Index

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E

ear_nasium_plane - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions

edge_appearance - Variable in class mgui.interfaces.shapes.graphs.Graph3DInt

edge_appearance - Variable in class mgui.interfaces.shapes.Mesh3DInt

edge_appearance - Variable in class mgui.interfaces.shapes.Polygon3DInt

edge_appearance - Variable in class mgui.interfaces.shapes.PolygonSet3DInt

edge_appearance - Variable in class mgui.interfaces.shapes.Vector3DInt

edge_appearance - Variable in class mgui.interfaces.shapes.VectorSet3DInt

edge_label_renderer - Variable in class mgui.interfaces.graphs.InterfaceGraphDisplay

edge_label_renderer - Variable in class mgui.interfaces.shapes.graphs.Graph2DInt

Edge3d - Class in au.edu.unsw.cse

Edge3d(Point3d, Point3d) - Constructor for class au.edu.unsw.cse.Edge3d

Edge3d(Point3d, Point3d, int) - Constructor for class au.edu.unsw.cse.Edge3d

Edge3dPlus - Class in au.edu.unsw.cse

Edge3dPlus(Point3d, Point3d, int) - Constructor for class au.edu.unsw.cse.Edge3dPlus

EdgeFactory() - Constructor for class mgui.interfaces.graphs.util.GraphFunctions.EdgeFactory

EdgeFactory(Class<T>) - Constructor for class mgui.interfaces.graphs.util.GraphFunctions.EdgeFactory

edges - Variable in class mgui.geometry.mesh.MeshEdgeSet

edges - Variable in class mgui.geometry.mesh.MeshTriangle

edges - Variable in class mgui.interfaces.shapes.Mesh2DInt

EdgeStack - Class in au.edu.unsw.cse

This class stores the edges that still need to be processed.

EdgeStack() - Constructor for class au.edu.unsw.cse.EdgeStack

EdgeStackTest - Class in au.edu.unsw.cse

EdgeStackTest() - Constructor for class au.edu.unsw.cse.EdgeStackTest

EdgeVisibility(boolean) - Constructor for class mgui.interfaces.graphs.util.GraphFunctions.EdgeVisibility

edit() - Method in class mgui.datasources.DataRecordSet

Initiate editing of current record.

editable - Variable in class mgui.interfaces.io.temp.TempBitmapDrawer

EditDataFieldDialogBox - Class in mgui.interfaces.datasources

Dialog box to define a data field.

EditDataFieldDialogBox(JFrame, DataFieldOptions) - Constructor for class mgui.interfaces.datasources.EditDataFieldDialogBox

EditDataTableDialog - Class in mgui.interfaces.datasources

Interface allowing the user to create a new table, or edit an existing one, with defined fields.

EditDataTableDialog(JFrame, DataTableOptions) - Constructor for class mgui.interfaces.datasources.EditDataTableDialog

editingCanceled(ChangeEvent) - Method in class mgui.interfaces.queries.tables.QueryResultTableTreeRenderer

editingStopped(ChangeEvent) - Method in class mgui.interfaces.queries.tables.QueryResultTableTreeRenderer

Editor() - Constructor for class mgui.interfaces.maps.DiscreteColourMapTable.Editor

editors - Variable in class mgui.interfaces.trees.InterfaceTreeCellEditor

EditQueryDialogBox - Class in mgui.interfaces.datasources

Simple dialog to edit a query.

EditQueryDialogBox(JFrame, DataQueryOptions) - Constructor for class mgui.interfaces.datasources.EditQueryDialogBox

elapsed - Variable in class mgui.command.CommandInterpreter

elementAt(int) - Method in class au.edu.unsw.cse.Object3dList

elementCount - Variable in class au.edu.unsw.cse.Object3dList

elementData - Variable in class au.edu.unsw.cse.Object3dList

elements - Variable in class mgui.interfaces.variables.StringVectorInt

elements - Variable in class mgui.interfaces.variables.VectorInt

ellipse - Variable in class mgui.interfaces.tools.shapes.ToolCreateEllipse2D

Ellipse2D - Class in mgui.geometry

Represents an ellipse shape.

