Index

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _
All Classes|All Packages

W

w - Variable in class au.edu.unsw.cse.View3dInfo

wait - Variable in class mgui.io.domestic.videos.ImageStackVideoOptions

Waiting - mgui.command.CommandFunctions.ProcessState

Warnings - mgui.interfaces.logs.LoggingType

WavefrontSurfaceLoader - Class in mgui.io.foreign.wavefront

Loader for a Wavefront OBJ format surface mesh object.

WavefrontSurfaceLoader() - Constructor for class mgui.io.foreign.wavefront.WavefrontSurfaceLoader

WavefrontSurfaceWriter - Class in mgui.io.foreign.wavefront

Writer for a Wavefront OBJ format surface mesh object.

WavefrontSurfaceWriter() - Constructor for class mgui.io.foreign.wavefront.WavefrontSurfaceWriter

weight - Variable in class mgui.interfaces.graphs.DefaultGraphEdge

weight_threshold - Variable in class mgui.interfaces.tools.shapes.ToolCreateMeshFromPolylinesOptions

WeightedGraphEdge - Interface in mgui.interfaces.graphs

Interface for a weighted graph edge

WeightedSynapse - Interface in mgui.neuro.components.types

wheight - Variable in class au.edu.unsw.cse.View3dInfo

whichNode(int) - Method in class mgui.geometry.Mesh3D.MeshFace3D

Returns the index in this face of the vertex at index (i.e., in the mesh).

width - Variable in class mgui.interfaces.gui.InterfaceComboBoxBak

width - Variable in class mgui.interfaces.shapes.SectionSet3DInt

width - Variable in class mgui.interfaces.shapes.util.Image3DTexture

width - Variable in class mgui.interfaces.shapes.util.TestTexture

width_ratio - Variable in class mgui.interfaces.shapes.util.Image2DTexture

WildcardFileFilter - Class in mgui.io.util

File filter allowing wildcard characters..

WildcardFileFilter(String[], String) - Constructor for class mgui.io.util.WildcardFileFilter

WildcardFileFilter(String, String) - Constructor for class mgui.io.util.WildcardFileFilter

window - Variable in class mgui.interfaces.graphics.video.Video

window - Variable in class mgui.interfaces.InterfaceDisplayPanel

window - Variable in class mgui.io.domestic.videos.VideoInputOptions

window - Variable in class mgui.io.domestic.videos.VideoOutputOptions

window_listeners - Variable in class mgui.interfaces.graphics.InterfaceGraphicWindow

window_mid - Variable in class mgui.image.util.WindowedColourModel

window_mid - Variable in class mgui.io.domestic.shapes.VolumeInputOptions

window_nodes - Variable in class mgui.interfaces.shapes.volume.Volume3DRenderer

window_width - Variable in class mgui.image.util.WindowedColourModel

window_width - Variable in class mgui.io.domestic.shapes.VolumeInputOptions

windowActivated(WindowEvent) - Method in class mgui.interfaces.frames.SessionFrame

windowActivated(WindowEvent) - Method in class mgui.interfaces.tools.shapes.util.RulerDialog

WindowAdded - mgui.interfaces.DisplayPanelEvent.EventType

WindowAdded - mgui.interfaces.SplitPanelEvent.EventType

windowClosed(WindowEvent) - Method in class mgui.interfaces.frames.SessionFrame

windowClosed(WindowEvent) - Method in class mgui.interfaces.tools.shapes.util.RulerDialog

windowClosing(WindowEvent) - Method in class mgui.interfaces.frames.SessionFrame

windowClosing(WindowEvent) - Method in class mgui.interfaces.tools.shapes.util.RulerDialog

WindowContainer - Interface in mgui.interfaces.graphics

Marker interface for all window containers

windowDeactivated(WindowEvent) - Method in class mgui.interfaces.frames.SessionFrame

windowDeactivated(WindowEvent) - Method in class mgui.interfaces.tools.shapes.util.RulerDialog

windowDeiconified(WindowEvent) - Method in class mgui.interfaces.frames.SessionFrame

windowDeiconified(WindowEvent) - Method in class mgui.interfaces.tools.shapes.util.RulerDialog

WindowedColourModel - Class in mgui.image.util

Colour model useful for representing medical images.

WindowedColourModel() - Constructor for class mgui.image.util.WindowedColourModel

Constructor produces a greyscale model of type DataBuffer.TYPE_DOUBLE.

WindowedColourModel(int) - Constructor for class mgui.image.util.WindowedColourModel

Constructor produces a greyscale model of type transferType.

