A-Index

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A

A - Variable in class mgui.geometry.Mesh3D.MeshFace3D
A - Variable in class mgui.geometry.Triangle3D
A - Variable in class mgui.morph.sections.MappedPolygon2D
a1 - Variable in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
a2 - Variable in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
a3 - Variable in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
above - Variable in class mgui.interfaces.shapes.mesh.MeshPlaneMaskOptions
ABSOLUTE - mgui.io.standard.xml.svg.SVGParser.Mode
AbstractAxon - Class in mgui.neuro.components: Default class for an axon.
AbstractAxon() - Constructor for class mgui.neuro.components.AbstractAxon
AbstractCompartment - Class in mgui.neuro.components.compartments: Basic compartment for compartmental model components.
AbstractCompartment() - Constructor for class mgui.neuro.components.compartments.AbstractCompartment
AbstractCorticalConnection - Class in mgui.neuro.components.cortical: Abstract class serving as a base for all cortical connections.
AbstractCorticalConnection() - Constructor for class mgui.neuro.components.cortical.AbstractCorticalConnection
AbstractCorticalInput - Class in mgui.neuro.components.cortical
AbstractCorticalInput() - Constructor for class mgui.neuro.components.cortical.AbstractCorticalInput
AbstractCorticalOutput - Class in mgui.neuro.components.cortical
AbstractCorticalOutput() - Constructor for class mgui.neuro.components.cortical.AbstractCorticalOutput
AbstractCorticalRegion - Class in mgui.neuro.components.cortical: Represents a component at the resolution of a cortical region.
AbstractCorticalRegion() - Constructor for class mgui.neuro.components.cortical.AbstractCorticalRegion
AbstractDendrite - Class in mgui.neuro.components
AbstractDendrite() - Constructor for class mgui.neuro.components.AbstractDendrite
AbstractDendrites - Class in mgui.neuro.components: Default class for dendrites.
AbstractDendrites() - Constructor for class mgui.neuro.components.AbstractDendrites
AbstractEnvironmentDataSource<T extends MguiNumber> - Class in mgui.models.environments: Serves as a data source updated by a DynamicModelEnvironment.
AbstractEnvironmentDataSource() - Constructor for class mgui.models.environments.AbstractEnvironmentDataSource
AbstractGraphEdge - Class in mgui.interfaces.graphs: Abstract representation of a graph edge, connecting two nodes.
AbstractGraphEdge(AbstractGraphNode, AbstractGraphNode) - Constructor for class mgui.interfaces.graphs.AbstractGraphEdge
AbstractGraphNode - Class in mgui.interfaces.graphs: Abstract representation of a graph node (vertex), with a specific static 3D locations.
AbstractGraphNode() - Constructor for class mgui.interfaces.graphs.AbstractGraphNode
AbstractGraphNode(String) - Constructor for class mgui.interfaces.graphs.AbstractGraphNode
AbstractInterfaceObject - Class in mgui.interfaces: Abstract class which acts as the base class for all "interface" objects; i.e., objects which provide an interface between user and the underlying model.
AbstractInterfaceObject() - Constructor for class mgui.interfaces.AbstractInterfaceObject
AbstractMotorNeuron - Class in mgui.neuro.components: Abstract class for a motor (output) neuron.
AbstractMotorNeuron() - Constructor for class mgui.neuro.components.AbstractMotorNeuron
AbstractNetwork - Class in mgui.models.networks
AbstractNetwork() - Constructor for class mgui.models.networks.AbstractNetwork
AbstractNetworkComponent - Class in mgui.models.networks.components: Abstract generic class for neuro model components to inherit.
AbstractNetworkComponent() - Constructor for class mgui.models.networks.components.AbstractNetworkComponent
AbstractNetworkGraph - Class in mgui.graphs.networks: A graph which explicitly represents a connected network.
AbstractNetworkGraph() - Constructor for class mgui.graphs.networks.AbstractNetworkGraph
AbstractNetworkGraphConnection - Class in mgui.graphs.networks: Represents an edge (i.e., a connection) in a network graph.
AbstractNetworkGraphConnection(AbstractNetworkGraphNode, AbstractNetworkGraphNode) - Constructor for class mgui.graphs.networks.AbstractNetworkGraphConnection
AbstractNetworkGraphNode - Class in mgui.graphs.networks: Represents a node in a network graph.
AbstractNetworkGraphNode() - Constructor for class mgui.graphs.networks.AbstractNetworkGraphNode
AbstractNetworkModel - Class in mgui.models.networks: Abstract class for all neuronal models to inherit.
AbstractNetworkModel() - Constructor for class mgui.models.networks.AbstractNetworkModel
AbstractNeuralNet - Class in mgui.neuro.networks: Abstract class for all neural net classes to inherit.
AbstractNeuralNet() - Constructor for class mgui.neuro.networks.AbstractNeuralNet
AbstractNeuroComponent - Class in mgui.neuro.components: Abstract generic class for neuro model components to inherit.
AbstractNeuroComponent() - Constructor for class mgui.neuro.components.AbstractNeuroComponent
AbstractNeuron - Class in mgui.neuro.components
AbstractNeuron() - Constructor for class mgui.neuro.components.AbstractNeuron
AbstractNeuronalComponent - Class in mgui.neuro.components: Abstract class for all neuronal components (i.e., components of instances of Neuron) to inherit.
AbstractNeuronalComponent() - Constructor for class mgui.neuro.components.AbstractNeuronalComponent
AbstractProgressUpdater - Class in mgui.interfaces.gui: An abstract updater with default implementations for all methods
AbstractProgressUpdater() - Constructor for class mgui.interfaces.gui.AbstractProgressUpdater
AbstractSensoryNeuron - Class in mgui.neuro.components
AbstractSensoryNeuron() - Constructor for class mgui.neuro.components.AbstractSensoryNeuron
AbstractSoma - Class in mgui.neuro.components
AbstractSoma() - Constructor for class mgui.neuro.components.AbstractSoma
AbstractSynapse - Class in mgui.neuro.components
AbstractSynapse() - Constructor for class mgui.neuro.components.AbstractSynapse
AbstractTreeCellEditor - Class in mgui.interfaces.trees
AbstractTreeCellEditor() - Constructor for class mgui.interfaces.trees.AbstractTreeCellEditor
AbstractTreeTableModel - Class in mgui.interfaces.trees: An abstract implementation of the TreeTableModel interface, handling the list of listeners.
AbstractTreeTableModel(Object) - Constructor for class mgui.interfaces.trees.AbstractTreeTableModel
accept(File) - Method in class mgui.interfaces.shapes.util.ImageFilter
accept(File) - Method in class mgui.io.standard.xml.svg.SVGFileFilter
accept(File) - Method in class mgui.io.util.WildcardFileFilter
action(Event, Object) - Method in class au.edu.unsw.cse.Applet3d
action(Event, Object) - Method in class au.edu.unsw.cse.AppletHull
action(Event, Object) - Method in class au.edu.unsw.cse.ColorControl
action(Event, Object) - Method in class au.edu.unsw.cse.Viewer
actionListeners - Variable in class mgui.interfaces.maps.ContinuousColourBar
actionPerformed(ActionEvent) - Method in class mgui.interfaces.attributes.AttributeDialogBox
actionPerformed(ActionEvent) - Method in class mgui.interfaces.attributes.InterfaceAttributePanel
actionPerformed(ActionEvent) - Method in class mgui.interfaces.attributes.table.AttributeCellEditor
actionPerformed(ActionEvent) - Method in class mgui.interfaces.attributes.tree.AttributeTreeCellEditor
actionPerformed(ActionEvent) - Method in class mgui.interfaces.attributes.video.AttributeObjectVideoTaskDialogPanel
actionPerformed(ActionEvent) - Method in class mgui.interfaces.cocomac.InterfaceCoCoMacPanel
actionPerformed(ActionEvent) - Method in class mgui.interfaces.datasources.DataSourceDialogBox
actionPerformed(ActionEvent) - Method in class mgui.interfaces.datasources.DataSourceDriverDialogBox
actionPerformed(ActionEvent) - Method in class mgui.interfaces.datasources.EditDataFieldDialogBox
actionPerformed(ActionEvent) - Method in class mgui.interfaces.datasources.EditDataTableDialog
actionPerformed(ActionEvent) - Method in class mgui.interfaces.datasources.EditQueryDialogBox
actionPerformed(ActionEvent) - Method in class mgui.interfaces.datasources.InterfaceDatasourcePanel
actionPerformed(ActionEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
actionPerformed(ActionEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphicPanel
actionPerformed(ActionEvent) - Method in class mgui.interfaces.graphics.video.RotateView3DTaskDialogPanel
actionPerformed(ActionEvent) - Method in class mgui.interfaces.graphics.video.SetView3DTaskDialogPanel
actionPerformed(ActionEvent) - Method in class mgui.interfaces.graphics.video.VideoTaskDialog
actionPerformed(ActionEvent) - Method in class mgui.interfaces.gui.ColourBarOutDialog
actionPerformed(ActionEvent) - Method in class mgui.interfaces.gui.InterfaceProgressBar
actionPerformed(ActionEvent) - Method in class mgui.interfaces.gui.LineStyleDialog
actionPerformed(ActionEvent) - Method in class mgui.interfaces.gui.MatrixEditorDialog
actionPerformed(ActionEvent) - Method in class mgui.interfaces.InterfaceButtonPanel
actionPerformed(ActionEvent) - Method in class mgui.interfaces.InterfaceDialogBox
actionPerformed(ActionEvent) - Method in class mgui.interfaces.InterfaceDisplayPanel
actionPerformed(ActionEvent) - Method in class mgui.interfaces.InterfaceSelectionPanel
actionPerformed(ActionEvent) - Method in class mgui.interfaces.io.InterfaceFilePanel
actionPerformed(ActionEvent) - Method in class mgui.interfaces.io.VolumeFileWriteDialog: Deprecated.
