLoader	Imports data from a delimited text file into a new DataSource table.

Uses of IconObject in mgui.io.domestic.graphs

Classes in mgui.io.domestic.graphs that implement IconObject

Modifier and Type	Class	Description
class	GraphFileLoader	Abstract loader class for loading graphs.
class	GraphFileWriter	Abstract class for all graph writers.

Uses of IconObject in mgui.io.domestic.maps

Classes in mgui.io.domestic.maps that implement IconObject

Modifier and Type	Class	Description
class	ColourMapLoader	Base class for loading a colour map from file.
class	ContinuousColourMapLoader	Loads a comma-delimited continuous colour map.
class	ContinuousColourMapWriter	Writes a comma-delimited continuous colour map.
class	DiscreteColourMapLoader	Loads a discrete colour map from either delimited ASCII or XML.
class	DiscreteColourMapWriter	Writer for discrete colour maps.
class	NameMapLoader	Reads a name map from file.
class	NameMapWriter	Writes a name map to an delimited ASCII file.
class	Vector3ColourMap	Provides a colour mapping for a vector of size three, such that each element of the vector has a colour assignment, and the resulting colour is a weighting of these colours by x, y, z components:

Uses of IconObject in mgui.io.domestic.network

Classes in mgui.io.domestic.network that implement IconObject

Modifier and Type	Class	Description
class	CorticalNetworkMatrixLoader	Reads an ASCII matrix representing a connected network into a cortical network, assigning weights based upon a specified range (mapped to the continuous range [0.0:1.0]).

Uses of IconObject in mgui.io.domestic.pipelines

Classes in mgui.io.domestic.pipelines that implement IconObject

Modifier and Type	Class	Description
class	PipelineLoader	Loads a pipeline (or multiple pipelines) from file.
class	PipelineProcessLibraryLoader	Loads a PipelineProcessLibrary from file.
class	PipelineProcessLibraryWriter	Writes a PipelineProcessLibrary to file.
class	PipelineWriter	Writes an InterfacePipeline instance to file.

Uses of IconObject in mgui.io.domestic.printing

Classes in mgui.io.domestic.printing that implement IconObject

Modifier and Type	Class	Description
class	StlWriter	Writes a Mesh3D object to STL format, suitable for 3D printing.

Uses of IconObject in mgui.io.domestic.shapes

Classes in mgui.io.domestic.shapes that implement IconObject

Modifier and Type	Class	Description
class	Graph3DWriter	Writer for a Graph3DInt object; default is to write using the domestic XML representation.
class	InterfaceShapeLoader	Abstract loader class for all loaders which load InterfaceShape objects.
class	InterfaceShapeWriter	General writer for an InterfaceShape object.
class	Mesh3DLoader	Deafult loader for loading a Mesh3DInt object.
class	Mesh3DWriter	Default writer for a Mesh3DInt object.
class	Point2DShapeLoader
class	PointSet2DLoader	Loader class for PointSet2DInt objects.
class	PointSet3DDataLoader
class	PointSet3DLoader	Domestic loader for a 3D point set.
class	PolygonSet3DLoader	Loads a set of 3D polygon objects (*.poly3d) from text.
class	ShapeDataLoader	Loads vertex-wise data from tabular text files into shapes.
class	ShapeModel3DLoader	Loader for a ShapeModel3D.
class	ShapeModel3DWriter	Writes a ShapeModel3D object to XML.
class	ShapeXmlLoader	Loader for an InterfaceShape stored in domestic XML format.
class	ShapeXmlWriter	Writes an InterfaceShape object to XML.
class	SurfaceDataFileLoader	Loads vertex-wise data into an InterfaceShape object.
class	SurfaceDataFileWriter
class	SurfaceFileLoader	Abstract loader class for all loaders which load Mesh3DInt objects.
class	SurfaceFileWriter	Represents an abstract surface file writer object.
class	VectorDataLoader
class	VectorSet3DLoader
class	VolumeFileLoader	Loader for reading from a volume (3D grid) file into a Volume3DInt object.
class	VolumeFileWriter	Writes a Volume3DInt to file.

Uses of IconObject in mgui.io.domestic.variables

Classes in mgui.io.domestic.variables that implement IconObject

Modifier and Type	Class	Description
class	DefaultMatrixFileLoader	Default implementation of a matrix loader.
class	DefaultMatrixFileWriter
class	MatrixFileLoader
class	MatrixFileWriter	Base abstract class for writing a matrix to file.
class	MatrixTransformLoader
class	StringVectorLoader	Loader class to input an array of String objects into an StringVectorInt instance.