WindowedColourModel(ColourMap, double, double, boolean, int) - Constructor for class mgui.image.util.WindowedColourModel

Constructor specifying min and max values only.

WindowedColourModel(ColourMap, double, double, double, double, boolean, int) - Constructor for class mgui.image.util.WindowedColourModel

Constructors specifying the full set of model parameters.

WindowEvent - Class in mgui.interfaces.graphics

Specifies an event on a graphics window (instance of InterfaceGraphic).

WindowEvent(InterfaceGraphicWindow) - Constructor for class mgui.interfaces.graphics.WindowEvent

WindowEvent(InterfaceGraphicWindow, WindowEvent.EventType) - Constructor for class mgui.interfaces.graphics.WindowEvent

WindowEvent.EventType - Enum in mgui.interfaces.graphics

windowIconified(WindowEvent) - Method in class mgui.interfaces.frames.SessionFrame

windowIconified(WindowEvent) - Method in class mgui.interfaces.tools.shapes.util.RulerDialog

WindowListener - Interface in mgui.interfaces.graphics

Specifies a listener on InterfaceGraphicWindow objects.

windowOpened(WindowEvent) - Method in class mgui.interfaces.frames.SessionFrame

windowOpened(WindowEvent) - Method in class mgui.interfaces.tools.shapes.util.RulerDialog

WindowRemoved - mgui.interfaces.DisplayPanelEvent.EventType

WindowRemoved - mgui.interfaces.SplitPanelEvent.EventType

WindowReplaced - mgui.interfaces.SplitPanelEvent.EventType

Windows - mgui.interfaces.InterfaceEnvironment.OsType

windowSourceChanged(WindowEvent) - Method in interface mgui.interfaces.graphics.WindowListener

windowSourceChanged(WindowEvent) - Method in class mgui.interfaces.InterfaceDisplayPanel

windowSourceChanged(WindowEvent) - Method in class mgui.interfaces.InterfaceSplitPanel

windowSourceChanged(WindowEvent) - Method in class mgui.interfaces.shapes.InterfaceSectionSetPanel

windowSourceChanged(WindowEvent) - Method in class mgui.interfaces.shapes.ShapeModel3D

WindowTypeChanged - mgui.interfaces.DisplayPanelEvent.EventType

windowUpdated(InterfaceGraphic) - Method in class mgui.interfaces.graphics.InterfaceGraphic2DTextBox

windowUpdated(InterfaceGraphic) - Method in class mgui.interfaces.graphics.InterfaceGraphicTextBox

windowUpdated(InterfaceGraphic) - Method in class mgui.interfaces.InterfaceSelectionPanel

windowUpdated(InterfaceGraphic) - Method in class mgui.interfaces.queries.InterfaceQueryPanel

windowUpdated(InterfaceGraphic) - Method in class mgui.interfaces.shapes.selection.InterfaceSelectionSet

windowUpdated(InterfaceGraphic) - Method in class mgui.interfaces.shapes.Text2DIntMouseCoords

windowUpdated(InterfaceGraphic<?>) - Method in interface mgui.interfaces.graphics.GraphicListener

Deprecated.

windowUpdated(WindowEvent) - Method in interface mgui.interfaces.graphics.WindowListener

windowUpdated(WindowEvent) - Method in class mgui.interfaces.InterfaceDisplayPanel

windowUpdated(WindowEvent) - Method in class mgui.interfaces.InterfaceSplitPanel

windowUpdated(WindowEvent) - Method in class mgui.interfaces.shapes.InterfaceSectionSetPanel

windowUpdated(WindowEvent) - Method in class mgui.interfaces.shapes.ShapeModel3D

wm_contains - Variable in class mgui.interfaces.neuro.CorticalThicknessOptions

wm_mesh - Variable in class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt

working_selection - Variable in class mgui.interfaces.shapes.ShapeModel3D

workspace - Variable in class mgui.datasources.DataSource

workspace - Variable in class mgui.interfaces.InterfaceDisplayPanel

WorkspaceOutputOptions - Class in mgui.io.domestic

Specifies options for writing a workspace (i.e., an instance of InterfaceWorkspace) to XML.

WorkspaceOutputOptions() - Constructor for class mgui.io.domestic.WorkspaceOutputOptions

WorkspaceOutputOptions(XMLObject.XMLType) - Constructor for class mgui.io.domestic.WorkspaceOutputOptions

WorkspaceWriter - Class in mgui.io.domestic

Writes a workspace (i.e., an instance of InterfaceWorkspace) to XML.