actionPerformed(ActionEvent) - Method in class mgui.interfaces.layouts.CategoryLayout
actionPerformed(ActionEvent) - Method in class mgui.interfaces.maps.DiscreteColourMapTable.Editor
actionPerformed(ActionEvent) - Method in class mgui.interfaces.maps.InterfaceMapPanel
actionPerformed(ActionEvent) - Method in class mgui.interfaces.math.MathExpressionDialogBox
actionPerformed(ActionEvent) - Method in class mgui.interfaces.menus.InterfaceMenu
actionPerformed(ActionEvent) - Method in class mgui.interfaces.menus.InterfacePopupMenu
actionPerformed(ActionEvent) - Method in class mgui.interfaces.models.InterfaceDynamicModelPanel
actionPerformed(ActionEvent) - Method in class mgui.interfaces.neuro.CorticalThicknessDataTableDialogBox
actionPerformed(ActionEvent) - Method in class mgui.interfaces.neuro.CorticalThicknessDialogBox
actionPerformed(ActionEvent) - Method in class mgui.interfaces.neuro.imaging.camino.CaminoProcessDialogBox
actionPerformed(ActionEvent) - Method in class mgui.interfaces.neuro.imaging.camino.CaminoProjectDialogBox
actionPerformed(ActionEvent) - Method in class mgui.interfaces.neuro.imaging.camino.CaminoTaskDialogBox
actionPerformed(ActionEvent) - Method in class mgui.interfaces.neuro.imaging.camino.InterfaceCaminoPanel
actionPerformed(ActionEvent) - Method in class mgui.interfaces.neuro.InterfaceCorticalThicknessPanel
actionPerformed(ActionEvent) - Method in class mgui.interfaces.pipelines.InterfacePipelinesPanel
actionPerformed(ActionEvent) - Method in class mgui.interfaces.pipelines.PipelineProcessDialogBox
actionPerformed(ActionEvent) - Method in class mgui.interfaces.pipelines.PipelineProcessInstanceDialogBox
actionPerformed(ActionEvent) - Method in class mgui.interfaces.plots.InterfacePlotPanel
actionPerformed(ActionEvent) - Method in class mgui.interfaces.plots.NewPlotDialog
actionPerformed(ActionEvent) - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog
actionPerformed(ActionEvent) - Method in class mgui.interfaces.plots.sgt.SgtScatterPlotDialog
actionPerformed(ActionEvent) - Method in class mgui.interfaces.projects.InterfaceProjectDialogBox
actionPerformed(ActionEvent) - Method in class mgui.interfaces.projects.InterfaceProjectPanel
actionPerformed(ActionEvent) - Method in class mgui.interfaces.projects.ProjectDirectoryDialogBox
actionPerformed(ActionEvent) - Method in class mgui.interfaces.projects.util.ConsolidateDirectoriesDialogBox
actionPerformed(ActionEvent) - Method in class mgui.interfaces.queries.InterfaceQueryPanel
actionPerformed(ActionEvent) - Method in class mgui.interfaces.shapes.datasources.DataSourceLinkDialogBox
actionPerformed(ActionEvent) - Method in class mgui.interfaces.shapes.InterfacePolygonPanel
actionPerformed(ActionEvent) - Method in class mgui.interfaces.shapes.InterfaceSectionSetPanel
actionPerformed(ActionEvent) - Method in class mgui.interfaces.shapes.InterfaceShapesPanel
actionPerformed(ActionEvent) - Method in class mgui.interfaces.shapes.mesh.InterfaceMeshPanel
actionPerformed(ActionEvent) - Method in class mgui.interfaces.shapes.mesh.MeshDataMaskOptionsDialog
actionPerformed(ActionEvent) - Method in class mgui.interfaces.shapes.mesh.MeshDataThresholdOptionsDialog
actionPerformed(ActionEvent) - Method in class mgui.interfaces.shapes.mesh.MeshPlaneMaskOptionsDialog
actionPerformed(ActionEvent) - Method in class mgui.interfaces.shapes.neuro.InterfaceNeuroMeshPanel
actionPerformed(ActionEvent) - Method in class mgui.interfaces.shapes.neuro.InterfaceNeuroMeshPanel2
actionPerformed(ActionEvent) - Method in class mgui.interfaces.shapes.neuro.NeuroMeshOptionsDialog
actionPerformed(ActionEvent) - Method in class mgui.interfaces.shapes.ShapeStatsPanel
actionPerformed(ActionEvent) - Method in class mgui.interfaces.shapes.util.Plane3DDialog
actionPerformed(ActionEvent) - Method in class mgui.interfaces.shapes.video.ChangeSectionVideoTaskDialogPanel
actionPerformed(ActionEvent) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
actionPerformed(ActionEvent) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel: ActionListener method
actionPerformed(ActionEvent) - Method in class mgui.interfaces.shapes.volume.VolumeMaskDialog_old
actionPerformed(ActionEvent) - Method in class mgui.interfaces.startup.InitFrame
actionPerformed(ActionEvent) - Method in class mgui.interfaces.tools.dialogs.DialogToolDialogBox
actionPerformed(ActionEvent) - Method in class mgui.interfaces.tools.InterfaceTool2DPanel: Deprecated.
actionPerformed(ActionEvent) - Method in class mgui.interfaces.tools.InterfaceToolPanel
actionPerformed(ActionEvent) - Method in class mgui.interfaces.tools.shapes.ToolCreateMeshFromPolylinesDialog
actionPerformed(ActionEvent) - Method in class mgui.interfaces.tools.shapes.ToolCutMeshWithPlaneDialog
actionPerformed(ActionEvent) - Method in class mgui.interfaces.tools.shapes.ToolGetConvexHull2DDialog
actionPerformed(ActionEvent) - Method in class mgui.interfaces.tools.shapes.ToolGetMeshIntersectionPolylinesDialog
actionPerformed(ActionEvent) - Method in class mgui.io.domestic.datasources.ExportDataTableDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.domestic.datasources.ImportDataTableDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.domestic.maps.DiscreteColourMapInDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.domestic.maps.DiscreteColourMapOutDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.domestic.maps.NameMapOutDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.domestic.network.CorticalNetworkMatrixInDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.domestic.shapes.MeshOptionsDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.domestic.shapes.PointSet2DInputDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.domestic.shapes.PointSet3DDataInputDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.domestic.shapes.PointSet3DInputDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.domestic.shapes.PolygonSet3DInputDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.domestic.shapes.ShapeDataInputDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.domestic.shapes.ShapeInputDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.domestic.shapes.ShapeModel3DInputDialog
actionPerformed(ActionEvent) - Method in class mgui.io.domestic.shapes.ShapeModel3DOutputDialog
actionPerformed(ActionEvent) - Method in class mgui.io.domestic.shapes.ShapeOutputDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.domestic.shapes.SurfaceDataInputDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.domestic.shapes.SurfaceDataOutputDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.domestic.shapes.SurfaceInputDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.domestic.shapes.SurfaceOutputDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.domestic.shapes.VectorSet3DInputDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.domestic.shapes.VolumeInputDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.domestic.shapes.VolumeOutputDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.domestic.variables.MatrixInDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.domestic.videos.ImageStackVideoDialog
actionPerformed(ActionEvent) - Method in class mgui.io.domestic.views.View3DOutputDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.foreign.caret.CaretAreaColourInDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.foreign.caret.CaretAreaColourOutDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.foreign.caret.CaretMetricInDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.foreign.caret.CaretMetricOptionsDialog
actionPerformed(ActionEvent) - Method in class mgui.io.foreign.caret.CaretPaintInDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.foreign.caret.CaretPaintOptionsDialog: Deprecated.
actionPerformed(ActionEvent) - Method in class mgui.io.foreign.caret.CaretSurfaceOutDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.foreign.freesurfer.FreesurferVertexDataDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.foreign.pajek.PajekGraphInputDialog
actionPerformed(ActionEvent) - Method in class mgui.io.standard.gifti.GiftiSurfaceInDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.standard.gifti.GiftiSurfaceOutDialogBox
actionPerformed(ActionEvent) - Method in class mgui.io.standard.xml.svg.SVGOptionsDialog
actionPerformed(ActionEvent) - Method in class mgui.morph.sections.InterfaceMorphPanel
actionPerformed(ActionEvent) - Method in class mgui.morph.sections.InterfaceMorphPanel2
actionPerformed(ActionEvent) - Method in class mgui.morph.sections.InterfaceRadialRep
actionPerformed(ActionEvent) - Method in class mgui.morph.sections.InterfaceRadialRep2
activate() - Method in class mgui.interfaces.tools.dialogs.DialogTool
activate() - Method in class mgui.interfaces.tools.graphics.Tool2D
activate() - Method in class mgui.interfaces.tools.graphics.Tool3D
activate() - Method in class mgui.interfaces.tools.graphs.ToolGraphImage
activate() - Method in class mgui.interfaces.tools.graphs.ToolGraphTransform
activate() - Method in class mgui.interfaces.tools.shapes.ToolRuler2D
activate() - Method in interface mgui.interfaces.tools.Tool: Should be called once a tool is activated within a particular InterfaceDisplayPanel.
activate(boolean) - Method in class mgui.interfaces.tools.dialogs.DialogTool: Activate the tool by showing its dialog box.
activateClip(ModelClip) - Method in class mgui.interfaces.shapes.ShapeSet3DInt: Adds this model to the scopes of the current clip nodes
add(double) - Method in class mgui.numbers.MguiBoolean
add(double) - Method in class mgui.numbers.MguiDouble
add(double) - Method in class mgui.numbers.MguiFloat
add(double) - Method in class mgui.numbers.MguiInteger
add(double) - Method in class mgui.numbers.MguiLong
add(double) - Method in interface mgui.numbers.MguiNumber: Update the value of this number by adding n.
add(double) - Method in class mgui.numbers.MguiShort
add(int, String) - Method in class mgui.interfaces.maps.NameMap
add(Point3d) - Method in class au.edu.unsw.cse.Point3d
add(Point3dObject3d) - Method in class au.edu.unsw.cse.Edge3dPlus: try to add a point to association list.
add(Point3dObject3d) - Method in class au.edu.unsw.cse.Triangle3dPlus: try to add a point to association list.
add(Quaternion) - Method in class au.edu.unsw.cse.Quaternion
add(String, Object) - Method in class mgui.util.OptionList
add(String, Attribute<?>) - Method in class mgui.interfaces.attributes.AttributeList: Adds an attribute to the specified category.
add(Attribute<?>) - Method in class mgui.interfaces.attributes.AttributeList: Adds an attribute to the default list
add(MguiNumber) - Method in class mgui.numbers.MguiBoolean
add(MguiNumber) - Method in class mgui.numbers.MguiDouble
add(MguiNumber) - Method in class mgui.numbers.MguiFloat
add(MguiNumber) - Method in class mgui.numbers.MguiInteger
add(MguiNumber) - Method in class mgui.numbers.MguiLong
add(MguiNumber) - Method in interface mgui.numbers.MguiNumber: Update the value of this number by adding n.
add(MguiNumber) - Method in class mgui.numbers.MguiShort
Add - mgui.geometry.volume.VolumeFunctions.Operation
add_ids - Variable in class mgui.interfaces.graphs.util.GraphFunctions.EdgeFactory
add_ids - Variable in class mgui.interfaces.graphs.util.GraphFunctions.NodeFactory
add_uid - Variable in class mgui.io.domestic.datasources.ImportDataTableOptions
addActionListener(ActionListener) - Method in class mgui.interfaces.maps.ContinuousColourBar
addActionListener(ActionListener) - Method in class mgui.io.standard.xml.svg.SVGOptionsDialog
addAll(NameMap) - Method in class mgui.interfaces.maps.NameMap
addAllConnections - Variable in class mgui.io.domestic.network.CorticalNetworkMatrixInOptions
addAnchor(double, Colour) - Method in class mgui.interfaces.maps.ContinuousColourMap
addAnchor(MguiNumber, Colour) - Method in class mgui.interfaces.maps.ContinuousColourMap
addAppear(Object3d) - Method in class au.edu.unsw.cse.VRMLState
addAttribute(SGTData, Attribute) - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout: Set attributes for the given data object.