Uses of IconObject in mgui.io.domestic.videos

Classes in mgui.io.domestic.videos that implement IconObject

Modifier and Type	Class	Description
class	ImageStackVideoWriter	Outputs a Video to a stack of images which can be used to compile a video using a utility such as VirtualDub.
class	VideoLoader
class	VideoWriter
class	VideoXMLLoader

Uses of IconObject in mgui.io.domestic.views

Classes in mgui.io.domestic.views that implement IconObject

Modifier and Type	Class	Description
class	View3DLoader	Loads a set of View3D objects from an XML file.
class	View3DWriter	Writes a set of View3D objects to file.

Uses of IconObject in mgui.io.foreign.amira

Classes in mgui.io.foreign.amira that implement IconObject

Modifier and Type	Class	Description
class	AmiraTractLoader

Uses of IconObject in mgui.io.foreign.camino

Classes in mgui.io.foreign.camino that implement IconObject

Modifier and Type	Class	Description
class	CaminoPipelineLoader
class	CaminoPipelineWriter
class	CaminoProjectLoader
class	CaminoProjectWriter

Uses of IconObject in mgui.io.foreign.caret

Classes in mgui.io.foreign.caret that implement IconObject

Modifier and Type	Class	Description
class	CaretAreaColourLoader	A hack to read Caret area colour files.
class	CaretAreaColourWriter	Writes a DiscreteColourMap to a Caret area colour file, which associates colours (RGB) with names.
class	CaretMetricLoader
class	CaretPaintLoader	Loads a Caret Paint file From Caret site: tag-version 1 tag-number-of-nodes 71723 tag-number-of-columns 5 tag-title tag-number-of-paint-names 148 tag-column-name 0 Lobes tag-column-name 1 Geography tag-column-name 2 Functional Stuff tag-column-name 3 Brodmann tag-column-name 4 Modality tag-BEGIN-DATA 0 ??? 1 SUL 2 DEEP_SUL ...
class	CaretPaintWriter	Writes a set of vertex-wise data columns to Caret paint files, binary format version 1.
class	CaretSurfaceLoader	Loads a Caret surface from topology and coordinate files, in either binary or ASCII format.
class	CaretSurfaceWriter	Writes a mesh to Caret format (two files, topo and coord)

Uses of IconObject in mgui.io.foreign.duff

Classes in mgui.io.foreign.duff that implement IconObject

Modifier and Type	Class	Description
class	DuffSurfaceLoader

Uses of IconObject in mgui.io.foreign.freesurfer

Classes in mgui.io.foreign.freesurfer that implement IconObject

Modifier and Type	Class	Description
class	FreesurferSurfaceLoader	Reads a Freesurfer surface file, binary or ASCII format.
class	FreesurferSurfaceWriter	Writes a Freesurfer surface to file, in binary or Ascii format.
class	FreesurferVertexDataLoader	Loads a Freesurfer surface data file.

Uses of IconObject in mgui.io.foreign.fsl

Classes in mgui.io.foreign.fsl that implement IconObject

Modifier and Type	Class	Description
class	FSLSurfaceLoader
class	FSLVolumeLoader	Loader for a FSL-style volume file (mgh/mgz).

Uses of IconObject in mgui.io.foreign.interfile

Classes in mgui.io.foreign.interfile that implement IconObject

Modifier and Type	Class	Description
class	InterfileLoader	Loads volume data stored in Interfile format.

Uses of IconObject in mgui.io.foreign.minc

Classes in mgui.io.foreign.minc that implement IconObject

Modifier and Type	Class	Description
class	MincSurfaceDataLoader
class	MincSurfaceDataWriter	Writes a Minc surface data file, which is simply a text file list of vertex-wise values, one per line, corresponding to a surface mesh.
class	MincSurfaceLoader	Reads a MINC obj file into a Mesh3D shape.
class	MincSurfaceWriter	Writes a mesh to disk in MINC obj format.
class	MincTransformLoader

Uses of IconObject in mgui.io.foreign.mricro

Classes in mgui.io.foreign.mricro that implement IconObject

Modifier and Type	Class	Description
class	MricroLutLoader
class	MricroLutWriter	Writes a discrete colour map to an MriCRO-compatible lookup table (LUT) file.

Uses of IconObject in mgui.io.foreign.pajek

Classes in mgui.io.foreign.pajek that implement IconObject

Modifier and Type	Class	Description
class	PajekGraphLoader	Loads a graph from the Pajek graph format (see http://pajek.imfm.si/doku.php).