WorkspaceWriter() - Constructor for class mgui.io.domestic.WorkspaceWriter

WorkspaceWriter(File) - Constructor for class mgui.io.domestic.WorkspaceWriter

write() - Method in class mgui.io.FileWriter

Write the object to file subject to the given set of options.

write(int) - Method in class mgui.io.util.ParallelOutputStream

write(DataSourceDriver) - Method in class mgui.io.domestic.datasources.DataSourceDriverWriter

write(ProgressUpdater) - Method in class mgui.io.FileWriter

write(InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.domestic.datasources.DataSourceDriverWriter

write(InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.domestic.datasources.DataSourceWriter

write(InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.domestic.datasources.ExportDataTableWriter

write(InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.domestic.graphs.GraphFileWriter

write(InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.domestic.maps.ContinuousColourMapWriter

write(InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.domestic.maps.DiscreteColourMapWriter

write(InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.domestic.maps.NameMapWriter

write(InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.domestic.pipelines.PipelineProcessLibraryWriter

write(InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.domestic.pipelines.PipelineWriter

write(InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.domestic.shapes.Graph3DWriter

write(InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.domestic.shapes.ShapeModel3DWriter

write(InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.domestic.shapes.ShapeXmlWriter

write(InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.domestic.shapes.SurfaceDataFileWriter

write(InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.domestic.shapes.SurfaceFileWriter

write(InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.domestic.shapes.VolumeFileWriter

write(InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.domestic.variables.DefaultMatrixFileWriter

write(InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.domestic.videos.VideoWriter

write(InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.domestic.views.View3DWriter

write(InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.domestic.WorkspaceWriter

write(InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.FileWriter

Writes this object according to the given options.

write(InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.foreign.camino.CaminoPipelineWriter

write(InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.foreign.camino.CaminoProjectWriter

write(InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.foreign.caret.CaretAreaColourWriter

write(InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.foreign.caret.CaretPaintWriter

write(InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.foreign.caret.CaretSurfaceWriter

write_alpha - Variable in class mgui.io.domestic.maps.DiscreteColourMapOutOptions

write_columns - Variable in class mgui.io.standard.gifti.GiftiOutputOptions

writeAscii(Mesh3DInt, ProgressUpdater) - Method in class mgui.io.domestic.printing.StlWriter

Writes mesh as an ASCII-format STL file.

writeAsciiArray(BufferedWriter, ArrayList<MguiNumber>, int) - Method in class mgui.io.standard.gifti.GiftiSurfaceWriter

Write vertex data as ASCII data to an XML writer; formats to decimals decimal places.

writeAsciiColours(BufferedWriter, VertexDataColumn, int, boolean) - Method in class mgui.io.standard.gifti.GiftiSurfaceWriter

Write coordinates as ASCII data to an XML writer; formats to decimals decimal places.

writeAsciiCoords(BufferedWriter, Mesh3D, int) - Method in class mgui.io.standard.gifti.GiftiSurfaceWriter

Write coordinates as ASCII data to an XML writer; formats to decimals decimal places.

writeAsciiCoords(Writer, String, int) - Method in class mgui.geometry.Shape3D

Write coordinates as ASCII data to an XML writer; formats to decimals decimal places.

writeAsciiData(Writer, int, int, int) - Method in class mgui.interfaces.shapes.VertexDataColumn

Writes this vertex column's data as Ascii

writeAsciiFaces(BufferedWriter, Mesh3D) - Method in class mgui.io.standard.gifti.GiftiSurfaceWriter

Write faces as ASCII data to an XML writer; formats to decimals decimal places.

writeAsciiFaces(Writer, String) - Method in class mgui.geometry.Mesh3D

Write faces as ASCII data to an XML writer; formats to decimals decimal places.

writeBinary(Mesh3DInt, ProgressUpdater) - Method in class mgui.io.domestic.printing.StlWriter

Writes mesh as an binary-format STL file.

writeBinaryArray(BufferedWriter, ArrayList<MguiNumber>, boolean, ByteOrder) - Method in class mgui.io.standard.gifti.GiftiSurfaceWriter

writeBinaryColours(BufferedWriter, VertexDataColumn, boolean, ByteOrder, boolean) - Method in class mgui.io.standard.gifti.GiftiSurfaceWriter

writeBinaryCoords(BufferedWriter, Mesh3D, boolean, ByteOrder) - Method in class mgui.io.standard.gifti.GiftiSurfaceWriter

Write mesh coordinates as Base64 encoded binary data to an XML writer, in row major order.

writeBinaryCoords(Writer, int) - Method in class mgui.geometry.Shape3D

Write mesh coordinates as Base64 encoded binary data to an XML writer, in row major order.