addAttributeListener(AttributeListener) - Method in class mgui.interfaces.attributes.Attribute
addAttributeListener(AttributeListener) - Method in class mgui.interfaces.attributes.AttributeList
addAxis(String, A, SgtPlotFunctions.AxisType) - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout: Adds an axis to this plot.
addAxis(String, PlainAxis, SgtPlotFunctions.AxisType) - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout
addButton(String, InterfaceButton) - Method in class mgui.interfaces.tools.InterfaceTool2DPanel: Deprecated.
addButton(InterfaceButton) - Method in class mgui.interfaces.InterfaceButtonPanel
addCategory(String) - Method in class mgui.interfaces.attributes.AttributeList
addCategory(String) - Method in class mgui.interfaces.tools.InterfaceTool2DPanel: Deprecated.
addCellEditorListener(CellEditorListener) - Method in class mgui.interfaces.trees.AbstractTreeCellEditor
addChangeListener(ChangeListener) - Method in class mgui.interfaces.stats.HistogramPlot: Add a ChangeListener to this plot panel
addChannel(int, String) - Method in class mgui.interfaces.io.DataBridgeNamedXY
addChannel(int, String) - Method in interface mgui.interfaces.io.DataOutputStreamNamedXY: Adds a Y channel named channel.
addChild(InterfaceTreeNode) - Method in class mgui.interfaces.trees.InterfaceTreeNode: Adds a child to an InterfaceTreeNode and sets its listeners.
addColor(Color) - Method in class au.edu.unsw.cse.Viewer: Add a color that the user cannot make invisible
addColor(String, String, boolean, Color, boolean) - Method in class au.edu.unsw.cse.Viewer: Add a checkbox allowing user to set objects of this colour to be invisible
addColourMap(File) - Static method in class mgui.interfaces.InterfaceEnvironment: Load new colour map into the environment from the specified file.
addColourMap(ColourMap) - Method in class mgui.interfaces.InterfaceDisplayPanel
addColourMap(ColourMap) - Static method in class mgui.interfaces.InterfaceEnvironment: Add new colour map to the environment.
addComponent(DynamicModelComponent) - Method in class mgui.models.dynamic.DynamicModelEngine: Add c to this engine.
addConnection(DynamicModelComponent) - Method in interface mgui.models.dynamic.DynamicModelComponent
addConnection(DynamicModelComponent) - Method in class mgui.neuro.components.AbstractNeuroComponent
addControlNode(int, double) - Method in class mgui.morph.sections.ConstrainedRadialRepresentation: Sets a control node, such that the node is assigned the given angle, and any nodes between this point and the next control point clockwise are adjusted so that their radii fit between them, but maintain their proportionality.
addData(T) - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout: Add a data object to this plot, and if autoranges are set, update ranges accordingly.
addDataField(DataTable, DataField) - Method in class mgui.datasources.DataSource: Attempts to adds a field to the specified table in this data source.
addDataItem(ProjectDataItem) - Method in class mgui.interfaces.projects.ProjectDirectory
addDataLink(String, String, LinkedDataStream<?>) - Method in class mgui.interfaces.shapes.InterfaceShape
addDataLink(String, LinkedDataStream<?>) - Method in class mgui.interfaces.shapes.VertexDataColumn: Adds a data link to this column.
addDataLink(String, LinkedDataStream<?>, boolean) - Method in class mgui.interfaces.shapes.VertexDataColumn: Adds a data link to this column.
addDataQuery(DataQuery) - Method in class mgui.datasources.DataSource: Adds an SQL query to this data source.
addDataSeries(SgtLine) - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlot: Adds a line series to this plot, with the given label.
addDataSeries(SgtPointSet) - Method in class mgui.interfaces.plots.sgt.SgtScatterplot: Adds a point set to this plot, with the given label.
addDataSource(DataSource) - Method in class mgui.interfaces.InterfaceWorkspace
addDataSourceDriver(String) - Static method in class mgui.interfaces.InterfaceEnvironment: Looks for format:
addDataSourceDriver(DataSourceDriver) - Static method in class mgui.interfaces.InterfaceEnvironment: Add the JDBC driver driver to the environment.
addDataSourceDriver(DataSourceDriver, Class<? extends DataSourceDialogPanel>) - Static method in class mgui.interfaces.InterfaceEnvironment: Add the JDBC driver driver to the environment.
addDataSourceListener(DataSourceListener) - Method in interface mgui.interfaces.io.InterfaceDataSource
addDataSourceListener(DataSourceListener) - Method in class mgui.interfaces.plots.MatrixPlotDataSource
addDataSourceListener(DataSourceListener) - Method in class mgui.interfaces.plots.PlotXYDataSource
addDataSourceListener(DataSourceListener) - Method in class mgui.io.domestic.shapes.VolumeFileDataSource
addDataSourceListener(DataSourceListener) - Method in class mgui.models.environments.AbstractEnvironmentDataSource
addDataTable() - Method in class mgui.interfaces.neuro.InterfaceCorticalThicknessPanel
addDataTable(DataTable) - Method in class mgui.datasources.DataSource: Attempt to add a table to data source.
addDendrite(Dendrite) - Method in class mgui.neuro.components.AbstractDendrites
addDendrite(Dendrite) - Method in interface mgui.neuro.components.Dendrites
addDendrite(Dendrite) - Method in class mgui.neuro.components.simple.SimpleDendrites
addDendrite(Dendrite, Dendrite) - Method in class mgui.neuro.components.AbstractDendrites
addDendrite(Dendrite, Dendrite) - Method in interface mgui.neuro.components.Dendrites
addDendrites(Dendrite, Dendrite) - Method in class mgui.neuro.components.simple.SimpleDendrites
addDisappear(Object3d) - Method in class au.edu.unsw.cse.VRMLState
addDisplayListener(DisplayListener) - Method in class mgui.interfaces.graphics.Graphic2DGrid
addDisplayListener(DisplayListener) - Method in class mgui.interfaces.InterfacePanel
addDisplayPanelListener(DisplayPanelListener) - Method in class mgui.interfaces.InterfaceDisplayPanel
addDynamicListener(DynamicPipelineListener) - Method in class mgui.pipelines.InterfacePipeline
addDynamicListener(DynamicPipelineListener) - Method in class mgui.pipelines.PipelineLauncher
addDynamicModel(InterfaceAbstractModel) - Method in class mgui.interfaces.InterfaceWorkspace
addEdge(MeshEdge) - Method in class mgui.geometry.mesh.MeshEdgeSet
addEdge(MeshEdge) - Method in class mgui.geometry.mesh.MeshTriangle
addEdge(AbstractGraphEdge, EdgeType) - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
addEdge(AbstractGraphEdge, AbstractGraphNode, AbstractGraphNode, EdgeType) - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph: Overridden to set up edge properly.
addEdge(AbstractGraphNode, AbstractGraphNode, EdgeType) - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
addEdge(Point2f[]) - Method in class mgui.interfaces.shapes.Mesh2DInt
addEditor(Class, TreeCellEditor) - Method in class mgui.interfaces.trees.InterfaceTreeCellEditor
addElement(Object3d) - Method in class au.edu.unsw.cse.Object3dList
addEvent(DynamicModelEvent) - Method in interface mgui.models.dynamic.DynamicModelComponent
addEvent(DynamicModelEvent) - Method in class mgui.neuro.components.AbstractNeuroComponent
addExtension(int, String) - Method in class mgui.io.standard.nifti.Nifti1Dataset: Add an extension stored in a file to a header
addExtension(String) - Method in class mgui.interfaces.io.InterfaceIOType
addFace(int, int, int) - Method in class mgui.geometry.Mesh3D: Add a triangular face to this mesh.
addFace(Mesh3D.MeshFace3D) - Method in class mgui.geometry.Mesh3D: Adds a face to this mesh.
addFaces(ArrayList<Mesh3D.MeshFace3D>) - Method in class mgui.geometry.Mesh3D
addField(DataField) - Method in class mgui.datasources.DataTable: Adds a new field to this table.
addGraph(String, CartesianGraph) - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout
addGraph(InterfaceAbstractGraph) - Method in class mgui.interfaces.InterfaceWorkspace
addGraph(T) - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout
addGraph(T) - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout: Creates a graph for object and adds it to its own layer.
addGraphEdge(AbstractGraphEdge) - Method in class mgui.graphs.networks.AbstractNetworkGraph
addGraphEdge(AbstractGraphEdge) - Method in class mgui.interfaces.graphs.DefaultGraph: Adds an edge to this graph.
addGraphEdge(AbstractGraphEdge, EdgeType) - Method in class mgui.interfaces.graphs.DefaultGraph: Adds an edge to this graph.
addGraphicListener(InterfaceGraphicListener) - Method in class mgui.interfaces.graphics.InterfaceGraphic
addGraphicListener(InterfaceGraphicListener) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
addGraphicMouseListener(GraphicMouseListener) - Method in class mgui.interfaces.InterfaceDisplayPanel
addGraphicMouseListener(GraphicMouseListener) - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
addGraphics3D(InterfaceGraphic3D) - Method in class mgui.interfaces.shapes.ShapeModel3D
addGraphListener(InterfaceGraphListener) - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
addGraphNode(AbstractGraphNode) - Method in class mgui.graphs.networks.AbstractNetworkGraph
addGraphNode(AbstractGraphNode) - Method in class mgui.interfaces.graphs.DefaultGraph: Adds a node to this graph.
addGrid(Graphic2DGrid) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
addIndex(String, DataIndex<?>) - Method in class mgui.datasources.DataTable
addIndexedTriangleArray(Mesh3D, IndexedTriangleArray) - Static method in class mgui.geometry.mesh.MeshFunctions: Adds an IndexedTriangleArray to the current mesh.
addInput(String) - Method in class mgui.neuro.networks.CorticalNetwork
addInput(AbstractCorticalRegion) - Method in class mgui.neuro.networks.CorticalNetwork
addInputStream(DataInputStream<?>) - Method in class mgui.interfaces.InterfaceWorkspace
addInputStream(DataInputStream<T>) - Method in class mgui.interfaces.plots.InterfacePlot
addInputStreamListener(DataInputStreamListener<T>) - Method in class mgui.interfaces.io.DataBridge
addInputStreamListener(DataInputStreamListener<T>) - Method in interface mgui.interfaces.io.DataInputStream
addInstruction(Instruction) - Method in class mgui.io.standard.xml.svg.SVGPath
addInterfaceGraphicClass(String, String) - Static method in class mgui.interfaces.InterfaceEnvironment
addInterfacePanelClass(String, String) - Static method in class mgui.interfaces.InterfaceEnvironment
addInterfacePlotClass(String, String) - Static method in class mgui.interfaces.InterfaceEnvironment
addItem(int, Object) - Method in class mgui.interfaces.maps.ValueMap
addItem(ValueMapItem) - Method in class mgui.interfaces.maps.ValueMap
addLayer(String, Layer) - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout: Adds a layer with the specified name to this layout.