Uses of IconObject in mgui.io.foreign.trackvis

Classes in mgui.io.foreign.trackvis that implement IconObject

Modifier and Type	Class	Description
class	TrackVisTractLoader

Uses of IconObject in mgui.io.foreign.vol

Classes in mgui.io.foreign.vol that implement IconObject

Modifier and Type	Class	Description
class	VolFileLoader

Uses of IconObject in mgui.io.foreign.wavefront

Classes in mgui.io.foreign.wavefront that implement IconObject

Modifier and Type	Class	Description
class	WavefrontSurfaceLoader	Loader for a Wavefront OBJ format surface mesh object.
class	WavefrontSurfaceWriter	Writer for a Wavefront OBJ format surface mesh object.

Uses of IconObject in mgui.io.foreign.wunil

Classes in mgui.io.foreign.wunil that implement IconObject

Modifier and Type	Class	Description
class	WunilVolumeLoader	Loader to load WUNIL IDF format volumes (University of Washington in St.

Uses of IconObject in mgui.io.standard.gifti

Classes in mgui.io.standard.gifti that implement IconObject

Modifier and Type	Class	Description
class	GiftiSurfaceLoader	Loads an XML-format GIFTI file.
class	GiftiSurfaceWriter	Writes a surface to Gifti format.

Uses of IconObject in mgui.io.standard.imaging

Classes in mgui.io.standard.imaging that implement IconObject

Modifier and Type	Class	Description
class	GreyFileLoader
class	ImageFileLoader
class	RGBFileLoader

Uses of IconObject in mgui.io.standard.json

Classes in mgui.io.standard.json that implement IconObject

Modifier and Type	Class	Description
class	JsonFileLoader	Loads a Json format file.
class	JsonFileWriter	Writes a JSON-format file.

Uses of IconObject in mgui.io.standard.nifti

Classes in mgui.io.standard.nifti that implement IconObject

Modifier and Type	Class	Description
class	NiftiVolumeLoader	File loader to read Analyze 7.5 format volume files.
class	NiftiVolumeWriter	Writer for Nifti-format volumes.

Uses of IconObject in mgui.io.standard.xml

Classes in mgui.io.standard.xml that implement IconObject

Modifier and Type	Class	Description
class	XMLWriter	Writes an XML object (i.e., any instance of XMLObject).

Uses of IconObject in mgui.io.standard.xml.x3d

Classes in mgui.io.standard.xml.x3d that implement IconObject

Modifier and Type	Class	Description
class	Vector3DFileLoader	General loader class for inputting 3D vector data.

Uses of IconObject in mgui.morph.sections

Classes in mgui.morph.sections that implement IconObject

Modifier and Type	Class	Description
class	InterfaceMorphPanel
class	InterfaceMorphPanel2
class	InterfaceRadialRep
class	InterfaceRadialRep2
class	MorphSections3DInt	Class representing a set of intermediate sections (subsections), such that each subsection holds an iterative morphing representation from some source shape to some target shape.
class	RadialRep2DInt

Uses of IconObject in mgui.neuro.graphs

Classes in mgui.neuro.graphs that implement IconObject

Modifier and Type	Class	Description
class	CorticalNetworkGraph
class	NeuralNetGraph	Extension of JUNG's DirectedSparseGraph designed to specifically represent instances of NeuralNet.

Uses of IconObject in mgui.neuro.imaging.camino

Classes in mgui.neuro.imaging.camino that implement IconObject

Modifier and Type	Class	Description
class	CaminoProject

Uses of IconObject in mgui.pipelines

Classes in mgui.pipelines that implement IconObject

Modifier and Type	Class	Description
class	InterfacePipeline	Represents a series of Tasks that are to be run sequentially, such that the output of a task becomes the input of the subsequent one.
class	JavaProcess	Represents a Java process; i.e., a class containing a main method which allows it to be run as a process.
class	NativeProcess	Represents a native process; i.e., one which runs from the OS command console.
class	PipelineFork	Represents a fork in a pipeline; i.e., a branching point, where the output of the previous process becomes the input of two or more independent pipelines.
class	PipelineProcess	Represents a Java process specification, specified by an executable process (native or Java) and a set of parameters.
class	PipelineProcessInstance	Represents a specific instance of a Java process.
class	PipelineTask	A task is a launchable component of a pipeline.

Uses of IconObject in mgui.resources.icons

Classes in mgui.resources.icons that implement IconObject

Modifier and Type	Class	Description
class	NamedIcon	Specifies a named icon.