Ellipse2D() - Constructor for class mgui.geometry.Ellipse2D

Creates an ellipse centered on (0,0) with uniform radius of 1.0.

Ellipse2D(Point2f, Vector2f, float) - Constructor for class mgui.geometry.Ellipse2D

Creates an ellipsed centered on center, with given "a" axis and perpendicular "b" axis of magnitude b.

Ellipse2DInt - Class in mgui.interfaces.shapes

Interface for a Ellipse2D shape.

Ellipse2DInt() - Constructor for class mgui.interfaces.shapes.Ellipse2DInt

Ellipse2DInt(Ellipse2D) - Constructor for class mgui.interfaces.shapes.Ellipse2DInt

embed_single_polygon - Variable in class mgui.io.domestic.shapes.PolygonSet3DLoader

emission - Variable in class mgui.interfaces.plots.MatrixPlotDataSource

emission - Variable in class mgui.interfaces.plots.PlotXYDataSource

enableIntensity(boolean) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel

enableMasking() - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel

enableOps(boolean) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel

encoding - Variable in class mgui.io.foreign.caret.CaretMetricLoader.Header

encoding - Variable in class mgui.io.foreign.caret.CaretSurfaceInfo

encoding - Variable in class mgui.io.standard.gifti.GiftiOutputOptions

encoding - Variable in class mgui.io.standard.xml.XMLOutputOptions

encodings - Variable in class mgui.io.domestic.shapes.ShapeOutputOptions

end_value - Variable in class mgui.interfaces.attributes.video.AttributeObjectVideoTask

endElement(String, String, String) - Method in class mgui.interfaces.graphics.video.xml.VideoXMLHandler

endElement(String, String, String) - Method in class mgui.io.domestic.attributes.AttributeXMLHandler

endElement(String, String, String) - Method in class mgui.io.domestic.datasources.DataSourceXMLHandler

endElement(String, String, String) - Method in class mgui.io.domestic.maps.ColourMapXMLHandler

endElement(String, String, String) - Method in class mgui.io.domestic.maps.NameMapXMLHandler

endElement(String, String, String) - Method in class mgui.io.domestic.network.CorticalNetworkXMLHandler

endElement(String, String, String) - Method in class mgui.io.domestic.pipelines.PipelineProcessLibraryXMLHandler

endElement(String, String, String) - Method in class mgui.io.domestic.pipelines.PipelineXMLHandler

endElement(String, String, String) - Method in class mgui.io.domestic.pipelines.TaskXMLHandler

endElement(String, String, String) - Method in class mgui.io.domestic.shapes.xml.InterfaceShapeXMLHandler

endElement(String, String, String) - Method in class mgui.io.domestic.shapes.xml.SectionSet3DXMLHandler

endElement(String, String, String) - Method in class mgui.io.domestic.shapes.xml.ShapeModel3DXMLHandler

endElement(String, String, String) - Method in class mgui.io.domestic.shapes.xml.ShapeSet2DXMLHandler

endElement(String, String, String) - Method in class mgui.io.domestic.shapes.xml.ShapeSet3DXMLHandler

endElement(String, String, String) - Method in class mgui.io.domestic.views.View3DLoader.View3DXMLHandler

endElement(String, String, String) - Method in class mgui.io.foreign.camino.xml.CaminoProjectXMLHandler

endElement(String, String, String) - Method in class mgui.io.standard.gifti.xml.GiftiXMLHandler

EndianCorrectInputStream - Class in mgui.io.util

EndianCorrectInputStream extends DataInputStream; it will optionally flip bytes to read little endian data correctly.

EndianCorrectInputStream(InputStream, boolean) - Constructor for class mgui.io.util.EndianCorrectInputStream

Constructor for an InputStream.

EndianCorrectInputStream(String, boolean) - Constructor for class mgui.io.util.EndianCorrectInputStream

Constructor for a disk file.

EndianCorrectOutputStream - Class in mgui.io.util

EndianCorrectOutputStream extends DataOutputStream; it will optionally flip bytes to write little endian data correctly.