addLayoutComponent(Component, Object) - Method in class mgui.interfaces.layouts.CategoryLayout
addLayoutComponent(Component, Object) - Method in class mgui.interfaces.layouts.LineLayout
addLayoutComponent(String, Component) - Method in class au.edu.unsw.cse.StackLayout
addLayoutComponent(String, Component) - Method in class mgui.interfaces.layouts.LineLayout
addLightSource(DirectionalLight) - Method in class mgui.interfaces.maps.Camera3D: Add a directional light which moves with this camera's line of sight, with zero offset
addLightSource(DirectionalLight) - Method in class mgui.interfaces.maps.Map3D
addLightSource(DirectionalLight, Vector2d) - Method in class mgui.interfaces.maps.Camera3D: Add a directional light which moves with this camera's line of sight, offset by a specific vector.
addLightSource(DirectionalLight, Vector2d) - Method in class mgui.interfaces.maps.Map3D
addListener(NetworkGraphListener) - Method in class mgui.graphs.networks.AbstractNetworkGraphConnection
addListener(NetworkGraphListener) - Method in class mgui.graphs.networks.AbstractNetworkGraphNode
addListener(DataSourceListener) - Method in class mgui.datasources.DataSource
addListener(AxesListener) - Method in class mgui.interfaces.graphics.util.Axes3D
addListener(VideoListener) - Method in class mgui.interfaces.graphics.video.Video
addListener(Camera3DListener) - Method in class mgui.interfaces.maps.Camera3D
addListener(QueryListener) - Method in class mgui.interfaces.queries.InterfaceQuery: Adds a query listener to this query.
addListener(VertexDataColumnListener) - Method in class mgui.interfaces.shapes.VertexDataColumn
addListener(ToolInputListener) - Method in class mgui.interfaces.tools.ToolBehavior3DAdapter
addListener(ToolInputListener) - Method in class mgui.interfaces.tools.ToolInputAdapter
addListener(ToolListener) - Method in class mgui.interfaces.tools.dialogs.DialogTool
addListener(ToolListener) - Method in class mgui.interfaces.tools.graphics.Tool2D
addListener(ToolListener) - Method in class mgui.interfaces.tools.graphics.Tool3D
addListener(ToolListener) - Method in class mgui.interfaces.tools.graphs.ToolGraph
addListener(ToolListener) - Method in interface mgui.interfaces.tools.Tool
addListener(TreeListener) - Method in class mgui.interfaces.trees.InterfaceTreeNode
addListener(VariableListener) - Method in class mgui.interfaces.variables.VariableInt
addListener(DynamicModelEnvironmentListener) - Method in interface mgui.models.dynamic.DynamicModelEnvironment
addListener(DynamicModelEnvironmentListener) - Method in class mgui.models.environments.SimpleEnvironment
addListener(DynamicModelListener) - Method in interface mgui.models.dynamic.DynamicModel
addListener(DynamicModelListener) - Method in class mgui.models.networks.AbstractNetworkModel
addListener(InterfaceNetworkComponentListener) - Method in class mgui.neuro.components.AbstractNeuroComponent
addListener(NetworkListener) - Method in class mgui.models.networks.AbstractNetwork
addListener(PipelineTaskListener) - Method in class mgui.pipelines.PipelineTask
addListeners(ArrayList<GraphicMouseListener>) - Method in class mgui.interfaces.InterfaceStatusBarPanel
addListSelectionListener(ListSelectionListener) - Method in class mgui.interfaces.datasources.DataSourceDialogPanel
addListSelectionListener(ListSelectionListener) - Method in class mgui.interfaces.datasources.DataSourceListDialogPanel
addMap(MappedPolygon2D) - Method in class mgui.morph.sections.MappedPolygon2DPath
addMapListener(MapListener) - Method in class mgui.interfaces.maps.Map
addMaps(ArrayList<MappedPolygon2D>) - Method in class mgui.morph.sections.MappedPolygon2DPath
addMask(String, boolean[][][]) - Method in class mgui.interfaces.shapes.Volume3DInt: Adds a boolean mask to this volume.
addMask(String, boolean[][][], boolean) - Method in class mgui.interfaces.shapes.Volume3DInt: Adds a boolean mask to this volume.
addMenuItem(JMenuItem) - Method in class mgui.interfaces.menus.InterfaceMenu
addMenuItem(JMenuItem) - Method in class mgui.interfaces.menus.InterfacePopupMenu
addMenuItem(JMenuItem, JMenu) - Method in class mgui.interfaces.menus.InterfaceMenu
addMenuItem(JMenuItem, JMenu) - Method in class mgui.interfaces.menus.InterfacePopupMenu
addModel(InterfaceAbstractModel) - Method in class mgui.interfaces.InterfaceWorkspace
addModelListener(ShapeModel3DListener) - Method in class mgui.interfaces.shapes.ShapeModel3D
addModelShape2D(Shape2DInt, boolean) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
addModelShape2D(Shape2DInt, boolean, boolean) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
addMouseListener(MouseListener) - Method in class mgui.interfaces.graphics.InterfaceCanvas3D
addMouseListener(MouseListener) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
addMouseListener(MouseListener) - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
addMouseListener(GraphicMouseListener) - Method in class mgui.interfaces.tables.InterfaceDataTable
addMouseListener(InterfaceMouseListener) - Method in class mgui.interfaces.graphics.InterfaceGraphic
addMouseListener(InterfaceMouseListener) - Method in interface mgui.interfaces.InterfaceMouseObject
addMouseMotionListener(MouseMotionListener) - Method in class mgui.interfaces.graphics.InterfaceCanvas3D
addMouseMotionListener(MouseMotionListener) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
addMouseRelayListener(MouseRelayListener) - Method in class mgui.interfaces.plots.InterfacePlot
addMouseRelayListener(MouseRelayListener) - Method in class mgui.interfaces.plots.sgt.InterfacePlotSgt
addMouseWheelListener(MouseWheelListener) - Method in class mgui.interfaces.graphics.InterfaceCanvas3D
addMouseWheelListener(MouseWheelListener) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
addNameMap(File) - Static method in class mgui.interfaces.InterfaceEnvironment: Loads and adds a new name map to the environment.
addNameMap(NameMap) - Static method in class mgui.interfaces.InterfaceEnvironment: Adds a new name map to the environment.
addNeighbour(int) - Method in class mgui.geometry.mesh.Neighbourhood
addNew() - Method in class mgui.datasources.DataRecordSet: Initiate the addition of a new record to this record set.
addNewRecord() - Method in class mgui.interfaces.datasources.DataTableModel: Adds a new record to the model and allows the user to enter input into it.
addNode(int) - Method in class mgui.geometry.mesh.MeshEdge
addNode(String, Object) - Method in class mgui.interfaces.datasources.DataFieldTreeNode
addNode(List<K3DBinaryTree.Vertex>, int) - Method in class mgui.geometry.util.K3DBinaryTree: Adds nodes recursively until the entire set is assigned.
addNode(AttributeNode2D) - Method in class mgui.morph.sections.NodeMap2D
addNode(Point2f) - Method in class mgui.geometry.PointSet2D
addNode(Point3f) - Method in class mgui.geometry.Polygon3D
addNotify() - Method in class mgui.interfaces.gui.RowNumberTable
addNumber(int) - Method in class mgui.io.standard.xml.svg.Instruction
addOutputStream(DataOutputStream<?>) - Method in class mgui.interfaces.InterfaceWorkspace
addPanel(String, InterfaceGraphicWindow, String) - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
addPanel(JComponent, String) - Method in class mgui.interfaces.frames.SessionFrame
addPanel(InterfacePanel) - Method in class mgui.interfaces.InterfaceComboPanel
addParameter(TaskParameter) - Method in class mgui.pipelines.PipelineProcess
addPipeline(InterfacePipeline) - Method in class mgui.interfaces.InterfaceWorkspace: Adds a pipeline to this workspace.
addPipeline(InterfacePipeline) - Method in class mgui.neuro.imaging.camino.CaminoProject
addPipelineProcessLibrary(PipelineProcessLibrary) - Static method in class mgui.interfaces.InterfaceEnvironment: Adds pipeline process library to this environment.
addPlot(InterfacePlot<?>) - Method in class mgui.interfaces.InterfaceWorkspace
addPlot(InterfacePlot<?>) - Method in class mgui.interfaces.plots.InterfacePlotMulti
addPlot(Drawable) - Method in class mgui.interfaces.plots.osp.InterfacePlotOsp
addPlot(Drawable) - Method in class mgui.interfaces.plots.osp.InterfaceStripChart
addPostRenderShape(Shape2DInt) - Method in class mgui.interfaces.graphics.InterfaceCanvas3D
addPostRenderShape(Shape2DInt) - Method in class mgui.interfaces.graphics.PostRenderingCanvas3D
addProcess(PipelineProcess) - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
addProject(InterfaceProject) - Method in class mgui.interfaces.InterfaceWorkspace
addProject(CaminoProject) - Method in class mgui.interfaces.neuro.imaging.camino.InterfaceCaminoPanel
addPropertyChangeListener(PropertyChangeListener) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
addPropertyChangeListener(PropertyChangeListener) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
addPropertyChangeObject(GraphicPropertyListener) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
addPropertyChangeObject(GraphicPropertyListener) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
addPulse(int, double, double, double) - Method in class mgui.models.updaters.PulseTrainUpdater
addPulse(int, double, double, double) - Method in class mgui.neuro.updaters.PulseTrainUpdater
addQuery(InterfaceQuery) - Method in class mgui.interfaces.InterfaceWorkspace
addQueryVertex(QueryShapeVertex) - Method in class mgui.interfaces.shapes.queries.InterfaceShapeQuery
addRadius(Radius2D) - Method in class mgui.morph.sections.RadialRep2D
addRegion(AbstractCorticalRegion) - Method in class mgui.neuro.networks.CorticalNetwork
addRegion(AbstractCorticalRegion, boolean) - Method in class mgui.neuro.networks.CorticalNetwork
addRegions(ArrayList<T>, boolean) - Method in class mgui.neuro.networks.CorticalNetwork
addRenderer(Class, TreeCellRenderer) - Method in class mgui.interfaces.trees.InterfaceTreeCellRenderer
addResult(QueryResult) - Method in class mgui.interfaces.queries.InterfaceQuery: Adds a result to this query; if a result from this object already exists, it is replaced, and moved to the end of the list.
addRow() - Method in class mgui.interfaces.shapes.InterfaceShapesPanel.VertexSelectionTableModel
addSampleValues(ArrayList<Double>) - Method in class mgui.geometry.neuro.mesh.SampleRay
addSection(int, boolean) - Method in class mgui.interfaces.shapes.SectionSet3DInt: Add a section shape set to this section set.
