S-Index

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S

S - mgui.geometry.volume.VolumeFunctions.VolumeAxis
s_init() - Method in class mgui.io.domestic.shapes.SurfaceOutputDialogBox
s_size - Variable in class mgui.geometry.Grid3D
sample_rate - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
sampleDataType - Variable in class mgui.interfaces.shapes.dynamic.Volume4DInt
sampleFromVolume(Volume3DInt) - Method in class mgui.interfaces.shapes.Volume3DInt: Samples sample_volume where its geometric bounds cross the bounds of this volume.
sampleFromVolume(Volume3DInt, double) - Method in class mgui.interfaces.shapes.Volume3DInt: Samples sample_volume where its geometric bounds cross the bounds of this volume.
sampleFromVolume(Volume3DInt, String, String) - Method in class mgui.interfaces.shapes.Volume3DInt: Samples sample_volume where its geometric bounds cross the bounds of this volume.
sampleFromVolume(Volume3DInt, String, String, double) - Method in class mgui.interfaces.shapes.Volume3DInt: Samples sample_volume where its geometric bounds cross the bounds of this volume.
sampleGrid() - Method in class mgui.io.foreign.vol.Volume3DInputStream
sampleGrid(int) - Method in class mgui.io.foreign.vol.Volume3DInputStream
SampleRay - Class in mgui.geometry.neuro.mesh: Represents a ray vector and regular samples along its trajectory (at a frequency of n / length).
SampleRay(SampleRay) - Constructor for class mgui.geometry.neuro.mesh.SampleRay
SampleRay(Vector3D) - Constructor for class mgui.geometry.neuro.mesh.SampleRay
SampleRay(Vector3D, ArrayList<Double>) - Constructor for class mgui.geometry.neuro.mesh.SampleRay
samples - Variable in class mgui.geometry.neuro.mesh.SampleRay
sAxis - Variable in class mgui.geometry.Box3D
scalar_name - Variable in class mgui.io.foreign.trackvis.TrackVisTractHeader
scale - Variable in class mgui.image.util.WindowedColourModel
scale - Variable in class mgui.interfaces.shapes.util.Point2DShape
scale - Variable in class mgui.io.domestic.shapes.VolumeInputOptions
scale(double) - Method in class au.edu.unsw.cse.Point3d
scale(double) - Method in class au.edu.unsw.cse.Quaternion
scale(double, double, double) - Method in class au.edu.unsw.cse.Point3d
scale(double, double, Point2D) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
ScaledUnit - Class in mgui.util: Specifies a simple unit, scaled by a constant factor with respect to a base unit.
ScaledUnit(String, String, double) - Constructor for class mgui.util.ScaledUnit
scaleToGraphExtents(InterfaceGraphDisplay) - Static method in class mgui.interfaces.graphs.util.GraphFunctions: Determines the current extents of this display's graph and scales/translates to it
ScalpAndSkullModelOptions - Class in mgui.geometry.neuro.mesh: Parameters for skull and scalp surface approximation.
ScalpAndSkullModelOptions() - Constructor for class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
scanFile(File) - Method in class mgui.io.domestic.datasources.ImportDataTableDialogBox
scanNodes - Variable in class mgui.interfaces.shapes.Volume2DInt
scanTables() - Method in class mgui.io.domestic.datasources.ImportDataTableDialogBox
scene - Variable in class mgui.interfaces.shapes.X3DScene3DInt
scene_group - Variable in class mgui.interfaces.shapes.PolygonSet3DInt
scene_group - Variable in class mgui.interfaces.shapes.VectorSet3DInt
scene_node - Variable in class mgui.interfaces.shapes.Vector3DInt
scene3DNodes - Variable in class mgui.interfaces.shapes.SectionSet3DInt
scene3DObject - Variable in class mgui.interfaces.shapes.Shape3DInt
SceneChanged - mgui.interfaces.events.CameraEvent.EventType
sceneNode - Variable in class mgui.interfaces.shapes.Shape2DInt
sceneNode - Variable in class mgui.interfaces.shapes.Shape3DInt
scl_inter - Variable in class mgui.io.standard.nifti.Nifti1Dataset
scl_slope - Variable in class mgui.io.standard.nifti.Nifti1Dataset
scrColumns - Variable in class mgui.io.domestic.maps.NameMapOutDialogBox
scrColumns - Variable in class mgui.io.domestic.shapes.PointSet3DDataInputDialogBox
scrColumns - Variable in class mgui.io.domestic.shapes.ShapeInputDialogBox
scrColumns - Variable in class mgui.io.domestic.shapes.SurfaceDataInputDialogBox
scrColumns - Variable in class mgui.io.domestic.shapes.SurfaceDataOutputDialogBox
scrColumns - Variable in class mgui.io.domestic.shapes.SurfaceInputDialogBox
ScreenCapture - mgui.interfaces.InterfaceEnvironment.Snapshot3DMode
ScreenSizeCalculator - Class in mgui.interfaces.shapes.util
ScreenSizeCalculator() - Constructor for class mgui.interfaces.shapes.util.ScreenSizeCalculator
screenStartPt - Variable in class mgui.interfaces.tools.shapes.ToolCreateEllipse2D
screenStartPt - Variable in class mgui.interfaces.tools.shapes.ToolCreatePolygon2D
scroll - Variable in class au.edu.unsw.cse.AnimationWidget
scroll_pane - Variable in class mgui.interfaces.layouts.InterfaceLayoutFrame
scrollPane - Variable in class mgui.interfaces.attributes.InterfaceAttributePanel
scrollPane - Variable in class mgui.interfaces.graphs.InterfaceGraphDisplay
scrollPane - Variable in class mgui.interfaces.InterfaceComboPanel
scrSourceTree - Variable in class mgui.interfaces.plots.InterfacePlotDialog
sDim - Variable in class mgui.interfaces.shapes.volume.Volume3DTexture
search(Edge3d) - Method in class au.edu.unsw.cse.GiftWrap
search(Edge3d) - Method in class au.edu.unsw.cse.GiftWrapQT
search2d(Point3d) - Method in class au.edu.unsw.cse.GiftWrap
searchEdge(MeshEdge) - Method in class mgui.geometry.mesh.MeshEdgeSet: Finds the specified edge in this set
searchNN(K3DBinaryTree.K3DNode, Point3f, K3DBinaryTree.K3DNode, MguiFloat) - Method in class mgui.geometry.util.K3DBinaryTree: Does a recursive search of this tree to find the nearest neighbour of point.
section - Variable in class mgui.interfaces.shapes.mesh.MeshPlaneMaskOptions
section - Variable in class mgui.interfaces.shapes.Shape2DSectionNode
section - Variable in class mgui.interfaces.tools.shapes.ToolGetConvexHull2DOptions
section - Variable in class mgui.io.domestic.shapes.PointSet2DInputOptions
SECTION - Static variable in class mgui.interfaces.tools.graphics.ToolZoomExt2D
section_changed - Variable in class mgui.interfaces.graphics.InterfaceGraphic2D
section_node - Variable in class mgui.interfaces.shapes.ShapeSet2DInt
section_polygons - Variable in class mgui.interfaces.shapes.ShapeModel3D
section_polygons - Variable in class mgui.interfaces.shapes.ShapeSet3DInt
section_set - Variable in class mgui.interfaces.shapes.mesh.MeshPlaneMaskOptions
section_set - Variable in class mgui.interfaces.shapes.Shape2DSectionNode
section_set - Variable in class mgui.interfaces.tools.shapes.ToolGetConvexHull2DOptions
section_set - Variable in class mgui.io.domestic.shapes.PointSet2DInputOptions
section_set - Variable in class mgui.io.domestic.shapes.xml.SectionSet3DXMLHandler
SectionAdded - mgui.interfaces.shapes.util.ShapeEvent.EventType
SectionRemoved - mgui.interfaces.shapes.util.ShapeEvent.EventType
sections - Variable in class mgui.interfaces.shapes.SectionSet3DInt
sections_node - Variable in class mgui.interfaces.shapes.ShapeModel3D
sections_node - Variable in class mgui.interfaces.shapes.ShapeSet3DInt
sectionSet - Variable in class mgui.io.standard.xml.svg.SVGInputOptions
SectionSet2DInt - Class in mgui.interfaces.shapes: Provides a 2D representation of a 3D section set, where it intersects a particular plane.
SectionSet2DInt() - Constructor for class mgui.interfaces.shapes.SectionSet2DInt
SectionSet2DInt(SectionSet3DInt, Plane3D) - Constructor for class mgui.interfaces.shapes.SectionSet2DInt
SectionSet3DInt - Class in mgui.interfaces.shapes: Represents a set of parallel sections, based upon a reference plane (thisShape), and a spacing value.
SectionSet3DInt() - Constructor for class mgui.interfaces.shapes.SectionSet3DInt
SectionSet3DInt(String, Plane3D, float) - Constructor for class mgui.interfaces.shapes.SectionSet3DInt
SectionSet3DInt(String, Plane3D, float, double) - Constructor for class mgui.interfaces.shapes.SectionSet3DInt
SectionSet3DXMLHandler - Class in mgui.io.domestic.shapes.xml: XML handler for a SectionSet3DInt object.
SectionSet3DXMLHandler() - Constructor for class mgui.io.domestic.shapes.xml.SectionSet3DXMLHandler
SectionSetIterator - Class in mgui.interfaces.shapes.util
SectionSetIterator() - Constructor for class mgui.interfaces.shapes.util.SectionSetIterator
SectionSetIterator(SectionSet3DInt) - Constructor for class mgui.interfaces.shapes.util.SectionSetIterator
seek(DynamicModelComponent) - Method in class mgui.models.dynamic.DynamicModelEngine: Returns the index of component c.
seek(T) - Method in class mgui.datasources.DataIndex: Seeks for seek_value in this index.
segments - Variable in class mgui.geometry.Polygon2D
select - Variable in class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog.YTableModel
select - Variable in class mgui.interfaces.plots.sgt.SgtScatterPlotDialog.XYTableModel
select(int) - Method in class au.edu.unsw.cse.Edge3dPlus
select(int) - Method in interface au.edu.unsw.cse.Object3d
select(int) - Method in class au.edu.unsw.cse.Object3dAdaptor
select(int) - Method in class au.edu.unsw.cse.Point3dObject3d
select(int) - Method in class au.edu.unsw.cse.Triangle3dPlus
select(int) - Method in class mgui.interfaces.shapes.mesh.VertexSelection
select(Object) - Method in class mgui.interfaces.attributes.AttributeSelection: Sets the current selection.
select(String) - Method in class mgui.interfaces.attributes.AttributeSelectionMap
select(List<Integer>) - Method in class mgui.interfaces.shapes.mesh.VertexSelection
SELECT - Static variable in class mgui.interfaces.tools.shapes.ToolSelectShape2D
SELECT - Static variable in class mgui.interfaces.tools.shapes.ToolSelectShape3D
selectAnchor(int) - Method in class mgui.interfaces.maps.ContinuousColourBar
selectBoundaryNodes(Mesh3DInt) - Method in class mgui.geometry.mesh.MeshEngine
selectDimension() - Method in class au.edu.unsw.cse.AppletHull: Set things up for 2D or 3D display
selected - Variable in class mgui.interfaces.attributes.AttributeSelectionMap
selected - Variable in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer: Is the value currently selected.
selected - Variable in class mgui.interfaces.graphs.tree.GraphTreeCellRenderer
selected - Variable in class mgui.interfaces.shapes.trees.ShapeTreeCellRenderer
selected_nodes - Variable in class mgui.interfaces.shapes.InterfaceShape
selected_nodes - Variable in class mgui.interfaces.shapes.mesh.VertexSelection
selected_vertices_group - Variable in class mgui.interfaces.shapes.Shape3DInt
selectedAnchor - Variable in class mgui.interfaces.maps.ContinuousColourBar
selectedBG - Variable in class mgui.interfaces.attributes.tree.AttributeTreeCellEditor
selectedBG - Variable in class mgui.interfaces.attributes.tree.AttributeTreeCellRenderer
selectedBG - Variable in class mgui.interfaces.graphs.tree.GraphTreeCellRenderer
selectedBG - Variable in class mgui.interfaces.shapes.trees.ShapeTreeCellRenderer
selectedLine - Variable in class mgui.interfaces.maps.ContinuousColourBar
selectedModel - Variable in class mgui.interfaces.models.InterfaceDynamicModelPanel
selectedNodes - Variable in class mgui.interfaces.tools.shapes.ToolQueryShape3D
selectedNodes - Variable in class mgui.interfaces.tools.shapes.ToolSelectShape2D
selectedNodes - Variable in class mgui.interfaces.tools.shapes.ToolSelectShape3D
selectedPt - Variable in class mgui.interfaces.tools.shapes.ToolQueryShape3D
selectedPt - Variable in class mgui.interfaces.tools.shapes.ToolSelectShape2D
selectedPt - Variable in class mgui.interfaces.tools.shapes.ToolSelectShape3D
selectedShape - Variable in class mgui.interfaces.tools.shapes.ToolQueryShape3D
selectedShape - Variable in class mgui.interfaces.tools.shapes.ToolSelectShape2D
selectedShape - Variable in class mgui.interfaces.tools.shapes.ToolSelectShape3D
selectFloodFill(Mesh3D, VertexSelection, int, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions: Selects all nodes surrounding a seed node in a region enclosed by selected nodes; if seed node is not fully enclosed, this will select the entire mesh.
selection_listeners - Variable in class mgui.interfaces.shapes.selection.ShapeSelectionSet
selectionIndex - Variable in class mgui.interfaces.InterfaceDisplayPanel
selections - Variable in class mgui.interfaces.shapes.ShapeModel3D
selectionSet - Variable in class mgui.interfaces.tools.shapes.ToolQueryShape3D
selectionSet - Variable in class mgui.interfaces.tools.shapes.ToolSelectShape2D
selectionSet - Variable in class mgui.interfaces.tools.shapes.ToolSelectShape3D
selectionSetNode - Variable in class mgui.interfaces.shapes.ShapeModel3D
selectionSets - Variable in class mgui.interfaces.InterfaceWorkspace
selectionSets - Variable in class mgui.io.standard.xml.svg.SVGFileInterface
selectModel(String) - Method in class au.edu.unsw.cse.Applet3d: override this method if we want a choice of models
selectModel(String) - Method in class au.edu.unsw.cse.AppletDepth: override this method if we want a choice of models
selectModel(String) - Method in class au.edu.unsw.cse.AppletHull: override this method if we want a choice of models
selectModel(String) - Method in class au.edu.unsw.cse.AppletPatch: override this method if we want a choice of models
SENSITIVITY - Static variable in class au.edu.unsw.cse.Viewer
sensors - Variable in class mgui.models.environments.SimpleEnvironment
SensoryNeuron - Interface in mgui.neuro.components
session_error - Variable in class mgui.io.standard.nifti.Nifti1Dataset
SessionFrame - Class in mgui.interfaces.frames: Main frame class for an instance of ModelGUI.
SessionFrame() - Constructor for class mgui.interfaces.frames.SessionFrame
set(int, boolean) - Method in class mgui.interfaces.shapes.mesh.VertexSelection
set(int, double, double) - Method in class mgui.stats.Histogram
set(int, String) - Method in class mgui.interfaces.maps.NameMap
set(Point3dObject3d[]) - Method in class au.edu.unsw.cse.Points3d
set(View3dInfo) - Method in class au.edu.unsw.cse.View3d
set(View3dInfo) - Method in class au.edu.unsw.cse.View3dInfo
set(Color) - Method in class mgui.util.Colour
set(Color) - Method in class mgui.util.Colour4f
set(String) - Method in class mgui.io.foreign.vol.CoordAttr
set(String) - Method in class mgui.io.foreign.vol.StringAttr
set(ArrayList<MguiNumber>, int, double, double) - Method in class mgui.stats.Histogram
set(DataSourceItem) - Method in class mgui.datasources.DataRecordSet
set(XYData<T>) - Method in class mgui.interfaces.plots.XYData: Sets the X and Y values
set(VertexSelection) - Method in class mgui.interfaces.shapes.mesh.VertexSelection
set(Point3d) - Method in class mgui.io.foreign.vol.CoordAttr
set(Point3f) - Method in class mgui.io.foreign.vol.CoordAttr
SET_BY_COLOUR - Static variable in class mgui.io.standard.xml.svg.SVGFileInterface
set_data_type - Variable in class mgui.interfaces.neuro.CorticalThicknessOptions
set_dims - Variable in class mgui.io.domestic.shapes.VolumeInputOptions
SET_DYNAMIC - Static variable in class mgui.io.foreign.vol.VolumeInputOptions
set_geom - Variable in class mgui.io.domestic.shapes.VolumeInputOptions
set_intensity_from_histogram - Variable in class mgui.interfaces.neuro.CorticalThicknessOptions
set_name_map - Variable in class mgui.io.foreign.caret.CaretPaintInOptions
set_operator - Variable in class mgui.pipelines.NativeProcess
set_origin - Variable in class mgui.io.domestic.shapes.VolumeInputOptions
set_target - Variable in class mgui.interfaces.graphics.video.SetView3DTask
set_type - Variable in class mgui.io.domestic.shapes.VolumeInputOptions
SET_VOLUME - Static variable in class mgui.io.foreign.vol.VolumeInputOptions
set_zoom - Variable in class mgui.interfaces.graphics.video.SetView3DTask
set3DObjects() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D: Sets the 2D section-projected shapes from the 3D objects in the current model.
setA_Base(double) - Method in class mgui.neuro.components.cortical.functions.BiexponentialFunction
setA_ee(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setA_ei(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setA_ie(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setA_Max(double) - Method in class mgui.neuro.components.cortical.functions.BiexponentialFunction
setA_ne(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setA_ni(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setAllMasks(boolean) - Method in class mgui.interfaces.shapes.Volume3DInt
setAlpha - Variable in class mgui.interfaces.shapes.volume.Volume3DRenderer
setAlpha - Variable in class mgui.io.domestic.shapes.VolumeFileLoader
setAlpha - Variable in class mgui.io.foreign.vol.VolumeInputOptions
setAlpha(boolean) - Method in class mgui.io.domestic.shapes.VolumeFileLoader
setAlpha(boolean, float, float) - Method in class mgui.io.domestic.shapes.VolumeFileLoader
setAlpha(double) - Method in class mgui.image.util.WindowedColourModel
setAlpha(float) - Method in class mgui.interfaces.shapes.InterfaceShape: Sets the current transparency level for this shape.
setAlpha(float) - Method in class mgui.interfaces.shapes.Shape2DInt
setAlpha(float) - Method in class mgui.interfaces.shapes.Shape3DInt
setAlpha(float) - Method in class mgui.util.Colour
setAlpha(float) - Method in class mgui.util.Colour4f
setAlpha(int) - Method in class mgui.util.Colour
setAlpha(int) - Method in class mgui.util.Colour1f
setAlpha(int) - Method in class mgui.util.Colour2f
setAlpha(int, float) - Method in class mgui.interfaces.shapes.VolumeSet3DInt: Sets the transparency for the i'th volume in this set.
setAlphaMax(double) - Method in class mgui.image.util.WindowedColourModel
setAlphaMin(double) - Method in class mgui.image.util.WindowedColourModel
setAmplitude(double) - Method in class mgui.models.updaters.PulseTrainUpdater.CurrentPulse
setAmplitude(double) - Method in class mgui.neuro.updaters.PulseTrainUpdater.CurrentPulse
setAngle(Point2d) - Method in class mgui.geometry.util.GeometryFunctions.AnglePoint2D
setAntialiasing(boolean) - Method in class mgui.interfaces.shapes.Polygon3DInt: Sets whether this polygon will be rendered with anti-aliasing.
setApplicationDataDir(String) - Static method in class mgui.interfaces.InterfaceEnvironment: Sets the application data directory; if this is not set, returns the current dir
setApplyClip(boolean) - Method in class mgui.interfaces.shapes.SectionSet3DInt
setApplyMasks(boolean) - Method in class mgui.interfaces.shapes.Volume3DInt: Sets whether currently set masks are to be applied or not.
setApplySigmoid(boolean) - Method in class mgui.neuro.components.cortical.functions.BiexponentialFunction
setArrowScale(float) - Method in class mgui.interfaces.shapes.Vector2DInt
setArrowScale(float) - Method in class mgui.interfaces.shapes.Vector3DInt
setAttribute(String, Object) - Method in class mgui.datasources.DataConnection
setAttribute(String, Object) - Method in class mgui.datasources.DataSourceDriver
setAttribute(String, Object) - Method in class mgui.geometry.mesh.MeshEngine
setAttribute(String, Object) - Method in class mgui.geometry.neuro.mesh.NeuroMeshEngine
setAttribute(String, Object) - Method in class mgui.geometry.volume.VolumeEngine
setAttribute(String, Object) - Method in interface mgui.interfaces.attributes.AttributeObject: Sets a value for a specific attribute.
setAttribute(String, Object) - Method in class mgui.interfaces.graphics.Graphic2DGrid
setAttribute(String, Object) - Method in class mgui.interfaces.graphics.util.DrawingEngine
setAttribute(String, Object) - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
setAttribute(String, Object) - Method in class mgui.interfaces.InterfacePanel
setAttribute(String, Object) - Method in class mgui.interfaces.layouts.InterfaceLayoutPanel
setAttribute(String, Object) - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
setAttribute(String, Object) - Method in class mgui.interfaces.maps.Camera3D
setAttribute(String, Object) - Method in class mgui.interfaces.plots.InterfacePlot
setAttribute(String, Object) - Method in class mgui.interfaces.plots.InterfacePlotObject
setAttribute(String, Object) - Method in class mgui.interfaces.projects.InterfaceProject
setAttribute(String, Object) - Method in class mgui.interfaces.shapes.InterfaceShape
setAttribute(String, Object) - Method in class mgui.interfaces.shapes.paths.PathDataRenderer
setAttribute(String, Object) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
setAttribute(String, Object) - Method in class mgui.interfaces.shapes.util.ShapeEngine
setAttribute(String, Object) - Method in class mgui.interfaces.tables.InterfaceTableModel
setAttribute(String, Object) - Method in class mgui.interfaces.variables.VariableInt
setAttribute(String, Object) - Method in class mgui.models.dynamic.functions.Function
setAttribute(String, Object) - Method in class mgui.models.networks.AbstractNetworkModel
setAttribute(String, Object) - Method in class mgui.models.updaters.PulseTrainUpdater.CurrentPulse
setAttribute(String, Object) - Method in class mgui.models.updaters.SimpleEnvironmentUpdater
setAttribute(String, Object) - Method in class mgui.neuro.components.AbstractNeuroComponent
setAttribute(String, Object) - Method in class mgui.neuro.graphs.NeuralNetGraph
setAttribute(String, Object) - Method in class mgui.neuro.updaters.PulseTrainUpdater.CurrentPulse
setAttribute(Attribute) - Method in class mgui.interfaces.attributes.tree.AttributeButton
setAttribute(Attribute<?>) - Method in class mgui.interfaces.attributes.AttributeList: Sets the given attribute.
setAttribute(Attribute<V>, boolean) - Method in class mgui.interfaces.attributes.AttributeList
setAttributeListeners(AttributeList) - Method in class mgui.interfaces.attributes.AttributeList
setAttributeObject(AttributeObject) - Method in class mgui.interfaces.attributes.AttributeDialogBox
setAttributePanel(InterfaceAttributePanel) - Method in class mgui.interfaces.attributes.table.InterfaceAttributeTable
setAttributes(AttributeList) - Method in class mgui.datasources.DataConnection
setAttributes(AttributeList) - Method in class mgui.datasources.DataSourceDriver
setAttributes(AttributeList) - Method in class mgui.geometry.mesh.MeshEngine
setAttributes(AttributeList) - Method in class mgui.geometry.neuro.mesh.NeuroMeshEngine
setAttributes(AttributeList) - Method in class mgui.geometry.volume.VolumeEngine
setAttributes(AttributeList) - Method in interface mgui.interfaces.attributes.AttributeObject: Sets the list of attributes for this object.
setAttributes(AttributeList) - Method in class mgui.interfaces.attributes.InterfaceAttributePanel
setAttributes(AttributeList) - Method in class mgui.interfaces.attributes.table.AttributeTableModel
setAttributes(AttributeList) - Method in class mgui.interfaces.attributes.table.InterfaceAttributeTable
setAttributes(AttributeList) - Method in class mgui.interfaces.graphics.Graphic2DGrid
setAttributes(AttributeList) - Method in class mgui.interfaces.graphics.util.DrawingEngine
setAttributes(AttributeList) - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
setAttributes(AttributeList) - Method in class mgui.interfaces.InterfacePanel
setAttributes(AttributeList) - Method in class mgui.interfaces.layouts.InterfaceLayoutPanel
setAttributes(AttributeList) - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
setAttributes(AttributeList) - Method in class mgui.interfaces.maps.Camera3D
setAttributes(AttributeList) - Method in class mgui.interfaces.plots.InterfacePlot
setAttributes(AttributeList) - Method in class mgui.interfaces.plots.InterfacePlotObject
setAttributes(AttributeList) - Method in class mgui.interfaces.projects.InterfaceProject
setAttributes(AttributeList) - Method in class mgui.interfaces.shapes.InterfaceShape
setAttributes(AttributeList) - Method in interface mgui.interfaces.shapes.LightweightShape
setAttributes(AttributeList) - Method in class mgui.interfaces.shapes.LPolygon2DInt
setAttributes(AttributeList) - Method in class mgui.interfaces.shapes.LPolygon3DInt
setAttributes(AttributeList) - Method in class mgui.interfaces.shapes.paths.PathDataRenderer
setAttributes(AttributeList) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
setAttributes(AttributeList) - Method in class mgui.interfaces.shapes.util.ShapeEngine
setAttributes(AttributeList) - Method in class mgui.interfaces.tables.InterfaceTableModel
setAttributes(AttributeList) - Method in class mgui.interfaces.variables.VariableInt
setAttributes(AttributeList) - Method in class mgui.models.dynamic.functions.Function
setAttributes(AttributeList) - Method in class mgui.models.networks.AbstractNetworkModel
setAttributes(AttributeList) - Method in class mgui.models.updaters.PulseTrainUpdater.CurrentPulse
setAttributes(AttributeList) - Method in class mgui.models.updaters.SimpleEnvironmentUpdater
setAttributes(AttributeList) - Method in class mgui.neuro.components.AbstractNeuroComponent
setAttributes(AttributeList) - Method in class mgui.neuro.graphs.NeuralNetGraph
setAttributes(AttributeList) - Method in class mgui.neuro.updaters.PulseTrainUpdater.CurrentPulse
setAttributesFrom3DParent(Shape2DInt, Shape3DInt, boolean) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions: Sets a 2D child's attributes from its parent.