EndianCorrectOutputStream(OutputStream, boolean) - Constructor for class mgui.io.util.EndianCorrectOutputStream

Constructor for an OutputStream.

EndianCorrectOutputStream(String, boolean) - Constructor for class mgui.io.util.EndianCorrectOutputStream

Constructor for a disk file.

endSession() - Method in class mgui.interfaces.InterfaceWorkspace

energy - Variable in class mgui.geometry.mesh.EnergySphere.EnergyNode

EnergyNode(int, double) - Constructor for class mgui.geometry.mesh.EnergySphere.EnergyNode

EnergySphere - Class in mgui.geometry.mesh

EnergySphere(Mesh3D, NeighbourhoodMesh, Point3f, float) - Constructor for class mgui.geometry.mesh.EnergySphere

EnergySphere.EnergyNode - Class in mgui.geometry.mesh

enforce_extensions - Variable in class mgui.io.domestic.datasources.ExportDataTableExcelOptions

engine - Variable in class au.edu.unsw.cse.AnimationWidget

engine - Variable in class mgui.interfaces.models.InterfaceDynamicModelPanel

Engine - Interface in mgui.interfaces.util

Interface for all "engine" classes; i.e., instantiable classes which hold attributes and do work.

environment - Variable in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary

environment - Variable in class mgui.io.domestic.pipelines.PipelineProcessLibraryXMLHandler

environment - Variable in class mgui.models.environments.SimpleEnvironmentEvent

environment - Variable in class mgui.models.networks.AbstractNetworkModel

environment - Variable in class mgui.neuro.components.AbstractMotorNeuron

environment - Variable in class mgui.neuro.components.cortical.simple.SimpleCorticalOutput

Environment - Interface in mgui.interfaces

Interface to be implemented by all mgui environments.

environmentUpdated(DynamicModelEnvironmentEvent) - Method in interface mgui.models.dynamic.DynamicModelEnvironmentListener

environmentUpdated(DynamicModelEnvironmentEvent) - Method in class mgui.neuro.stats.SimpleStatistics

EOF() - Method in class mgui.datasources.DataRecordSet

equalFields(DataField, DataField) - Static method in class mgui.datasources.util.DataSourceFunctions

Compare fields for equality

equalFields(DataField, DataField, boolean) - Static method in class mgui.datasources.util.DataSourceFunctions

Compare fields for equality

equals(Object) - Method in class au.edu.unsw.cse.Edge3d

equals(Object) - Method in class mgui.numbers.MguiBoolean

equals(Object) - Method in class mgui.numbers.MguiDouble

equals(Object) - Method in class mgui.numbers.MguiFloat

equals(Object) - Method in class mgui.numbers.MguiInteger

equals(Object) - Method in class mgui.numbers.MguiLong

equals(Object) - Method in class mgui.numbers.MguiShort

erm() - Method in class mgui.io.foreign.minc.MincSurfaceOutDialog

error - Static variable in class mgui.geometry.util.GeometryFunctions

Acceptable margin of error

Errors - mgui.interfaces.logs.LoggingType

ErrorStreamListener(PipelineState) - Constructor for class mgui.pipelines.PipelineState.ErrorStreamListener

evaluate(double) - Method in class mgui.models.dynamic.functions.DecayFunction

evaluate(double) - Method in class mgui.models.dynamic.functions.Function

Evaluate function with a single parameter d

evaluate(double) - Method in class mgui.models.dynamic.functions.HardLimitFunction

evaluate(double) - Method in class mgui.models.dynamic.functions.SigmoidFunction

evaluate(double) - Method in class mgui.neuro.components.cortical.functions.BiexponentialFunction

evaluate(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction

evaluate(double[]) - Method in class mgui.models.dynamic.functions.DecayFunction

evaluate(double[]) - Method in class mgui.models.dynamic.functions.Function

Evaluate function with multiple parameters d

evaluate(double[]) - Method in class mgui.models.dynamic.functions.HardLimitFunction

evaluate(double[]) - Method in class mgui.models.dynamic.functions.SigmoidFunction

evaluate(double[]) - Method in class mgui.neuro.components.cortical.functions.BiexponentialFunction