addSegment(double) - Method in class mgui.interfaces.tools.shapes.util.RulerDialog
addSelect(Object3d) - Method in class au.edu.unsw.cse.VRMLState
addSelectionListener(ShapeSelectionListener) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
addSelectionListener(ShapeSelectionListener) - Method in class mgui.interfaces.shapes.ShapeModel3D
addSelectionSet(ShapeSelectionSet) - Method in class mgui.interfaces.InterfaceSelectionPanel
addSelectionSet(ShapeSelectionSet) - Method in class mgui.interfaces.shapes.ShapeModel3D
addSelectionSet(ShapeSelectionSet, ShapeModel3D) - Method in class mgui.interfaces.InterfaceDisplayPanel
addSelectionSet(ShapeSelectionSet, ShapeModel3D, boolean) - Method in class mgui.interfaces.InterfaceDisplayPanel: Deprecated.
call model directly
addSensor(DynamicModelEnvironmentSensor) - Method in interface mgui.models.dynamic.DynamicModel
addSensor(DynamicModelEnvironmentSensor) - Method in interface mgui.models.dynamic.DynamicModelEnvironment
addSensor(DynamicModelEnvironmentSensor) - Method in class mgui.models.environments.SimpleEnvironment
addSensor(DynamicModelEnvironmentSensor) - Method in class mgui.models.networks.AbstractNetworkModel
addSet(ShapeSelectionSet) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
addShape(Shape) - Method in class mgui.geometry.util.NodeShape
addShape(Polygon3D) - Method in class mgui.interfaces.shapes.PolygonSet3DInt
addShape(Polygon3D, boolean, boolean) - Method in class mgui.interfaces.shapes.PolygonSet3DInt
addShape(InterfaceShape) - Method in class mgui.interfaces.shapes.SectionSet3DInt
addShape(InterfaceShape) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
addShape(InterfaceShape) - Method in interface mgui.interfaces.shapes.ShapeSet: Adds a shape to this set
addShape(InterfaceShape) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
addShape(InterfaceShape) - Method in class mgui.interfaces.shapes.ShapeSet3DInt: Adds shape to this set, updates it, and fires this set's listeners.
addShape(InterfaceShape, boolean) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
addShape(Shape2DInt, boolean, boolean) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
addShape(Shape2DInt, int) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
addShape(Shape2DInt, int, boolean) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
addShape(Shape2DInt, int, boolean, boolean) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
addShape(Shape2DInt, ShapeSet2DInt) - Method in class mgui.interfaces.shapes.Shape2DSelectionSet
addShape(Shape3DInt, boolean) - Method in class mgui.interfaces.shapes.ShapeSet3DInt: Adds shape to this set.
addShape(Shape3DInt, boolean, boolean) - Method in class mgui.interfaces.shapes.PolygonSet3DInt
addShape(Shape3DInt, boolean, boolean) - Method in class mgui.interfaces.shapes.ShapeSet3DInt: Adds shape to this set.
addShape(Shape3DInt, int, boolean) - Method in class mgui.interfaces.shapes.ShapeSet3DInt: Adds shape to this set at index.
addShape(Shape3DInt, int, boolean, boolean) - Method in class mgui.interfaces.shapes.ShapeSet3DInt: Adds shape to this shape set.
addShape2D(Shape2DInt) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
addShape2D(Shape2DInt) - Method in class mgui.interfaces.InterfaceDisplayPanel
addShape2D(Shape2DInt, boolean, boolean) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
addShape2D(Shape2DInt, int, boolean) - Method in class mgui.interfaces.shapes.SectionSet3DInt
addShape2D(Shape2DInt, int, boolean, boolean) - Method in class mgui.interfaces.shapes.SectionSet3DInt: Adds a 2D shape to the section shape set at index section.
addShape2D(Shape2DInt, int, int) - Method in class mgui.morph.sections.MorphSections3DInt
addShape2D(Shape2DInt, int, int, boolean) - Method in class mgui.morph.sections.MorphSections3DInt
addShape2DChild(Shape2DInt) - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
addShape2DChild(Shape2DInt) - Method in class mgui.interfaces.shapes.Shape3DInt
addShapeInt(Shape2DInt) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
addShapeInt(Shape2DInt, int) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
addShapeInt(Shape3DInt) - Method in class mgui.interfaces.InterfaceDisplayPanel
addShapeListener(ShapeListener) - Method in class mgui.interfaces.InterfaceDisplayPanel
addShapeListener(ShapeListener) - Method in class mgui.interfaces.shapes.InterfaceShape
addShapeListener(ShapeListener) - Method in class mgui.interfaces.shapes.ShapeModel3D
addShapeModel(ShapeModel3D, boolean) - Method in class mgui.interfaces.InterfaceWorkspace: Adds model to this
addShapeModel(ShapeModel3D, boolean, boolean) - Method in class mgui.interfaces.InterfaceWorkspace: Adds model to this
addShapes(ArrayList<InterfaceShape>) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
addShapes(ArrayList<Shape3DInt>) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
addShapes(ArrayList<Shape3DInt>, boolean, boolean) - Method in class mgui.interfaces.shapes.ShapeSet3DInt: Add multiple shapes to this set.
addShapes(TreeSet<InterfaceShape>) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
addShapes(ShapeSelectionSet) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
addSplitPanelListener(SplitPanelListener) - Method in class mgui.interfaces.InterfaceSplitPanel
addStaticListener(StaticPipelineListener) - Method in class mgui.pipelines.InterfacePipeline
addStatusListener(GraphicMouseListener) - Method in class mgui.interfaces.graphics.InterfaceGraphic
addStream(OutputStream) - Method in class mgui.io.util.ParallelOutputStream
addSubdirectory(ProjectDirectory) - Method in class mgui.interfaces.projects.ProjectDirectory
addSubmenu(JMenu) - Method in class mgui.interfaces.menus.InterfacePopupMenu
addSubmenu(JMenu, String) - Method in class mgui.interfaces.menus.InterfacePopupMenu
addSynapse(Synapse) - Method in class mgui.neuro.components.AbstractDendrite: Add a synapse and create connection between this dendrite and synapse
addSynapse(Synapse) - Method in class mgui.neuro.components.compartments.CompartmentalDendrite
addSynapse(Synapse) - Method in interface mgui.neuro.components.Dendrite
addSynapse(Synapse) - Method in class mgui.neuro.components.simple.SimpleDendrite
addTab(String) - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
addTab(String, Component) - Method in class mgui.interfaces.InterfaceOptionsTabbedDialogBox
addTab(String, Component) - Method in class mgui.interfaces.InterfaceTabbedDialogBox
addTabbedDisplayListener(TabbedDisplayListener) - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
addTable(DataTable) - Method in class mgui.datasources.DataTableSet
addTask(VideoTask) - Method in class mgui.interfaces.graphics.video.Video
addTaskChild(TaskTreeNode) - Method in class mgui.interfaces.pipelines.trees.TaskTreeNode
addTempShape(BranchGroup) - Method in class mgui.interfaces.shapes.ShapeModel3D
addTempTable(DataTable) - Method in class mgui.datasources.DataSource: Attempts to add a temporary table to data source Returns true if successful.
addTextBox(InterfaceTextBox) - Method in class mgui.interfaces.InterfaceStatusBarPanel
addToEngine(DynamicModelEngine) - Method in interface mgui.models.dynamic.DynamicModelComponent
addToEngine(DynamicModelEngine) - Method in class mgui.neuro.components.AbstractNeuroComponent
addTreeModelListener(TreeModelListener) - Method in class mgui.interfaces.trees.AbstractTreeTableModel
addTreeNodeListener(TaskTreeNodeListener) - Method in class mgui.interfaces.pipelines.trees.TaskTreeNode
addTri(int) - Method in class mgui.geometry.mesh.MeshEdge
addType(int, String) - Method in class mgui.interfaces.maps.TypeMap
addUnion(ShapeSet, boolean) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
addUnionSet(SectionSet3DInt, boolean) - Method in class mgui.interfaces.shapes.SectionSet3DInt
addUnionSet(ShapeSet2DInt) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
addUnionSet(ShapeSet2DInt, boolean, boolean) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
addUnionSet(ShapeSet2DInt, int) - Method in class mgui.interfaces.shapes.SectionSet3DInt
addUnionSet(ShapeSet2DInt, int, boolean, boolean) - Method in class mgui.interfaces.shapes.SectionSet3DInt
addUnionSet(ShapeSet3DInt, boolean) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
addUnionSet(ShapeSet3DInt, boolean, boolean) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
addUnit(ConnectableNeuron) - Method in class mgui.neuro.networks.AbstractNeuralNet
addUnit(ConnectableNeuron, boolean) - Method in class mgui.neuro.networks.AbstractNeuralNet
addValue(double) - Method in class mgui.stats.Histogram
addValue(String, Object) - Method in class mgui.interfaces.queries.QueryResult: Adds the specified property to this result.
addVariable(String, String) - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog.YTableModel
addVariable(String, String, Color, Stroke) - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog.YTableModel
addVariable(VariableInt<?>) - Method in class mgui.interfaces.InterfaceWorkspace
addVector(Vector3D) - Method in class mgui.interfaces.shapes.VectorSet3DInt
addVector(Vector3D, boolean, boolean) - Method in class mgui.interfaces.shapes.VectorSet3DInt
addVector(Shape3DInt, boolean, boolean) - Method in class mgui.interfaces.shapes.VectorSet3DInt
addVertex(AbstractGraphNode) - Method in class mgui.interfaces.graphs.DefaultGraph
addVertex(Point2f) - Method in class mgui.geometry.Polygon2D: Adds a vertex.
addVertex(Point2f, boolean) - Method in class mgui.geometry.Polygon2D: Adds a vertex.
addVertex(Point2f, boolean, boolean) - Method in class mgui.geometry.Polygon2D: Adds a vertex.
addVertex(Point3f) - Method in class mgui.geometry.Mesh3D
addVertex(Point3f) - Method in class mgui.geometry.PointSet3D
addVertexData(String) - Method in class mgui.interfaces.shapes.InterfaceShape: Add a vertex-wise data column of type DataBuffer.TYPE_DOUBLE.
addVertexData(String) - Method in class mgui.interfaces.shapes.Shape2DInt
addVertexData(String, byte[]) - Method in class mgui.io.standard.gifti.xml.GiftiXMLHandler
addVertexData(String, double[]) - Method in class mgui.interfaces.shapes.InterfaceShape: Add data as a double array
addVertexData(String, int) - Method in class mgui.interfaces.shapes.InterfaceShape: Add a vertex-wise data column of type dataType, which must be one of DataBuffer.TYPE_DOUBLE, DataBuffer.TYPE_FLOAT, or DataBuffer.TYPE_INT.
addVertexData(String, int) - Method in class mgui.interfaces.shapes.Shape2DInt
addVertexData(String, int) - Method in class mgui.interfaces.shapes.Volume3DInt
addVertexData(String, int, ColourMap) - Method in class mgui.interfaces.shapes.InterfaceShape: Add a vertex-wise data column of type dataType, which must be one of DataBuffer.TYPE_DOUBLE, DataBuffer.TYPE_FLOAT, or DataBuffer.TYPE_INT.