setAutoCenter(boolean) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
setAutoPlay(boolean) - Method in class au.edu.unsw.cse.AnimationWidget: Determine if animation plays automatically
setAxes - Variable in class mgui.io.foreign.vol.VolumeInputOptions
setAxes(Axes3D) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
setAxes(Vector3f[]) - Method in interface mgui.interfaces.shapes.volume.VolumeMetadata: Sets the S, T, and R axes of this volume.
setAxes(Vector3f[]) - Method in class mgui.io.foreign.fsl.FSLVolumeMetadata
setAxes(Vector3f[]) - Method in class mgui.io.foreign.wunil.WunilDataset
setAxes(Vector3f[]) - Method in class mgui.io.standard.nifti.NiftiMetadata
setAxes(Vector3f, Vector3f, Vector3f) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
setAxesList(JComboBox) - Static method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
setAxesSize(float) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
setAxesSize(float) - Method in class mgui.interfaces.graphics.util.Axes3D
setAxis() - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
setAxisB(float) - Method in class mgui.geometry.Ellipse2D
setAxisPanel(int) - Method in class mgui.interfaces.shapes.volume.VolumeMaskDialog_old
setAxisX(Vector3f) - Method in class mgui.geometry.Plane3D
setAxisY(Vector3f) - Method in class mgui.geometry.Plane3D
setAxon(AbstractAxon) - Method in class mgui.neuro.components.AbstractMotorNeuron
setAxon(AbstractAxon) - Method in class mgui.neuro.components.simple.SimpleNeuron
setAxon(Axon) - Method in class mgui.neuro.components.AbstractNeuron
setAxon(Axon) - Method in class mgui.neuro.components.compartments.CompartmentalNeuron
setAxon(Axon) - Method in interface mgui.neuro.components.Neuron
setBackFlip(boolean) - Method in class mgui.interfaces.shapes.Mesh3DInt
setBackground(Color) - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer: Subclassed to map ColorUIResources to null.
setBackgroundColour(Color) - Method in class mgui.interfaces.graphics.InterfaceGraphic
setBackgroundColour(Color) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
setBackgroundNonSelectionColor(Color) - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer: Sets the background color to be used for non selected nodes.
setBackgroundSelectionColor(Color) - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer: Sets the color to use for the background if node is selected.
setBaseGrid(Grid3D) - Method in class mgui.interfaces.shapes.dynamic.Volume4DInt
setBasePt(Point3f) - Method in class mgui.geometry.Box3D
setBatch(boolean) - Method in class mgui.interfaces.plots.MatrixPlotDataSource: Informs this data source to treat all subsequent operations as a batch job; i.e., do not fire any events.
setBatch(boolean) - Method in class mgui.interfaces.plots.PlotXYDataSource: Informs this data source to treat all subsequent operations as a batch job; i.e., do not fire any events.
setBatch(boolean) - Method in class mgui.interfaces.variables.VariableInt
setBlue(float) - Method in class mgui.util.Colour
setBlue(float) - Method in class mgui.util.Colour3f
setBlue(float) - Method in class mgui.util.Colour4f
setBlue(int) - Method in class mgui.util.Colour
setBlue(int) - Method in class mgui.util.Colour1f
setBlue(int) - Method in class mgui.util.Colour2f
setBorderSelectionColor(Color) - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer: Sets the color to use for the border.
setBorderWidth(float) - Method in class mgui.interfaces.gui.ColourButton
setBoundBox2D(Rect2D) - Method in class mgui.interfaces.shapes.SectionSet3DInt
setBoundBoxNode() - Method in class mgui.interfaces.shapes.Shape3DInt: Sets a bounding box node for this ShapeInt, that can be retrieved using Shape3DInt.getBoundBoxNode().
setBoundBoxNode() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
setBounds(int, int, int, int) - Method in class mgui.interfaces.trees.InterfaceTreeTable.TreeTableCellRenderer
setBounds(Box3D) - Method in class mgui.geometry.Grid3D
setBounds(Box3D) - Method in class mgui.interfaces.shapes.Volume3DInt
setBounds(Rect2D) - Method in class mgui.geometry.Text2D
setBounds(Rect2D) - Method in class mgui.interfaces.shapes.Text2DInt
setBounds(Sphere3D) - Method in class mgui.interfaces.maps.Map3D
setBoundsScale(float) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
setBufferSize(int) - Method in interface mgui.interfaces.io.DataBuffer: Resizes this buffer to s.
setBusy(boolean) - Method in class mgui.interfaces.stats.HistogramPlot
setButtonType(int) - Method in class mgui.interfaces.InterfaceDialogBox
setByteOrder(ByteOrder) - Method in class mgui.io.util.ByteOrderedFile
setCacheValue(Object, int, int) - Method in class mgui.interfaces.datasources.DataTableModel
setCamera(Point3d) - Method in class au.edu.unsw.cse.View3dInfo: Calculate UVW coordinate system, given view direction, using default up vector
setCamera(Point3d, Point3d) - Method in class au.edu.unsw.cse.View3dInfo: Calculate UVW coordinate system, given view direction, and up vector
setCamera(Camera3D) - Method in class mgui.interfaces.maps.Map3D
setCanvas(Canvas3D) - Method in class mgui.interfaces.graphics.InterfaceCanvas3D
setCenter(Point3f) - Method in class mgui.interfaces.maps.Map3D
setCenterOfRotation(Point3d) - Method in class mgui.interfaces.maps.Camera3D
setCenterOfRotation(Point3f) - Method in class mgui.interfaces.maps.Camera3D
setCentre(Point3d) - Method in interface au.edu.unsw.cse.Object3d
setCentre(Point3d) - Method in class au.edu.unsw.cse.Object3dAdaptor
setCentre(Point3d) - Method in class au.edu.unsw.cse.Point3dObject3d
SetChanged - mgui.interfaces.shapes.selection.ShapeSelectionEvent.EventType
setChannel(MatrixInt) - Method in class mgui.interfaces.plots.MatrixPlotDataSource: Sets a channel for this data source; uses the object's name as the channel name.
setChannelNames(List<String>) - Method in interface mgui.interfaces.io.NamedDataSource
setChannelNames(List<String>) - Method in class mgui.interfaces.plots.MatrixPlotDataSource
setChannelNames(List<String>) - Method in class mgui.interfaces.plots.PlotTimeSeriesDataSource
setChannelNames(List<String>) - Method in class mgui.interfaces.plots.PlotXYDataSource
setChannelNames(List<String>) - Method in class mgui.models.environments.AbstractEnvironmentDataSource
setCharge(Mesh3D, MeshSmoothing.Particle, double, double, int) - Static method in class mgui.geometry.mesh.MeshSmoothing: Set the charge repulsion for this particle based upon its neighbour's edge distances.
setChild3D(Shape3DInt) - Method in class mgui.interfaces.shapes.Shape2DInt
setCircle(Circle2D) - Method in class mgui.morph.sections.RadialRep2D
setCircle(Circle2D) - Method in class mgui.morph.sections.RadialRep2DInt
setCircleRadius(float) - Method in class mgui.morph.sections.RadialRep2D
setClassName(String) - Method in class mgui.datasources.DataSourceDriver
setClipDistDown(float) - Method in class mgui.interfaces.shapes.SectionSet3DInt: Sets the downwards clipping distance for this section set
setClipDistUp(float) - Method in class mgui.interfaces.shapes.SectionSet3DInt: Sets the upwards clipping distance for this section set
setClock(long) - Method in class mgui.interfaces.graphics.video.Video: Sets the clock to a specific value and alerts all listeners of this.
setClosed(boolean) - Method in class mgui.interfaces.shapes.Polygon3DInt: Sets whether this polygon's end vertices are to be connected.
setClosedIcon(Icon) - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer: Sets the icon used to represent non-leaf nodes that are not expanded.
setColor(int, Color) - Method in class au.edu.unsw.cse.View3d: set a colour for objects
setColors(Color, Color) - Method in class au.edu.unsw.cse.QuadMesh3d
setColorVisibility(int, boolean) - Method in class au.edu.unsw.cse.Viewer: Set the visibility of a colour
setColour(int, String, Colour) - Method in class mgui.interfaces.maps.DiscreteColourMap
setColour(int, Colour) - Method in class mgui.interfaces.maps.DiscreteColourMap
setColour(Color) - Method in class mgui.interfaces.graphics.Graphic2DGrid
setColour(Color) - Method in class mgui.interfaces.gui.ColourButton
setColour(Color) - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
setColour(Color) - Method in class mgui.interfaces.plots.osp.InterfaceStripChart.Variable
setColour(Color) - Method in class mgui.interfaces.plots.sgt.SgtLine
setColour(Color) - Method in class mgui.interfaces.plots.sgt.SgtPlotObject
setColour(Color) - Method in class mgui.interfaces.plots.sgt.SgtPointSet
setColour(String, Colour) - Method in class mgui.interfaces.maps.DiscreteColourMap
setColour(Color4f) - Method in class mgui.util.Colour4f
setColourLimits(double, double) - Method in class mgui.interfaces.shapes.VertexDataColumn: Sets the data limits for this column; fires an event if update is true.
setColourLimits(double, double, boolean) - Method in class mgui.interfaces.shapes.VertexDataColumn: Sets the colour limits for this column; fires an event if update is true.
setColourLimits(double, double, boolean) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
setColourMap() - Method in class mgui.interfaces.shapes.TensorVolume3DInt
setColourMap(String, ColourMap) - Method in class mgui.interfaces.shapes.InterfaceShape: Sets the colour map for column.
setColourMap(ColourMap) - Method in class mgui.image.util.WindowedColourModel
setColourMap(ColourMap) - Method in class mgui.interfaces.shapes.InterfaceShape: Sets the colour map for the current column.
setColourMap(ColourMap) - Method in class mgui.interfaces.shapes.PointSet2DInt
setColourMap(ColourMap) - Method in class mgui.interfaces.shapes.VertexDataColumn: Sets the colour map associated with this column.
setColourMap(ColourMap, boolean) - Method in class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt
setColourMap(ColourMap, boolean) - Method in class mgui.interfaces.shapes.neuro.CorticalSurfaceSet3DInt
setColourMap(ColourMap, boolean) - Method in class mgui.interfaces.shapes.PointSet2DInt
setColourMap(ColourMap, boolean) - Method in class mgui.interfaces.shapes.VertexDataColumn: Sets the colour map associated with this column.
setColourMap(ColourMap, boolean) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
setColourMap(ColourMap, double, double, boolean) - Method in class mgui.interfaces.shapes.VertexDataColumn: Sets the colour map associated with this column.
setColourMap(ColourMap, double, double, boolean) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
setColourMap(DiscreteColourMap) - Method in class mgui.interfaces.plots.osp.InterfaceStripChart
setColourMax(double) - Method in class mgui.interfaces.shapes.VertexDataColumn: Sets the data maximum for this column, and fires an event.
setColourMax(double, boolean) - Method in class mgui.interfaces.shapes.VertexDataColumn: Sets the data maximum for this column; fires an event if update is true.
setColourMax(double, boolean) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
setColourMin(double) - Method in class mgui.interfaces.shapes.VertexDataColumn: Sets the data maximum for this column, and fires an event.
setColourMin(double, boolean) - Method in class mgui.interfaces.shapes.VertexDataColumn: Sets the data maximum for this column; fires an event if update is true.
setColourMin(double, boolean) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
setColours(ArrayList<Colour>) - Method in class mgui.interfaces.shapes.Mesh2DInt
setColours(Colour3f, Colour3f, Colour3f) - Method in class mgui.io.domestic.maps.Vector3ColourMap
setColourTableOption(SVGInputOptions.SVGMap) - Method in class mgui.io.standard.xml.svg.SVGInputOptions
setCols(int) - Method in class mgui.interfaces.plots.InterfacePlotMulti
setColumns(int) - Method in class mgui.util.JMultiLineToolTip
setCombo(JComboBox) - Method in class mgui.util.OptionList
setComboMode(AttributeSelectionMap.ComboMode) - Method in class mgui.interfaces.attributes.AttributeSelectionMap
setComboPanel(InterfaceComboPanel) - Method in class mgui.interfaces.InterfaceWorkspace
setComboPanel(InterfaceComboPanel, InterfaceDisplayPanel, boolean) - Static method in class mgui.interfaces.InterfaceEnvironment: Fills a combo panel with new instances of all loaded InterfacePanel classes
setComboRenderer(InterfaceComboBoxRenderer) - Method in class mgui.interfaces.attributes.AttributeSelectionMap
setComboWidth(int) - Method in class mgui.interfaces.attributes.AttributeSelectionMap
setCommand(String) - Method in class mgui.pipelines.NativeProcess: Sets the native command for this process.
setCompartments() - Method in class mgui.neuro.components.compartments.CompartmentalComponent: Set/reset list of compartments to size N
setCompartments() - Method in class mgui.neuro.components.compartments.CompartmentalDendrite
setCompartments() - Method in class mgui.neuro.components.compartments.CompartmentalNeuron
setCompartments() - Method in class mgui.neuro.components.compartments.CompartmentalSoma
setCompositeAlpha(String, double) - Method in class mgui.interfaces.shapes.Volume3DInt: Sets the alpha value for column, which determines its transparency if composite mode is set.
setCompositeAlpha(String, double, boolean) - Method in class mgui.interfaces.shapes.Volume3DInt: Sets the alpha value for column, which determines its transparency if composite mode is set.
setCompositeIndex(String, int) - Method in class mgui.interfaces.shapes.Volume3DInt: Adjusts the order of column column in the composite rendering stack.
setCompositeIndex(String, int, boolean) - Method in class mgui.interfaces.shapes.Volume3DInt: Adjusts the order of column column in the composite rendering stack.
setConnection(DataConnection) - Method in class mgui.datasources.DataSource: Sets this data source's connection parameters.
setConsoleErrorColour(Color) - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
setConsoleFont(Font) - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
setConsoleNormalColour(Color) - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
setConstraint(int, boolean) - Method in class mgui.interfaces.shapes.InterfaceShape
setContent(Clipboard.Item) - Method in class mgui.interfaces.Clipboard: Sets the current content object, overwritten any existing one.
setContinuousColourMap(ContinuousColourMap) - Method in class mgui.interfaces.maps.InterfaceMapPanel
setCoordFile(File) - Method in class mgui.io.foreign.caret.CaretSurfaceLoader
setCoordFile(File) - Method in class mgui.io.foreign.caret.CaretSurfaceWriter
setCoordMap(Graph<V, E>) - Method in class mgui.interfaces.graphs.layouts.Coordinate3DLayout
setCoordMap(Graph<V, E>) - Method in class mgui.interfaces.graphs.layouts.CoordinateLayout
setCoordMap(Graph<V, E>) - Method in class mgui.interfaces.shapes.graphs.util.Graph2DLayout
setCoords(float[]) - Method in class mgui.geometry.Box3D
setCoords(float[]) - Method in class mgui.geometry.Cube3D
setCoords(float[]) - Method in class mgui.geometry.Graph3D
setCoords(float[]) - Method in class mgui.geometry.LineSegment3D
setCoords(float[]) - Method in class mgui.geometry.Mesh3D
setCoords(float[]) - Method in class mgui.geometry.Plane3D
setCoords(float[]) - Method in class mgui.geometry.PointSet3D
setCoords(float[]) - Method in class mgui.geometry.Polygon2D
setCoords(float[]) - Method in class mgui.geometry.Polygon3D: Sets the nodes array from an array in the form {x1,y1,z1,x2,...,zn} The last coordinate must equal the first.
setCoords(float[]) - Method in class mgui.geometry.Rect3D
setCoords(float[]) - Method in interface mgui.geometry.Shape
setCoords(float[]) - Method in class mgui.geometry.Shape2D: Sets the coordinates of this shape from coords.
setCoords(float[]) - Method in class mgui.geometry.Shape3D
setCoords(float[]) - Method in class mgui.geometry.Sphere3D
setCoords(float[]) - Method in class mgui.geometry.Triangle3D
setCoords(float[]) - Method in class mgui.geometry.Vector3D
setCoordSys(int) - Method in class mgui.interfaces.graphics.util.DrawingEngine
setCreatableSceneNode(boolean) - Method in class mgui.interfaces.shapes.Shape3DInt
setCurrent(String) - Method in class mgui.util.OptionList
setCurrentColumn(String) - Method in class mgui.interfaces.shapes.InterfaceShape
setCurrentColumn(String) - Method in class mgui.interfaces.shapes.Shape2DInt
setCurrentColumn(String, boolean) - Method in class mgui.interfaces.shapes.InterfaceShape
setCurrentColumn(String, boolean) - Method in class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt
setCurrentColumn(String, boolean) - Method in class mgui.interfaces.shapes.neuro.CorticalSurfaceSet3DInt
setCurrentColumn(String, boolean) - Method in class mgui.interfaces.shapes.Shape2DInt
setCurrentColumn(String, boolean) - Method in class mgui.interfaces.shapes.Shape3DInt
setCurrentColumn(GridVertexDataColumn) - Method in class mgui.interfaces.shapes.volume.Volume3DTexture: Sets the current data column for this texture.
setCurrentComposite(Volume3DInt) - Method in class mgui.interfaces.shapes.volume.Volume3DTexture
setCurrentFile(File) - Method in class mgui.interfaces.gui.FileButton
setCurrentMask(boolean[][][]) - Method in class mgui.interfaces.shapes.volume.Volume3DTexture: Sets the current mask for this texture; use null for no mask.
setCurrentModel(ShapeModel3D) - Method in class mgui.interfaces.InterfaceSelectionPanel
setCurrentProject(CaminoProject) - Method in class mgui.interfaces.neuro.imaging.camino.InterfaceCaminoPanel
setCurrentQuery() - Method in class mgui.interfaces.queries.InterfaceQueryPanel
setCurrentSection(int) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D: Sets the current section for the section set to be rendered in this graphic object.
setCurrentSection(SectionSet3DInt, int) - Method in class mgui.interfaces.InterfaceDisplayPanel
setCurrentSectionSet(SectionSet3DInt) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
setCurrentSectionSet(SectionSet3DInt) - Method in class mgui.interfaces.InterfaceDisplayPanel
setCurrentSelection(ShapeSelectionSet) - Method in class mgui.interfaces.InterfaceDisplayPanel
setCurrentSelection(ShapeSelectionSet, boolean) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
setCurrentSelection2D(ShapeSelectionSet, boolean) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
setCurrentSet(double[]) - Method in interface mgui.models.dynamic.stats.DynamicModelStatistics
setCurrentSet(double[]) - Method in class mgui.neuro.stats.SimpleStatistics
setCurrentSet(ShapeSelectionSet) - Method in class mgui.interfaces.InterfaceSelectionPanel
setCurrentShapeModel(String) - Method in class mgui.interfaces.InterfaceWorkspace: Sets the current shape model for this Workspace.
setCurrentShapeModel(ShapeModel3D) - Method in class mgui.interfaces.InterfaceDisplayPanel
setCurrentShapeSet(ShapeSet2DInt) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
setCurrentState() - Method in class mgui.interfaces.trees.InterfaceTreePanel: Sets the current state of expanded nodes.
setCurrentSubsection(int) - Method in class mgui.morph.sections.MorphSections3DInt
setCurrentTool(E) - Method in class mgui.interfaces.graphics.InterfaceGraphic
setCurrentTool(E) - Method in interface mgui.interfaces.tools.Toolable
setCurrentTool(Tool2D) - Method in class mgui.interfaces.frames.SessionFrame
setCurrentTool(Tool2D) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
setCurrentTool(Tool3D) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
setCurrentTool(ToolGraph) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
setCurrentTool(ToolPlot) - Method in class mgui.interfaces.plots.InterfacePlotDisplay
setCurrentTool(Tool) - Method in class mgui.interfaces.InterfaceDisplayPanel
setCurrentTool(Tool) - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
setCurrentTool(Tool) - Method in class mgui.interfaces.tools.shapes.util.RulerDialog: Registers that tool is currently using this dialog.
setCurrentUpdateType(Volume3DTexture.UpdateTextureType) - Method in class mgui.interfaces.shapes.volume.Volume3DTexture: Specifies what type of update will be performed by Volume3DTexture.updateData(org.jogamp.java3d.ImageComponent3D,int,int,int,int,int).
setCurrentValue(double) - Method in class mgui.interfaces.graphs.AbstractGraphNode
setCurrentVolume(Volume3DInt) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
setCurrentVolumeSet(VolumeSet3DInt) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel: Set the current volume set; updates panel components to reflect the change
setCurrentWindow(InterfaceGraphicWindow) - Method in class mgui.interfaces.shapes.InterfaceSectionSetPanel
setCurrentWorkerThread(WorkerThread) - Method in class mgui.pipelines.PipelineState
setCylinderAppearance() - Method in class mgui.interfaces.shapes.Polygon3DInt
setData(byte[]) - Method in class mgui.interfaces.io.temp.TempBitmapDrawer
setData(double[]) - Method in class mgui.interfaces.io.temp.TempBitmapDrawer
setData(List<T>) - Method in class mgui.interfaces.io.DataBridgeXY
setData(List<T>) - Method in interface mgui.interfaces.io.DataOutputStream: Sets the data for this output stream.
setDataAsBytes(byte[]) - Method in class mgui.interfaces.io.DataBridgeXY
setDataAsBytes(byte[]) - Method in interface mgui.interfaces.io.DataOutputStream: Sets the data for this output stream as a byte array.
setDataDims() - Method in class mgui.interfaces.shapes.volume.VolumeMaskDialog_old
setDataDims(int[]) - Method in interface mgui.interfaces.shapes.volume.VolumeMetadata: Sets the data dimensions
setDataDims(int[]) - Method in class mgui.io.foreign.fsl.FSLVolumeMetadata
setDataDims(int[]) - Method in class mgui.io.foreign.wunil.WunilDataset
setDataDims(int[]) - Method in class mgui.io.standard.nifti.NiftiMetadata
setDataDims(int, int, int) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
setDataElements(int, int, Object, DataBuffer) - Method in class mgui.interfaces.shapes.util.GridSampleModel: Sets the data for a single pixel in the specified DataBuffer from a primitive array of type TransferType.
setDataFields(ArrayList<ArrayList<DataField>>) - Method in class mgui.io.domestic.datasources.ImportDataTableOptions: Sets the data fields which define this import; each list corresponds to the associated input file.
setDataFields(ArrayList<ArrayList<DataField>>, ArrayList<ArrayList<Boolean>>) - Method in class mgui.io.domestic.datasources.ImportDataTableOptions: Sets the data fields which define this import; each list corresponds to the associated input file.
setDataFilename(String) - Method in class mgui.io.foreign.wunil.WunilDataset
setDataFilename(String) - Method in class mgui.io.standard.nifti.Nifti1Dataset: Set the filename for the dataset data file
setDataItems(ArrayList<ProjectDataItem>) - Method in class mgui.interfaces.projects.ProjectDirectory
setDataLimits(double, double) - Method in class mgui.interfaces.shapes.VertexDataColumn: Sets the data limits for this column; fires an event if update is true.
setDataLimits(double, double, boolean) - Method in class mgui.interfaces.shapes.VertexDataColumn: Sets the data limits for this column; fires an event if update is true.
setDataLimits(double, double, boolean) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
setDataLineColour(Color) - Method in class mgui.interfaces.shapes.Vector2DInt
setDataLineHeight(float) - Method in class mgui.interfaces.shapes.Vector2DInt
setDataLineOffset(float) - Method in class mgui.interfaces.shapes.Vector2DInt
setDataMax(double) - Method in class mgui.interfaces.shapes.InterfaceShape: Sets the data maximum for the current column, and fires an event
setDataMax(double) - Method in class mgui.interfaces.shapes.PointSet2DInt
setDataMax(double) - Method in class mgui.interfaces.shapes.VertexDataColumn: Sets the data maximum for this column, and fires an event.
setDataMax(double, boolean) - Method in class mgui.interfaces.shapes.InterfaceShape: Sets the data maximum for the current column
setDataMax(double, boolean) - Method in class mgui.interfaces.shapes.VertexDataColumn: Sets the data maximum for this column; fires an event if update is true.
setDataMax(double, double) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
setDataMax(String, double, boolean) - Method in class mgui.interfaces.shapes.InterfaceShape: Sets the data maximum for the column
setDataMin(double) - Method in class mgui.interfaces.shapes.InterfaceShape: Sets the data minimum for the current column, and fires an event
setDataMin(double) - Method in class mgui.interfaces.shapes.PointSet2DInt
setDataMin(double) - Method in class mgui.interfaces.shapes.VertexDataColumn: Sets the data minimum for this column, and fires an event.
setDataMin(double, boolean) - Method in class mgui.interfaces.shapes.InterfaceShape: Sets the data minimum for the current column
setDataMin(double, boolean) - Method in class mgui.interfaces.shapes.VertexDataColumn: Sets the data minimum for this column; fires an event if update is true.