writeBinaryData(Writer, int, int) - Method in class mgui.interfaces.shapes.VertexDataColumn

Writes this vertex column's data as Base64 binary.

writeBinaryFaces(BufferedWriter, Mesh3D, boolean, ByteOrder) - Method in class mgui.io.standard.gifti.GiftiSurfaceWriter

Write mesh faces as Base64 encoded binary data to an XML writer, in row major order.

writeBinaryFaces(Writer, int) - Method in class mgui.geometry.Mesh3D

Write mesh faces as Base64 encoded binary data to an XML writer, in row major order.

writeBinarySurface(Mesh3DInt, ProgressUpdater) - Method in class mgui.io.foreign.caret.CaretSurfaceWriter

writeColourMap(DiscreteColourMap) - Method in class mgui.io.foreign.caret.CaretAreaColourWriter

Writes colour_map to file.

writeCoords(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.geometry.Grid3D

writeCoords(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.geometry.Plane3D

writeCoords(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.geometry.Shape3D

Writes this shape's coordinates, according the parameters in options

writeData(byte[]) - Method in class mgui.io.standard.nifti.Nifti1Dataset

Write a byte array of data to disk, starting at vox_offset, beginning of image data.

writeDataItem(DataSourceItem, ProgressUpdater) - Method in class mgui.io.domestic.datasources.ExportDataTableExcelWriter

writeDataItem(DataSourceItem, ProgressUpdater) - Method in class mgui.io.domestic.datasources.ExportDataTableTextWriter

writeDataItem(DataSourceItem, ProgressUpdater) - Method in class mgui.io.domestic.datasources.ExportDataTableWriter

Writes a DataSourceItem to an external format, using the current settings of this writer.

writeDataSource(DataSource) - Method in class mgui.io.domestic.datasources.DataSourceWriter

Writes this data source to a text file.

writeDataSourceAsXml(DataSource) - Method in class mgui.io.domestic.datasources.DataSourceWriter

writeDoubleCorrect(double) - Method in class mgui.io.util.EndianCorrectOutputStream

writeDoubleCorrect will write a double to the stream

writeFloatCorrect(float) - Method in class mgui.io.util.EndianCorrectOutputStream

writeFloatCorrect will write a float to the stream

writeFromOffscreenBufferBlocking(ImageStackVideoOptions, ProgressUpdater) - Method in class mgui.io.domestic.videos.ImageStackVideoWriter

writeFromScreenshotsBlocking(ImageStackVideoOptions, ProgressUpdater) - Method in class mgui.io.domestic.videos.ImageStackVideoWriter

writeFullXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.shapes.Volume3DInt

writeGraph(InterfaceAbstractGraph, ProgressUpdater) - Method in class mgui.io.domestic.graphs.GraphFileWriter

Writes this graph to file using its domestic XML representation.

writeGraph(Graph3DInt, ProgressUpdater) - Method in class mgui.io.domestic.shapes.Graph3DWriter

Writes this Graph3DInt to file using its domestic XML representation.

writeHeader() - Method in class mgui.io.standard.nifti.Nifti1Dataset

Write header information to disk file

writeHeader() - Method in class mgui.io.standard.nifti.NiftiMetadata

writeHeader(SurfaceDataOutputOptions, String) - Method in class mgui.io.foreign.caret.CaretPaintWriter

writeHeader(NiftiMetadata) - Method in class mgui.io.standard.nifti.NiftiVolumeLoader

writeImageToPng(BufferedImage, File) - Static method in class mgui.io.imaging.ImagingIOFunctions

Writes the given image to a png-format image file.

writeIntCorrect(int) - Method in class mgui.io.util.EndianCorrectOutputStream

writeIntCorrect will write an int to the stream

writeLibrary(PipelineProcessLibrary, ProgressUpdater) - Method in class mgui.io.domestic.pipelines.PipelineProcessLibraryWriter

writeLine(int, int, double) - Method in class mgui.io.domestic.variables.DefaultMatrixFileWriter

writeLineAsciiSparse(int, int, double) - Method in class mgui.io.domestic.variables.DefaultMatrixFileWriter

writeLineBinarySparse(int, int, double) - Method in class mgui.io.domestic.variables.DefaultMatrixFileWriter

writeLongCorrect(long) - Method in class mgui.io.util.EndianCorrectOutputStream

writeLongCorrect will write a long to the stream

writeMap(ContinuousColourMap) - Method in class mgui.io.domestic.maps.ContinuousColourMapWriter

writeMap(ContinuousColourMap, String) - Method in class mgui.io.domestic.maps.ContinuousColourMapWriter