Evaluates state as a biexponential function

evaluate(double[]) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction

Evaluate the ODEs for the given state: V - mean excitatory membrane potential Z - mean inhibitory membrane potential W - mean number of open K channels Returns the rates for these variables

evaluate(Context<Graph<AbstractGraphNode, AbstractGraphEdge>, AbstractGraphEdge>) - Method in class mgui.interfaces.graphs.util.GraphFunctions.ArrowVisibility

evaluate(Context<Graph<AbstractGraphNode, AbstractGraphEdge>, AbstractGraphEdge>) - Method in class mgui.interfaces.graphs.util.GraphFunctions.EdgeVisibility

evaluate(Context<Graph<AbstractGraphNode, AbstractGraphEdge>, AbstractGraphNode>) - Method in class mgui.interfaces.graphs.util.GraphFunctions.NodeVisibility

evaluate(MathExpressionOptions) - Static method in class mgui.interfaces.math.MathExpression

Evaluates a mathematical expression, returning an array of doubles, if n < 3, otherwise returns a set of embedded ArrayList<Double>s.

evaluate(MathExpressionOptions, ProgressUpdater) - Static method in class mgui.interfaces.math.MathExpression

Evaluates a mathematical expression, returning an array of doubles, if n < 3, otherwise returns a set of embedded ArrayList<Double>s.

evaluate(JEP, VariableObject) - Static method in class mgui.interfaces.math.MathExpression

evaluate_conditional(MathExpressionOptions) - Static method in class mgui.interfaces.math.MathExpression

Evaluates a conditional expression, returning an array of booleans.

evaluate_conditional(MathExpressionOptions, ProgressUpdater) - Static method in class mgui.interfaces.math.MathExpression

Evaluates a conditional expression, returning an array of booleans.

evaluate1b(JEP, VariableObject, int) - Static method in class mgui.interfaces.math.MathExpression

evaluate1b(JEP, VariableObject, int, ArrayList<String>, ProgressUpdater) - Static method in class mgui.interfaces.math.MathExpression

evaluate1d(JEP, VariableObject, int) - Static method in class mgui.interfaces.math.MathExpression

evaluate1d(JEP, VariableObject, int, ArrayList<String>, ProgressUpdater) - Static method in class mgui.interfaces.math.MathExpression

evaluate2b(JEP, VariableObject, int, int) - Static method in class mgui.interfaces.math.MathExpression

evaluate2b(JEP, VariableObject, int, int, ArrayList<String>, ProgressUpdater) - Static method in class mgui.interfaces.math.MathExpression

evaluate2d(JEP, VariableObject, int, int) - Static method in class mgui.interfaces.math.MathExpression

evaluate2d(JEP, VariableObject, int, int, ArrayList<String>, ProgressUpdater) - Static method in class mgui.interfaces.math.MathExpression

evaluate3b(JEP, VariableObject, int, int, int) - Static method in class mgui.interfaces.math.MathExpression

evaluate3b(JEP, VariableObject, int, int, int, ArrayList<String>, ProgressUpdater) - Static method in class mgui.interfaces.math.MathExpression

evaluate3d(JEP, VariableObject, int, int, int) - Static method in class mgui.interfaces.math.MathExpression

evaluate3d(JEP, VariableObject, int, int, int, ArrayList<String>, ProgressUpdater) - Static method in class mgui.interfaces.math.MathExpression

evaluateNd(JEP, VariableObject, int[]) - Static method in class mgui.interfaces.math.MathExpression

evaluateNd(JEP, VariableObject, int[], ArrayList<String>) - Static method in class mgui.interfaces.math.MathExpression

Evaluates an N-dimensional variable.