setDataMin(String, double, boolean) - Method in class mgui.interfaces.shapes.InterfaceShape: Sets the data minimum for the column
setDataRecordSet(DataRecordSet) - Method in class mgui.interfaces.tables.InterfaceDataTable
setDataSource(String) - Method in class mgui.interfaces.datasources.DataSourceDialogPanel
setDataSource(String) - Method in class mgui.interfaces.datasources.DataSourceListDialogPanel
setDataSource(String) - Method in class mgui.interfaces.datasources.tinysql.TinySQLDialogPanel
setDataSource(DataSource) - Method in class mgui.datasources.DataQuery
setDataSource(DataSource) - Method in class mgui.datasources.DataRecordSet
setDataSource(DataSource) - Method in interface mgui.datasources.DataSourceItem
setDataSource(DataSource) - Method in class mgui.datasources.DataTable
setDataSource(DataSource) - Method in class mgui.datasources.DataTableSet
setDataSource(DataSource) - Method in class mgui.io.domestic.datasources.ImportDataTableLoader: Sets the current DataSource for this loader.
setDataSource(DataSource) - Method in class mgui.io.domestic.datasources.ImportDataTableOptions
setDataSource(InterfaceDataSource<?>) - Method in class mgui.interfaces.plots.mgui.InterfacePlotMgui: Sets the data source for this plot
setDataSource(InterfaceDataSource<?>) - Method in class mgui.interfaces.plots.mgui.MatrixImagePlot
setDataSource(InterfaceDataSource<?>) - Method in class mgui.interfaces.plots.sgt.InterfacePlotSgt
setDataSource(InterfaceDataSource<?>) - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlot
setDataSource(InterfaceDataSource<?>) - Method in class mgui.interfaces.plots.sgt.SgtScatterplot
setDataSource(PlotTimeSeriesDataSource<T>) - Method in interface mgui.interfaces.plots.TimeSeriesPlot: Set a time series data source for this plot.
setDataSource(PlotXYDataSource<T>) - Method in interface mgui.interfaces.plots.XYPlot: Set an XY data source for this plot.
setDataSourceDriver(String) - Method in class mgui.interfaces.datasources.DataSourceListDialogPanel
setDataSourceFromUrl(String) - Method in class mgui.interfaces.datasources.DataSourceDialogPanel
setDataSourceFromUrl(String) - Method in class mgui.interfaces.datasources.DataSourceListDialogPanel
setDataSourceFromUrl(String) - Method in class mgui.interfaces.datasources.tinysql.TinySQLDialogPanel
setDataSourceItem(DataSourceItem) - Method in class mgui.interfaces.datasources.DataTableModel
setDatatype(short) - Method in class mgui.io.standard.nifti.Nifti1Dataset: Set the dataset datatype.
setDataType(int) - Method in class mgui.datasources.DataField
setDataType(int) - Method in interface mgui.interfaces.shapes.volume.VolumeMetadata: Sets the data type; must correspond to DataBuffer types.
setDataType(int) - Method in class mgui.io.foreign.fsl.FSLVolumeMetadata
setDataType(int) - Method in class mgui.io.foreign.wunil.WunilDataset
setDataType(int) - Method in class mgui.io.standard.nifti.NiftiMetadata
setDataTypeMap(TypeMap) - Method in class mgui.datasources.DataField
setDatumAtVertex(int, double) - Method in class mgui.interfaces.shapes.InterfaceShape: Sets the datum from the current column at index.
setDatumAtVertex(int, MguiNumber) - Method in class mgui.interfaces.shapes.InterfaceShape: Sets the datum from the current column at index.
setDatumAtVertex(String, int, double) - Method in class mgui.interfaces.shapes.InterfaceShape: Sets the datum from column at index.
setDatumAtVertex(String, int, MguiNumber) - Method in class mgui.interfaces.shapes.InterfaceShape: Sets the datum from column at index.
setDatumAtVoxel(int[], double) - Method in class mgui.interfaces.shapes.Volume3DInt: Sets the datum from the current column at index.
setDatumAtVoxel(int[], MguiNumber) - Method in class mgui.interfaces.shapes.Volume3DInt: Sets the datum from the current column at index.
setDatumAtVoxel(int, int, int, double) - Method in class mgui.interfaces.shapes.Volume3DInt: Sets the datum from the current column at index.
setDatumAtVoxel(int, int, int, MguiNumber) - Method in class mgui.interfaces.shapes.Volume3DInt: Sets the datum from the current column at index.
setDatumAtVoxel(String, int[], double) - Method in class mgui.interfaces.shapes.Volume3DInt: Sets the datum from column at index.
setDatumAtVoxel(String, int[], MguiNumber) - Method in class mgui.interfaces.shapes.Volume3DInt: Sets the datum from column at index.
setDatumAtVoxel(String, int, int, int, double) - Method in class mgui.interfaces.shapes.Volume3DInt: Sets the datum from column at index.
setDatumAtVoxel(String, int, int, int, MguiNumber) - Method in class mgui.interfaces.shapes.Volume3DInt: Sets the datum from column at index.
setDefaultAttributes() - Method in class mgui.interfaces.shapes.LPolygon3DInt
setDefaultColor(int) - Method in class au.edu.unsw.cse.Object3dList
setDefaultColor(int) - Method in class au.edu.unsw.cse.View3d: set a default colour for objects
setDefaultColor(int) - Method in class au.edu.unsw.cse.VRMLState
setDefaultColourMap(ColourMap) - Method in class mgui.interfaces.shapes.InterfaceShape: COLOUR MAP STUFF
setDefaultColourMap(ColourMap, boolean) - Method in class mgui.interfaces.shapes.InterfaceShape
setDefaultEditor(TreeCellEditor) - Method in class mgui.interfaces.trees.InterfaceTreeCellEditor
setDefaultRenderer(TreeCellRenderer) - Method in class mgui.interfaces.trees.InterfaceTreeCellRenderer
setDefaultSpatialUnit(String) - Static method in class mgui.interfaces.InterfaceEnvironment
setDefaultTool(E) - Method in class mgui.interfaces.graphics.InterfaceGraphic
setDefaultTool(E) - Method in interface mgui.interfaces.tools.Toolable
setDefaultTool(Tool2D) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
setDefaultTool(Tool3D) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
setDefaultTool(ToolGraph) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
setDefaultTool(ToolPlot) - Method in class mgui.interfaces.plots.InterfacePlotDisplay
setDefaultTool(Tool) - Method in class mgui.interfaces.InterfaceDisplayPanel
setDefaultUnit(String) - Method in class mgui.interfaces.shapes.ShapeModel3D: Sets the default spatial unit for this model.
setDefaultValue(Object) - Method in class mgui.datasources.DataField
setDelay(double) - Method in class mgui.models.updaters.PulseTrainUpdater.CurrentPulse
setDelay(double) - Method in class mgui.neuro.components.AbstractNeuroComponent
setDelay(double) - Method in class mgui.neuro.updaters.PulseTrainUpdater.CurrentPulse
setDelay(int) - Method in class au.edu.unsw.cse.Object3dList
setDelimiter(String) - Method in class mgui.io.domestic.datasources.ImportDataTableTextLoader
setDendrites(AbstractDendrites) - Method in class mgui.neuro.components.simple.SimpleNeuron
setDendrites(Dendrites) - Method in class mgui.neuro.components.AbstractNeuron
setDendrites(Dendrites) - Method in class mgui.neuro.components.compartments.CompartmentalNeuron
setDendrites(Dendrites) - Method in interface mgui.neuro.components.Neuron
SetDestroyed - mgui.interfaces.shapes.selection.ShapeSelectionEvent.EventType
setDialog(Class<InterfaceIODialogBox>) - Method in class mgui.interfaces.io.InterfaceIOType
setDialogSize(int, int) - Method in class mgui.interfaces.InterfaceDialogBox
setDialogType(String) - Method in class mgui.interfaces.InterfaceDialogBox
setDim(int, float) - Method in class mgui.util.Colour
setDim(int, float) - Method in class mgui.util.Colour3f
setDim(int, float) - Method in class mgui.util.Colour4f
setDims - Variable in class mgui.io.foreign.vol.VolumeInputOptions
setDims(int[]) - Method in class mgui.geometry.Grid3D
setDims(short, short, short, short, short, short, short, short) - Method in class mgui.io.standard.nifti.Nifti1Dataset: Set the dataset dimensions
setDirection(Vector3f) - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
setDisplayPanel(InterfaceDisplayPanel) - Method in class mgui.interfaces.InterfaceWorkspace
setDisplayPanel(InterfaceDisplayPanel) - Method in class mgui.interfaces.shapes.ShapeModel3D
setDisplayPanel(InterfaceDisplayPanel) - Method in class mgui.interfaces.tools.InterfaceTool2DPanel: Deprecated.
setDisplayPanel(InterfaceDisplayPanel) - Method in class mgui.io.domestic.maps.DiscreteColourMapInOptions
setDisplayPanel(InterfaceDisplayPanel) - Method in class mgui.io.domestic.maps.NameMapInOptions
setDisplayPanel(InterfaceDisplayPanel) - Method in class mgui.io.domestic.maps.NameMapOutOptions
setDisplayPanel(InterfaceDisplayPanel) - Method in class mgui.io.domestic.shapes.PointSet2DInputOptions
setDisplayPanel(InterfaceDisplayPanel) - Method in class mgui.io.domestic.shapes.PointSet3DDataInputOptions
setDisplayPanel(InterfaceDisplayPanel) - Method in class mgui.io.domestic.shapes.PointSet3DInputOptions
setDisplayPanel(InterfaceDisplayPanel) - Method in class mgui.io.domestic.shapes.PolygonSet3DInputOptions
setDisplayPanel(InterfaceDisplayPanel) - Method in class mgui.io.domestic.shapes.SurfaceDataOutputOptions
setDisplayPanel(InterfaceDisplayPanel) - Method in class mgui.io.domestic.shapes.SurfaceInputOptions
setDisplayPanel(InterfaceDisplayPanel) - Method in class mgui.io.domestic.shapes.SurfaceOutputOptions
setDisplayPanel(InterfaceDisplayPanel) - Method in class mgui.io.domestic.shapes.VectorSet3DInputOptions
setDisplayPanel(InterfaceDisplayPanel) - Method in class mgui.io.domestic.variables.MatrixOutOptions
setDisplayPanel(InterfaceDisplayPanel) - Method in class mgui.io.foreign.caret.CaretMetricOptions
setDistance(double) - Method in class mgui.interfaces.maps.Camera3D
setDistribution() - Method in class au.edu.unsw.cse.AppletHull
setDoubleValueAtVertex(int, double) - Method in class mgui.interfaces.shapes.VertexDataColumn: Sets the value in this column for the vertex at index
setDrawingEngine(DrawingEngine) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
setDrawMode(int) - Method in class mgui.interfaces.graphics.util.DrawingEngine
setDriver(String) - Method in class mgui.datasources.DataConnection
setDuration(double) - Method in class mgui.models.updaters.PulseTrainUpdater.CurrentPulse
setDuration(double) - Method in class mgui.neuro.updaters.PulseTrainUpdater.CurrentPulse
setEdgeAppearance() - Method in class mgui.interfaces.shapes.Mesh3DInt
setEdgeAppearance() - Method in class mgui.interfaces.shapes.Polygon3DInt
setEdgeAppearance() - Method in class mgui.interfaces.shapes.PolygonSet3DInt
setEdgeAppearance() - Method in class mgui.interfaces.shapes.Vector3DInt
setEdgeAppearance() - Method in class mgui.interfaces.shapes.VectorSet3DInt
setEdges(MeshEdge[]) - Method in class mgui.geometry.mesh.MeshTriangle
setEdgeVariance(Mesh3D, MeshSmoothing.Particle) - Static method in class mgui.geometry.mesh.MeshSmoothing
setEditable(boolean) - Method in class mgui.interfaces.attributes.Attribute
setEditable(boolean) - Method in class mgui.interfaces.attributes.InterfaceAttributePanel
setEditable(boolean) - Method in class mgui.interfaces.io.temp.TempBitmapDrawer
setEditable(boolean) - Method in class mgui.interfaces.variables.VariableInt
setEncoding(String) - Method in class mgui.datasources.postgresql.PostgreSQLDriver: Sets the character encoding for this database; see http://www.postgresql.org/docs/8.1/static/multibyte.html as this applies to PostgreSQL.
setEndRatio(float) - Method in class mgui.interfaces.shapes.Vector2DInt
setEnvironment(HashMap<String, String>) - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary: Sets the system environment for this process
setEnvironment(DynamicModelEnvironment) - Method in class mgui.models.networks.AbstractNetworkModel
setEnvironment(DynamicModelEnvironment) - Method in class mgui.neuro.components.AbstractMotorNeuron
setEnvironment(DynamicModelEnvironment) - Method in class mgui.neuro.components.cortical.AbstractCorticalOutput
setEnvironment(DynamicModelEnvironment) - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalOutput
setEnvironment(DynamicModelEnvironment) - Method in class mgui.neuro.networks.CorticalNetwork
setEnvironment(DynamicModelEnvironment<?>) - Method in interface mgui.models.dynamic.DynamicModel
setEquilateralFacesEM(Mesh3DInt, double, double, double, boolean, boolean) - Static method in class mgui.geometry.mesh.MeshSmoothing: EM = Edge method...
setEquilateralFacesLR(Mesh3D, double, double, int, double, boolean) - Static method in class mgui.geometry.mesh.MeshSmoothing: Uses an energy model to obtain a representation of with triangular faces having maximal equilaterality.
setExcludeToSelection(boolean) - Method in class mgui.interfaces.graphics.InterfaceGraphic
setExcludeToSelection(boolean) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
setExcludeToSelection(boolean) - Method in class mgui.interfaces.shapes.ShapeModel3D
setExclusionFilter(String) - Method in class mgui.interfaces.shapes.ShapeModel3D
setExclusionFilter(ShapeSelectionSet) - Method in class mgui.interfaces.shapes.ShapeModel3D
setExclusionFilter(ShapeSelectionSet, boolean) - Method in class mgui.interfaces.shapes.ShapeModel3D
setExpanded(boolean) - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow.GraphicButton
setFace(Mesh3D.MeshFace3D, int, int) - Method in class mgui.io.foreign.amira.AmiraTractLoader
setFaces(ArrayList<Mesh3D.MeshFace3D>) - Method in class mgui.geometry.Mesh3D
setFactor(double) - Method in class mgui.models.updaters.LinearUpdater
setFields() - Method in class mgui.datasources.DataRecordSet
setFields(ArrayList<DataField>) - Method in class mgui.datasources.DataTable
setFile(File) - Method in class mgui.datasources.DataConnection
setFile(File) - Method in class mgui.interfaces.io.InterfaceFile
setFile(File) - Method in class mgui.io.FileLoader: Sets the current File for this loader.
setFile(File) - Method in class mgui.io.FileWriter
setFile(File) - Method in interface mgui.io.InterfaceIO
setFile(File) - Method in class mgui.io.standard.nifti.NiftiVolumeLoader
setFile(File) - Method in class mgui.io.standard.nifti.NiftiVolumeWriter
setFileFilter(FileFilter) - Method in class mgui.interfaces.gui.FileButton
setFileFilter(FileFilter) - Method in class mgui.interfaces.io.InterfaceFile
setFileLoader(String) - Method in class mgui.interfaces.shapes.InterfaceShape: PERSISTENCE STUFF
setFileLoader(InterfaceIOType) - Method in class mgui.datasources.DataSourceDriver
setFileLoader(InterfaceIOType) - Method in interface mgui.interfaces.io.PersistentObject: Sets the InterfaceIOType associated with this persistent object's loader.
setFileLoader(InterfaceIOType) - Method in class mgui.interfaces.shapes.InterfaceShape
setFileLoader(FileLoader) - Method in class mgui.interfaces.projects.ProjectDataItem
setFilenameForm(String) - Method in class mgui.interfaces.projects.ProjectDataItem
setFiles(File[]) - Method in class mgui.io.DefaultIOOptions
setFiles(File[]) - Method in class mgui.io.domestic.datasources.ExportDataTableOptions
setFiles(File[]) - Method in class mgui.io.domestic.datasources.ImportDataTableOptions
setFiles(File[]) - Method in class mgui.io.domestic.graphs.GraphInputOptions
setFiles(File[]) - Method in class mgui.io.domestic.graphs.GraphOutputOptions
setFiles(File[]) - Method in class mgui.io.domestic.maps.DiscreteColourMapInOptions
setFiles(File[]) - Method in class mgui.io.domestic.maps.DiscreteColourMapOutOptions
setFiles(File[]) - Method in class mgui.io.domestic.maps.NameMapInOptions
setFiles(File[]) - Method in class mgui.io.domestic.maps.NameMapOutOptions
setFiles(File[]) - Method in class mgui.io.domestic.network.CorticalNetworkMatrixInOptions
setFiles(File[]) - Method in class mgui.io.domestic.pipelines.PipelineInputOptions
setFiles(File[]) - Method in class mgui.io.domestic.pipelines.PipelineOutputOptions
setFiles(File[]) - Method in class mgui.io.domestic.shapes.Graph3DOutputOptions
setFiles(File[]) - Method in class mgui.io.domestic.shapes.PointSet2DInputOptions
setFiles(File[]) - Method in class mgui.io.domestic.shapes.PointSet3DDataInputOptions
setFiles(File[]) - Method in class mgui.io.domestic.shapes.PointSet3DInputOptions
setFiles(File[]) - Method in class mgui.io.domestic.shapes.PolygonSet3DInputOptions
setFiles(File[]) - Method in class mgui.io.domestic.shapes.ShapeDataInputOptions
setFiles(File[]) - Method in class mgui.io.domestic.shapes.ShapeInputOptions
setFiles(File[]) - Method in class mgui.io.domestic.shapes.ShapeModel3DInputOptions
setFiles(File[]) - Method in class mgui.io.domestic.shapes.ShapeOutputOptions
setFiles(File[]) - Method in class mgui.io.domestic.shapes.SurfaceDataInputOptions
setFiles(File[]) - Method in class mgui.io.domestic.shapes.SurfaceDataOutputOptions
setFiles(File[]) - Method in class mgui.io.domestic.shapes.SurfaceInputOptions
setFiles(File[]) - Method in class mgui.io.domestic.shapes.SurfaceOutputOptions
setFiles(File[]) - Method in class mgui.io.domestic.shapes.VectorSet3DInputOptions
setFiles(File[]) - Method in class mgui.io.domestic.shapes.VolumeInputOptions
setFiles(File[]) - Method in class mgui.io.domestic.shapes.VolumeOutputOptions
setFiles(File[]) - Method in class mgui.io.domestic.variables.MatrixInOptions
setFiles(File[]) - Method in class mgui.io.domestic.variables.MatrixOutOptions
setFiles(File[]) - Method in class mgui.io.domestic.variables.StringVectorInOptions
setFiles(File[]) - Method in class mgui.io.domestic.videos.ImageStackVideoOptions
setFiles(File[]) - Method in class mgui.io.domestic.views.View3DInputOptions
setFiles(File[]) - Method in class mgui.io.domestic.views.View3DOutputOptions
setFiles(File[]) - Method in class mgui.io.foreign.caret.CaretAreaColourOutputOptions
setFiles(File[]) - Method in class mgui.io.foreign.caret.CaretMetricInOptions
setFiles(File[]) - Method in class mgui.io.foreign.caret.CaretMetricOptions
setFiles(File[]) - Method in class mgui.io.foreign.caret.CaretPaintInOptions
setFiles(File[]) - Method in class mgui.io.foreign.caret.CaretSurfaceInOptions
setFiles(File[]) - Method in class mgui.io.foreign.minc.MincSurfaceDataInOptions
setFiles(File[]) - Method in class mgui.io.foreign.pajek.PajekGraphInputOptions
setFiles(File[]) - Method in class mgui.io.InterfaceIOOptions: Sets the list of files associated with this options instance
setFiles(File[]) - Method in class mgui.io.standard.xml.x3d.Vector3DInputOptions
setFiles(File[]) - Method in class mgui.io.standard.xml.XMLOutputOptions
setFiles(ArrayList<File>, ArrayList<String>) - Method in class mgui.io.domestic.shapes.VolumeInputOptions
setFileWriter(InterfaceIOType) - Method in class mgui.datasources.DataSourceDriver
setFileWriter(InterfaceIOType) - Method in interface mgui.interfaces.io.PersistentObject: Sets the InterfaceIOType associated with this persistent object's writer.
setFileWriter(InterfaceIOType) - Method in class mgui.interfaces.shapes.InterfaceShape
setFileWriter(FileWriter) - Method in class mgui.interfaces.projects.ProjectDataItem
setFillable(boolean) - Method in class mgui.geometry.util.NodeShape: Sets whether this shape should be filled
setFillAppearance() - Method in class mgui.interfaces.shapes.Mesh3DInt
setFillAppearance() - Method in class mgui.interfaces.shapes.PolygonSet3DInt
setFillAppearance() - Method in class mgui.interfaces.shapes.Vector3DInt
setFillAppearance() - Method in class mgui.interfaces.shapes.VectorSet3DInt
setFillColour - Variable in class mgui.io.standard.xml.svg.SVGInputOptions
setFilter(WildcardFileFilter) - Method in class mgui.interfaces.io.InterfaceIOType
setFiringRate() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
setFirstFrame(int) - Method in interface au.edu.unsw.cse.Object3d
setFirstFrame(int) - Method in class au.edu.unsw.cse.Object3dAdaptor
setFirstFrame(int) - Method in class au.edu.unsw.cse.Point3dObject3d
setFixedWidth(int) - Method in class mgui.interfaces.gui.InterfaceComboBoxBak
setFixedWidth(int) - Method in class mgui.util.JMultiLineToolTip
setFlexibleComponent(Component) - Method in class mgui.interfaces.layouts.LineLayout: Sets the flexible component for this layout; this component is stretched vertically when the layout is larger than is total line + gap height, to fill the extra space.
setFlipNormals(boolean) - Method in class mgui.interfaces.shapes.Mesh3DInt
setFlushToMain(boolean) - Method in class mgui.interfaces.plots.sgt.SgtAxis: Sets whether this axis should appear flush with the main opposing axis.
setFont(Font) - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer: Subclassed to map FontUIResources to null.
setFont(Font) - Method in class mgui.interfaces.shapes.Text2DInt
setFormat(int) - Method in class mgui.io.foreign.minc.MincSurfaceDataLoader
setFormat(String) - Method in class mgui.io.domestic.shapes.SurfaceDataFileWriter
setFormat(String) - Method in class mgui.io.domestic.shapes.SurfaceFileWriter
setFormat(String) - Method in class mgui.io.domestic.shapes.VolumeInputDialogBox
setFormat(String) - Method in class mgui.io.domestic.variables.MatrixFileWriter
setFormat(String) - Method in class mgui.io.foreign.caret.CaretPaintWriter
setFormat(String) - Method in class mgui.io.foreign.minc.MincSurfaceDataWriter
setFormat(FreesurferVertexDataInOptions.Format) - Method in class mgui.io.foreign.freesurfer.FreesurferVertexDataInOptions
setFrame(InterfaceFrame) - Static method in class mgui.interfaces.InterfaceEnvironment
setFrameNo(int) - Method in class au.edu.unsw.cse.View3d: set the frame no
setFrameNo(int) - Method in class au.edu.unsw.cse.Viewer: this sets the frame no in the AnimationWidget
setFrom(ExportDataTableOptions) - Method in class mgui.io.domestic.datasources.ExportDataTableOptions
setFrom(VolumeInputOptions) - Method in class mgui.io.domestic.shapes.VolumeInputOptions
setFrom(Volume4DInputOptions) - Method in class mgui.io.foreign.vol.Volume4DInputOptions
setFrom(VolumeInputOptions) - Method in class mgui.io.foreign.vol.VolumeInputOptions
setFromAttribute(Attribute<V>) - Method in class mgui.interfaces.attributes.Attribute
setFromAttribute(Attribute<V>, boolean) - Method in class mgui.interfaces.attributes.Attribute
setFromBasisTransform(Matrix4f, float, float, float) - Method in class mgui.geometry.Box3D: Sets the axes and origin from the specified matrix T, and the three dimensions
setFromBox(Box3D) - Method in class mgui.geometry.Box3D
setFromCamera(Camera3D) - Method in class mgui.interfaces.graphics.util.Axes3D
setFromCamera(Camera3D) - Method in class mgui.interfaces.maps.Camera3D: Sets this camera from camera.
setFromCamera(Camera3D, boolean, boolean) - Method in class mgui.interfaces.maps.Camera3D
setFromColourModel(WindowedColourModel) - Method in class mgui.image.util.WindowedColourModel
setFromComplementaryOptions(InterfaceIOOptions) - Method in class mgui.io.domestic.shapes.SurfaceInputOptions
setFromComplementaryOptions(InterfaceIOOptions) - Method in class mgui.io.domestic.shapes.VolumeInputOptions
setFromComplementaryOptions(InterfaceIOOptions) - Method in class mgui.io.domestic.shapes.VolumeOutputOptions
setFromComplementaryOptions(InterfaceIOOptions) - Method in class mgui.io.InterfaceIOOptions: Sets the values of this object from those of options, defined for its complementary I/O interface.
setFromDataSource(DataSource) - Method in class mgui.datasources.DataSource: Sets this data source from an existing source.
setFromDirectory(ProjectDirectory) - Method in class mgui.interfaces.projects.ProjectDirectory
setFromEdge(AbstractGraphEdge) - Method in class mgui.interfaces.graphs.AbstractGraphEdge
setFromFile(File) - Method in class mgui.datasources.DataConnection
setFromFile(String) - Method in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions: Sets the parameters from a parameter file, which is a text file where parameters are specified by the form:
setFromGraph(InterfaceAbstractGraph) - Method in class mgui.interfaces.graphs.DefaultGraph
setFromGrid(Grid3D) - Method in class mgui.geometry.Grid3D
setFromMap(ContinuousColourMap) - Method in class mgui.interfaces.maps.ContinuousColourMap: Set this map from map.
setFromMesh(Mesh3D) - Method in class mgui.geometry.Mesh3D: Set this mesh from another mesh.
setFromMetadata(VolumeMetadata) - Method in interface mgui.interfaces.shapes.volume.VolumeMetadata: Sets this metadata from another metadata object.
setFromMetadata(VolumeMetadata) - Method in class mgui.io.foreign.fsl.FSLVolumeMetadata
setFromMetadata(VolumeMetadata) - Method in class mgui.io.foreign.wunil.WunilDataset
setFromMetadata(VolumeMetadata) - Method in class mgui.io.standard.nifti.NiftiMetadata
setFromMetaData() - Method in class mgui.datasources.DataTableSet: Sets this table set from the information contained in its data source's metadata.