addVertexData(String, String) - Method in class mgui.io.standard.gifti.xml.GiftiXMLHandler
addVertexData(String, ArrayList<MguiNumber>) - Method in class mgui.interfaces.shapes.InterfaceShape: Adds a new vertex data column and populates it with data.
addVertexData(String, ArrayList<MguiNumber>) - Method in class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt
addVertexData(String, ArrayList<MguiNumber>) - Method in class mgui.interfaces.shapes.neuro.CorticalSurfaceSet3DInt: Add node data to both hemispheres
addVertexData(String, ArrayList<MguiNumber>) - Method in class mgui.interfaces.shapes.Shape2DInt
addVertexData(String, ArrayList<MguiNumber>, int) - Method in class mgui.interfaces.shapes.neuro.CorticalSurfaceSet3DInt: Add node data to the specified hemisphere (specified by constants HEM_LEFT and HEM_RIGHT.
addVertexData(String, ArrayList<MguiNumber>, ColourMap) - Method in class mgui.interfaces.shapes.InterfaceShape: Adds vertex-wise data to this shape.
addVertexData(String, ArrayList<MguiNumber>, NameMap) - Method in class mgui.interfaces.shapes.InterfaceShape: Adds vertex-wise data to this shape.
addVertexData(String, ArrayList<MguiNumber>, NameMap) - Method in class mgui.interfaces.shapes.Shape2DInt
addVertexData(String, ArrayList<MguiNumber>, NameMap) - Method in class mgui.interfaces.shapes.VectorSet3DInt
addVertexData(String, ArrayList<MguiNumber>, NameMap, ColourMap) - Method in class mgui.interfaces.shapes.InterfaceShape: Adds vertex-wise data to this shape.
addVertexData(String, ArrayList<MguiNumber>, NameMap, ColourMap) - Method in class mgui.interfaces.shapes.Volume3DInt
addVertexData(VertexDataColumn) - Method in class mgui.interfaces.shapes.InterfaceShape: Add a vertex-wise data column of type DataBuffer.TYPE_DOUBLE.
addVertexData(VertexDataColumn) - Method in class mgui.interfaces.shapes.Volume3DInt
addVertices(ArrayList<Point3f>) - Method in class mgui.geometry.Mesh3D
addVertices(ArrayList<Point3f>) - Method in class mgui.geometry.PointSet3D
addVideo(Video) - Method in class mgui.interfaces.InterfaceWorkspace
addVideoTaskType(String, VideoTaskType) - Static method in class mgui.interfaces.InterfaceEnvironment
addView3D(View3D) - Method in class mgui.interfaces.InterfaceWorkspace
addVolume(int, float, Volume3DInt, boolean) - Method in class mgui.interfaces.shapes.VolumeSet3DInt: Adds volume at position index of this overlay set, with given alpha level, and redraws the overlay.
addVolume(Volume3DInt, float, boolean) - Method in class mgui.interfaces.shapes.VolumeSet3DInt: Adds volume to top of this overlay set, with given alpha level, and redraws the overlay.
addWindow(InterfaceGraphic2D) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
addWindow(InterfaceGraphicWindow) - Method in class mgui.interfaces.InterfaceDisplayPanel
addWindow(InterfaceGraphicWindow, String) - Method in class mgui.interfaces.InterfaceDisplayPanel: Adds a panel to this display panel, using the default split position, which depends on the previous addition.
addWindow(InterfaceGraphicWindow, String) - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
addWindowListener(WindowListener) - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
addXYPair(String, String, String) - Method in class mgui.interfaces.plots.sgt.SgtScatterPlotDialog.XYTableModel
addXYPair(String, String, String) - Method in class mgui.interfaces.plots.VariablePlotXYDataSource: Adds an X-Y variable pair, as strings of the form:
addXYPair(String, String, String, Color, Stroke) - Method in class mgui.interfaces.plots.sgt.SgtScatterPlotDialog.XYTableModel
addYVariable(String) - Method in class mgui.interfaces.plots.VariablePlotTimeSeriesDataSource: Adds a Y variable, as a string of the form:
adj - Variable in class mgui.neuro.components.compartments.SimpleCompartment
adjustCamera(double, double) - Method in class au.edu.unsw.cse.View3d: Adjust the position of the camera, given a displacement of the view position relative to U and V vectors
adjustCameraDI(double, double) - Method in class au.edu.unsw.cse.View3dInfo: Adjust the position of the camera, given a displacement of the view position relative to U and V vectors adjustment is given in Device Independant coords
ALIGN_CENTER - Static variable in class mgui.geometry.Text2D
ALIGN_LEFT - Static variable in class mgui.geometry.Text2D
ALIGN_RIGHT - Static variable in class mgui.geometry.Text2D
AlignmentX - Variable in class mgui.interfaces.shapes.Text2DInt
AlignmentY - Variable in class mgui.interfaces.shapes.Text2DInt
All - mgui.interfaces.shapes.volume.Volume3DTexture.UpdateTextureType
allow_changes - Variable in class mgui.interfaces.gui.AbstractProgressUpdater
allow_dim_change - Variable in class mgui.io.domestic.shapes.VolumeInputOptions
allow_geom_change - Variable in class mgui.io.domestic.shapes.VolumeInputOptions
allow_unlisted - Variable in class mgui.interfaces.attributes.AttributeSelection
allowChanges() - Method in class mgui.interfaces.gui.AbstractProgressUpdater
allowChanges() - Method in class mgui.interfaces.gui.InterfaceProgressBar
allowChanges() - Method in interface mgui.interfaces.ProgressUpdater: Allow processes to change the settings of this progress bar? Implementing classes can choose whether or not to enforce this.
allowsUnlisted() - Method in class mgui.interfaces.attributes.AttributeSelection: Whether this list allows unlisted values
allowUnlisted(boolean) - Method in class mgui.interfaces.attributes.AttributeSelection: Set whether this list allows unlisted values
alpha - Variable in class mgui.image.util.WindowedColourModel
alpha - Variable in class mgui.interfaces.shapes.volume.Volume3DRenderer
alpha_max - Variable in class mgui.io.domestic.shapes.VolumeInputOptions
alpha_min - Variable in class mgui.io.domestic.shapes.VolumeInputOptions
alphaMax - Variable in class mgui.image.util.WindowedColourModel
alphaMin - Variable in class mgui.image.util.WindowedColourModel
AlphaSliderEditor() - Constructor for class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel.AlphaSliderEditor
AlphaSliderRenderer() - Constructor for class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel.AlphaSliderRenderer
already_responded - Variable in class mgui.interfaces.shapes.util.ShapeEvent
alreadyResponded(ShapeListener) - Method in class mgui.interfaces.shapes.util.ShapeEvent
ambient - Variable in class au.edu.unsw.cse.View3d
ambientLight - Variable in class mgui.interfaces.graphics.InterfaceGraphic3D
AmiraTractLoader - Class in mgui.io.foreign.amira
AmiraTractLoader(File) - Constructor for class mgui.io.foreign.amira.AmiraTractLoader
AnalyzeRotateVolume - Class in mgui.io.foreign.analyze: Rotate an Analyze volume about a specified axis, by some multiple of 90 degrees.
AnalyzeRotateVolume() - Constructor for class mgui.io.foreign.analyze.AnalyzeRotateVolume
AnalyzeTransform - Class in mgui.io.foreign.analyze: Holds a transform for an Analyze file and provides functions to apply this transform on a data set.
AnalyzeTransform() - Constructor for class mgui.io.foreign.analyze.AnalyzeTransform
Anchor(MguiNumber, Colour) - Constructor for class mgui.interfaces.maps.ContinuousColourMap.Anchor
anchors - Variable in class mgui.interfaces.maps.ContinuousColourMap
angle - Variable in class mgui.geometry.Radius2D
angle - Variable in class mgui.geometry.util.GeometryFunctions.AnglePoint2D
angleBuffer - Variable in class mgui.interfaces.shapes.volume.Volume3DRenderer
AngleChanged - mgui.interfaces.events.CameraEvent.EventType
AnglePoint2D(Point2d) - Constructor for class mgui.geometry.util.GeometryFunctions.AnglePoint2D
AnimationWidget - Class in au.edu.unsw.cse
AnimationWidget(Viewer) - Constructor for class au.edu.unsw.cse.AnimationWidget
AnimationWidgetVRML - Class in au.edu.unsw.cse
AnimationWidgetVRML(Viewer) - Constructor for class au.edu.unsw.cse.AnimationWidgetVRML
Annotation - mgui.io.foreign.freesurfer.FreesurferVertexDataInOptions.Format
ANZ_DAT_EXT - Static variable in class mgui.io.standard.nifti.Nifti1Dataset
ANZ_HDR_EXT - Static variable in class mgui.io.standard.nifti.Nifti1Dataset
ANZ_HDR_SIZE - Static variable in class mgui.io.standard.nifti.Nifti1Dataset
ANZ_MAGIC_STRING - Static variable in class mgui.io.standard.nifti.Nifti1Dataset
append(Object3dList) - Method in class au.edu.unsw.cse.Object3dList
append(String) - Method in class au.edu.unsw.cse.VRMLState
append(String) - Method in class mgui.interfaces.queries.QueryResultPanel
append(PipelineTask) - Method in class mgui.pipelines.InterfacePipeline
Append - mgui.interfaces.tools.graphs.ToolGraphImage.Type
appendChannel(String, int) - Method in class mgui.interfaces.plots.PlotXYDataSource
appendPage() - Method in class mgui.interfaces.layouts.LayoutDocument: Appends a single page to this document.
appendPaintable(VisualizationServer.Paintable) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
appendPoints(PointSet3DInt) - Method in class mgui.interfaces.shapes.PointSet3DInt: Appends points to this point set.
appendPoints(PointSet3DInt, boolean) - Method in class mgui.interfaces.shapes.PointSet3DInt: Appends points to this point set.
appendTempShape(Shape2DInt) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D: Append a temporary shape to the bottom of the stack (renders first)
appendText(String) - Method in class mgui.interfaces.console.InterfaceConsoleDisplay: Appends text to this console as type Output.
appendText(String, InterfaceConsoleDisplay.MessageType) - Method in class mgui.interfaces.console.InterfaceConsoleDisplay: Appends text this console as the specified type.