writeMap(DiscreteColourMap) - Method in class mgui.io.domestic.maps.DiscreteColourMapWriter

writeMap(DiscreteColourMap, boolean) - Method in class mgui.io.domestic.maps.DiscreteColourMapWriter

writeMap(DiscreteColourMap, boolean) - Method in class mgui.io.foreign.mricro.MricroLutWriter

writeMatrix(Matrix) - Method in class mgui.io.domestic.variables.MatrixFileWriter

writeMatrix(Matrix, ProgressUpdater) - Method in class mgui.io.domestic.variables.DefaultMatrixFileWriter

writeMatrix(Matrix, ProgressUpdater) - Method in class mgui.io.domestic.variables.MatrixFileWriter

writeModel(ShapeModel3DOutputOptions, ProgressUpdater) - Method in class mgui.io.domestic.shapes.ShapeModel3DWriter

writeNameMap(NameMap, String) - Method in class mgui.io.domestic.maps.NameMapWriter

writeObject(XMLOutputOptions, ProgressUpdater) - Method in class mgui.io.standard.xml.XMLWriter

Writes an XML object given options.

writeOrderedChar(int) - Method in class mgui.io.util.ByteOrderedFile

writeOrderedDouble(double) - Method in class mgui.io.util.ByteOrderedFile

writeOrderedFloat(float) - Method in class mgui.io.util.ByteOrderedFile

writeOrderedInt(int) - Method in class mgui.io.util.ByteOrderedFile

writeOrderedLong(long) - Method in class mgui.io.util.ByteOrderedFile

writeOrderedShort(int) - Method in class mgui.io.util.ByteOrderedFile

writePipeline(InterfacePipeline) - Method in class mgui.io.domestic.pipelines.PipelineWriter

Writes a pipeline to the current file.

writePipelines(ArrayList<InterfacePipeline>) - Method in class mgui.io.domestic.pipelines.PipelineWriter

Writes multiple pipelines to the current file.

writePipelineXML(InterfacePipeline) - Method in class mgui.io.foreign.camino.CaminoPipelineWriter

writeProjectXML(CaminoProject) - Method in class mgui.io.foreign.camino.CaminoProjectWriter

writer - Variable in class mgui.datasources.DataSourceDriver

writer - Variable in class mgui.io.standard.xml.XMLOutputOptions

writer_options - Variable in class mgui.interfaces.shapes.InterfaceShape

writeRaysToFile(ArrayList<SampleRay>, String, int) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions

Writes rays to two tab-delimited text files, one with its vectors:

writeRayToFile(ArrayList<Double>, String) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions

writeShape(InterfaceShape, ProgressUpdater) - Method in class mgui.io.domestic.shapes.InterfaceShapeWriter

Writes this shape to file using its domestic XML representation.

writeShape(InterfaceShape, ProgressUpdater) - Method in class mgui.io.domestic.shapes.ShapeXmlWriter

writeShapeToXML(int, Writer, ProgressUpdater, XMLObject.XMLType) - Method in class mgui.interfaces.shapes.Shape2DInt

writeShortCorrect(short) - Method in class mgui.io.util.EndianCorrectOutputStream

writeShortCorrect will write a short to the stream

writeSnapshotToFile(File) - Method in class mgui.interfaces.graphics.InterfaceGraphic

Writes a snapshot of this window to file as a Portable Network Graphics (png) image.

writeSnapshotToFile(File) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D

Temp screenshot while off screen rendering doesn't work...

writeSnapshotToFile(File) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay

writeSurface(Mesh3DInt) - Method in class mgui.io.domestic.shapes.SurfaceFileWriter

Write mesh with this FileWriter.

writeSurface(Mesh3DInt) - Method in class mgui.io.foreign.minc.MincSurfaceWriter

writeSurface(Mesh3DInt, InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.domestic.printing.StlWriter

writeSurface(Mesh3DInt, InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.domestic.shapes.Mesh3DWriter

writeSurface(Mesh3DInt, InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.domestic.shapes.SurfaceFileWriter

Write mesh with this FileWriter.

writeSurface(Mesh3DInt, InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.foreign.caret.CaretSurfaceWriter

writeSurface(Mesh3DInt, InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.foreign.freesurfer.FreesurferSurfaceWriter

writeSurface(Mesh3DInt, InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.foreign.minc.MincSurfaceWriter

writeSurface(Mesh3DInt, InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.foreign.wavefront.WavefrontSurfaceWriter

writeSurface(Mesh3DInt, InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.standard.gifti.GiftiSurfaceWriter

writeSurfaceAscii(Mesh3DInt, InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.foreign.freesurfer.FreesurferSurfaceWriter

writeSurfaceBlocking(Mesh3DInt, ProgressUpdater) - Method in class mgui.io.domestic.shapes.Mesh3DWriter

writeSurfaces(ArrayList<Mesh3DInt>) - Method in class mgui.io.domestic.shapes.SurfaceFileWriter