setFromMetaData(boolean) - Method in class mgui.datasources.DataTableSet: Sets this table set from the information contained in its data source's metadata.
setFromModel(ShapeModel3D) - Method in class mgui.io.domestic.shapes.ShapeModel3DOutputDialog.TableModel: Set defaults from an existing model
setFromModel(ShapeModel3D) - Method in class mgui.io.domestic.shapes.ShapeModel3DOutputOptions: Set this options from the given model, resetting all values
setFromModel(ShapeModel3D, boolean) - Method in class mgui.io.domestic.shapes.ShapeModel3DOutputOptions: Set this options from the given model, resetting if necessary
setFromNetwork(AbstractNetwork) - Method in class mgui.graphs.networks.AbstractNetworkGraph
setFromNetwork(AbstractNetwork) - Method in class mgui.neuro.graphs.CorticalNetworkGraph
setFromNetwork(AbstractNeuralNet) - Method in class mgui.neuro.graphs.NeuralNetGraph
setFromNodes(AbstractGraphNode, AbstractGraphNode) - Method in class mgui.interfaces.graphs.AbstractGraphEdge
setFromOptions(InterfacePlotOptions<?>) - Method in class mgui.interfaces.plots.InterfacePlot: Sets up this plot object from options.
setFromOptions(InterfacePlotOptions<?>) - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlot
setFromOptions(InterfacePlotOptions<?>) - Method in class mgui.interfaces.plots.sgt.SgtScatterplot
setFromOptions(ShapeModel3DOutputOptions) - Method in class mgui.io.domestic.shapes.ShapeModel3DOutputDialog.TableModel: Set values from an existing instance of ShapeModel3DOutputOptions
setFromOptions(ShapeModel3DOutputOptions) - Method in class mgui.io.domestic.shapes.ShapeModel3DOutputOptions
setFromParamaterInstance(TaskParameterInstance) - Method in class mgui.pipelines.TaskParameterInstance
setFromPointSet(PointSet3D) - Method in class mgui.geometry.PointSet3D
setFromProcess(PipelineProcess) - Method in class mgui.pipelines.JavaProcess
setFromProcess(PipelineProcess) - Method in class mgui.pipelines.NativeProcess
setFromProcess(PipelineProcess) - Method in class mgui.pipelines.PipelineProcess
setFromProcessInstance(PipelineProcessInstance) - Method in class mgui.pipelines.PipelineProcessInstance
setFromProject(InterfaceProject) - Method in class mgui.interfaces.projects.InterfaceProject: Sets this project from another project.
setFromRadialRepresentation(RadialRepresentation) - Method in class mgui.morph.sections.RadialRep2D
setFromSectionSet(SectionSet3DInt) - Method in class mgui.interfaces.shapes.SectionSet3DInt
setFromSectionSet(SectionSet3DInt) - Method in class mgui.morph.sections.MorphSections3DInt
setFromSectionSet(SectionSet3DInt, int) - Method in class mgui.interfaces.shapes.util.ClipPlane
setFromSelectionSet(ShapeSelectionSet) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet: Sets this set's selection to those in set.
setFromSelectionSet(ShapeSelectionSet, boolean) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet: Sets this set's selection to those in set.
setFromShape(InterfaceShape) - Method in class mgui.interfaces.shapes.queries.InterfaceShapeQuery
setFromShape(InterfaceShape) - Method in class mgui.interfaces.shapes.queries.ShapeSummaryQuery
setFromShape2D(Shape2DInt) - Method in class mgui.interfaces.shapes.queries.InterfaceShapeQuery
setFromShape3D(Shape3DInt) - Method in class mgui.interfaces.shapes.queries.InterfaceShapeQuery
setFromTask(VideoTask) - Method in class mgui.interfaces.attributes.video.AttributeObjectVideoTask
setFromTask(VideoTask) - Method in class mgui.interfaces.graphics.video.RotateView3DTask
setFromTask(VideoTask) - Method in class mgui.interfaces.graphics.video.SetView3DTask
setFromTask(VideoTask) - Method in class mgui.interfaces.graphics.video.VideoTask
setFromTask(VideoTask) - Method in class mgui.interfaces.shapes.video.ChangeSectionVideoTask
setFromVertexDataColumn(VertexDataColumn) - Method in class mgui.interfaces.shapes.VertexDataColumn: Set this data column to match the values, limits, and colour map of column.
setFromVertexDataColumn(VertexDataColumn) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
setFromVolume(Volume3DInt) - Method in class mgui.interfaces.shapes.volume.Volume3DTexture: Set this volume from the specified grid.
setFromVolume(Volume3DInt) - Method in interface mgui.interfaces.shapes.volume.VolumeMetadata: Sets this metadata from volume.
setFromVolume(Volume3DInt) - Method in class mgui.io.foreign.fsl.FSLVolumeMetadata
setFromVolume(Volume3DInt) - Method in class mgui.io.foreign.wunil.WunilDataset
setFromVolume(Volume3DInt) - Method in class mgui.io.standard.nifti.NiftiMetadata
setFromVolume(Volume3DInt) - Method in class mgui.io.standard.nifti.NiftiVolumeWriter
setFromVolume(Volume3DInt, boolean) - Method in class mgui.interfaces.shapes.volume.Volume3DTexture: Set this volume from the specified grid.
setFromVolume(Volume3DInt, String) - Method in interface mgui.interfaces.shapes.volume.VolumeMetadata: Sets this metadata from grid, for the specified column.
setFromVolume(Volume3DInt, String) - Method in class mgui.io.foreign.fsl.FSLVolumeMetadata
setFromVolume(Volume3DInt, String) - Method in class mgui.io.foreign.wunil.WunilDataset
setFromVolume(Volume3DInt, String) - Method in class mgui.io.standard.nifti.NiftiMetadata
setG_Ca(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setG_K(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setG_L(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setG_Na(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setGeneral() - Method in class mgui.interfaces.shapes.volume.VolumeMaskDialog_old
setGeneralPanel(VolumeMaskDialog_old.VolumeMaskPanel) - Method in class mgui.interfaces.shapes.volume.VolumeMaskDialog_old
setGeom - Variable in class mgui.io.foreign.vol.VolumeInputOptions
setGeomDims(float[]) - Method in interface mgui.interfaces.shapes.volume.VolumeMetadata: Sets the geometric dimensions
setGeomDims(float[]) - Method in class mgui.io.foreign.fsl.FSLVolumeMetadata
setGeomDims(float[]) - Method in class mgui.io.foreign.wunil.WunilDataset
setGeomDims(float[]) - Method in class mgui.io.standard.nifti.NiftiMetadata
setGeomDims(float, float, float) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
setGeometry(Shape) - Method in class mgui.interfaces.shapes.InterfaceShape: Sets the Shape associated with this object.
setGeometry(Shape) - Method in class mgui.interfaces.shapes.Shape2DInt
setGeometry(Shape) - Method in class mgui.interfaces.shapes.Shape3DInt
setGeometryFromRect(Rect3D) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
setGraph(Graph2D) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt
setGraph(Graph3D) - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
setGraph(InterfaceAbstractGraph) - Method in class mgui.geometry.Graph2D
setGraph(InterfaceAbstractGraph) - Method in class mgui.geometry.Graph3D
setGraph(InterfaceAbstractGraph) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
setGraphic2DPopupMenu(InterfacePopupMenu) - Method in class mgui.interfaces.shapes.Shape2DInt: Subclasses should override this if necessary and call super.getGraphic3DPopupMenu() to get this top-level menu and add items to it.
setGraphic3D(InterfaceGraphic3D) - Method in class mgui.interfaces.graphics.InterfaceCanvas3D
setGraphic3DPopupMenu(InterfacePopupMenu) - Method in class mgui.interfaces.shapes.Mesh3DInt
setGraphic3DPopupMenu(InterfacePopupMenu) - Method in class mgui.interfaces.shapes.Shape3DInt: Subclasses should override this if necessary and call super.getGraphic3DPopupMenu() to get this top-level menu and add items to it.
setGraphics(Graphics, int, int) - Method in class au.edu.unsw.cse.View3d: set Graphics object to draw in
setGraphics(Graphics, int, int) - Method in class au.edu.unsw.cse.Viewer
setGraphics2D(Graphics2D) - Method in class mgui.interfaces.graphics.util.DrawingEngine
setGraphLayout(String) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
setGreen(float) - Method in class mgui.util.Colour
setGreen(float) - Method in class mgui.util.Colour3f
setGreen(float) - Method in class mgui.util.Colour4f
setGreen(int) - Method in class mgui.util.Colour
setGreen(int) - Method in class mgui.util.Colour1f
setGreen(int) - Method in class mgui.util.Colour2f
setGrid(Grid3D) - Method in class mgui.interfaces.shapes.volume.VolumeMaskUpdater
setGrid(Grid3D) - Method in class mgui.interfaces.shapes.Volume3DInt
setGrid(Grid3D, boolean) - Method in class mgui.interfaces.shapes.Volume3DInt
setGrid3D(Grid3D) - Method in class mgui.io.foreign.interfile.InterfileLoader
setHasAlpha(boolean) - Method in class mgui.image.util.WindowedColourModel
setHasInput(boolean) - Method in class mgui.pipelines.PipelineProcessInstance
setHeader() - Method in class mgui.io.foreign.interfile.InterfileLoader
setHeaderFilename(String) - Method in class mgui.io.foreign.wunil.WunilDataset
setHeaderFilename(String) - Method in class mgui.io.standard.nifti.Nifti1Dataset: Set the filename for the dataset header file
setHeight() - Method in class mgui.interfaces.layouts.CategoryLayout
setHeight(float) - Method in class mgui.interfaces.layouts.LayoutItem: Sets the width of this item, in document units.
setHelpParameter(String) - Method in class mgui.pipelines.PipelineProcess: Sets the parameter which is used to show a help message for this process.
setHemispheres(CorticalHemisphereSet3DInt, CorticalHemisphereSet3DInt) - Method in class mgui.interfaces.shapes.neuro.CorticalSurfaceSet3DInt
setHemispheres(CorticalHemisphereSet3DInt, CorticalHemisphereSet3DInt, boolean) - Method in class mgui.interfaces.shapes.neuro.CorticalSurfaceSet3DInt
setHighLimit(double) - Method in class mgui.models.dynamic.functions.HardLimitFunction
setHistogram(boolean) - Method in class mgui.interfaces.shapes.InterfaceShapesPanel
setHistogram(boolean) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
setHistogram(Histogram) - Method in class mgui.interfaces.stats.HistogramPlot
setHistogramBlocking() - Method in class mgui.interfaces.shapes.InterfaceShapesPanel
setHome(View3dInfo) - Method in class au.edu.unsw.cse.Viewer
setI_delta(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setIcon() - Method in class mgui.interfaces.graphics.util.Axes3D
setIcon() - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
setIcon() - Method in class mgui.interfaces.maps.Camera3D
setIcon() - Method in class mgui.interfaces.plots.InterfacePlot
setIcon() - Method in class mgui.interfaces.shapes.InterfaceShape
setIcon() - Method in class mgui.interfaces.shapes.Mesh3DInt
setIcon() - Method in class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt
setIcon() - Method in class mgui.interfaces.shapes.neuro.CorticalSurfaceSet3DInt
setIcon() - Method in class mgui.interfaces.shapes.PointSet2DInt
setIcon() - Method in class mgui.interfaces.shapes.PointSet3DInt
setIcon() - Method in class mgui.interfaces.shapes.Polygon2DInt
setIcon() - Method in class mgui.interfaces.shapes.Polygon3DInt
setIcon() - Method in class mgui.interfaces.shapes.SectionSet3DInt
setIcon() - Method in class mgui.interfaces.shapes.Shape2DInt
setIcon() - Method in class mgui.interfaces.shapes.Shape3DInt
setIcon() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
setIcon() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
setIcon() - Method in class mgui.interfaces.shapes.Vector3DInt
setIcon() - Method in class mgui.interfaces.shapes.VectorSet3DInt
setIcon() - Method in class mgui.interfaces.shapes.Volume3DInt
setIcon() - Method in class mgui.interfaces.tools.dialogs.DialogTool
setIcon() - Method in class mgui.interfaces.tools.graphics.Tool2D
setIcon() - Method in class mgui.interfaces.tools.graphics.Tool3D
setIcon() - Method in class mgui.interfaces.tools.graphics.ToolDZoom2D
setIcon() - Method in class mgui.interfaces.tools.graphics.ToolMouseOrbit3D
setIcon() - Method in class mgui.interfaces.tools.graphs.ToolGraph
setIcon() - Method in class mgui.interfaces.tools.shapes.ToolCreateEllipse2D
setIcon() - Method in class mgui.interfaces.tools.shapes.ToolCreateMeshFromPolylines
setIcon() - Method in class mgui.interfaces.tools.shapes.ToolCreatePolygon2D
setIcon() - Method in class mgui.interfaces.tools.shapes.ToolCutMeshWithPlane
setIcon() - Method in class mgui.interfaces.tools.shapes.ToolRuler2D
setIcon() - Method in class mgui.interfaces.tools.shapes.util.RulerDialog
setID(long) - Method in class mgui.interfaces.shapes.InterfaceShape
setID(long) - Method in interface mgui.models.dynamic.DynamicModelComponent
setID(long) - Method in class mgui.neuro.components.AbstractNeuroComponent
setID(long, boolean) - Method in interface mgui.models.dynamic.DynamicModelComponent
setID(long, boolean) - Method in class mgui.neuro.components.AbstractNeuroComponent
setImage(BufferedImage) - Method in class mgui.interfaces.shapes.Image2DInt
setImage(BufferedImage) - Method in class mgui.interfaces.shapes.Image3DInt
setImage(BufferedImage, boolean) - Method in class mgui.interfaces.shapes.Image3DInt
setImage(BufferedImage, int) - Method in class mgui.interfaces.shapes.TestTextureInt
setImgOrigin(float, float, float) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
setIndeterminate(boolean) - Method in class mgui.interfaces.gui.AbstractProgressUpdater
setIndeterminate(boolean) - Method in class mgui.interfaces.gui.InterfaceProgressBar
setIndeterminate(boolean) - Method in interface mgui.interfaces.ProgressUpdater: Sets whether this progress updater should be considered indeterminate; i.e., progress cannot be estimated.
setIndex(int) - Method in interface mgui.models.dynamic.DynamicModelEnvironmentSensor
setIndex(int) - Method in interface mgui.models.dynamic.DynamicModelOutputEvent
setIndex(int) - Method in class mgui.models.environments.AbstractEnvironmentDataSource
setIndex(int) - Method in class mgui.models.updaters.PulseTrainUpdater.CurrentPulse
setIndex(int) - Method in class mgui.neuro.components.cortical.AbstractCorticalInput
setIndex(int) - Method in class mgui.neuro.components.cortical.AbstractCorticalOutput
setIndex(int) - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalOutput
setIndex(int) - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalOutputEvent
setIndex(int) - Method in class mgui.neuro.components.simple.SimpleMotorNeuron
setIndex(int) - Method in class mgui.neuro.components.simple.SimpleMotorNeuronEvent
setIndex(int) - Method in class mgui.neuro.components.simple.SimpleSensoryNeuron
setIndex(int) - Method in class mgui.neuro.updaters.PulseTrainUpdater.CurrentPulse
setIndices(int, int, int) - Method in class mgui.geometry.Mesh3D.MeshFace3D
setInitFile(String) - Static method in class mgui.interfaces.InterfaceEnvironment
setInitializer(Transformer<V, Point3f>) - Method in class mgui.interfaces.graphs.layouts.Coordinate3DLayout
setInitListener(InitListener) - Method in class mgui.interfaces.startup.InitFrame
setInput(double) - Method in class mgui.neuro.components.cortical.AbstractCorticalInput
setInput(double) - Method in class mgui.neuro.components.cortical.functions.CorticalFunction
setInput(double) - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalInputEvent
setInputChannel(String) - Method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
setInputFile(String) - Method in class mgui.io.DataFileInterface: Deprecated.
setInputFile(String) - Method in class mgui.pipelines.PipelineProcessInstance: Sets the path of the output file associated with this process.
setInputFiles(File[]) - Method in class mgui.interfaces.io.InterfaceFilePanel
setInputFunction(Function) - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
setInputMap2(int, InputMap) - Method in class mgui.interfaces.trees.InterfaceTreeCellRenderer
setInputName(int, String) - Method in interface mgui.models.dynamic.DynamicModelEnvironment
setInputName(int, String) - Method in class mgui.models.environments.SimpleEnvironment
setInputNames(List<String>) - Method in interface mgui.models.dynamic.DynamicModelEnvironment
setInputNames(List<String>) - Method in class mgui.models.environments.SimpleEnvironment
setInputOp(String) - Method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
setInputOpList(JComboBox) - Static method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
setInputParameter(String) - Method in class mgui.pipelines.PipelineProcess: Sets the parameter which is used to determine the input file for this process.
setInputSize(int) - Method in interface mgui.models.dynamic.DynamicModelEnvironment
setInputSize(int) - Method in class mgui.models.environments.SimpleEnvironment
setInputState(double[]) - Method in class mgui.models.environments.SimpleEnvironment
setInputStream(DataInputStream<MguiDouble>) - Method in class mgui.interfaces.plots.osp.InterfaceStripChart
setInputStream(DataInputStream<T>) - Method in class mgui.interfaces.plots.InterfacePlot
setInputType(String) - Method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
setInputType(InterfaceIO) - Method in class mgui.io.domestic.shapes.VolumeInputOptions
setInputTypeList(JComboBox) - Static method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
setInsets(Insets) - Method in class mgui.interfaces.gui.InterfaceComboBox
setInstance(int) - Method in class mgui.pipelines.PipelineProcessInstance
setInstanceDir(String) - Method in class mgui.interfaces.projects.InterfaceProject
setInstancePrefix(String) - Method in class mgui.interfaces.projects.InterfaceProject
setInstances() - Method in class mgui.interfaces.projects.InterfaceProject
setInstances(ArrayList<ProjectInstance>) - Method in class mgui.interfaces.projects.InterfaceProject
setInstancesFromNames(ArrayList<String>) - Method in class mgui.interfaces.projects.InterfaceProject
setInstanceSuffix(String) - Method in class mgui.interfaces.projects.InterfaceProject
setIntensity(float) - Method in class mgui.util.Colour
setIntensity(float) - Method in class mgui.util.Colour4f
setIntensity(int) - Method in class mgui.util.Colour
setIntensity(int) - Method in class mgui.util.Colour1f
setIntensity(int) - Method in class mgui.util.Colour2f
setIntensity(int) - Method in class mgui.util.Colour3f
setIntercept(double) - Method in class mgui.image.util.WindowedColourModel
setInterfaceFile(InterfaceFile) - Method in class mgui.interfaces.gui.FileButton
setInterfaceType(int) - Method in class mgui.interfaces.graphics.InterfaceGraphic2DTextBox
setInterfaceType(int) - Method in class mgui.interfaces.shapes.Text2DIntMouseCoords
setIntersection(List<Attribute<?>>, boolean) - Method in class mgui.interfaces.attributes.AttributeList: Set any attributes which intersect with the passed list.
setIntersection(AttributeList) - Method in class mgui.interfaces.attributes.AttributeList: Set any attributes which intersect with the passed list.
setIntersection(AttributeList, boolean) - Method in class mgui.interfaces.attributes.AttributeList: Set any attributes which intersect with the passed list.
setInvertClip(boolean) - Method in class mgui.interfaces.shapes.SectionSet3DInt
setIO(Class<InterfaceIO>) - Method in class mgui.interfaces.io.InterfaceIOType
setIOObjects(ArrayList<InterfaceObject>) - Method in class mgui.interfaces.io.InterfaceIODialogBox: Explicitly set the objects available for I/O.
setIOObjects(ArrayList<InterfaceObject>) - Method in class mgui.io.domestic.shapes.ShapeOutputDialogBox
setIOPanel(InterfaceIOPanel) - Method in class mgui.interfaces.io.InterfaceIODialogBox
setIsCached(boolean) - Method in class mgui.interfaces.datasources.DataTableModel
setIsEditable(boolean) - Method in class mgui.datasources.DataField
setIsEnabled(boolean) - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
setIsKeyField(boolean) - Method in class mgui.datasources.DataField
setIsMajor(boolean) - Method in class mgui.interfaces.graphics.Graphic2DGrid
setIsRequired(boolean) - Method in class mgui.datasources.DataField
setIsSolidColour(boolean) - Method in class mgui.image.util.WindowedColourModel
setIsSolidColour(boolean) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn: Sets whether this column should be rendered as a solid colour (for values > 0).
setIsUnique(boolean) - Method in class mgui.datasources.DataField
setIsVisible(boolean) - Method in class mgui.interfaces.graphics.Graphic2DGrid
setK(double) - Method in class mgui.models.dynamic.functions.SigmoidFunction
setKeyField(String) - Method in class mgui.datasources.DataTable
setKeyInputVal(int) - Method in class mgui.interfaces.tools.ToolInputEvent
setLabel(String) - Method in class mgui.datasources.DataField
setLabel(String) - Method in class mgui.interfaces.graphs.AbstractGraphEdge
setLabel(String) - Method in class mgui.interfaces.graphs.AbstractGraphNode
setLabel(String) - Method in class mgui.interfaces.io.InterfaceIOType
setLabel(String) - Method in class mgui.interfaces.plots.sgt.SgtAxis: Set the label for the axis.
setLabelColour(Color) - Method in class mgui.interfaces.graphics.Graphic2DGrid
setLabelColour(Color) - Method in class mgui.interfaces.shapes.InterfaceShape
setLabelColour(Color) - Method in class mgui.interfaces.shapes.Shape2DInt
setLabelColour(Color) - Method in class mgui.interfaces.shapes.Shape3DInt
setLabelFont(Font) - Method in class mgui.interfaces.shapes.InterfaceShape
setLabelFont(Font) - Method in class mgui.interfaces.shapes.Shape2DInt
setLabelFont(Font) - Method in class mgui.interfaces.shapes.Shape3DInt
setLabels(Vector) - Method in class au.edu.unsw.cse.Points3d
setLabelScale(float) - Method in class mgui.interfaces.shapes.InterfaceShape
setLabelScale(float) - Method in class mgui.interfaces.shapes.Shape2DInt
setLabelScale(float) - Method in class mgui.interfaces.shapes.Shape3DInt
setLabelSize(int) - Method in class mgui.interfaces.graphics.Graphic2DGrid
setLabelX(String) - Method in class mgui.interfaces.plots.osp.InterfacePlotOsp
setLabelX(String) - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout: Set the label for the X axis.
setLabelY(String) - Method in class mgui.interfaces.plots.osp.InterfacePlotOsp
setLabelY(String) - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout: Set the label for the Y axis.
setLastFrame(int) - Method in class au.edu.unsw.cse.AnimationWidget
setLastFrame(int) - Method in interface au.edu.unsw.cse.Object3d
setLastFrame(int) - Method in class au.edu.unsw.cse.Object3dAdaptor
setLastFrame(int) - Method in class au.edu.unsw.cse.Point3dObject3d
setLastFrame(int) - Method in class au.edu.unsw.cse.View3d: set the last frame no
setLayout() - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
setLayout(SgtPlotLayout<T, ?, ?>) - Method in class mgui.interfaces.plots.sgt.InterfacePlotSgt
setLeafIcon(Icon) - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer: Sets the icon used to represent leaf nodes.
setLeft(CorticalHemisphereSet3DInt) - Method in class mgui.interfaces.shapes.neuro.CorticalSurfaceSet3DInt
setLength(int) - Method in class mgui.datasources.DataField
setLevels(ArrayList<String>) - Method in class mgui.interfaces.projects.ProjectInstanceGroup
setLibrary(PipelineProcessLibrary) - Method in class mgui.pipelines.PipelineProcess
setLightDirection(Point3d) - Method in class au.edu.unsw.cse.View3d: set direction of light source
setLimits() - Method in class mgui.stats.Histogram
setLimits(double[]) - Method in class mgui.image.util.WindowedColourModel: Set the window from limits.
setLimits(double, double) - Method in class mgui.image.util.WindowedColourModel: Set the window from limits.
setLineColour - Variable in class mgui.io.standard.xml.svg.SVGInputOptions
setLineOfSight(float, float, float) - Method in class mgui.interfaces.maps.Camera3D
setLineOfSight(Vector3d) - Method in class mgui.interfaces.maps.Camera3D
setLineStyle(Stroke) - Method in class mgui.interfaces.shapes.InterfaceShape: Returns the line/edge style for this shape.
setLineStyle(Stroke) - Method in class mgui.interfaces.shapes.Shape2DInt
setLineStyle(Stroke) - Method in class mgui.interfaces.shapes.Shape3DInt
setList(ArrayList) - Method in class mgui.interfaces.InterfaceListPanel
setList(ArrayList<V>) - Method in class mgui.interfaces.attributes.AttributeSelection
setListen(boolean) - Method in class mgui.interfaces.maps.Camera3D
setListWidth(int) - Method in class mgui.interfaces.gui.VariableComboBox
setLive(boolean) - Method in class mgui.interfaces.shapes.Shape3DInt: Sets the live status of this shape's scene 3D object node.
setLoaderOptions(InterfaceIOOptions) - Method in class mgui.datasources.DataSourceDriver
setLoaderOptions(InterfaceIOOptions) - Method in interface mgui.interfaces.io.PersistentObject: Sets the options used to last load this object; can be null.
setLoaderOptions(InterfaceIOOptions) - Method in class mgui.interfaces.shapes.InterfaceShape
setLocale(Locale) - Static method in class mgui.interfaces.InterfaceEnvironment: Sets the locale of this environment.
setLocation(double, double) - Method in class mgui.interfaces.plots.sgt.SgtAxis: Sets the origin of this axis, in physical coordinates.