appendToSuffix(String) - Method in class au.edu.unsw.cse.VRMLState
Applet3d - Class in au.edu.unsw.cse
Applet3d() - Constructor for class au.edu.unsw.cse.Applet3d
AppletDepth - Class in au.edu.unsw.cse
AppletDepth() - Constructor for class au.edu.unsw.cse.AppletDepth
AppletHull - Class in au.edu.unsw.cse
AppletHull() - Constructor for class au.edu.unsw.cse.AppletHull
AppletPatch - Class in au.edu.unsw.cse
AppletPatch() - Constructor for class au.edu.unsw.cse.AppletPatch
appletResize(int, int) - Method in class au.edu.unsw.cse.FakeAppletStub
apply - Variable in class mgui.pipelines.TaskParameterInstance
apply_clip - Variable in class mgui.interfaces.shapes.util.ClipPlane
apply_gaussian - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
Apply_Input_Opt - mgui.interfaces.io.InterfaceFilePanel.Command
apply_mask - Variable in class mgui.interfaces.shapes.util.GridSampleModel
apply_mask - Variable in class mgui.interfaces.shapes.Volume3DInt
apply_masks - Variable in class mgui.io.domestic.shapes.VolumeOutputOptions
Apply_Output_Opt - mgui.interfaces.io.InterfaceFilePanel.Command
apply_transforms - Variable in class mgui.io.standard.gifti.GiftiInputOptions
applyFilter(ArrayList<? extends Comparable>, String) - Method in class mgui.interfaces.datasources.DataTableModel
applyInstances(boolean) - Method in class mgui.interfaces.projects.InterfaceProject
applyMask() - Method in class mgui.interfaces.shapes.Volume3DInt: Applies the mask specified in params to the data in this volume.
applyMask(ImageComponent3D, int, int, int, int, int, VolumeMaskOptions_old) - Static method in class mgui.geometry.volume.VolumeFunctions: Applies a voxel mask to an ImageComponent3D object, using the parameters in params.
applyOverride() - Method in class mgui.interfaces.shapes.ShapeSet2DInt: Applies this set's attributes to all members.
applyOverride() - Method in class mgui.interfaces.shapes.ShapeSet3DInt: Applies this set's attributes to all members.
applyRotation(VolumeFunctions.VolumeAxis, VolumeFunctions.VolumeRotationAngle, Volume3DInt, InterfaceProgressBar) - Static method in class mgui.geometry.volume.VolumeFunctions: Rotates a Grid3D about one of its basis vectors (axes), either 90, 180, or 270 degrees, resizes the relevant dimensions, and returns the new grid.
applyRotationBlocking(VolumeFunctions.VolumeAxis, VolumeFunctions.VolumeRotationAngle, Volume3DInt) - Static method in class mgui.geometry.volume.VolumeFunctions: Rotates a Grid3D about one of its basis vectors (axes), either 90, 180, or 270 degrees, resizes the relevant dimensions, and returns the new grid.
applyRotationBlocking(VolumeFunctions.VolumeAxis, VolumeFunctions.VolumeRotationAngle, Volume3DInt, InterfaceProgressBar) - Static method in class mgui.geometry.volume.VolumeFunctions: Rotates a Volume3DInt about one of its basis vectors (axes), either 90, 180, or 270 degrees, resizes the relevant dimensions, and returns the new grid.
applySubdirs(boolean) - Method in class mgui.interfaces.projects.InterfaceProject
applySubdirs(boolean) - Method in class mgui.neuro.imaging.camino.CaminoProject
applySubjects(boolean) - Method in class mgui.neuro.imaging.camino.CaminoProject
arCollections - Class in mgui.util
arCollections() - Constructor for class mgui.util.arCollections
arComparable - Interface in mgui.util
ARGB - Static variable in class mgui.util.Colours
arrFlip(byte[]) - Static method in class mgui.neuro.imaging.camino.tasks.Shredder2: Reverses the order of the bytes in the array.
ArrowVisibility(boolean) - Constructor for class mgui.interfaces.graphs.util.GraphFunctions.ArrowVisibility
as_discrete - Variable in class mgui.io.domestic.maps.DiscreteColourMapInOptions
as_one_column - Variable in class mgui.io.domestic.shapes.ShapeDataInputOptions
as_subfolders - Variable in class mgui.io.domestic.shapes.ShapeModel3DOutputOptions
as_type - Variable in class mgui.io.domestic.variables.MatrixInOptions
asArgs() - Method in class mgui.pipelines.TaskParameterInstance
asArgs(String, String) - Method in class mgui.pipelines.TaskParameterInstance
asArgs(String, InterfaceProject) - Method in class mgui.pipelines.TaskParameterInstance
AsBox - mgui.interfaces.gui.InterfaceComboBox.RenderMode
AsBox - mgui.interfaces.gui.InterfaceComboBoxBak.RenderMode
Ascii - mgui.interfaces.xml.XMLObject.XMLEncoding
Ascii - mgui.io.domestic.maps.DiscreteColourMapInOptions.Format
Ascii - mgui.io.domestic.maps.NameMapLoader.Format
Ascii - mgui.io.domestic.printing.StlOutputOptions.Format
Ascii - mgui.io.foreign.freesurfer.FreesurferVertexDataInOptions.Format
Ascii - mgui.io.standard.gifti.GiftiOutputOptions.GiftiEncoding
AsciiFull - mgui.io.domestic.variables.MatrixInOptions.Format
AsciiSparse - mgui.io.domestic.variables.MatrixInOptions.Format
AsCubes - mgui.interfaces.shapes.volume.Volume3DRenderer.Mode
AsKeys - mgui.interfaces.attributes.AttributeSelectionMap.ComboMode
asLineSegment() - Method in class mgui.geometry.Vector2D
AsSections - mgui.interfaces.shapes.volume.Volume3DRenderer.Mode
asShapeSet2D() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
asShapeSet3D() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
assigned_project - Variable in class mgui.pipelines.InterfacePipeline
AsValues - mgui.interfaces.attributes.AttributeSelectionMap.ComboMode
asVector() - Method in class mgui.geometry.LineSegment2D
AsVolume - mgui.interfaces.shapes.volume.Volume3DRenderer.Mode
atlas_dir - Variable in class mgui.interfaces.neuro.CorticalThicknessOptions
atlases - Variable in class mgui.interfaces.neuro.CorticalThicknessOptions
Attr - Class in mgui.io.foreign.vol
attribute - Variable in class mgui.interfaces.attributes.video.AttributeObjectVideoTask
Attribute<V> - Class in mgui.interfaces.attributes: Class serves as a general-purpose attribute.
Attribute() - Constructor for class mgui.interfaces.attributes.Attribute
Attribute(String, Class<V>) - Constructor for class mgui.interfaces.attributes.Attribute: Instantiates a new Attribute object.
Attribute(String, V) - Constructor for class mgui.interfaces.attributes.Attribute: Instantiates a new Attribute object.
Attribute(String, V, boolean) - Constructor for class mgui.interfaces.attributes.Attribute: Instantiates a new Attribute object.
Attribute(String, V, boolean, boolean) - Constructor for class mgui.interfaces.attributes.Attribute: Instantiates a new Attribute object.
attribute_handler - Variable in class mgui.io.domestic.shapes.xml.InterfaceShapeXMLHandler
attribute_handler - Variable in class mgui.io.domestic.shapes.xml.SectionSet3DXMLHandler
attribute_handler - Variable in class mgui.io.domestic.shapes.xml.ShapeSet2DXMLHandler
attribute_handler - Variable in class mgui.io.domestic.shapes.xml.ShapeSet3DXMLHandler
attribute_list - Variable in class mgui.io.domestic.attributes.AttributeXMLHandler
AttributeButton - Class in mgui.interfaces.attributes.tree
AttributeButton() - Constructor for class mgui.interfaces.attributes.tree.AttributeButton
AttributeButton(String) - Constructor for class mgui.interfaces.attributes.tree.AttributeButton
AttributeButton(Attribute) - Constructor for class mgui.interfaces.attributes.tree.AttributeButton
AttributeButton(Attribute, String) - Constructor for class mgui.interfaces.attributes.tree.AttributeButton
AttributeCellEditor - Class in mgui.interfaces.attributes.table
AttributeCellEditor() - Constructor for class mgui.interfaces.attributes.table.AttributeCellEditor
AttributeCellRenderer - Class in mgui.interfaces.attributes.table
AttributeCellRenderer() - Constructor for class mgui.interfaces.attributes.table.AttributeCellRenderer
AttributeComparator - Class in mgui.interfaces.attributes
AttributeComparator() - Constructor for class mgui.interfaces.attributes.AttributeComparator
AttributeDialogBox - Class in mgui.interfaces.attributes: Non-modal, always-on-top dialog box which allows a user to select an attribute object and modify its attributes.
AttributeDialogBox() - Constructor for class mgui.interfaces.attributes.AttributeDialogBox
AttributeDialogBox(Class<?>) - Constructor for class mgui.interfaces.attributes.AttributeDialogBox
AttributeDialogBox(JFrame, AttributeObject) - Constructor for class mgui.interfaces.attributes.AttributeDialogBox
AttributeDialogBox(JFrame, AttributeObject, Class<?>) - Constructor for class mgui.interfaces.attributes.AttributeDialogBox
AttributeEvent - Class in mgui.interfaces.attributes: Represents an event on an Attribute object.
AttributeEvent(Attribute<?>) - Constructor for class mgui.interfaces.attributes.AttributeEvent
AttributeException - Exception in mgui.interfaces.attributes: Represents an exception on an Attribute object.
AttributeException(String) - Constructor for exception mgui.interfaces.attributes.AttributeException
AttributeList - Class in mgui.interfaces.attributes: Stores a list of Attribute objects, and provides methods to access and modify them, as well as set methods to intersect and union with other lists.
AttributeList() - Constructor for class mgui.interfaces.attributes.AttributeList
AttributeListener - Interface in mgui.interfaces.attributes: Defines an interface for objects which listen for changes in an Attribute object.
AttributeModified - mgui.interfaces.shapes.util.ShapeEvent.EventType
AttributeNode2D - Class in mgui.morph.sections
AttributeNode2D() - Constructor for class mgui.morph.sections.AttributeNode2D
AttributeNode2D(Point2f) - Constructor for class mgui.morph.sections.AttributeNode2D
AttributeNodeComparator - Class in mgui.morph.sections
AttributeNodeComparator() - Constructor for class mgui.morph.sections.AttributeNodeComparator
AttributeObject - Interface in mgui.interfaces.attributes: Interface for objects which specify their attributes using an AttributeList.
AttributeObjectVideoTask - Class in mgui.interfaces.attributes.video: Represents a video task which modifies an Attribute.
AttributeObjectVideoTask() - Constructor for class mgui.interfaces.attributes.video.AttributeObjectVideoTask
AttributeObjectVideoTask(long, long, AttributeObject, String, Object) - Constructor for class mgui.interfaces.attributes.video.AttributeObjectVideoTask: Constructs a basic set attribute task (no iteration)
AttributeObjectVideoTask(long, long, AttributeObject, String, Object, Object, boolean, double) - Constructor for class mgui.interfaces.attributes.video.AttributeObjectVideoTask: Constructs a set attribute task with possible iteration
AttributeObjectVideoTaskDialogPanel - Class in mgui.interfaces.attributes.video: Panel for defining an AttributeObjectTask.
