Uses of Class
mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions

Packages that use ScalpAndSkullModelOptions

Package	Description
mgui.geometry.neuro.mesh
mgui.interfaces.shapes.neuro

Uses of ScalpAndSkullModelOptions in mgui.geometry.neuro.mesh

Methods in mgui.geometry.neuro.mesh with parameters of type ScalpAndSkullModelOptions

Modifier and Type	Method	Description
static Mesh3D[]	NeuroMeshFunctions.getControlPointMeshes(int[][] A, java.util.ArrayList<SampleRay> rays, ScalpAndSkullModelOptions options)	Generates four meshes corresponding to the average control points.
static java.util.ArrayList<java.util.ArrayList<java.lang.Double>>	NeuroMeshFunctions.getRayCurves(ScalpAndSkullModelOptions options, java.lang.String subject, java.lang.String output_file)
static java.util.ArrayList<java.util.ArrayList<java.lang.Double>>	NeuroMeshFunctions.getRayCurves(ScalpAndSkullModelOptions options, java.lang.String subject, java.lang.String output_file, java.util.ArrayList<java.util.ArrayList<java.lang.Double>> unnormalized, Mesh3D hull_mesh, java.util.ArrayList<java.lang.Double> scales)
static java.util.ArrayList<java.util.ArrayList<java.lang.Double>>	NeuroMeshFunctions.getRayCurvesBak(ScalpAndSkullModelOptions options, java.lang.String subject, java.lang.String output_file, java.util.ArrayList<java.util.ArrayList<java.lang.Double>> unnormalized, Mesh3D hull_mesh)
static void	NeuroMeshFunctions.getRays(ScalpAndSkullModelOptions options, java.util.ArrayList<SampleRay> rays_1, java.util.ArrayList<SampleRay> rays_2, ProgressUpdater progress)	Generates a set of sample rays from an instance of ScalpAndSkullModelOptions, including a brain hull surface and a T1-weighted brain image.
static void	NeuroMeshFunctions.getRaysBlocking(ScalpAndSkullModelOptions options, java.util.ArrayList<SampleRay> rays_1, java.util.ArrayList<SampleRay> rays_2, ProgressUpdater progress)	Generates and fills three sets of sample rays based upon the parameters in options.
static Mesh3D[]	NeuroMeshFunctions.getSkullAndScalpMeshes(int[][] A, java.util.ArrayList<SampleRay> scalp_rays, java.util.ArrayList<SampleRay> full_rays, ScalpAndSkullModelOptions options)	Generates meshes, given the control points; array is ordered as: inner skull outer skull scalp
static Mesh3D[]	NeuroMeshFunctions.getSkullAndScalpMeshes(int[][] A, java.util.ArrayList<SampleRay> scalp_rays, java.util.ArrayList<SampleRay> full_rays, ScalpAndSkullModelOptions options, ProgressUpdater updater)	Generates meshes, given the control points; array is ordered as: inner skull outer skull scalp control_point_A1 control_point_A2 control_point_A3 control_point_A4
static Mesh3D[]	NeuroMeshFunctions.getSkullAndScalpMeshesBlocking(int[][] A, java.util.ArrayList<SampleRay> scalp_rays, java.util.ArrayList<SampleRay> full_rays, ScalpAndSkullModelOptions options, ProgressUpdater updater)	Generates meshes, given the control points; array is ordered as: inner skull outer skull scalp control_point_A1 control_point_A2 control_point_A3 control_point_A4 ..and 4 additional meshes for subject control points
static int[][]	NeuroMeshFunctions.loadAverageRays(java.lang.String average_ray_file, boolean smooth, ScalpAndSkullModelOptions options, Mesh3D mesh, java.util.ArrayList<java.lang.Double> scales)
static boolean	NeuroMeshFunctions.modelScalpAndSkull(ScalpAndSkullModelOptions options, InterfaceProgressBar progress_bar)
static boolean	NeuroMeshFunctions.modelScalpAndSkullJob(ScalpAndSkullModelOptions options, InterfaceProgressBar progress_bar)
static boolean	NeuroMeshFunctions.modelScalpAndSkullJob(ScalpAndSkullModelOptions options, InterfaceProgressBar progress_bar, java.lang.String subject)
static boolean	NeuroMeshFunctions.modelScalpAndSkullJob(ScalpAndSkullModelOptions options, InterfaceProgressBar progress_bar, java.lang.String subject, boolean set_points)
static boolean	NeuroMeshFunctions.modelSkullAndScalp2Blocking(ScalpAndSkullModelOptions options, java.lang.String average_ray_file, java.lang.String subject_dir, java.lang.String subject, java.lang.String output_prefix, int[][] A, java.util.ArrayList<java.lang.Double> scales, boolean avr_out)

Uses of ScalpAndSkullModelOptions in mgui.interfaces.shapes.neuro

Methods in mgui.interfaces.shapes.neuro with parameters of type ScalpAndSkullModelOptions

Modifier and Type	Method	Description
static void	NeuroMeshOptionsDialog.showDialog(javax.swing.JFrame frame, ScalpAndSkullModelOptions options)

Constructors in mgui.interfaces.shapes.neuro with parameters of type ScalpAndSkullModelOptions

Constructor	Description
NeuroMeshOptionsDialog(javax.swing.JFrame frame, ScalpAndSkullModelOptions options)