setLocation(SoTPoint) - Method in class mgui.interfaces.plots.sgt.SgtAxis: Sets the origin of this axis, in physical coordinates.
setLocation(Point2D.Float) - Method in class mgui.interfaces.layouts.LayoutItem: Sets the upper-left corner of this item, in document space.
setLocation(Point3f) - Method in class mgui.interfaces.graphs.AbstractGraphNode: Sets the static location of this node.
setLocation(Point3f) - Method in class mgui.neuro.components.cortical.AbstractCorticalRegion
setLockTask(String) - Method in class mgui.interfaces.InterfaceEnvironment: Attempts to lock the environment with the specified task.
setLogger(String) - Method in class mgui.pipelines.PipelineProcess
setLogger(String) - Method in class mgui.pipelines.PipelineProcessInstance
setLoggingType(LoggingType) - Static method in class mgui.interfaces.InterfaceEnvironment
setLogin(String) - Method in class mgui.datasources.DataConnection
setLogin(String) - Method in class mgui.datasources.DataSourceDriver
setLookAndFeel(String) - Static method in class mgui.interfaces.InterfaceEnvironment
setLowIsTransparent(boolean) - Method in class mgui.image.util.WindowedColourModel
setLowLimit(double) - Method in class mgui.models.dynamic.functions.HardLimitFunction
setMainClass(String) - Method in class mgui.pipelines.JavaProcess
setMainLayout(LayoutManager) - Method in class mgui.interfaces.InterfaceDialogBox
setMainPanel(JPanel) - Method in class mgui.interfaces.InterfaceDialogBox
setMap(ContinuousColourMap) - Method in class mgui.interfaces.maps.ContinuousColourBar
setMap(DiscreteColourMap) - Method in class mgui.interfaces.maps.DiscreteColourMapTable
setMap(Map) - Method in interface mgui.interfaces.graphics.GraphicMouseListener
setMap(Map) - Method in class mgui.interfaces.graphics.InterfaceGraphic
setMap(Map) - Method in class mgui.interfaces.graphics.InterfaceGraphic2DTextBox
setMap(Map) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
setMap(Map) - Method in class mgui.interfaces.graphics.InterfaceGraphicTextBox
setMap(Map) - Method in class mgui.interfaces.InterfaceSelectionPanel
setMap(Map) - Method in class mgui.interfaces.queries.InterfaceQueryPanel
setMap(Map) - Method in class mgui.interfaces.shapes.selection.InterfaceSelectionSet
setMap(Map) - Method in class mgui.interfaces.shapes.Text2DIntMouseCoords
setMap(Map2D) - Method in interface mgui.interfaces.graphics.Graphic2DMouseListener
setMap(Map2D) - Method in class mgui.interfaces.graphics.util.DrawingEngine
setMap3D(Map3D) - Method in class mgui.interfaces.tools.ToolBehavior3DAdapter
setMapIdxToParent(HashMap<Integer, Integer>) - Method in class mgui.interfaces.shapes.Shape2DInt
setMapMax(float) - Method in class mgui.interfaces.shapes.Volume3DInt
setMapMin(float) - Method in class mgui.interfaces.shapes.Volume3DInt
setMappings(ArrayList<MguiNumber>) - Method in class mgui.interfaces.neuro.InterfaceNeuroAtlas
setMaps(ArrayList<MappedPolygon2D>) - Method in class mgui.morph.sections.MappedPolygon2DPath
setMapType(int) - Method in class mgui.interfaces.shapes.Text2DIntMouseCoords
setMask(String, boolean) - Method in class mgui.interfaces.shapes.Volume3DInt
setMask(String, boolean[][][]) - Method in class mgui.interfaces.shapes.Volume3DInt
setMaskApplied(String, boolean) - Method in class mgui.interfaces.shapes.Volume3DInt
setMaskPanel(String) - Method in class mgui.interfaces.shapes.volume.VolumeMaskDialog_old
setMaskShape(String) - Method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
setMaskShapeList(JComboBox) - Static method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
setMatrices(Matrix[]) - Method in class mgui.io.domestic.variables.MatrixOutOptions
setMatrix(Matrix) - Method in class mgui.interfaces.plots.mgui.MatrixImagePlot
setMax - Variable in class mgui.io.foreign.vol.VolumeInputOptions
setMax(double) - Method in class mgui.interfaces.graphics.Graphic2DGrid
setMaximum(int) - Method in class mgui.interfaces.gui.AbstractProgressUpdater
setMaximum(int) - Method in class mgui.interfaces.gui.InterfaceProgressBar: Sets the maximum for this progress bar.
setMaximum(int) - Method in interface mgui.interfaces.ProgressUpdater
setMesh(Mesh3D) - Method in class mgui.geometry.mesh.MeshEdgeSet
setMesh(Mesh3D) - Method in class mgui.interfaces.shapes.Mesh3DInt
setMeshConstraints(Mesh3DInt, ArrayList<Point3f>) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
setMeshes(Mesh3DInt, Mesh3DInt, Mesh3DInt) - Method in class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt
setMeshes(Mesh3DInt, Mesh3DInt, Mesh3DInt, boolean) - Method in class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt
setMeshGM(Mesh3DInt) - Method in class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt
setMeshGM(Mesh3DInt, boolean) - Method in class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt
setMeshMiddle(Mesh3DInt) - Method in class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt
setMeshMiddle(Mesh3DInt, boolean) - Method in class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt
setMeshWM(Mesh3DInt) - Method in class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt
setMeshWM(Mesh3DInt, boolean) - Method in class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt
setMessage(String) - Method in class mgui.interfaces.gui.AbstractProgressUpdater
setMessage(String) - Method in class mgui.interfaces.gui.InterfaceProgressBar: Sets this progress bar's message.
setMessage(String) - Method in interface mgui.interfaces.ProgressUpdater: Sets the message for this progress updater
setMidLimit(double) - Method in class mgui.models.dynamic.functions.HardLimitFunction
setMin(double) - Method in class mgui.interfaces.graphics.Graphic2DGrid
setMinDistance(double) - Method in class mgui.interfaces.maps.Camera3D
setMinimum(int) - Method in class mgui.interfaces.gui.AbstractProgressUpdater
setMinimum(int) - Method in class mgui.interfaces.gui.InterfaceProgressBar: Sets the maximum for this progress bar.
setMinimum(int) - Method in interface mgui.interfaces.ProgressUpdater
setMode(int) - Method in class mgui.interfaces.tools.shapes.ToolSelectShape2D
setMode(int) - Method in class mgui.interfaces.tools.shapes.ToolSelectShape3D
setMode(int) - Method in class mgui.io.standard.xml.svg.SVGFileInterface
setMode(int) - Method in class mgui.models.environments.SimpleEnvironment
setMode(ProgressUpdater.Mode) - Method in class mgui.interfaces.gui.AbstractProgressUpdater
setMode(ProgressUpdater.Mode) - Method in class mgui.interfaces.gui.InterfaceProgressBar: Sets the mode of this progress bar; one of Mode.Determinate or Mode.Indeterminate.
setMode(ProgressUpdater.Mode) - Method in interface mgui.interfaces.ProgressUpdater
setMode(InterfaceShapeQuery.QueryMode) - Method in class mgui.interfaces.tools.shapes.ToolQueryShape2D
setMode(InterfaceShapeQuery.QueryMode) - Method in class mgui.interfaces.tools.shapes.ToolQueryShape3D
setModel(Object3d) - Method in class au.edu.unsw.cse.Paint3d
setModel(Object3d) - Method in interface au.edu.unsw.cse.Painter
setModel(Object3d) - Method in class au.edu.unsw.cse.PaintVRML
setModel(Object3d) - Method in class au.edu.unsw.cse.Viewer
setModel(ShapeModel3D) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
setModel(ShapeModel3D) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
setModel(ShapeModel3D) - Method in class mgui.interfaces.shapes.ShapeSet3DInt: Sets this shape set's current model.
setModel(ShapeModel3D) - Method in class mgui.io.domestic.shapes.ShapeModel3DOutputOptions
setModel(ShapeModel3D, boolean) - Method in class mgui.interfaces.shapes.ShapeSet3DInt: Sets this shape set's current model.
setModel(InterfaceTableModel) - Method in class mgui.interfaces.tables.InterfaceDataTable
setModel(DynamicModel) - Method in class mgui.models.dynamic.DynamicModelEngine: Set the model for this engine to execute.
setModelClip(ModelClip) - Method in class mgui.interfaces.shapes.util.ClipPlane
setModelClip(ModelClip, Plane3D, float, float, boolean) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions: Sets clip to match the specified plane and clipping distances.
setModelSet(ShapeSet3DInt) - Method in class mgui.interfaces.shapes.ShapeModel3D
setModifiesShapeSet(boolean) - Method in class mgui.interfaces.shapes.util.ShapeEvent
setMorphSectionSet(MorphSections3DInt) - Method in class mgui.morph.sections.util.MorphSectionSetIterator
setMultiFileOption(SVGInputOptions.SVGMap) - Method in class mgui.io.standard.xml.svg.SVGInputOptions
setN(int) - Method in class mgui.neuro.components.compartments.CompartmentalComponent
setName(String) - Method in class mgui.datasources.DataConnection
setName(String) - Method in class mgui.datasources.DataField
setName(String) - Method in class mgui.datasources.DataQuery
setName(String) - Method in class mgui.datasources.DataSource
setName(String) - Method in class mgui.datasources.DataSourceDriver
setName(String) - Method in class mgui.geometry.mesh.MeshEngine
setName(String) - Method in class mgui.geometry.neuro.mesh.NeuroMeshEngine
setName(String) - Method in class mgui.geometry.util.NodeShape
setName(String) - Method in class mgui.geometry.volume.VolumeEngine
setName(String) - Method in class mgui.interfaces.AbstractInterfaceObject
setName(String) - Method in class mgui.interfaces.attributes.Attribute
setName(String) - Method in class mgui.interfaces.graphics.Graphic2DGrid
setName(String) - Method in class mgui.interfaces.graphics.InterfaceGraphic
setName(String) - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
setName(String) - Method in class mgui.interfaces.graphics.util.DrawingEngine
setName(String) - Method in class mgui.interfaces.graphics.video.Video
setName(String) - Method in class mgui.interfaces.graphics.View3D
setName(String) - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
setName(String) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplayTitle
setName(String) - Method in class mgui.interfaces.InterfaceOptions
setName(String) - Method in class mgui.interfaces.InterfaceSplitPanel
setName(String) - Method in class mgui.interfaces.io.InterfaceFile
setName(String) - Method in class mgui.interfaces.io.InterfaceIOType
setName(String) - Method in class mgui.interfaces.layouts.LayoutDocument
setName(String) - Method in class mgui.interfaces.layouts.LayoutItem
setName(String) - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
setName(String) - Method in class mgui.interfaces.maps.Camera3D
setName(String) - Method in class mgui.interfaces.maps.ColourMap
setName(String) - Method in interface mgui.interfaces.NamedObject: Sets the name for this object.
setName(String) - Method in class mgui.interfaces.neuro.InterfaceNeuroAtlas
setName(String) - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
setName(String) - Method in class mgui.interfaces.plots.mgui.PlotMap2D
setName(String) - Method in class mgui.interfaces.projects.InterfaceProject
setName(String) - Method in class mgui.interfaces.projects.ProjectDataItem
setName(String) - Method in class mgui.interfaces.projects.ProjectInstance
setName(String) - Method in class mgui.interfaces.queries.InterfaceQuery
setName(String) - Method in class mgui.interfaces.shapes.InterfaceShape
setName(String) - Method in class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt
setName(String) - Method in class mgui.interfaces.shapes.neuro.CorticalSurfaceSet3DInt
setName(String) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
setName(String) - Method in class mgui.interfaces.shapes.ShapeModel3D
setName(String) - Method in class mgui.interfaces.shapes.util.ShapeEngine
setName(String) - Method in class mgui.interfaces.shapes.VertexDataColumn
setName(String) - Method in class mgui.interfaces.tables.InterfaceTableModel
setName(String) - Method in class mgui.interfaces.variables.VariableInt
setName(String) - Method in class mgui.neuro.components.AbstractNeuroComponent
setName(String) - Method in class mgui.neuro.components.cortical.AbstractCorticalRegion
setName(String) - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalOutput
setName(String) - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
setName(String) - Method in class mgui.neuro.graphs.CorticalNetworkGraph
setName(String) - Method in class mgui.neuro.networks.AbstractNeuralNet
setName(String) - Method in class mgui.neuro.networks.CorticalNetwork
setName(String) - Method in class mgui.pipelines.PipelineProcess
setName(String) - Method in class mgui.pipelines.PipelineTask
setName(String) - Method in class mgui.pipelines.TaskParameterInstance
setNameMap(boolean) - Method in class mgui.interfaces.maps.DiscreteColourMap
setNameMap(String, NameMap) - Method in class mgui.interfaces.shapes.InterfaceShape: Sets the name map associated with column key.
setNameMap(NameMap) - Method in class mgui.interfaces.maps.DiscreteColourMap
setNameMap(NameMap) - Method in class mgui.interfaces.maps.NameMapTable
setNameMap(NameMap) - Method in class mgui.interfaces.neuro.InterfaceNeuroAtlas
setNameMap(NameMap) - Method in class mgui.interfaces.shapes.VertexDataColumn: Associates map with this column.
setNames(String[]) - Method in class mgui.io.domestic.shapes.ShapeDataInputOptions
setNames(ArrayList<String>) - Method in class mgui.io.domestic.datasources.ExportDataTableOptions
setNames(ArrayList<String>) - Method in class mgui.io.domestic.datasources.ImportDataTableOptions
setNamesFromFiles() - Method in class mgui.io.domestic.maps.DiscreteColourMapInOptions
setNode(int, int) - Method in class mgui.geometry.Mesh3D.MeshFace3D
setNode(InterfaceShape) - Method in class mgui.interfaces.shapes.Shape3DSceneNode
setNode(InterfaceShape) - Method in class mgui.interfaces.shapes.ShapeSceneNode
setNode(ShapeSet2DInt) - Method in class mgui.interfaces.shapes.Shape2DSectionNode
setNode(Point3f, int, float) - Method in class mgui.io.foreign.amira.AmiraTractLoader
setNode3D() - Method in class mgui.interfaces.shapes.Shape3DSceneNode
setNodeBool(int, boolean) - Method in class mgui.interfaces.shapes.BoolPolygon2DInt
setNodeList(MappedPolygon2D) - Method in class mgui.morph.sections.MappedPolygon2D: Sets the nodes in nodesA or nodesB from the previous polygon map in this series.
setNodes(Point3f[]) - Method in class mgui.interfaces.shapes.NodesUpdater
setNodeSortAttribute(String) - Method in class mgui.morph.sections.NodeMap2D
setNodeVal(int, int) - Method in class mgui.interfaces.shapes.IntPolygon2DInt
setObject(InterfaceObject) - Method in class mgui.io.DefaultIOOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.datasources.ExportDataTableOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.datasources.ImportDataTableOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.graphs.GraphInputOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.graphs.GraphOutputOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.maps.DiscreteColourMapInOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.maps.DiscreteColourMapOutOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.maps.NameMapInOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.maps.NameMapOutOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.network.CorticalNetworkMatrixInOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.pipelines.PipelineInputOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.pipelines.PipelineOutputOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.shapes.Graph3DOutputOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.shapes.PointSet2DInputOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.shapes.PointSet3DDataInputOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.shapes.PointSet3DInputOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.shapes.PolygonSet3DInputOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.shapes.ShapeDataInputOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.shapes.ShapeInputOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.shapes.ShapeModel3DInputOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.shapes.ShapeOutputOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.shapes.SurfaceDataInputOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.shapes.SurfaceDataOutputOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.shapes.SurfaceInputOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.shapes.SurfaceOutputOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.shapes.VectorSet3DInputOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.shapes.VolumeInputOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.shapes.VolumeOutputOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.variables.MatrixInOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.variables.MatrixOutOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.variables.StringVectorInOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.videos.VideoOutputOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.views.View3DInputOptions
setObject(InterfaceObject) - Method in class mgui.io.domestic.views.View3DOutputOptions
setObject(InterfaceObject) - Method in class mgui.io.foreign.caret.CaretAreaColourOutputOptions
setObject(InterfaceObject) - Method in class mgui.io.foreign.caret.CaretMetricOptions
setObject(InterfaceObject) - Method in class mgui.io.foreign.pajek.PajekGraphInputOptions
setObject(InterfaceObject) - Method in class mgui.io.InterfaceIOOptions: Sets the object on which to perform an I/O operation
setObject(InterfaceObject) - Method in class mgui.io.standard.xml.x3d.Vector3DInputOptions
setObject(InterfaceObject) - Method in class mgui.io.standard.xml.XMLOutputOptions
setObjectTree(InterfaceTreePanel) - Method in class mgui.interfaces.InterfaceDisplayPanel
setObjectTree(InterfaceTreePanel) - Method in class mgui.interfaces.InterfaceWorkspace
setObservableName(int, String) - Method in interface mgui.models.dynamic.DynamicModelEnvironment
setObservableName(int, String) - Method in class mgui.models.environments.SimpleEnvironment
setObservableNames(NameMap) - Method in interface mgui.models.dynamic.DynamicModelEnvironment
setObservableNames(NameMap) - Method in class mgui.models.environments.SimpleEnvironment
setObservableSize(int) - Method in interface mgui.models.dynamic.DynamicModelEnvironment
setObservableSize(int) - Method in class mgui.models.environments.SimpleEnvironment
setObservableState(double[]) - Method in interface mgui.models.dynamic.DynamicModelEnvironment
setObservableState(double[]) - Method in class mgui.models.environments.SimpleEnvironment
setObservableState(int, double) - Method in interface mgui.models.dynamic.DynamicModelEnvironment
setObservableState(int, double) - Method in class mgui.models.environments.SimpleEnvironment
setODESolver(ODESolver) - Method in class mgui.neuro.components.AbstractNeuroComponent
setOffScreenCanvas(PostRenderingCanvas3D.OffScreenCanvas3D) - Method in class mgui.interfaces.graphics.PostRenderingCanvas3D
setOffset(double) - Method in class mgui.models.updaters.LinearUpdater
setOpenIcon(Icon) - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer: Sets the icon used to represent non-leaf nodes that are expanded.
setOptions() - Method in class mgui.interfaces.shapes.volume.VolumeMaskDialog_old
setOptions(Class<InterfaceIOOptions>) - Method in class mgui.interfaces.io.InterfaceIOType
setOptions(CorticalThicknessDataTableOptions) - Method in class mgui.interfaces.neuro.CorticalThicknessDataTableDialogBox
setOptions(CorticalThicknessOptions) - Method in class mgui.interfaces.neuro.CorticalThicknessDialogBox
setOptions(CorticalNetworkMatrixInOptions) - Method in class mgui.io.domestic.network.CorticalNetworkMatrixLoader
setOptions(ShapeModel3DOutputOptions) - Method in class mgui.io.domestic.shapes.ShapeModel3DOutputDialog.TableModel
setOptions(CaretSurfaceOutOptions) - Method in class mgui.io.foreign.caret.CaretSurfaceWriter
setOptions(InterfaceIOOptions) - Method in class mgui.interfaces.io.InterfaceIODialogBox
setOptions(InterfaceIOOptions) - Method in class mgui.io.FileLoader
setOptions(InterfaceIOOptions) - Method in class mgui.io.FileWriter
setOptions(InterfaceIOOptions) - Method in interface mgui.io.InterfaceIO: Sets the InterfaceIOOptions specifying this I/O operation
setOptions(SVGInputOptions) - Method in class mgui.io.standard.xml.svg.SVGFileInterface
setOrig - Variable in class mgui.io.foreign.vol.VolumeInputOptions
setOrigin(float, float) - Method in class mgui.interfaces.maps.Map2D
setOrigin(Point3f) - Method in class mgui.geometry.Plane3D
setOrigin(Point3f) - Method in interface mgui.interfaces.shapes.volume.VolumeMetadata: Sets the origin
setOrigin(Point3f) - Method in class mgui.io.foreign.fsl.FSLVolumeMetadata
setOrigin(Point3f) - Method in class mgui.io.foreign.wunil.WunilDataset
setOrigin(Point3f) - Method in class mgui.io.standard.nifti.NiftiMetadata
setOutline(Polygon2D) - Method in class mgui.interfaces.shapes.Volume2DInt
setOutput(double) - Method in interface mgui.models.dynamic.DynamicModelOutputEvent
setOutput(double) - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalOutputEvent
setOutput(double) - Method in class mgui.neuro.components.simple.SimpleAxon
setOutput(double) - Method in class mgui.neuro.components.simple.SimpleMotorNeuron
setOutput(double) - Method in class mgui.neuro.components.simple.SimpleMotorNeuronEvent
setOutput(double) - Method in class mgui.neuro.components.simple.SimpleSoma
setOutput(SimpleCorticalOutput) - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
setOutputChannel(String) - Method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
setOutputFile(String) - Method in class mgui.io.DataFileInterface: Deprecated.
setOutputFile(String) - Method in class mgui.pipelines.PipelineProcessInstance: Sets the path of the output file associated with this process.
setOutputFiles(File[]) - Method in class mgui.interfaces.io.InterfaceFilePanel
setOutputParameter(String) - Method in class mgui.pipelines.PipelineProcess: Sets the parameter which is used to determine the output file for this process.
setOutputPipeline(InterfacePipeline) - Method in class mgui.pipelines.PipelineFork
setOverride(AttributeList) - Method in class mgui.interfaces.shapes.InterfaceShape
setOverride(AttributeList) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
setOverride(AttributeList) - Method in class mgui.interfaces.shapes.ShapeSet2DInt: If attr is non-null, sets override attributes for all members of this set, and sets isOverridden to true.
setOverride(AttributeList) - Method in class mgui.interfaces.shapes.ShapeSet3DInt: If attr is non-null, sets override attributes for all members of this set, and sets isOverridden to true.
setPageCount(int) - Method in class mgui.interfaces.layouts.LayoutDocument: Sets the number of printable pages in this document.
setPageFormat(PageFormat) - Method in class mgui.interfaces.layouts.LayoutDocument: Sets this document's page format (size and orientation)
setPanel(InterfaceGraphic) - Method in class mgui.interfaces.InterfaceSplitPanel
setPanel(InterfaceGraphic<?>) - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
setPanel(InterfaceGraphic3D) - Method in class mgui.interfaces.graphics.util.Axes3D
setPanel(InterfacePanel) - Method in class mgui.interfaces.InterfaceHideablePanel
setPanel3D(InterfaceGraphic3D) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplayTitle
setPanel3D(InterfaceGraphic3D) - Method in class mgui.interfaces.tables.InterfaceDataTableTitle
setPanelName(String) - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
setPanRate(double) - Method in class mgui.interfaces.tools.graphics.ToolMouseOrbit3D
setParameter(String, String) - Method in class mgui.pipelines.PipelineProcessInstance: Sets the value of the specified parameter.
setParameter(String, String, boolean) - Method in class mgui.pipelines.PipelineProcessInstance: Sets the value of the specified parameter, and whether it should be applied.
setParameterFont(Font) - Method in class mgui.interfaces.pipelines.trees.PipelineTree
setParameters(ArrayList<TaskParameter>) - Method in class mgui.pipelines.PipelineProcess
setParameters(HashMap<String, TaskParameterInstance>) - Method in class mgui.pipelines.PipelineProcessInstance: Sets the parameters for this process.
setParameters(InterfaceOptions) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
setParameters(InterfaceOptions, int) - Method in interface mgui.interfaces.InterfaceDialogUpdater
setParameters(InterfaceOptions, int) - Method in class mgui.interfaces.io.InterfaceFilePanel
setParameters(InterfaceOptions, int) - Method in class mgui.interfaces.models.InterfaceDynamicModelPanel
setParameterVariables(String, HashMap<String, ArrayList<String>>, int) - Static method in class mgui.pipelines.PipelineFunctions: Replaces all variables in param with the values in variables.
setParams(VolumeMaskOptions_old) - Method in class mgui.interfaces.shapes.volume.VolumeMaskUpdater
setParent(SectionSet3DInt, int) - Method in class mgui.morph.sections.MorphSections3DInt
setParent(Volume3DInt) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn: Sets the parent volume for this vertex data
setParent(AbstractNeuron) - Method in class mgui.neuro.components.AbstractDendrites
setParent(Neuron) - Method in class mgui.neuro.components.AbstractDendrite
setParent(Neuron) - Method in class mgui.neuro.components.AbstractNeuronalComponent
setParent(Neuron) - Method in class mgui.neuro.components.compartments.CompartmentalDendrite
setParent(Neuron) - Method in class mgui.neuro.components.compartments.NeuronalCompartmentalComponent
setParent(Neuron) - Method in interface mgui.neuro.components.NeuronalComponent
setParent2D(Shape2DInt) - Method in class mgui.interfaces.shapes.Shape3DInt
setParentObj(InterfacePanel) - Method in class mgui.interfaces.layouts.CategoryTitle
setParentPanel(WindowContainer) - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
setParentSet(ShapeSet) - Method in class mgui.interfaces.shapes.InterfaceShape: Sets this shape's parent set to set.
setParentSet(ShapeSet) - Method in class mgui.interfaces.shapes.Volume3DInt: Overrides InterfaceShape.setParentSet to add itself as a listener to the parent
setParentShape(Shape3DInt) - Method in class mgui.interfaces.shapes.Shape2DInt
setParentTree(JTree) - Method in class mgui.interfaces.trees.InterfaceTreeNode
setParentWindow(InterfaceGraphic) - Method in class mgui.interfaces.graphics.InterfaceGraphic2DTextBox
setParentWindow(InterfaceGraphic) - Method in class mgui.interfaces.graphics.InterfaceGraphicTextBox
setParentWindow(InterfaceGraphic) - Method in class mgui.interfaces.InterfaceSelectionPanel
setParentWindow(InterfaceGraphic) - Method in class mgui.interfaces.queries.InterfaceQueryPanel
setParentWindow(InterfaceGraphic) - Method in class mgui.interfaces.shapes.selection.InterfaceSelectionSet
setParentWindow(InterfaceGraphic) - Method in class mgui.interfaces.shapes.Text2DIntMouseCoords
setParentWindow(InterfaceGraphic<?>) - Method in interface mgui.interfaces.graphics.GraphicListener: Deprecated.