AttributeObjectVideoTaskDialogPanel() - Constructor for class mgui.interfaces.attributes.video.AttributeObjectVideoTaskDialogPanel
AttributeObjectVideoTaskDialogPanel(AttributeObjectVideoTask) - Constructor for class mgui.interfaces.attributes.video.AttributeObjectVideoTaskDialogPanel
attributes - Variable in class mgui.datasources.DataConnection
attributes - Variable in class mgui.datasources.DataField
attributes - Variable in class mgui.datasources.DataSourceDriver
attributes - Variable in class mgui.geometry.volume.VolumeEngine
attributes - Variable in class mgui.interfaces.attributes.AttributeList
attributes - Variable in class mgui.interfaces.attributes.table.AttributeTableModel
attributes - Variable in class mgui.interfaces.graphs.InterfaceAbstractGraph
attributes - Variable in class mgui.interfaces.InterfacePanel
attributes - Variable in class mgui.interfaces.layouts.LayoutDocument
attributes - Variable in class mgui.interfaces.layouts.LayoutItem
attributes - Variable in class mgui.interfaces.maps.Camera3D.CameraLightSource
attributes - Variable in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
attributes - Variable in class mgui.interfaces.plots.InterfacePlotObject
attributes - Variable in class mgui.interfaces.plots.mgui.PlotMap2D
attributes - Variable in class mgui.interfaces.plots.osp.InterfaceStripChart.Variable
attributes - Variable in class mgui.interfaces.plots.sgt.SgtAxis
attributes - Variable in class mgui.interfaces.plots.sgt.SgtPlotLayout
attributes - Variable in class mgui.interfaces.projects.ProjectInstance
attributes - Variable in class mgui.interfaces.shapes.InterfaceShape
attributes - Variable in class mgui.interfaces.shapes.selection.ShapeSelectionSet
attributes - Variable in class mgui.interfaces.shapes.VertexDataColumn
attributes - Variable in class mgui.interfaces.tools.shapes.ToolCreateMeshFromPolylinesOptions
attributes - Variable in class mgui.interfaces.variables.VariableInt
attributes - Variable in class mgui.models.dynamic.functions.Function
attributes - Variable in class mgui.models.networks.AbstractNetworkModel
attributes - Variable in class mgui.models.updaters.SimpleEnvironmentUpdater
attributes - Variable in class mgui.morph.sections.AttributeNode2D
attributes - Variable in class mgui.morph.sections.NodeMap2D
attributes - Variable in class mgui.neuro.components.AbstractNeuroComponent
attributes - Variable in class mgui.pipelines.PipelineTask
AttributeSelection<V> - Class in mgui.interfaces.attributes: Extends Attribute to allow a list of options, one or none of which is the current value.
AttributeSelection(String, ArrayList<V>, Class<V>) - Constructor for class mgui.interfaces.attributes.AttributeSelection: Constructs a new attribute selection with default initial selection.
AttributeSelection(String, ArrayList<V>, Class<V>, boolean, boolean) - Constructor for class mgui.interfaces.attributes.AttributeSelection: Constructs a new attribute selection with default initial selection.
AttributeSelection(String, ArrayList<V>, Class<V>, V) - Constructor for class mgui.interfaces.attributes.AttributeSelection: Constructs a new attribute selection with the specified initial selection.
AttributeSelection(String, ArrayList<V>, Class<V>, V, int) - Constructor for class mgui.interfaces.attributes.AttributeSelection: Constructs a new attribute selection with the specified initial selection and combo box width.
AttributeSelection(String, ArrayList<V>, Class<V>, V, int, boolean, boolean) - Constructor for class mgui.interfaces.attributes.AttributeSelection
AttributeSelectionMap<V> - Class in mgui.interfaces.attributes: Represents an Attribute with possible values mapped with String keys.
AttributeSelectionMap(String, HashMap<String, V>, Class<V>) - Constructor for class mgui.interfaces.attributes.AttributeSelectionMap
AttributeSelectionMap(String, HashMap<String, V>, Class<V>, String) - Constructor for class mgui.interfaces.attributes.AttributeSelectionMap
AttributeSelectionMap.ComboMode - Enum in mgui.interfaces.attributes
AttributeTableModel - Class in mgui.interfaces.attributes.table: Table model designed to display updatable Attributes.
AttributeTableModel() - Constructor for class mgui.interfaces.attributes.table.AttributeTableModel
AttributeTableModel(AttributeList) - Constructor for class mgui.interfaces.attributes.table.AttributeTableModel
AttributeTreeCellEditor - Class in mgui.interfaces.attributes.tree: Cell editor for an attribute tree node.
AttributeTreeCellEditor() - Constructor for class mgui.interfaces.attributes.tree.AttributeTreeCellEditor
AttributeTreeCellRenderer - Class in mgui.interfaces.attributes.tree
AttributeTreeCellRenderer() - Constructor for class mgui.interfaces.attributes.tree.AttributeTreeCellRenderer
AttributeTreeNode - Class in mgui.interfaces.attributes.tree: Provides a tree node to display and update an Attribute.
AttributeTreeNode() - Constructor for class mgui.interfaces.attributes.tree.AttributeTreeNode
AttributeTreeNode(Attribute<?>) - Constructor for class mgui.interfaces.attributes.tree.AttributeTreeNode
attributeUpdated(AttributeEvent) - Method in class mgui.datasources.DataField
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.attributes.AttributeList
attributeUpdated(AttributeEvent) - Method in interface mgui.interfaces.attributes.AttributeListener: Called when an Attribute's value has been updated.
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.graphics.Graphic2DGrid
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.graphics.util.Axes3D
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.InterfacePanel
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.plots.InterfacePlot
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.plots.osp.InterfacePlotOsp
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.plots.osp.InterfaceStripChart
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.plots.sgt.InterfacePlotSgt
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.plots.sgt.SgtAxis
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.plots.sgt.SgtLine
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.plots.sgt.SgtPlotObject
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.plots.sgt.SgtPointSet
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.projects.InterfaceProject
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.projects.ProjectDataItem
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.projects.ProjectInstance
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.shapes.LPolygon3DInt
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.shapes.Mesh3DInt
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.shapes.neuro.CorticalSurfaceSet3DInt
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.shapes.PointSet3DInt
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.shapes.Polygon3DInt
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.shapes.PolygonSet3DInt
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.shapes.SectionSet3DInt
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.shapes.Shape2DInt: Responds to a change in a specific attribute by notifying this ShapeInt's shape listeners with an AttributeModified shape event.
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.shapes.Shape3DInt: Responds to an update in one of this shape's attributes.
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.shapes.TensorVolume3DInt
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.shapes.Vector2DInt
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.shapes.Vector3DInt
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.shapes.VectorSet3DInt
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.shapes.VertexDataColumn
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
attributeUpdated(AttributeEvent) - Method in class mgui.interfaces.shapes.Volume3DInt
attributeUpdated(AttributeEvent) - Method in class mgui.neuro.components.AbstractNeuroComponent
AttributeXMLHandler - Class in mgui.io.domestic.attributes: Handles XML events for Attribute objects.
AttributeXMLHandler() - Constructor for class mgui.io.domestic.attributes.AttributeXMLHandler
attrModel - Variable in class mgui.interfaces.attributes.InterfaceAttributePanel
attrTable - Variable in class mgui.interfaces.attributes.InterfaceAttributePanel
au.edu.unsw.cse - package au.edu.unsw.cse
auto - Variable in class au.edu.unsw.cse.AnimationWidget
Auto - mgui.io.domestic.maps.NameMapLoader.Format
auto_interval_x - Variable in class mgui.interfaces.plots.sgt.SgtPlotLayout
auto_interval_y - Variable in class mgui.interfaces.plots.sgt.SgtPlotLayout
auto_range_x - Variable in class mgui.interfaces.plots.sgt.SgtPlotLayout
auto_range_y - Variable in class mgui.interfaces.plots.sgt.SgtPlotLayout
aux_file - Variable in class mgui.io.standard.nifti.Nifti1Dataset
Average - mgui.geometry.volume.VolumeFunctions.Operation
average_neighbour_rays - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
average_neighbour_weight - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
axes - Variable in class mgui.interfaces.graphics.InterfaceGraphic3D
Axes - Class in au.edu.unsw.cse: A coordinate axes object
Axes() - Constructor for class au.edu.unsw.cse.Axes
axes_max_scale - Variable in class mgui.interfaces.graphics.util.Axes3D
axes_min_scale - Variable in class mgui.interfaces.graphics.util.Axes3D
axes_transform - Variable in class mgui.interfaces.graphics.InterfaceGraphic3D
Axes3D - Class in mgui.interfaces.graphics.util: Renders 3D axes on a 3D window.
Axes3D() - Constructor for class mgui.interfaces.graphics.util.Axes3D
Axes3D(InterfaceGraphic3D) - Constructor for class mgui.interfaces.graphics.util.Axes3D
axesChanged(AxesEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
axesChanged(AxesEvent) - Method in interface mgui.interfaces.graphics.util.AxesListener
AxesEvent - Class in mgui.interfaces.graphics.util
AxesEvent(Axes3D) - Constructor for class mgui.interfaces.graphics.util.AxesEvent
AxesListener - Interface in mgui.interfaces.graphics.util: Listener for changes on an Axes3D object
axis - Variable in class mgui.geometry.util.K3DBinaryTree.K3DNode
axis - Variable in class mgui.interfaces.plots.mgui.MguiPlotLayout
axis - Variable in class mgui.interfaces.plots.sgt.SgtAxis
axis_label_height - Variable in class mgui.interfaces.plots.sgt.SgtPlotLayoutOptions: Height of axis labels in physical units
axis_LOS - Variable in class mgui.interfaces.graphics.video.SetView3DTask
axis_map - Variable in class mgui.interfaces.plots.sgt.SgtPlotLayout
axis_r - Variable in class mgui.io.foreign.wunil.WunilDataset
axis_r - Variable in class mgui.io.standard.nifti.NiftiMetadata
axis_s - Variable in class mgui.io.foreign.wunil.WunilDataset
axis_s - Variable in class mgui.io.standard.nifti.NiftiMetadata
axis_t - Variable in class mgui.io.foreign.wunil.WunilDataset
axis_t - Variable in class mgui.io.standard.nifti.NiftiMetadata
axis_title_height - Variable in class mgui.interfaces.plots.sgt.SgtPlotLayoutOptions: Height of axis title in physical units
axis_Up - Variable in class mgui.interfaces.graphics.video.SetView3DTask
axis_vectors - Variable in class mgui.interfaces.graphics.util.Axes3D
axis_x - Variable in class mgui.io.domestic.shapes.VolumeInputOptions
axis_y - Variable in class mgui.io.domestic.shapes.VolumeInputOptions
axis_z - Variable in class mgui.io.domestic.shapes.VolumeInputOptions
axisSwitch - Variable in class mgui.interfaces.shapes.volume.Volume3DRenderer
axon - Variable in class mgui.neuro.components.AbstractNeuron
Axon - Interface in mgui.neuro.components

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