Write meshes with this FileWriter.

writeSurfaces(ArrayList<Mesh3DInt>, InterfaceIOOptions, ProgressUpdater) - Method in class mgui.io.domestic.shapes.SurfaceFileWriter

Write meshes with this FileWriter.

writeToFile(BufferedImage, File) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D

writeToFile(File) - Method in class mgui.io.standard.nifti.NiftiMetadata

writeToFileBuffer(File) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D

Writes this window to a png image file.

writeToImage(File) - Method in class mgui.interfaces.maps.ContinuousColourBar

Writes this colour bar to an image file.

writeToImage(File, int, int) - Method in class mgui.interfaces.maps.ContinuousColourBar

Writes this colour bar to an image file.

writeToXML(BufferedWriter) - Static method in class mgui.neuro.imaging.camino.CaminoEnvironment

writeToXML(File, XMLObject) - Static method in class mgui.interfaces.xml.XMLFunctions

Writes an XML object to file.

writeValues(ArrayList<MguiNumber>) - Method in class mgui.io.domestic.shapes.SurfaceDataFileWriter

Writes the set of values to the data file.

writeValues(ArrayList<MguiNumber>, ProgressUpdater) - Method in class mgui.io.domestic.shapes.SurfaceDataFileWriter

writeValues(ArrayList<MguiNumber>, ProgressUpdater) - Method in class mgui.io.foreign.caret.CaretPaintWriter

Overridden from SurfaceDataFileWriter.

writeValues(ArrayList<MguiNumber>, ProgressUpdater) - Method in class mgui.io.foreign.minc.MincSurfaceDataWriter

writeValues(SurfaceDataOutputOptions, String, ProgressUpdater) - Method in class mgui.io.foreign.caret.CaretPaintWriter

writeVertexColours(BufferedWriter, VertexDataColumn, GiftiOutputOptions, boolean) - Method in class mgui.io.standard.gifti.GiftiSurfaceWriter

writeVertexData(BufferedWriter, VertexDataColumn, GiftiOutputOptions) - Method in class mgui.io.standard.gifti.GiftiSurfaceWriter

writeVideo(VideoOutputOptions, ProgressUpdater) - Method in class mgui.io.domestic.videos.ImageStackVideoWriter

writeVideo(VideoOutputOptions, ProgressUpdater) - Method in class mgui.io.domestic.videos.VideoWriter

writeVideo3D(ImageStackVideoOptions, ProgressUpdater) - Method in class mgui.io.domestic.videos.ImageStackVideoWriter

writeVol(double[][][], short) - Method in class mgui.io.standard.nifti.Nifti1Dataset

Write one 3D double array to disk.

writeVolume(Volume3DInt) - Method in class mgui.io.domestic.shapes.VolumeFileWriter

Writes volume to file using default parameters.

writeVolume(Volume3DInt, String, NiftiMetadata) - Method in class mgui.io.standard.nifti.NiftiVolumeWriter

Writes volume to the current file, using the specified column and NiftiMetadata.

writeVolume(Volume3DInt, VolumeOutputOptions) - Method in class mgui.io.domestic.shapes.VolumeFileWriter

Writes a volume to file using the specified options.

writeVolume(Volume3DInt, VolumeOutputOptions) - Method in class mgui.io.standard.nifti.NiftiVolumeWriter

writeVolume(Volume3DInt, NiftiMetadata) - Method in class mgui.io.standard.nifti.NiftiVolumeWriter

Writes volume to the current file, using the current column and NiftiMetadata.

writeXML(int, Writer) - Method in class mgui.datasources.DataConnection

writeXML(int, Writer) - Method in class mgui.datasources.DataField

writeXML(int, Writer) - Method in class mgui.datasources.DataQuery

writeXML(int, Writer) - Method in class mgui.datasources.DataSource

writeXML(int, Writer) - Method in class mgui.datasources.DataTable

writeXML(int, Writer) - Method in class mgui.datasources.DataTableSet

writeXML(int, Writer) - Method in class mgui.geometry.Shape2D

writeXML(int, Writer) - Method in class mgui.geometry.Shape3D

writeXML(int, Writer) - Method in class mgui.image.util.WindowedColourModel

writeXML(int, Writer) - Method in class mgui.interfaces.attributes.Attribute

writeXML(int, Writer) - Method in class mgui.interfaces.attributes.AttributeList

writeXML(int, Writer) - Method in class mgui.interfaces.graphics.InterfaceGraphic