setParentWindow(InterfaceGraphic<?>) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
setPassword(String) - Method in class mgui.datasources.DataConnection: Sets the password for this connection.
setPassword(String) - Method in class mgui.datasources.DataSourceDriver
setPath(String) - Method in class mgui.interfaces.projects.ProjectDirectory
setPath(String) - Method in class mgui.pipelines.NativeProcess: Sets the path to the native binaries for this process.
setPerspective(boolean) - Method in class au.edu.unsw.cse.View3dInfo
setPhi(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setPickTolerance(float) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
setPipeline(InterfacePipeline) - Method in class mgui.interfaces.pipelines.trees.PipelineTree
setPipeline(InterfacePipeline) - Method in class mgui.pipelines.InterfacePipeline
setPipeline(InterfacePipeline) - Method in class mgui.pipelines.PipelineFork
setPipeline(InterfacePipeline) - Method in class mgui.pipelines.PipelineProcessInstance
setPipeline(InterfacePipeline) - Method in class mgui.pipelines.PipelineTask
setPixel(int, int, int[], DataBuffer) - Method in class mgui.interfaces.shapes.util.GridSampleModel: Sets a pixel in the DataBuffer using an int array of samples for input.
setPixels(int, int, int, int, int[], DataBuffer) - Method in class mgui.interfaces.shapes.util.GridSampleModel: Sets all samples for a rectangle of pixels from an int array containing one sample per array element.
setPlanePoly(Polygon3D) - Method in class mgui.interfaces.shapes.Volume2DInt
setPlaneRect(Rect3D) - Method in class mgui.interfaces.shapes.Volume2DInt
setPlot(InterfacePlot<?>) - Method in class mgui.interfaces.plots.InterfacePlotDisplay
setPlotLayout() - Method in class mgui.interfaces.plots.sgt.InterfacePlotSgt: Sets a plot layout appropriate for this plot type of the sub class.
setPlotLayout() - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlot
setPlotLayout() - Method in class mgui.interfaces.plots.sgt.SgtScatterplot
setPoints() - Method in class au.edu.unsw.cse.Bezier3d: Create a Bezier patch given 4x4 grid of controls Colours are used for wireframe in s direction and t direction
setPoints() - Method in class au.edu.unsw.cse.Bspline3d: Create a Bspline patch given 4x4 grid of controls Colours are used for wireframe in s direction and t direction
setPoints(Point3d[][]) - Method in class au.edu.unsw.cse.QuadMesh3d
setPolygonDirections(SectionSet3DInt, PolygonFunctions.PolyDirection) - Static method in class mgui.geometry.polygon.PolygonFunctions: Sets the polygon direction of each polygon in polygons to the specified direction.
setPolygons(Polygon2D, Polygon2D) - Method in class mgui.morph.sections.MappedPolygon2D
setPopupHeight(int) - Method in class mgui.interfaces.gui.InterfaceComboBox
setPopupMenu(InterfacePopupMenu) - Method in class mgui.interfaces.trees.InterfaceTreeNode
setPopupShape(BranchGroup) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
setPopupWidth(int) - Method in class mgui.interfaces.gui.InterfaceComboBox
setPosition(String) - Method in class mgui.interfaces.plots.sgt.SgtAxis
setPreferredSize(Dimension) - Method in class mgui.interfaces.layouts.LineLayout
setPreferredSize(Dimension) - Method in class mgui.interfaces.shapes.util.StrokeSample
setPrependSubjectInput(boolean) - Method in class mgui.pipelines.PipelineProcessInstance
setPrependSubjectOutput(boolean) - Method in class mgui.pipelines.PipelineProcessInstance
setProcess() - Method in class mgui.interfaces.pipelines.PipelineProcessDialogBox
setProcess(PipelineProcess) - Method in class mgui.pipelines.PipelineProcessInstance: Sets the process defining this instance.
setProcessInstance() - Method in class mgui.interfaces.pipelines.PipelineProcessInstanceDialogBox
setProgressUpdater(ProgressUpdater) - Method in class mgui.interfaces.datasources.DataTableModel
setProject(InterfaceProject) - Method in class mgui.pipelines.InterfacePipeline
setProjectDir(String) - Method in class mgui.interfaces.projects.InterfaceProject
setProjectionPlane(Plane3D) - Method in class mgui.interfaces.graphs.layouts.CoordinateLayout
setProjectionPlane(Plane3D) - Method in class mgui.interfaces.shapes.graphs.util.Graph2DLayout
setQ_V_max(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setQ_Z_max(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setQuery(InterfaceQuery) - Method in class mgui.interfaces.queries.QueryResultPanel
setQueryTool3D() - Method in class mgui.interfaces.InterfaceSelectionPanel
setQueryTools() - Method in class mgui.interfaces.queries.InterfaceQueryPanel
setR_NMDA(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setRange(SoTRange) - Method in class mgui.interfaces.plots.sgt.SgtAxis: Sets this axis's range from range.
setRange(SoTRange, boolean) - Method in class mgui.interfaces.plots.sgt.SgtAxis: Sets this axis's range from range.
setRangeX(SoTRange) - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout: Sets this layout's X range from range.
setRangeY(SoTRange) - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout: Sets this layout's Y range from range.
setRate(double) - Method in class mgui.models.updaters.PulseTrainUpdater
setRate(double) - Method in class mgui.neuro.updaters.PulseTrainUpdater
setRAxis(Vector3f) - Method in class mgui.geometry.Box3D
setRDim(float) - Method in class mgui.geometry.Box3D
setRecordSet() - Method in class mgui.datasources.DataRecordSet
setRecordSet(String) - Method in class mgui.datasources.DataRecordSet
setRed(float) - Method in class mgui.util.Colour
setRed(float) - Method in class mgui.util.Colour3f
setRed(float) - Method in class mgui.util.Colour4f
setRed(int) - Method in class mgui.util.Colour
setRed(int) - Method in class mgui.util.Colour1f
setRed(int) - Method in class mgui.util.Colour2f
setReferenceCamera(Camera3D) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer: Sets the reference camera for this renderer.
setRefPlane(Plane3D) - Method in class mgui.interfaces.shapes.SectionSet3DInt: Sets the reference plane (i.e., at index 0) for this section set.
setRefreshRate(long) - Method in class mgui.interfaces.graphics.video.Video: Sets the refresh rate of this video.
setRenderer(QueryResultTableTreeRenderer) - Method in class mgui.interfaces.queries.tables.QueryResultTableTreeEditor
setRenderMode(String) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
setRenderMode(String) - Method in class mgui.interfaces.shapes.Volume3DInt: Sets the current render mode of this volume
setRenderMode(InterfaceComboBoxBak.RenderMode) - Method in class mgui.interfaces.gui.InterfaceComboBoxBak
setRenderMode(Volume3DRenderer.Mode) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
setRenderVertices(ArrayList<Boolean>) - Method in class mgui.geometry.Polygon2D
setRepeat(boolean) - Method in class mgui.models.updaters.PulseTrainUpdater
setRepeat(boolean) - Method in class mgui.neuro.updaters.PulseTrainUpdater
setRepresentation(Polygon2D) - Method in class mgui.morph.sections.RadialRep2DInt
SetRepresentation(Polygon2D) - Method in class mgui.morph.sections.RadialRepresentation: Set the radial representation for a given polygon
setRestingV(double) - Method in class mgui.neuro.components.simple.SimpleDendrite
setRestingV(double) - Method in class mgui.neuro.components.simple.SimpleSoma
setRestingV(double) - Method in class mgui.neuro.components.simple.SimpleSynapse
setResult(QueryResult) - Method in class mgui.interfaces.queries.tables.QueryResultTable
setResult(QueryResult) - Method in class mgui.interfaces.queries.tables.QueryResultTableModel
setReversed(boolean) - Method in class mgui.interfaces.plots.sgt.SgtAxis: Sets whether this axis' ordinates are reversed.
setRight(CorticalHemisphereSet3DInt) - Method in class mgui.interfaces.shapes.neuro.CorticalSurfaceSet3DInt
setRootDir(File) - Method in class mgui.interfaces.projects.InterfaceProject
setRootDir(String) - Method in class mgui.io.domestic.shapes.xml.InterfaceShapeXMLHandler
setRootDir(String) - Method in class mgui.io.domestic.shapes.xml.ShapeModel3DXMLHandler
setRootDir(String) - Method in class mgui.io.domestic.shapes.xml.ShapeSet3DXMLHandler
setRootDirectory(File) - Method in class mgui.pipelines.InterfacePipeline
setRootFont(Font) - Method in class mgui.interfaces.pipelines.trees.PipelineTree
setRootNode(InterfaceTreeNode) - Method in class mgui.interfaces.trees.InterfaceTreePanel
setRotateRate(double) - Method in class mgui.interfaces.tools.graphics.ToolMouseOrbit3D
setRotation(Vector2f) - Method in class mgui.geometry.Rect2D: Sets the rotation vector of this rectangle, specifying the orientation of its top and bottom edges.
setRotationPoint(Point3d) - Method in class mgui.interfaces.maps.Camera3D
setRotX(double) - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
setRotY(double) - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
setSample(int) - Method in class mgui.interfaces.shapes.dynamic.Volume4DInt: Sets the display grid with sample i from this volume's input stream, using the integration method specified in the IntegrateMethod attribute.
setSample(int, double) - Method in class mgui.geometry.neuro.mesh.SampleRay
setSample(int, int, int, double, DataBuffer) - Method in class mgui.interfaces.shapes.util.GridSampleModel: Sets a sample in the specified band for the pixel located at (x,y) in the DataBuffer using a double for input.
setSample(int, int, int, float, DataBuffer) - Method in class mgui.interfaces.shapes.util.GridSampleModel: Sets a sample in the specified band for the pixel located at (x,y) in the DataBuffer using a float for input.
setSample(int, int, int, int, DataBuffer) - Method in class mgui.interfaces.shapes.util.GridSampleModel: Sets a sample in the specified band for the pixel located at (x,y) in the DataBuffer using an int for input.
setSamples(int, int, int, int, int, int[], DataBuffer) - Method in class mgui.interfaces.shapes.util.GridSampleModel: Sets the samples in the specified band for the specified rectangle of pixels from an int array containing one sample per data array element.
setSamples(ArrayList<Double>) - Method in class mgui.geometry.neuro.mesh.SampleRay
setSAxis(Vector3f) - Method in class mgui.geometry.Box3D
setScale(double) - Method in class mgui.image.util.WindowedColourModel
setScale(double, double, Point2D) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
setScale(float) - Method in class mgui.interfaces.shapes.util.Point2DShape
setScanNodes(BranchGroup) - Method in class mgui.interfaces.shapes.Volume2DInt
setScene(BranchGroup) - Method in class mgui.interfaces.shapes.X3DScene3DInt
setScene3DObject() - Method in class mgui.interfaces.shapes.Box3DInt
setScene3DObject() - Method in class mgui.interfaces.shapes.Image3DInt
setScene3DObject() - Method in class mgui.interfaces.shapes.LPolygon3DInt
setScene3DObject() - Method in class mgui.interfaces.shapes.Polygon3DInt
setScene3DObject() - Method in class mgui.interfaces.shapes.Rect3DInt
setScene3DObject() - Method in class mgui.interfaces.shapes.SectionSet3DInt
setScene3DObject() - Method in class mgui.interfaces.shapes.Shape3DInt: Sets this ShapeInt's Java3D scene node from its current geometry and rendering attributes.
setScene3DObject() - Method in class mgui.interfaces.shapes.TestTextureInt
setScene3DObject() - Method in class mgui.interfaces.shapes.X3DScene3DInt
setScene3DObject(boolean) - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
setScene3DObject(boolean) - Method in class mgui.interfaces.shapes.Mesh3DInt: return an IndexedTriangleArray object representing this mesh.
setScene3DObject(boolean) - Method in class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt
setScene3DObject(boolean) - Method in class mgui.interfaces.shapes.neuro.CorticalSurfaceSet3DInt
setScene3DObject(boolean) - Method in class mgui.interfaces.shapes.PointSet3DInt
setScene3DObject(boolean) - Method in class mgui.interfaces.shapes.Polygon3DInt
setScene3DObject(boolean) - Method in class mgui.interfaces.shapes.PolygonSet3DInt
setScene3DObject(boolean) - Method in class mgui.interfaces.shapes.SectionSet3DInt
setScene3DObject(boolean) - Method in class mgui.interfaces.shapes.Shape3DInt: Sets this ShapeInt's Java3D scene node from its current geometry and rendering attributes.
setScene3DObject(boolean) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
setScene3DObject(boolean) - Method in class mgui.interfaces.shapes.Vector3DInt
setScene3DObject(boolean) - Method in class mgui.interfaces.shapes.VectorSet3DInt
setScene3DObject(boolean) - Method in class mgui.interfaces.shapes.Volume3DInt
setScene3DObject(boolean) - Method in class mgui.interfaces.shapes.VolumeSet3DInt
setScene3DObject(boolean, ShapeSelectionSet) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
setScene3DObject(boolean, ShapeSelectionSet, boolean) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
setScene3DObject(ShapeSelectionSet, boolean) - Method in class mgui.interfaces.shapes.SectionSet3DInt
setScreenBounds(int, int) - Method in class mgui.interfaces.maps.Map2D
setScreenBounds(Dimension) - Method in class mgui.interfaces.maps.Map2D
setScreenXform(Canvas3D, Node) - Method in class mgui.interfaces.shapes.util.ScreenSizeCalculator
setSDim(float) - Method in class mgui.geometry.Box3D
setSecret(boolean) - Method in class mgui.interfaces.attributes.Attribute
setSectionNode(InterfaceGraphic2D) - Method in class mgui.interfaces.shapes.ShapeSet3DInt: Updates or creates the section node for this window.
setSectionNodes() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
setSectionSet(SectionSet3DInt) - Method in class mgui.interfaces.shapes.util.SectionSetIterator
setSectionsNode() - Method in class mgui.interfaces.shapes.ShapeModel3D: Sets the BranchGroup which visualizes the 2D windows which have section sets as their source which are members of this model.
setSeed(long) - Static method in class au.edu.unsw.cse.Point3d: Set seed of random number generator
setSelectable(boolean) - Method in class mgui.interfaces.shapes.InterfaceShape: Sets the selectability of this InterfaceShape to true.
setSelectable(boolean) - Method in class mgui.interfaces.trees.InterfaceTreeNode
setSelectedColumn(String) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel: Sets the current selected column.
setSelectedFont(Font) - Method in class mgui.interfaces.gui.FontDialog
setSelectedVertices(ArrayList<Integer>) - Method in class mgui.interfaces.shapes.Shape3DInt
setSelectionSets(ArrayList<ShapeSelectionSet>) - Method in class mgui.interfaces.shapes.ShapeModel3D
setSelectionTool3D() - Method in class mgui.interfaces.InterfaceSelectionPanel
setSetOperator(String) - Method in class mgui.pipelines.NativeProcess: Sets the set operator character for this process.
setSgtData(T) - Method in class mgui.interfaces.plots.sgt.SgtPlotObject: Sets the SGT data for this object
setShape(Shape) - Method in class mgui.geometry.util.NodeShape: Sets this node shape to a single shape
setShape(Shape2D) - Method in class mgui.interfaces.shapes.BoolPolygon2DInt
setShape(Shape2D) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt
setShape(Shape2D) - Method in class mgui.interfaces.shapes.IntPolygon2DInt
setShape(Shape2D) - Method in class mgui.interfaces.shapes.Polygon2DInt
setShape(Shape2D) - Method in class mgui.interfaces.shapes.Rect2DInt
setShape(Shape2D) - Method in class mgui.interfaces.shapes.Shape2DInt
setShape(Shape2D) - Method in class mgui.interfaces.shapes.Text2DInt
setShape(Shape3D) - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
setShape(Shape3D) - Method in class mgui.interfaces.shapes.Mesh3DInt
setShape(Shape3D) - Method in class mgui.interfaces.shapes.Polygon3DInt
setShape(Shape3D) - Method in class mgui.interfaces.shapes.Shape3DInt
setShape(InterfaceShape) - Method in class mgui.interfaces.shapes.util.ShapeEvent
setShape(Shape3DInt) - Method in class mgui.io.domestic.shapes.ShapeDataInputOptions
setShapes(ArrayList<Shape>) - Method in class mgui.geometry.util.NodeShape: Sets the list of shapes
setShapeSceneNode() - Method in class mgui.interfaces.shapes.Shape3DInt: Sets the scene node for this shape, either by creating a new node or setting the current shape node to an existing scene node.
setShapeSceneNode(SectionSet3DInt, int) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
setShapeSceneNode(SectionSet3DInt, int, boolean) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
setShapeSceneNode(SectionSet3DInt, int, boolean, ShapeSelectionSet) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
setShapeSectionNode(SectionSet3DInt, int) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
setShapeSet(ShapeSet) - Method in class mgui.io.domestic.shapes.ShapeInputOptions
setShapeSet2D() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
setShapeSet2D() - Method in class mgui.interfaces.InterfaceDisplayPanel
setShowAxes(boolean) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
setShowLabels(boolean) - Method in class mgui.interfaces.graphics.Graphic2DGrid
setShowSelectedVertices(boolean) - Method in class mgui.interfaces.shapes.Shape3DInt
setSigmoid(SigmoidFunction) - Method in class mgui.neuro.components.cortical.functions.BiexponentialFunction
setSize(int, int) - Method in class mgui.interfaces.gui.InterfaceProgressBar
setSize(Point2D.Float) - Method in class mgui.interfaces.layouts.LayoutItem: Sets the size of this item, in document units.
setSize(BoundingSphere) - Method in class mgui.interfaces.graphs.layouts.Coordinate3DLayout
setSolidColour(Color) - Method in class mgui.image.util.WindowedColourModel
setSolidColour(Color) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn: Sets the colour for solid colour rendering.
setSolver() - Method in class mgui.neuro.components.AbstractNeuroComponent
setSolver() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
setSolver(String) - Method in class mgui.neuro.components.AbstractNeuroComponent
setSoma(AbstractSoma) - Method in class mgui.neuro.components.simple.SimpleNeuron
setSoma(Soma) - Method in class mgui.neuro.components.AbstractNeuron
setSoma(Soma) - Method in class mgui.neuro.components.compartments.CompartmentalNeuron
setSoma(Soma) - Method in interface mgui.neuro.components.Neuron
setSortAttribute(String) - Method in class mgui.morph.sections.AttributeNode2D
setSortAttribute(String) - Method in class mgui.morph.sections.NodeMap2D
setSortedFields(boolean) - Method in class mgui.datasources.DataQuery
setSortedFields(boolean) - Method in class mgui.datasources.DataTable
setSource(int) - Method in class mgui.morph.sections.MorphNodeMap2D
setSource(Object) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
setSource(Object) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
setSource(Object) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
setSource(Object) - Method in class mgui.interfaces.InterfacePanel: Sets the source object for this panel.
setSource(Object) - Method in class mgui.interfaces.plots.InterfacePlotDisplay
setSource(Object) - Method in class mgui.interfaces.tables.InterfaceDataTable
setSourceURL(String) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
setSpacing(double) - Method in class mgui.interfaces.graphics.Graphic2DGrid
setSpacing(float) - Method in class mgui.interfaces.shapes.SectionSet3DInt: Sets the spacing distance for this section set.
setSplit(double) - Method in class mgui.interfaces.gui.ColourBarOutDialog
setSplitRatio(double) - Method in class mgui.interfaces.InterfaceSplitPanel
setSQLStatement(String) - Method in class mgui.datasources.DataQuery
setSQLTypes(HashMap<Integer, String>) - Static method in class mgui.datasources.DataTypes
setStart(long) - Method in class mgui.interfaces.graphics.video.VideoTask: Sets the start time for this task
setStart(Point3f) - Method in class mgui.geometry.Vector3D
setStartPtScale(float) - Method in class mgui.interfaces.shapes.Vector2DInt
setStartPtScale(float) - Method in class mgui.interfaces.shapes.Vector3DInt
setStartRatio(float) - Method in class mgui.interfaces.shapes.Vector2DInt
setState(double[]) - Method in class mgui.models.dynamic.functions.ODEFunction
setStatus(PipelineTask.Status) - Method in class mgui.pipelines.PipelineTask
setStatusBar(InterfaceStatusBarPanel) - Method in class mgui.interfaces.graphics.InterfaceGraphic
setStatusBar(InterfaceStatusBarPanel) - Method in class mgui.interfaces.InterfaceDisplayPanel
setStatusBar(InterfaceStatusBarPanel) - Method in class mgui.interfaces.InterfacePanel
setStatusBar(InterfaceStatusBarPanel) - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
setStep(double) - Method in class mgui.models.updaters.LinearUpdater
setSteps(int) - Method in class au.edu.unsw.cse.Bezier3d: set step size for Bezier
setSteps(int) - Method in class au.edu.unsw.cse.Bspline3d: set step size for Bspline
setStop(long) - Method in class mgui.interfaces.graphics.video.VideoTask: Sets the stop time for this task
setStringValue(List<Integer>, String) - Method in class mgui.interfaces.variables.MatrixInt
setStringValue(List<Integer>, String) - Method in class mgui.interfaces.variables.StringVectorInt
setStringValue(List<Integer>, String) - Method in class mgui.interfaces.variables.VariableInt: Sets the value at the given indices as a String; throws an exception if they are out of bounds, this variable is not editable, or value is an inappropriate value.
setStringValue(List<Integer>, String) - Method in class mgui.interfaces.variables.VectorInt
setStroke(Stroke) - Method in class mgui.interfaces.plots.sgt.SgtLine
setStroke(Stroke) - Method in class mgui.interfaces.shapes.util.StrokeSample: Sets the Stroke object being displayed.
setStyle(Stroke) - Method in class mgui.interfaces.graphics.Graphic2DGrid
setSubdirectories(ArrayList<ProjectDirectory>) - Method in class mgui.interfaces.projects.InterfaceProject: Sets the subdirectory list from a list of paths.
setSubdirectoriesFromPaths(ArrayList<String>) - Method in class mgui.interfaces.projects.InterfaceProject
setSubdirs() - Method in class mgui.interfaces.projects.InterfaceProject
setSubdirs() - Method in class mgui.neuro.imaging.camino.CaminoProject
setSubject(String) - Method in class mgui.pipelines.InterfacePipeline
setSubjectList() - Method in class mgui.interfaces.neuro.imaging.camino.InterfaceCaminoPanel
setSubjects() - Method in class mgui.neuro.imaging.camino.CaminoProject
setSuccessStatus(boolean) - Method in class mgui.command.CommandInstance
setSuccessStatus(boolean) - Method in class mgui.command.CommandInterpreter
setSuperTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
setSurfaceCoords(byte[]) - Method in class mgui.io.standard.gifti.xml.GiftiXMLHandler: Sets the coordinates from b_data, with the given "da" parameters.
setSurfaceCoords(String) - Method in class mgui.io.standard.gifti.xml.GiftiXMLHandler
setSurfaceFaces(byte[]) - Method in class mgui.io.standard.gifti.xml.GiftiXMLHandler: Sets this mesh's faces from b_data.
setSurfaceFaces(String) - Method in class mgui.io.standard.gifti.xml.GiftiXMLHandler
setTable(JTable) - Method in class mgui.interfaces.tables.InterfaceDataTable
setTableSet() - Method in class mgui.datasources.DataSource: Refreshes the list of tables from the data source.
setTableSet(boolean) - Method in class mgui.datasources.DataSource: Refreshes the list of tables from the data source.
setTableSet(DataTableSet) - Method in class mgui.datasources.DataSource: Sets the tables for this data source from a predefined set.
setTangentX(double) - Method in class mgui.morph.sections.MorphNode2D
setTangentY(double) - Method in class mgui.morph.sections.MorphNode2D
setTarget(int) - Method in class mgui.morph.sections.MorphNodeMap2D
setTargetPanel(InterfaceDisplayPanel) - Method in class mgui.interfaces.InterfaceButtonPanel
setTargetPanel(InterfacePanel) - Method in class mgui.interfaces.tools.dialogs.DialogTool
setTargetPanel(InterfacePanel) - Method in class mgui.interfaces.tools.graphics.Tool2D
setTargetPanel(InterfacePanel) - Method in class mgui.interfaces.tools.graphics.Tool3D
setTargetPanel(InterfacePanel) - Method in class mgui.interfaces.tools.graphics.ToolMouseOrbit3D
setTargetPanel(InterfacePanel) - Method in class mgui.interfaces.tools.graphs.ToolGraph
setTargetPanel(InterfacePanel) - Method in class mgui.interfaces.tools.graphs.ToolGraphTransform
setTargetPanel(InterfacePanel) - Method in interface mgui.interfaces.tools.Tool
setTargetPoint(Point3d) - Method in class mgui.interfaces.maps.Camera3D
setTargetShape(Shape2DInt) - Method in class mgui.interfaces.tools.graphics.Tool2D
setTargetShape(Shape3DInt) - Method in class mgui.interfaces.tools.graphics.Tool3D
setTargetTransform(TransformGroup) - Method in class mgui.interfaces.maps.Map3D
setTask(VideoTask) - Method in class mgui.interfaces.graphics.video.VideoTaskOptions
setTaskFailed(boolean) - Method in class mgui.pipelines.PipelineState
setTaskInstance(PipelineTask) - Method in class mgui.pipelines.InterfacePipeline
setTaskInterrupted(boolean) - Method in class mgui.pipelines.PipelineState
setTasks(ArrayList<VideoTask>) - Method in class mgui.interfaces.graphics.video.Video
setTau(double) - Method in class mgui.neuro.components.cortical.functions.BiexponentialFunction
setTau(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setTauS(double) - Method in class mgui.neuro.components.cortical.functions.BiexponentialFunction
setTAxis(Vector3f) - Method in class mgui.geometry.Box3D
setTDim(float) - Method in class mgui.geometry.Box3D
setTemplate(String) - Method in class mgui.datasources.postgresql.PostgreSQLDriver: Sets the name of the template database to use for creating new databases
setTestSet(double[]) - Method in interface mgui.models.dynamic.stats.DynamicModelStatistics
setTestSet(double[]) - Method in class mgui.neuro.stats.SimpleStatistics
setText(String) - Method in class mgui.geometry.Text2D
setText(String) - Method in class mgui.interfaces.shapes.Text2DInt
setTextNonSelectionColor(Color) - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer: Sets the color the text is drawn with when the node isn't selected.