event_code - Variable in class mgui.datasources.DataFieldEvent

eventCode - Variable in class mgui.interfaces.graphs.InterfaceGraphEvent

eventCode - Variable in class mgui.interfaces.neuro.NeuroComponentEvent

eventCode - Variable in class mgui.models.networks.components.NetworkComponentEvent

eventCode - Variable in class mgui.models.networks.NetworkEvent

eventPoint - Variable in class mgui.interfaces.tools.ToolInputEvent

events - Variable in class mgui.neuro.components.AbstractNeuroComponent

eventType - Variable in class mgui.interfaces.shapes.util.ShapeEvent

eventType - Variable in class mgui.interfaces.tools.ToolInputEvent

eventType - Variable in class mgui.interfaces.trees.TreeEvent

eventVal - Variable in class mgui.interfaces.tools.ToolInputEvent

excel_format - Variable in class mgui.io.domestic.datasources.ExportDataTableExcelOptions

exception - Variable in class mgui.pipelines.PipelineState

exceptionEncountered() - Method in interface mgui.interfaces.pipelines.trees.ExceptionListener

exceptionEncountered() - Static method in class mgui.neuro.imaging.camino.CaminoFunctions

exceptionEncountered() - Method in interface mgui.neuro.imaging.camino.ExceptionListener

exceptionEncountered(Throwable) - Method in class mgui.pipelines.PipelineState

ExceptionListener - Interface in mgui.interfaces.pipelines.trees

ExceptionListener - Interface in mgui.neuro.imaging.camino

excludeToSelection - Variable in class mgui.interfaces.graphics.InterfaceGraphic

excludeToSelection - Variable in class mgui.interfaces.InterfaceDisplayPanel

excludeToSelection - Variable in class mgui.interfaces.shapes.ShapeModel3D

exclusionFilter - Variable in class mgui.interfaces.shapes.ShapeModel3D

execute(String[]) - Method in class mgui.command.CommandInstance

execute(String[]) - Method in class mgui.command.CommandInterpreter

Executes a process, similar to main, but runs as an instance, and returns the elapsed time in milliseconds.

executeEvent(DynamicModelEvent) - Method in class mgui.neuro.components.AbstractNeuroComponent

executeEvent(DynamicModelEvent) - Method in class mgui.neuro.components.compartments.AbstractCompartment

executeEvent(DynamicModelEvent) - Method in class mgui.neuro.components.compartments.CompartmentalComponent

executeEvent(DynamicModelEvent) - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalConnection

executeEvent(DynamicModelEvent) - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalOutput

executeEvent(DynamicModelEvent) - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion

executeEvent(DynamicModelEvent) - Method in class mgui.neuro.components.simple.SimpleAxon

executeEvent(DynamicModelEvent) - Method in class mgui.neuro.components.simple.SimpleDendrite

executeEvent(DynamicModelEvent) - Method in class mgui.neuro.components.simple.SimpleMotorNeuron

executeEvent(DynamicModelEvent) - Method in class mgui.neuro.components.simple.SimpleSoma

executeEvent(DynamicModelEvent) - Method in class mgui.neuro.components.simple.SimpleSynapse

executeEvents(double) - Method in interface mgui.models.dynamic.DynamicModelComponent

Executes any events in this component's event cue and clears the cue.

executeEvents(double) - Method in class mgui.neuro.components.AbstractNeuroComponent

executeModel(int) - Method in class mgui.models.dynamic.DynamicModelEngine

Executes the model for iterations.

executeStatement(String) - Method in class mgui.datasources.DataSource

Attempts to execute SQL_statement on this data source

executeUpdate(DataQuery) - Method in class mgui.datasources.DataSource

Attempts to execute the given update query.

executeUtility(String) - Method in class mgui.interfaces.projects.InterfaceProjectPanel

existing_shapes - Variable in class mgui.io.domestic.shapes.ShapeModel3DInputOptions

exists() - Method in class mgui.io.standard.nifti.Nifti1Dataset

Check if a valid dataset (header+data) exists.

existsDat() - Method in class mgui.io.standard.nifti.Nifti1Dataset

Check if a valid dataset data file exists.

existsHdr() - Method in class mgui.io.standard.nifti.Nifti1Dataset

Check if a valid dataset header file exists.