writeXML(int, Writer) - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow

writeXML(int, Writer) - Method in class mgui.interfaces.graphics.video.Video

writeXML(int, Writer) - Method in class mgui.interfaces.graphics.video.VideoTask

writeXML(int, Writer) - Method in class mgui.interfaces.graphics.View3D

writeXML(int, Writer) - Method in class mgui.interfaces.graphs.AbstractGraphEdge

writeXML(int, Writer) - Method in class mgui.interfaces.graphs.AbstractGraphNode

writeXML(int, Writer) - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph

writeXML(int, Writer) - Method in class mgui.interfaces.InterfaceDisplayPanel

writeXML(int, Writer) - Method in class mgui.interfaces.InterfaceWorkspace

writeXML(int, Writer) - Method in class mgui.interfaces.layouts.LayoutItem

writeXML(int, Writer) - Method in class mgui.interfaces.maps.Camera3D

writeXML(int, Writer) - Method in class mgui.interfaces.maps.ColourMap

writeXML(int, Writer) - Method in class mgui.interfaces.maps.Map2D

writeXML(int, Writer) - Method in class mgui.interfaces.maps.Map3D

writeXML(int, Writer) - Method in class mgui.interfaces.maps.NameMap

writeXML(int, Writer) - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary

writeXML(int, Writer) - Method in class mgui.interfaces.projects.InterfaceProject

writeXML(int, Writer) - Method in class mgui.interfaces.projects.ProjectDirectory

writeXML(int, Writer) - Method in class mgui.interfaces.projects.ProjectInstance

writeXML(int, Writer) - Method in class mgui.interfaces.shapes.InterfaceShape

writeXML(int, Writer) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet

writeXML(int, Writer) - Method in class mgui.interfaces.shapes.ShapeModel3D

writeXML(int, Writer) - Method in class mgui.interfaces.shapes.VertexDataColumn

writeXML(int, Writer) - Method in class mgui.interfaces.tables.InterfaceDataTable

writeXML(int, Writer) - Method in class mgui.interfaces.variables.VariableInt

writeXML(int, Writer) - Method in interface mgui.interfaces.xml.XMLObject

Writes the XML representation of this object to file.

writeXML(int, Writer) - Method in class mgui.io.InterfaceIOOptions

writeXML(int, Writer) - Method in class mgui.neuro.imaging.camino.CaminoProject

writeXML(int, Writer) - Method in class mgui.numbers.MguiBoolean

writeXML(int, Writer) - Method in class mgui.numbers.MguiDouble

writeXML(int, Writer) - Method in class mgui.numbers.MguiFloat

writeXML(int, Writer) - Method in class mgui.numbers.MguiInteger

writeXML(int, Writer) - Method in class mgui.numbers.MguiLong

writeXML(int, Writer) - Method in class mgui.numbers.MguiShort

writeXML(int, Writer) - Method in class mgui.pipelines.PipelineProcess

writeXML(int, Writer) - Method in class mgui.pipelines.PipelineTask

writeXML(int, Writer) - Method in class mgui.util.Colour

writeXML(int, Writer, InterfaceProgressBar) - Method in class mgui.geometry.PointSet3D

writeXML(int, Writer, InterfaceProgressBar) - Method in class mgui.geometry.Polygon2D

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.datasources.DataConnection

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.datasources.DataField

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.datasources.DataQuery

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.datasources.DataSource

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.datasources.DataTable

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.datasources.DataTableSet

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.geometry.Shape2D

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.geometry.Shape3D

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.image.util.WindowedColourModel

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.interfaces.attributes.Attribute

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.interfaces.attributes.AttributeList

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.interfaces.console.InterfaceConsoleDisplay

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.interfaces.graphics.InterfaceGraphic

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.interfaces.graphics.video.Video

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.interfaces.graphics.video.VideoTask

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.interfaces.graphics.View3D

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.interfaces.graphs.AbstractGraphEdge

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.interfaces.graphs.AbstractGraphNode

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.interfaces.InterfaceDisplayPanel

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.interfaces.InterfaceWorkspace

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.interfaces.layouts.LayoutItem

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.interfaces.maps.Camera3D

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.interfaces.maps.ColourMap

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.interfaces.maps.Map2D

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.interfaces.maps.Map3D

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.interfaces.maps.NameMap

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.interfaces.projects.InterfaceProject

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.interfaces.projects.ProjectDirectory

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.interfaces.projects.ProjectInstance

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.interfaces.shapes.InterfaceShape

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.interfaces.shapes.ShapeModel3D

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.interfaces.shapes.VertexDataColumn

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.interfaces.variables.VariableInt

writeXML(int, Writer, ProgressUpdater) - Method in interface mgui.interfaces.xml.XMLObject

Writes the XML representation of this object to file, as XMLType.Normal.