setTextSelectionColor(Color) - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer: Sets the color the text is drawn with when the node is selected.
setTexture() - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer: Sets the current texture for this volume's renderer.
setTexture() - Method in class mgui.interfaces.shapes.volume.Volume3DTexture: Produces a stack of R-planar images from volume, based upon the current data column and its associated colour map.
setTexture() - Method in class mgui.interfaces.shapes.Volume3DInt: Resets the texture for this volume's renderer.
setTexture(boolean) - Method in class mgui.interfaces.shapes.Volume3DInt: Resets the texture for this volume's renderer.
setTexture(BufferedImage, boolean) - Method in class mgui.interfaces.shapes.util.Image2DTexture: Sets the texture for this object from an image.
setTexture(BufferedImage, boolean) - Method in class mgui.interfaces.shapes.util.Image3DTexture: Sets the texture for this object from an image.
setTexture(ColourMap) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer: Sets a Volume3DTexture object from the current grid and data size
setTFlip(boolean) - Method in class mgui.io.foreign.vol.Volume
setThreshold(double) - Method in class mgui.neuro.components.simple.SimpleSoma
setTimeStep(double) - Method in class mgui.models.dynamic.DynamicModelEngine
setTitle(String) - Method in class mgui.interfaces.plots.InterfacePlot
setTitle(String) - Method in class mgui.interfaces.plots.osp.InterfacePlotOsp
setTitle(InterfaceDisplayPanel, String) - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
setTitles() - Method in class mgui.interfaces.plots.sgt.InterfacePlotSgt
setTool(Tool) - Method in class mgui.interfaces.graphics.InterfaceGraphic: Sets the current tool.
setToolLock(boolean) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
setToolLock(boolean) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
setToolLock(boolean) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
setToolLock(boolean) - Method in class mgui.interfaces.InterfaceDisplayPanel
setTopoFile(File) - Method in class mgui.io.foreign.caret.CaretSurfaceLoader
setTopoFile(File) - Method in class mgui.io.foreign.caret.CaretSurfaceWriter
setTransferFunction(CorticalFunction) - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
setTranslate(double, double) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
setTranslateXY(Vector2d) - Method in class mgui.interfaces.maps.Camera3D
setTransparency(float) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
setTree(PipelineTree) - Method in class mgui.interfaces.pipelines.trees.TaskTreeNode
setTreeNode() - Method in class mgui.datasources.DataField
setTreeNode() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
setTreeNode() - Method in class mgui.interfaces.shapes.ShapeModel3D
setTreeNode() - Method in class mgui.models.environments.SimpleEnvironment
setTreeNode(InterfaceTreeNode) - Method in class mgui.datasources.DataConnection
setTreeNode(InterfaceTreeNode) - Method in class mgui.datasources.DataQuery
setTreeNode(InterfaceTreeNode) - Method in class mgui.datasources.DataSource
setTreeNode(InterfaceTreeNode) - Method in class mgui.datasources.DataTable
setTreeNode(InterfaceTreeNode) - Method in class mgui.datasources.DataTableSet
setTreeNode(InterfaceTreeNode) - Method in class mgui.datasources.LinkedDataStream
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.AbstractInterfaceObject
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.attributes.Attribute
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.attributes.AttributeList
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.graphics.Graphic2DGrid
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.graphics.util.Axes3D
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.InterfaceDisplayPanel
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.InterfaceOptions
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.InterfacePanel
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.InterfaceWorkspace
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.io.InterfaceFile
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.io.InterfaceIOType
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.maps.Camera3D
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.maps.Map3D
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.maps.NameMap
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.plots.InterfacePlot
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.plots.InterfacePlotDisplay
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.plots.mgui.PlotMap2D
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.plots.sgt.InterfacePlotSgt
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.plots.sgt.SgtAxis
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.plots.sgt.SgtPlotObject
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.projects.InterfaceProject
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.projects.ProjectDataItem
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.projects.ProjectDirectory
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.queries.InterfaceQuery
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.shapes.InterfaceShape: Constructs a tree node from this shape.
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.shapes.neuro.CorticalSurfaceSet3DInt
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.shapes.queries.InterfaceShapeQuery
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.shapes.SectionSet3DInt
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.shapes.Shape2DInt
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.shapes.ShapeModel3D
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.shapes.ShapeSet3DInt: Constructs a tree node from this shape.
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.shapes.VertexDataColumn
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.shapes.VolumeSet3DInt: Constructs a tree node from this shape.
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.tables.InterfaceTableModel
setTreeNode(InterfaceTreeNode) - Method in interface mgui.interfaces.trees.TreeObject: Sets the children for this node's InterfaceTreeNode.
setTreeNode(InterfaceTreeNode) - Method in class mgui.interfaces.variables.VariableInt
setTreeNode(InterfaceTreeNode) - Method in class mgui.models.dynamic.functions.Function
setTreeNode(InterfaceTreeNode) - Method in class mgui.models.updaters.PulseTrainUpdater.CurrentPulse
setTreeNode(InterfaceTreeNode) - Method in class mgui.models.updaters.PulseTrainUpdater
setTreeNode(InterfaceTreeNode) - Method in class mgui.models.updaters.SimpleEnvironmentUpdater
setTreeNode(InterfaceTreeNode) - Method in class mgui.neuro.components.AbstractAxon
setTreeNode(InterfaceTreeNode) - Method in class mgui.neuro.components.AbstractDendrite
setTreeNode(InterfaceTreeNode) - Method in class mgui.neuro.components.AbstractDendrites
setTreeNode(InterfaceTreeNode) - Method in class mgui.neuro.components.AbstractNeuron
setTreeNode(InterfaceTreeNode) - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalConnection
setTreeNode(InterfaceTreeNode) - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
setTreeNode(InterfaceTreeNode) - Method in class mgui.neuro.networks.AbstractNeuralNet
setTreeNode(InterfaceTreeNode) - Method in class mgui.neuro.networks.CorticalNetwork
setTreeNode(InterfaceTreeNode) - Method in class mgui.neuro.updaters.PulseTrainUpdater.CurrentPulse
setTreeNode(InterfaceTreeNode) - Method in class mgui.neuro.updaters.PulseTrainUpdater
setTreeNode(InterfaceTreeNode) - Method in class mgui.pipelines.InterfacePipeline
setTreeNode(InterfaceTreeNode) - Method in class mgui.pipelines.PipelineProcess
setTreeNode(InterfaceTreeNode) - Method in class mgui.pipelines.PipelineProcessInstance
setTreeNode(InterfaceTreeNode) - Method in class mgui.pipelines.TaskParameterInstance
setTreeNode(TreeListener) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
setTreeNodeLite(InterfaceTreeNode) - Method in class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt
setTrue(boolean) - Method in class mgui.numbers.MguiBoolean
setTuning(double) - Method in class mgui.neuro.components.simple.SimpleSensoryNeuron
setType - Variable in class mgui.io.foreign.vol.VolumeInputOptions
setType(int) - Method in class mgui.interfaces.maps.TypeMap
setType(int, String) - Method in class mgui.interfaces.maps.TypeMap
setType(EdgeType) - Method in class mgui.interfaces.graphs.AbstractGraphEdge
setType(String) - Method in class mgui.interfaces.graphics.video.VideoTaskType
setType(String) - Method in class mgui.interfaces.InterfacePanel
setType(String) - Method in class mgui.interfaces.io.InterfaceIOType
setType(String) - Method in class mgui.interfaces.maps.TypeMap
setType(String) - Method in class mgui.interfaces.projects.ProjectInstance
setTypes(HashMap<Integer, String>) - Method in class mgui.interfaces.maps.TypeMap
setUnion(AttributeList) - Method in class mgui.interfaces.attributes.AttributeList: Sets this AttributeList to the union of itself and list.
setUnion(AttributeList, boolean) - Method in class mgui.interfaces.attributes.AttributeList: Sets this AttributeList to the union of itself and list.
setUnit(SpatialUnit) - Method in class mgui.interfaces.shapes.InterfaceShape
setUnit(SpatialUnit) - Method in class mgui.interfaces.shapes.SectionSet3DInt: Does nothing for SectionSet3DInt; the unit is set by the parent set (or the the default from InterfaceEnvironment, if no parent is set.
setUnit(SpatialUnit) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
setUnit(SpatialUnit) - Method in interface mgui.interfaces.shapes.ShapeSet
setUnit(SpatialUnit) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
setUnitX(Unit) - Method in class mgui.interfaces.plots.sgt.SgtPlotObject: Sets the unit for the X values of this object.
setUnitY(Unit) - Method in class mgui.interfaces.plots.sgt.SgtPlotObject: Sets the unit for the Y values of this object.
setUnknownValue(double) - Method in class mgui.datasources.LinkedDataStream
setUpdateable(boolean) - Method in class mgui.interfaces.shapes.SectionSet3DInt
setUpdateClipBounds(boolean) - Method in class mgui.interfaces.maps.Map3D: Indicates whether this map should update the view clip bounds if its bounds are updated
setUpdater(Volume3DUpdater) - Method in class mgui.interfaces.shapes.Volume3DInt: Sets an updater class, descended from Volume3DUpdater, with which to update the data in this volume's grid.
setUpdater(DynamicModelUpdater) - Method in interface mgui.models.dynamic.DynamicModelEnvironment
setUpdater(DynamicModelUpdater) - Method in class mgui.models.environments.SimpleEnvironment
setUpVector(double, double, double) - Method in class mgui.interfaces.maps.Camera3D
setUpVector(Vector3d) - Method in class mgui.interfaces.maps.Camera3D
setUrl(String) - Method in class mgui.datasources.DataConnection
setUrl(String) - Method in class mgui.datasources.DataSourceDriver
setURL(URL) - Method in class mgui.io.FileLoader: Sets the current URL for this loader.
setURL(URL) - Method in class mgui.io.FileWriter
setURL(URL) - Method in interface mgui.io.InterfaceIO
setUrlReference(URL) - Method in class mgui.datasources.DataSourceDriver
setUrlReference(URL) - Method in interface mgui.interfaces.io.PersistentObject: Sets the URL reference for this persistent object; i.e., the location where its data were loaded and where it should be written.
setUrlReference(URL) - Method in class mgui.interfaces.shapes.InterfaceShape
setUserObject(Attribute<?>) - Method in class mgui.interfaces.attributes.tree.AttributeTreeNode
setUserObject(InterfaceObject) - Method in class mgui.interfaces.shapes.trees.Shape3DTreeNode
setUserObject(InterfaceObject) - Method in class mgui.interfaces.trees.InterfaceTreeNode
setUserObject(Shape2DInt) - Method in class mgui.interfaces.shapes.trees.Shape2DTreeNode
setV_Ca(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setV_K(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setV_L(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setV_Na(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setV_T(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setV_T_Ca(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setV_T_K(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setV_T_Na(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setV_T_V(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setV_T_Z(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setVal(double) - Method in class mgui.interfaces.tools.ToolInputEvent
setValue(boolean) - Method in class mgui.numbers.MguiBoolean
setValue(double) - Method in class mgui.numbers.MguiBoolean
setValue(double) - Method in class mgui.numbers.MguiDouble
setValue(double) - Method in class mgui.numbers.MguiFloat
setValue(double) - Method in class mgui.numbers.MguiInteger
setValue(double) - Method in class mgui.numbers.MguiLong
setValue(double) - Method in interface mgui.numbers.MguiNumber
setValue(double) - Method in class mgui.numbers.MguiShort
setValue(int) - Method in class mgui.interfaces.gui.InterfaceProgressBar: Sets the current value of the progress bar
setValue(Object) - Method in class mgui.datasources.DataField
setValue(Object) - Method in class mgui.interfaces.attributes.Attribute: Sets the value of this attribute, and notifies its listeners of the change.
setValue(Object, boolean) - Method in class mgui.interfaces.attributes.Attribute: Sets the value of this attribute.
setValue(Object, boolean) - Method in class mgui.interfaces.attributes.AttributeSelection
setValue(Object, boolean) - Method in class mgui.interfaces.attributes.AttributeSelectionMap: Sets the current value, either as a key (if value is a String), or as the mapped value (instance of V).
setValue(Object, boolean, boolean) - Method in class mgui.interfaces.attributes.Attribute: Sets the value of this attribute.
setValue(String) - Method in class mgui.numbers.MguiBoolean
setValue(String) - Method in class mgui.numbers.MguiDouble
setValue(String) - Method in class mgui.numbers.MguiFloat
setValue(String) - Method in class mgui.numbers.MguiInteger
setValue(String) - Method in class mgui.numbers.MguiLong
setValue(String) - Method in interface mgui.numbers.MguiNumber
setValue(String) - Method in class mgui.numbers.MguiShort
setValue(String, V) - Method in class mgui.interfaces.attributes.AttributeList: Sets the value of the attribute represented by name.
setValue(String, V, boolean) - Method in class mgui.interfaces.attributes.AttributeList
setValue(List<Integer>, String) - Method in class mgui.interfaces.variables.StringVectorInt
setValue(List<Integer>, MguiDouble) - Method in class mgui.interfaces.variables.MatrixInt
setValue(List<Integer>, T) - Method in class mgui.interfaces.variables.VariableInt: Sets the value at the given indices; throws an exception if they are out of bounds, this variable is not editable, or value is an inappropriate value.
setValue(List<Integer>, T) - Method in class mgui.interfaces.variables.VectorInt
setValue(Attribute<V>) - Method in class mgui.interfaces.attributes.AttributeList
setValue(MguiNumber) - Method in class mgui.numbers.MguiBoolean
setValue(MguiNumber) - Method in class mgui.numbers.MguiDouble
setValue(MguiNumber) - Method in class mgui.numbers.MguiFloat
setValue(MguiNumber) - Method in class mgui.numbers.MguiInteger
setValue(MguiNumber) - Method in class mgui.numbers.MguiLong
setValue(MguiNumber) - Method in interface mgui.numbers.MguiNumber
setValue(MguiNumber) - Method in class mgui.numbers.MguiShort
setValueAt(int, int, Object) - Method in class mgui.datasources.DataRecordSet: Sets the value of a specified field for a specified record.
setValueAt(int, int, Object) - Method in interface mgui.datasources.DataSet
setValueAt(Object, int, int) - Method in class mgui.interfaces.attributes.table.AttributeTableModel
setValueAt(Object, int, int) - Method in class mgui.interfaces.datasources.DataTableModel
setValueAt(Object, int, int) - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog.YTableModel
setValueAt(Object, int, int) - Method in class mgui.interfaces.plots.sgt.SgtScatterPlotDialog.XYTableModel
setValueAt(Object, int, int) - Method in class mgui.interfaces.shapes.InterfaceShapesPanel.VertexSelectionTableModel
setValueAt(Object, int, int) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel.OverlayVolumeTableModel
setValueAt(Object, int, int) - Method in class mgui.interfaces.trees.TreeTableModelAdapter
setValueAt(Object, int, int) - Method in class mgui.interfaces.variables.tables.VariableTableModel
setValueAt(Object, int, int) - Method in class mgui.io.domestic.maps.NameMapOutDialogBox.TableModel
setValueAt(Object, int, int) - Method in class mgui.io.domestic.shapes.PointSet2DInputDialogBox.TableModel
setValueAt(Object, int, int) - Method in class mgui.io.domestic.shapes.PointSet3DDataInputDialogBox.TableModel
setValueAt(Object, int, int) - Method in class mgui.io.domestic.shapes.PointSet3DInputDialogBox.TableModel
setValueAt(Object, int, int) - Method in class mgui.io.domestic.shapes.PolygonSet3DInputDialogBox.TableModel
setValueAt(Object, int, int) - Method in class mgui.io.domestic.shapes.ShapeInputDialogBox.TableModel
setValueAt(Object, int, int) - Method in class mgui.io.domestic.shapes.ShapeModel3DOutputDialog.TableModel
setValueAt(Object, int, int) - Method in class mgui.io.domestic.shapes.SurfaceDataInputDialogBox.TableModel
setValueAt(Object, int, int) - Method in class mgui.io.domestic.shapes.SurfaceDataOutputDialogBox.TableModel
setValueAt(Object, int, int) - Method in class mgui.io.domestic.shapes.SurfaceInputDialogBox.TableModel
setValueAt(Object, int, int) - Method in class mgui.io.domestic.shapes.VectorSet3DInputDialogBox.TableModel
setValueAt(Object, int, int) - Method in class mgui.io.domestic.variables.MatrixInDialogBox.TableModel
setValueAt(Object, Object, int) - Method in class mgui.interfaces.trees.AbstractTreeTableModel
setValueAt(Object, Object, int) - Method in interface mgui.interfaces.trees.TreeTableModel: Sets the value for node node, at column number column.
setValueAtVertex(int, MguiNumber) - Method in class mgui.interfaces.shapes.VertexDataColumn: Sets the value in this column for the vertex at index
setValueAtVoxel(int, int, int, MguiNumber) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn: Sets the value at voxel index [i, j, k]
setValueForced(String, V) - Method in class mgui.interfaces.attributes.AttributeList: Sets the value of the attribute represented by name; ignores the isEditable flag.
setValues(ArrayList<MguiNumber>) - Method in class mgui.interfaces.shapes.VertexDataColumn: Sets the values for this data column.
setValues(ArrayList<MguiNumber>, boolean) - Method in class mgui.interfaces.shapes.VertexDataColumn: Sets the values for this data column.
setValues(ArrayList<MguiNumber>, boolean, boolean) - Method in class mgui.interfaces.shapes.VertexDataColumn: Sets the values for this data column.
setValues(ArrayList<MguiNumber>, ArrayList<MguiNumber>) - Method in class mgui.stats.Histogram
setValues(List<T>) - Method in class mgui.interfaces.variables.VectorInt: Sets the values for this vector.
setValues(DataField) - Method in class mgui.interfaces.datasources.DataFieldTreeNode
setVar_Ca(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setVar_K(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setVar_Na(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setVar_V(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setVar_Z(double) - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
setVariable(VariableInt<?>) - Method in class mgui.interfaces.variables.tables.VariableTableModel
setVariables(NameMap) - Method in class mgui.interfaces.io.DataBridgeNamedXY
setVariableValues(String, Object) - Method in interface mgui.interfaces.math.VariableObject: Sets the variable's values with the values object, which must be a type acceptable to the variable object.
setVariableValues(String, Object) - Method in class mgui.interfaces.shapes.InterfaceShape
setVariableValues(String, Object, VertexSelection) - Method in class mgui.interfaces.shapes.InterfaceShape
setVector(Vector3f) - Method in class mgui.geometry.Vector3D
setVectorSet(VectorSet3DInt, int) - Method in class mgui.interfaces.shapes.Vector3DInt
setVersion(String) - Static method in class mgui.interfaces.InterfaceEnvironment
setVertex(int, Point3f) - Method in class mgui.geometry.Mesh3D
setVertex(int, Point3f) - Method in class mgui.geometry.PointSet3D
setVertexData(String, ArrayList<MguiNumber>) - Method in class mgui.interfaces.shapes.InterfaceShape: Sets the data in column.
setVertexData(String, ArrayList<MguiNumber>, boolean) - Method in class mgui.interfaces.shapes.InterfaceShape: Sets the data in column.
setVertexData(ArrayList<MguiNumber>) - Method in class mgui.interfaces.shapes.InterfaceShape: Sets the data in the current column.
setVertexDataMap(HashMap<String, ArrayList<MguiNumber>>) - Method in class mgui.interfaces.shapes.InterfaceShape: Sets the hash map specified the vertex-wise data associated with this shape.
setVertexDataMap(HashMap<String, ArrayList<MguiNumber>>) - Method in class mgui.interfaces.shapes.Shape2DInt
setVertexSelection(VertexSelection) - Method in class mgui.interfaces.shapes.InterfaceShape
setVertexSelection(VertexSelection) - Method in class mgui.interfaces.shapes.Shape2DInt
setVertexSelection(VertexSelection) - Method in class mgui.interfaces.shapes.Shape3DInt
setVertexShape(NodeShape) - Method in class mgui.interfaces.shapes.Shape2DInt
setVertices(ArrayList<Point2f>) - Method in class mgui.geometry.Circle2D
setVertices(ArrayList<Point2f>) - Method in class mgui.geometry.Ellipse2D
setVertices(ArrayList<Point2f>) - Method in class mgui.geometry.LineSegment2D
setVertices(ArrayList<Point2f>) - Method in class mgui.geometry.Point2D
setVertices(ArrayList<Point2f>) - Method in class mgui.geometry.PointSet2D
setVertices(ArrayList<Point2f>) - Method in class mgui.geometry.Polygon2D
setVertices(ArrayList<Point2f>) - Method in class mgui.geometry.Radius2D
setVertices(ArrayList<Point2f>) - Method in class mgui.geometry.Rect2D
setVertices(ArrayList<Point2f>) - Method in class mgui.geometry.Shape2D
setVertices(ArrayList<Point2f>) - Method in class mgui.geometry.Text2D
setVertices(ArrayList<Point2f>) - Method in class mgui.geometry.Triangle2D
setVertices(ArrayList<Point2f>) - Method in class mgui.geometry.Vector2D
setVertices(ArrayList<Point2f>) - Method in class mgui.morph.sections.RadialRep2D
setVertices(ArrayList<Point3f>) - Method in class mgui.geometry.Box3D
setVertices(ArrayList<Point3f>) - Method in class mgui.geometry.Cube3D
setVertices(ArrayList<Point3f>) - Method in class mgui.geometry.Graph3D
setVertices(ArrayList<Point3f>) - Method in class mgui.geometry.LineSegment3D
setVertices(ArrayList<Point3f>) - Method in class mgui.geometry.Mesh3D
setVertices(ArrayList<Point3f>) - Method in class mgui.geometry.Plane3D
setVertices(ArrayList<Point3f>) - Method in class mgui.geometry.PointSet3D
setVertices(ArrayList<Point3f>) - Method in class mgui.geometry.Polygon3D
setVertices(ArrayList<Point3f>) - Method in class mgui.geometry.Rect3D
setVertices(ArrayList<Point3f>) - Method in class mgui.geometry.Shape3D
setVertices(ArrayList<Point3f>) - Method in class mgui.geometry.Sphere3D
setVertices(ArrayList<Point3f>) - Method in class mgui.geometry.Triangle3D
setVertices(ArrayList<Point3f>) - Method in class mgui.geometry.Vector3D
setVertices(AbstractGraphNode, AbstractGraphNode) - Method in class mgui.interfaces.graphs.AbstractGraphEdge
setVertices(Point2f[]) - Method in class mgui.geometry.Shape2D
setVertices(Point3f[]) - Method in class mgui.geometry.Graph3D
setVertices(Point3f[]) - Method in class mgui.geometry.Polygon3D
setVertices(Point3f[]) - Method in class mgui.geometry.Shape3D
setVideo(Video) - Method in class mgui.io.domestic.videos.VideoInputOptions
setVideo(Video) - Method in class mgui.io.domestic.videos.VideoOutputOptions
setView(View3dInfo) - Method in class au.edu.unsw.cse.Viewer
setView(String) - Method in class au.edu.unsw.cse.Viewer: set the view direction.
setView(View3D) - Method in class mgui.interfaces.graphics.video.SetView3DTask
setView(View) - Method in class mgui.interfaces.maps.Map3D
SetView3DTask - Class in mgui.interfaces.graphics.video
SetView3DTask() - Constructor for class mgui.interfaces.graphics.video.SetView3DTask
SetView3DTask(long, long, View3D) - Constructor for class mgui.interfaces.graphics.video.SetView3DTask
SetView3DTask(long, long, View3D, boolean, boolean) - Constructor for class mgui.interfaces.graphics.video.SetView3DTask
SetView3DTaskDialogPanel - Class in mgui.interfaces.graphics.video: Dialog panel for a SetView3DTask.