exit_on_termination - Variable in class mgui.command.CommandInstance

expandAllCategories() - Method in class mgui.interfaces.InterfacePanel

expandAllCategories() - Method in class mgui.interfaces.layouts.CategoryLayout

expandAllCategories() - Method in interface mgui.interfaces.layouts.CategoryObject

expandCategory(String) - Method in class mgui.interfaces.InterfacePanel

expandCategory(String) - Method in class mgui.interfaces.layouts.CategoryLayout

expandCategory(String) - Method in interface mgui.interfaces.layouts.CategoryObject

expanded_nodes - Variable in class mgui.interfaces.trees.InterfaceTreePanel

expandPipelineNode(InterfacePipeline) - Method in class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree

expandPipelineNode(InterfacePipeline) - Method in class mgui.interfaces.pipelines.trees.PipelineTree

Exponential - mgui.interfaces.plots.mgui.PlotMap2D.AxisType

ExportDataTableDialogBox - Class in mgui.io.domestic.datasources

Dialog box to specify options for exporting data from a data source to an external file format (e.g., delimited text).

ExportDataTableDialogBox() - Constructor for class mgui.io.domestic.datasources.ExportDataTableDialogBox

ExportDataTableDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.domestic.datasources.ExportDataTableDialogBox

ExportDataTableExcelOptions - Class in mgui.io.domestic.datasources

Options for exporting data from a DataSourceItem to a Microsoft Excel format file.

ExportDataTableExcelOptions() - Constructor for class mgui.io.domestic.datasources.ExportDataTableExcelOptions

ExportDataTableExcelOptions.Format - Enum in mgui.io.domestic.datasources

ExportDataTableExcelWriter - Class in mgui.io.domestic.datasources

Writes data from a data source DataItem to Microsoft Excel format.

ExportDataTableExcelWriter() - Constructor for class mgui.io.domestic.datasources.ExportDataTableExcelWriter

ExportDataTableOptions - Class in mgui.io.domestic.datasources

Options for exporting data from a data source to an external file format.

ExportDataTableOptions() - Constructor for class mgui.io.domestic.datasources.ExportDataTableOptions

ExportDataTableTextOptions - Class in mgui.io.domestic.datasources

Options for exporting data from a data source to a delimited text file.

ExportDataTableTextOptions() - Constructor for class mgui.io.domestic.datasources.ExportDataTableTextOptions

ExportDataTableTextWriter - Class in mgui.io.domestic.datasources

Writes data from a data source DataItem to a delimited text file.

ExportDataTableTextWriter() - Constructor for class mgui.io.domestic.datasources.ExportDataTableTextWriter

ExportDataTableWriter - Class in mgui.io.domestic.datasources

Abstract class for extension by writers which export data from a DataSourceItem to an external format.

ExportDataTableWriter() - Constructor for class mgui.io.domestic.datasources.ExportDataTableWriter

exportDone(JComponent, Transferable, int) - Method in class mgui.interfaces.pipelines.trees.PipelineTreeTransferHandler

ext - Static variable in class mgui.io.standard.xml.svg.SVGParser

EXT_KEY_SIZE - Static variable in class mgui.io.standard.nifti.Nifti1Dataset

extension - Variable in class mgui.io.domestic.shapes.SurfaceDataOutputOptions

extension - Variable in class mgui.io.standard.nifti.Nifti1Dataset

extensions - Variable in class mgui.interfaces.io.InterfaceIOType

extents - Variable in class mgui.io.standard.nifti.Nifti1Dataset

external_action_command - Variable in class mgui.interfaces.gui.FileButton

ExternalFileBinary - mgui.io.standard.gifti.GiftiOutputOptions.GiftiEncoding

extraColors(int[]) - Method in class au.edu.unsw.cse.Viewer

Remove any existing extra colors and replace with a new set

extractTar(File, File) - Static method in class mgui.io.util.IoFunctions

Extracts the tar archive tar_file into the directory target_dir.

extreme() - Method in class au.edu.unsw.cse.Edge3dPlus

return point farthest from support plane of this triangl

extreme() - Method in class au.edu.unsw.cse.Triangle3dPlus

return point farthest from support plane of this triangle

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