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.io.InterfaceIOOptions

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.neuro.imaging.camino.CaminoProject

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.numbers.MguiBoolean

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.numbers.MguiDouble

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.numbers.MguiFloat

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.numbers.MguiInteger

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.numbers.MguiLong

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.numbers.MguiShort

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.pipelines.NativeProcess

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.pipelines.PipelineProcess

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.pipelines.PipelineTask

writeXML(int, Writer, ProgressUpdater) - Method in class mgui.util.Colour

writeXML(int, Writer, XMLObject.XMLType, InterfaceProgressBar) - Method in class mgui.interfaces.shapes.ShapeSet2DInt

writeXML(int, Writer, XMLObject.XMLType, XMLObject.XMLEncoding, ProgressUpdater) - Method in class mgui.interfaces.attributes.Attribute

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.datasources.DataConnection

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.datasources.DataField

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.datasources.DataQuery

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.datasources.DataSource

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.datasources.DataTable

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.datasources.DataTableSet

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.geometry.Graph3D

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.geometry.Grid3D

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.geometry.Mesh3D

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.geometry.Plane3D

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.geometry.Shape2D

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.geometry.Shape3D

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.image.util.WindowedColourModel

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.attributes.Attribute

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.attributes.AttributeList

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.console.InterfaceConsoleDisplay

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.graphics.video.Video

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.graphics.video.VideoTask

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.graphics.View3D

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.graphs.AbstractGraphEdge

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.graphs.AbstractGraphNode

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.InterfaceDisplayPanel

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.InterfaceSplitPanel

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.InterfaceWorkspace

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.layouts.InterfaceLayoutWindow

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.layouts.LayoutItem

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.maps.Camera3D

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.maps.ColourMap

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.maps.Map2D

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.maps.Map3D

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.maps.NameMap

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.plots.InterfacePlotDisplay

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.projects.InterfaceProject

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.projects.ProjectDirectory

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.projects.ProjectInstance

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.shapes.InterfaceShape

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.shapes.SectionSet3DInt

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.shapes.Shape2DInt

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.shapes.ShapeModel3D

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.shapes.ShapeSet3DInt

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.shapes.VertexDataColumn

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.shapes.Volume3DInt

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.tables.InterfaceDataTable

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.variables.VariableInt

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in interface mgui.interfaces.xml.XMLObject

Writes the XML representation of this object to file.

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.io.InterfaceIOOptions

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.neuro.graphs.CorticalNetworkGraphNode

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.neuro.imaging.camino.CaminoProject

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.numbers.MguiBoolean

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.numbers.MguiDouble

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.numbers.MguiFloat

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.numbers.MguiInteger

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.numbers.MguiLong

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.numbers.MguiShort

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.pipelines.InterfacePipeline

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.pipelines.PipelineProcess

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.pipelines.PipelineTask

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.util.Colour

writeXML(int, Writer, XMLOutputOptions, ProgressUpdater, File) - Method in class mgui.interfaces.shapes.ShapeModel3D

Writes this model to an XML writer, setting the specified root directory.

writeXMLFull(int, Writer, XMLOutputOptions, ProgressUpdater) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn

writeXMLObject(XMLOutputOptions, ProgressUpdater) - Method in class mgui.io.standard.xml.XMLWriter

Write the object specified in options.

WunilDataset - Class in mgui.io.foreign.wunil

Extension of Nifti1Dataset to allow data to be read from the WUNIL *.ifh format (used with Caret).

WunilDataset() - Constructor for class mgui.io.foreign.wunil.WunilDataset

WunilDataset(String) - Constructor for class mgui.io.foreign.wunil.WunilDataset

WunilVolumeLoader - Class in mgui.io.foreign.wunil

Loader to load WUNIL IDF format volumes (University of Washington in St.

WunilVolumeLoader() - Constructor for class mgui.io.foreign.wunil.WunilVolumeLoader

WunilVolumeLoader(File) - Constructor for class mgui.io.foreign.wunil.WunilVolumeLoader

wwidth - Variable in class au.edu.unsw.cse.View3dInfo

wx - Variable in class au.edu.unsw.cse.View3dInfo

wy - Variable in class au.edu.unsw.cse.View3dInfo

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