SetView3DTaskDialogPanel() - Constructor for class mgui.interfaces.graphics.video.SetView3DTaskDialogPanel
SetView3DTaskDialogPanel(SetView3DTask) - Constructor for class mgui.interfaces.graphics.video.SetView3DTaskDialogPanel
setViewer() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
setViewFromCamera(Camera3D) - Method in class mgui.interfaces.graphics.View3D
setViewLock(boolean) - Method in class au.edu.unsw.cse.Viewer
setViewPlatformTransform(Transform3D) - Method in class mgui.interfaces.maps.Map3D: Deprecated.
setVisible(boolean) - Method in class mgui.interfaces.graphics.util.Axes3D
setVisible(boolean) - Method in class mgui.interfaces.shapes.InterfaceShape: Sets the visibility of this InterfaceShape to true.
setVolume(Volume3DInt) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
setVolume(Volume3DInt) - Method in class mgui.interfaces.shapes.volume.VolumeMaskOptions
setVolume(Volume3DInt) - Method in class mgui.neuro.components.cortical.CorticalVolume
setVolume(Volume3DInt) - Method in class mgui.neuro.components.CorticalVolume
setVolume3D(Volume3DInt, int, VolumeInputOptions) - Method in class mgui.io.domestic.shapes.VolumeFileLoader
setVolume3D(Volume3DInt, int, VolumeInputOptions, ProgressUpdater) - Method in class mgui.io.domestic.shapes.VolumeFileLoader
setVolume3D(Volume3DInt, String, int, VolumeInputOptions, ProgressUpdater) - Method in class mgui.io.domestic.shapes.VolumeFileLoader
setVolume3D(Volume3DInt, String, int, VolumeInputOptions, ProgressUpdater) - Method in class mgui.io.foreign.vol.VolFileLoader: Fills a grid with this file's data.
setVolume3D(Volume3DInt, VolumeInputOptions) - Method in class mgui.io.domestic.shapes.VolumeFileLoader
setVolume3DBlocking(Volume3DInt, String, int, VolumeInputOptions, ProgressUpdater) - Method in class mgui.io.domestic.shapes.VolumeFileLoader
setVolume3DBlocking(Volume3DInt, String, int, VolumeInputOptions, ProgressUpdater) - Method in class mgui.io.foreign.fsl.FSLVolumeLoader
setVolume3DBlocking(Volume3DInt, String, int, VolumeInputOptions, ProgressUpdater) - Method in class mgui.io.foreign.interfile.InterfileLoader
setVolume3DBlocking(Volume3DInt, String, int, VolumeInputOptions, ProgressUpdater) - Method in class mgui.io.foreign.vol.VolFileLoader
setVolume3DBlocking(Volume3DInt, String, int, VolumeInputOptions, ProgressUpdater) - Method in class mgui.io.foreign.wunil.WunilVolumeLoader
setVolume3DBlocking(Volume3DInt, String, int, VolumeInputOptions, ProgressUpdater) - Method in class mgui.io.standard.nifti.NiftiVolumeLoader
setVolume3DWorker(Volume3DInt, String, int, VolumeInputOptions, ProgressUpdater) - Method in class mgui.io.domestic.shapes.VolumeFileLoader
setVolumeMetadata(VolumeMetadata) - Method in class mgui.io.domestic.shapes.VolumeFileWriter: Sets the metadata for this volume.
setVolumeMetadata(VolumeMetadata) - Method in class mgui.io.standard.nifti.NiftiVolumeWriter
setVolumeSet(VolumeSet3DInt) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel.OverlayVolumeTableModel
setVoxelDim(int) - Method in interface mgui.interfaces.shapes.volume.VolumeMetadata: Sets the intravoxel dimension (e.g., time or vector/tensor information)
setVoxelDim(int) - Method in class mgui.io.foreign.fsl.FSLVolumeMetadata
setVoxelDim(int) - Method in class mgui.io.foreign.wunil.WunilDataset
setVoxelDim(int) - Method in class mgui.io.standard.nifti.NiftiMetadata
setVoxels(int[]) - Method in class mgui.neuro.components.cortical.CorticalVolume
setVoxels(int[]) - Method in class mgui.neuro.components.CorticalVolume
setWeight(double) - Method in class mgui.interfaces.graphs.DefaultGraphEdge
setWeight(double) - Method in interface mgui.interfaces.graphs.WeightedGraphEdge
setWeight(double) - Method in class mgui.neuro.components.cortical.AbstractCorticalConnection
setWeight(double) - Method in class mgui.neuro.components.simple.SimpleSynapse
setWeight(double) - Method in interface mgui.neuro.components.types.WeightedSynapse
setWeight(double, int, int) - Method in class mgui.morph.sections.MapWeight
setWeight(int) - Method in class mgui.morph.sections.MorphNodeMap2D
setWeights - Variable in class mgui.io.domestic.network.CorticalNetworkMatrixInOptions
setWidth(float) - Method in class mgui.interfaces.layouts.LayoutItem: Sets the width of this item, in document units.
setWindow(double, double, double, double) - Method in class au.edu.unsw.cse.View3d: Set the window on the UV plane
setWindow(double, double, double, double) - Method in class au.edu.unsw.cse.View3dInfo: Set the window on the UV plane
setWindow(double, double, double, double) - Method in class au.edu.unsw.cse.Viewer
setWindow(InterfaceGraphic3D) - Method in class mgui.interfaces.graphics.video.Video3D
setWindowMid(double) - Method in class mgui.image.util.WindowedColourModel
setWindowWidth(double) - Method in class mgui.image.util.WindowedColourModel
setWorkspace(InterfaceWorkspace) - Method in class mgui.datasources.DataSource
setWrapLines(boolean) - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
setWriteColumns(ArrayList<String>) - Method in class mgui.io.standard.gifti.GiftiOutputOptions: Sets the columns for which data will be written to the GIFTI file; an empty array, or null, indicates that no columns will be written.
setWriterOptions(InterfaceIOOptions) - Method in class mgui.datasources.DataSourceDriver
setWriterOptions(InterfaceIOOptions) - Method in interface mgui.interfaces.io.PersistentObject: Sets the options used to last write this object; can be null.
setWriterOptions(InterfaceIOOptions) - Method in class mgui.interfaces.shapes.InterfaceShape
setX(double) - Method in class mgui.interfaces.plots.XYData: Sets the X value for this pair
setX(String, List<T>) - Method in class mgui.interfaces.plots.PlotXYDataSource
setX(ArrayList<T>) - Method in class mgui.interfaces.plots.PlotTimeSeriesDataSource: Copies the X data series to this data source.
setX(ArrayList<T>) - Method in class mgui.interfaces.plots.VariablePlotTimeSeriesDataSource
setX(T) - Method in class mgui.interfaces.plots.XYData: Sets the X value for this pair
setXAngle(double) - Method in class mgui.interfaces.graphics.video.RotateView3DTask
setXColour(Color) - Method in class mgui.interfaces.shapes.TensorVolume3DInt
setXData(List<T>) - Method in class mgui.interfaces.io.DataBridgeXY
setXData(List<T>) - Method in interface mgui.interfaces.io.DataOutputStreamXY: Sets the X value for this output stream
setXMLRoot(String) - Method in class mgui.interfaces.shapes.InterfaceShape
setXMLRoot(String) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
setXMLType(XMLObject.XMLType) - Method in class mgui.io.domestic.graphs.GraphFileWriter: Sets the XML type for this writer.
setXPart(String) - Method in class mgui.interfaces.plots.VariablePlotTimeSeriesDataSource
setXPart(String, String) - Method in class mgui.interfaces.plots.VariablePlotXYDataSource
setXVariable(String) - Method in class mgui.interfaces.plots.VariablePlotTimeSeriesDataSource: Set the X variable, as a string of the form:
setXY(String, List<XYData<T>>) - Method in class mgui.interfaces.plots.PlotXYDataSource
setY(double) - Method in class mgui.interfaces.plots.XYData: Sets the Y value for this pair
setY(String, ArrayList<T>) - Method in class mgui.interfaces.plots.PlotTimeSeriesDataSource: Sets the full set of Y data for the channel named name.
setY(String, List<T>) - Method in class mgui.interfaces.plots.PlotXYDataSource
setY(List<String>, ArrayList<ArrayList<T>>) - Method in class mgui.interfaces.plots.PlotTimeSeriesDataSource: Copies the complete Y data series to this data source.
setY(T) - Method in class mgui.interfaces.plots.XYData: Sets the Y value for this pair
setYAngle(double) - Method in class mgui.interfaces.graphics.video.RotateView3DTask
setYColour(Color) - Method in class mgui.interfaces.shapes.TensorVolume3DInt
setYData(int, List<T>) - Method in class mgui.interfaces.io.DataBridgeXY
setYData(int, List<T>) - Method in interface mgui.interfaces.io.DataOutputStreamXY: Sets the Y data for the i'th channels of this output stream.
setYData(String, List<T>) - Method in class mgui.interfaces.io.DataBridgeNamedXY
setYData(String, List<T>) - Method in interface mgui.interfaces.io.DataOutputStreamNamedXY: Sets the Y data for the channel named channel.
setYData(List<List<T>>) - Method in class mgui.interfaces.io.DataBridgeXY
setYData(List<List<T>>) - Method in interface mgui.interfaces.io.DataOutputStreamXY: Sets the Y data for all channels of this output stream.
setYPart(String, String) - Method in class mgui.interfaces.plots.VariablePlotTimeSeriesDataSource
setYPart(String, String) - Method in class mgui.interfaces.plots.VariablePlotXYDataSource
setYScale(float) - Method in class mgui.interfaces.stats.HistogramPlot
setZ(int) - Method in class mgui.interfaces.shapes.util.GridSampleModel
setZColour(Color) - Method in class mgui.interfaces.shapes.TensorVolume3DInt
setZoom(double) - Method in class mgui.interfaces.maps.Map
setZoom(double) - Method in class mgui.interfaces.maps.Map2D
setZoom(double) - Method in class mgui.interfaces.maps.Map3D
setZoom(double, boolean) - Method in class mgui.interfaces.maps.Map2D: Sets the zoom; if center = true, maintains the window center point
setZoomRate(double) - Method in class mgui.interfaces.tools.graphics.ToolDZoom2D
setZoomRate(double) - Method in class mgui.interfaces.tools.graphics.ToolMouseOrbit3D
sform_code - Variable in class mgui.io.domestic.shapes.VolumeOutputOptions
sform_code - Variable in class mgui.io.standard.nifti.Nifti1Dataset
sgt_attribute - Variable in class mgui.interfaces.plots.sgt.SgtPlotObject
sgt_data - Variable in class mgui.interfaces.plots.sgt.SgtPlotObject
SgtAxis<A extends gov.noaa.pmel.sgt.Axis> - Class in mgui.interfaces.plots.sgt: Interface for displaying an axis on a plot.
SgtAxis(String, A, SgtPlotFunctions.AxisType) - Constructor for class mgui.interfaces.plots.sgt.SgtAxis
SgtCartesianLayout<T extends SgtPlotObject<?>> - Class in mgui.interfaces.plots.sgt: Abstract extension of SgtPlotObject for CartesianGraph objects.
SgtCartesianLayout() - Constructor for class mgui.interfaces.plots.sgt.SgtCartesianLayout
SgtCartesianLayout(String, Dimension) - Constructor for class mgui.interfaces.plots.sgt.SgtCartesianLayout
SgtLine - Class in mgui.interfaces.plots.sgt: A plotted line in a Scientific Graphics Toolkit (SGT) plot.
SgtLine() - Constructor for class mgui.interfaces.plots.sgt.SgtLine
SgtLineLayout - Class in mgui.interfaces.plots.sgt: Layout for SGT line plots.
SgtLineLayout() - Constructor for class mgui.interfaces.plots.sgt.SgtLineLayout
SgtLineLayout(String, Dimension) - Constructor for class mgui.interfaces.plots.sgt.SgtLineLayout
SgtMultilinePlot - Class in mgui.interfaces.plots.sgt: Displays a line plot using the Scientific Graphics Toolkit (SGT) library.
SgtMultilinePlot() - Constructor for class mgui.interfaces.plots.sgt.SgtMultilinePlot
SgtMultilinePlot(String) - Constructor for class mgui.interfaces.plots.sgt.SgtMultilinePlot
SgtMultilinePlotDialog - Class in mgui.interfaces.plots.sgt: Dialog box for specifying the source data, attributes, labels, and axes of a SGT multiline plot object.
SgtMultilinePlotDialog() - Constructor for class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog
SgtMultilinePlotDialog(JFrame, InterfacePlotOptions<SgtMultilinePlot>) - Constructor for class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog
SgtMultilinePlotDialog.YTableModel - Class in mgui.interfaces.plots.sgt
SgtPlotEvent - Class in mgui.interfaces.plots.sgt: Event on a InterfaceSgtPlot.
SgtPlotEvent(InterfacePlotSgt) - Constructor for class mgui.interfaces.plots.sgt.SgtPlotEvent
SgtPlotFunctions - Class in mgui.interfaces.plots.sgt: Utility class for Scientific Graphics Toolkit (SGT) plots.
SgtPlotFunctions() - Constructor for class mgui.interfaces.plots.sgt.SgtPlotFunctions
SgtPlotFunctions.AxisType - Enum in mgui.interfaces.plots.sgt: Available axis types; one of: X Y Z T
SgtPlotLayout<T extends SgtPlotObject<?>,G extends gov.noaa.pmel.sgt.Graph,A extends gov.noaa.pmel.sgt.Axis> - Class in mgui.interfaces.plots.sgt: The base layout panel for an SGT plot.
SgtPlotLayout(String, Dimension, SgtPlotLayout.GraphType) - Constructor for class mgui.interfaces.plots.sgt.SgtPlotLayout
SgtPlotLayout(SgtPlotLayout.GraphType) - Constructor for class mgui.interfaces.plots.sgt.SgtPlotLayout
SgtPlotLayout.GraphType - Enum in mgui.interfaces.plots.sgt
SgtPlotLayoutOptions - Class in mgui.interfaces.plots.sgt: Options defining an SGT plot layout
SgtPlotLayoutOptions() - Constructor for class mgui.interfaces.plots.sgt.SgtPlotLayoutOptions
SgtPlotListener - Interface in mgui.interfaces.plots.sgt: Defines an object which responds to events on an InterfacePlotSgt.
SgtPlotObject<T extends gov.noaa.pmel.sgt.dm.SGTData> - Class in mgui.interfaces.plots.sgt: A plottable object for a Scientific Graphics Toolkit (SGT) plot.
SgtPlotObject() - Constructor for class mgui.interfaces.plots.sgt.SgtPlotObject
SgtPointSet - Class in mgui.interfaces.plots.sgt: Represents a set of points for an Scientific Graphics Toolkit (SGT) plot.
SgtPointSet() - Constructor for class mgui.interfaces.plots.sgt.SgtPointSet
SgtPointSetLayout - Class in mgui.interfaces.plots.sgt: Layout for point sets.
SgtPointSetLayout() - Constructor for class mgui.interfaces.plots.sgt.SgtPointSetLayout
SgtPointSetLayout(String, Dimension) - Constructor for class mgui.interfaces.plots.sgt.SgtPointSetLayout
SgtScatterplot - Class in mgui.interfaces.plots.sgt: Displays an XY scatter plot using the Scientific Graphics Toolkit (SGT) library.
SgtScatterplot() - Constructor for class mgui.interfaces.plots.sgt.SgtScatterplot
SgtScatterplot(String) - Constructor for class mgui.interfaces.plots.sgt.SgtScatterplot
SgtScatterPlotDialog - Class in mgui.interfaces.plots.sgt: Dialog to allow user to specify source data and display options for an XY scatterplot.
SgtScatterPlotDialog() - Constructor for class mgui.interfaces.plots.sgt.SgtScatterPlotDialog
SgtScatterPlotDialog(JFrame, InterfacePlotOptions<SgtScatterplot>) - Constructor for class mgui.interfaces.plots.sgt.SgtScatterPlotDialog
SgtScatterPlotDialog.XYTableModel - Class in mgui.interfaces.plots.sgt
shade(int, int, Point3d, Point3d) - Method in class au.edu.unsw.cse.View3d: compute shading colour
shape - Variable in class mgui.interfaces.graphics.util.PickInfoShape2D
shape - Variable in class mgui.interfaces.shapes.queries.QueryShapeVertex
shape - Variable in class mgui.interfaces.shapes.util.Point2DShape
shape - Variable in class mgui.interfaces.shapes.util.ShapeVertexObject
shape - Variable in class mgui.io.domestic.shapes.ShapeDataInputOptions
shape - Variable in class mgui.io.domestic.shapes.ShapeInputOptions
shape - Variable in class mgui.io.domestic.shapes.xml.InterfaceShapeXMLHandler
Shape - Interface in mgui.geometry: This is the base interface for all shapes in mgui.
SHAPE_ALL - Static variable in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
SHAPE_AXIS1 - Static variable in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
SHAPE_AXIS2 - Static variable in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
SHAPE_AXIS3 - Static variable in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
SHAPE_BOX - Static variable in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
shape_engine - Variable in class mgui.interfaces.shapes.InterfaceShapesPanel
shape_group - Variable in class mgui.interfaces.shapes.Shape3DInt
shape_handler - Variable in class mgui.io.domestic.shapes.xml.ShapeSet3DXMLHandler
shape_listeners - Variable in class mgui.interfaces.shapes.ShapeModel3D
shape_model - Variable in class mgui.io.domestic.shapes.ShapeOutputOptions
shape_model - Variable in class mgui.io.domestic.shapes.xml.ShapeModel3DXMLHandler
shape_models - Variable in class mgui.interfaces.InterfaceWorkspace
shape_names - Variable in class mgui.io.foreign.pajek.PajekGraphInputOptions
shape_set - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
shape_set - Variable in class mgui.interfaces.shapes.Shape2DSectionNode
shape_set - Variable in class mgui.io.domestic.graphs.GraphInputOptions
shape_set - Variable in class mgui.io.domestic.shapes.ShapeInputOptions
shape_set - Variable in class mgui.io.domestic.shapes.xml.ShapeSet2DXMLHandler
shape_set - Variable in class mgui.io.domestic.shapes.xml.ShapeSet3DXMLHandler
shape_set_xml_handler - Variable in class mgui.io.domestic.shapes.xml.ShapeModel3DXMLHandler
shape_set_xml_handler - Variable in class mgui.io.domestic.shapes.xml.ShapeSet3DXMLHandler
shape_sets - Variable in class mgui.io.foreign.pajek.PajekGraphInputOptions
SHAPE_SPHERE - Static variable in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
SHAPE_WEDGE - Static variable in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
shape_xml_options - Variable in class mgui.io.domestic.shapes.ShapeModel3DOutputOptions
Shape2D - Class in mgui.geometry: Base class to be extended by all 2D shapes.
Shape2D() - Constructor for class mgui.geometry.Shape2D
Shape2DInt - Class in mgui.interfaces.shapes: Base class for all interfaces to 2D geometrical shapes.
Shape2DInt() - Constructor for class mgui.interfaces.shapes.Shape2DInt
Shape2DSectionNode - Class in mgui.interfaces.shapes
Shape2DSectionNode(SectionSet3DInt, int, ShapeSet2DInt) - Constructor for class mgui.interfaces.shapes.Shape2DSectionNode
Shape2DSelectionSet - Class in mgui.interfaces.shapes
Shape2DSelectionSet() - Constructor for class mgui.interfaces.shapes.Shape2DSelectionSet
Shape2DSelectionSet(String) - Constructor for class mgui.interfaces.shapes.Shape2DSelectionSet
Shape2DTreeNode - Class in mgui.interfaces.shapes.trees
Shape2DTreeNode() - Constructor for class mgui.interfaces.shapes.trees.Shape2DTreeNode
Shape2DTreeNode(Shape2DInt) - Constructor for class mgui.interfaces.shapes.trees.Shape2DTreeNode
shape3d - Variable in class mgui.interfaces.shapes.Shape3DInt
Shape3D - Class in mgui.geometry: Base class to be extended by all 3D shapes.
Shape3D() - Constructor for class mgui.geometry.Shape3D
Shape3DInt - Class in mgui.interfaces.shapes: Base class for all Shape3D interface objects.
Shape3DInt() - Constructor for class mgui.interfaces.shapes.Shape3DInt
Shape3DInt.VertexShapeTransformer - Class in mgui.interfaces.shapes: Transformer determines the rendering of vertices
shape3DObjects - Variable in class mgui.interfaces.graphics.InterfaceGraphic2D
Shape3DSceneNode - Class in mgui.interfaces.shapes: Holds a Java3D scene node representing a Shape3DInt object
Shape3DSceneNode(Shape3DInt) - Constructor for class mgui.interfaces.shapes.Shape3DSceneNode
Shape3DSceneNode(Shape3DInt, ShapeSelectionSet) - Constructor for class mgui.interfaces.shapes.Shape3DSceneNode
Shape3DTreeNode - Class in mgui.interfaces.shapes.trees: A tree node specialized for an instance of Shape3DInt.
Shape3DTreeNode() - Constructor for class mgui.interfaces.shapes.trees.Shape3DTreeNode
Shape3DTreeNode(Shape3DInt) - Constructor for class mgui.interfaces.shapes.trees.Shape3DTreeNode
Shape3DUpdater - Class in mgui.interfaces.shapes.util
Shape3DUpdater() - Constructor for class mgui.interfaces.shapes.util.Shape3DUpdater
Shape4DInt - Interface in mgui.interfaces.shapes.dynamic
shapeAdded - Variable in class mgui.interfaces.shapes.selection.ShapeSelectionSet
shapeAdded - Variable in class mgui.interfaces.shapes.Shape2DSelectionSet
ShapeAdded - mgui.interfaces.shapes.selection.ShapeSelectionEvent.EventType
ShapeAdded - mgui.interfaces.shapes.util.ShapeEvent.EventType
shapeAttr - Variable in class mgui.interfaces.shapes.SectionSet3DInt
shapeAttr - Variable in class mgui.morph.sections.MorphSections3DInt
ShapeAttribute<V> - Class in mgui.interfaces.shapes.attributes: Extends Attribute to indicate shape-specific parameters (e.g., whether a change to the value requires a redraw.
ShapeAttribute(String, Class<V>) - Constructor for class mgui.interfaces.shapes.attributes.ShapeAttribute: Instantiates a ShapeAttribute
ShapeAttribute(String, V) - Constructor for class mgui.interfaces.shapes.attributes.ShapeAttribute: Instantiates a ShapeAttribute
ShapeAttribute(String, V, boolean) - Constructor for class mgui.interfaces.shapes.attributes.ShapeAttribute: Instantiates a ShapeAttribute
ShapeAttribute(String, V, boolean, boolean) - Constructor for class mgui.interfaces.shapes.attributes.ShapeAttribute: Instantiates a ShapeAttribute
ShapeAttribute(String, V, boolean, boolean, boolean) - Constructor for class mgui.interfaces.shapes.attributes.ShapeAttribute: Instantiates a ShapeAttribute
ShapeAttribute(String, V, boolean, boolean, boolean, boolean) - Constructor for class mgui.interfaces.shapes.attributes.ShapeAttribute: Instantiates a ShapeAttribute
ShapeDataInputDialogBox - Class in mgui.io.domestic.shapes: Dialog box for ShapeDataLoader.
ShapeDataInputDialogBox() - Constructor for class mgui.io.domestic.shapes.ShapeDataInputDialogBox
ShapeDataInputDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.domestic.shapes.ShapeDataInputDialogBox
ShapeDataInputOptions - Class in mgui.io.domestic.shapes: Options for loading vertex-wise data into a shape.
ShapeDataInputOptions() - Constructor for class mgui.io.domestic.shapes.ShapeDataInputOptions
ShapeDataInputOptions.Format - Enum in mgui.io.domestic.shapes
ShapeDataLoader - Class in mgui.io.domestic.shapes: Loads vertex-wise data from tabular text files into shapes.
ShapeDataLoader() - Constructor for class mgui.io.domestic.shapes.ShapeDataLoader
ShapeDataLoader(File) - Constructor for class mgui.io.domestic.shapes.ShapeDataLoader
ShapeDestroyed - mgui.interfaces.shapes.util.ShapeEvent.EventType
ShapeEngine - Class in mgui.interfaces.shapes.util: Engine class for general shape functions.
ShapeEngine() - Constructor for class mgui.interfaces.shapes.util.ShapeEngine
ShapeEvent - Class in mgui.interfaces.shapes.util: Event on an InterfaceShape object.
ShapeEvent(InterfaceShape, ShapeEvent.EventType) - Constructor for class mgui.interfaces.shapes.util.ShapeEvent
ShapeEvent(InterfaceShape, ShapeEvent.EventType, boolean) - Constructor for class mgui.interfaces.shapes.util.ShapeEvent
ShapeEvent.EventType - Enum in mgui.interfaces.shapes.util
ShapeFunctions - Class in mgui.interfaces.shapes.util: Utility class which provides functions related to InterfaceShape objects generally.
ShapeFunctions() - Constructor for class mgui.interfaces.shapes.util.ShapeFunctions
ShapeFunctions.Point3fComparatorX - Class in mgui.interfaces.shapes.util
ShapeFunctions.Point3fComparatorY - Class in mgui.interfaces.shapes.util
ShapeFunctions.Point3fComparatorZ - Class in mgui.interfaces.shapes.util
ShapeInputDialogBox - Class in mgui.io.domestic.shapes: Dialog box for loading a ModelGUI shape.
ShapeInputDialogBox() - Constructor for class mgui.io.domestic.shapes.ShapeInputDialogBox
ShapeInputDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.domestic.shapes.ShapeInputDialogBox
ShapeInputDialogBox.TableModel - Class in mgui.io.domestic.shapes
ShapeInputOptions - Class in mgui.io.domestic.shapes: Options for loading an InterfaceShape object.
ShapeInputOptions() - Constructor for class mgui.io.domestic.shapes.ShapeInputOptions
ShapeInserted - mgui.interfaces.shapes.util.ShapeEvent.EventType
ShapeIOException - Exception in mgui.io.domestic.shapes: I/O exception on a shape loading process
ShapeIOException(IOException) - Constructor for exception mgui.io.domestic.shapes.ShapeIOException
ShapeIOException(String) - Constructor for exception mgui.io.domestic.shapes.ShapeIOException
shapeList - Variable in class mgui.interfaces.graphics.InterfaceGraphic2D
ShapeListener - Interface in mgui.interfaces.shapes.util: Specifies an object that listens to events on an InterfaceShape.
shapeListeners - Variable in class mgui.interfaces.shapes.InterfaceShape
ShapeModel3D - Class in mgui.interfaces.shapes: The top container for all shape interfaces.
ShapeModel3D() - Constructor for class mgui.interfaces.shapes.ShapeModel3D
ShapeModel3D(String) - Constructor for class mgui.interfaces.shapes.ShapeModel3D
ShapeModel3D(String, ShapeSet3DInt) - Constructor for class mgui.interfaces.shapes.ShapeModel3D
ShapeModel3D(String, ShapeSet3DInt, SpatialUnit) - Constructor for class mgui.interfaces.shapes.ShapeModel3D
ShapeModel3DInputDialog - Class in mgui.io.domestic.shapes: Dialog box for specifying options to load a ShapeModel3D object into the workspace.
ShapeModel3DInputDialog() - Constructor for class mgui.io.domestic.shapes.ShapeModel3DInputDialog
ShapeModel3DInputDialog(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.domestic.shapes.ShapeModel3DInputDialog
ShapeModel3DInputOptions - Class in mgui.io.domestic.shapes: Options for loading a ShapeModel3D object.
ShapeModel3DInputOptions() - Constructor for class mgui.io.domestic.shapes.ShapeModel3DInputOptions
ShapeModel3DListener - Interface in mgui.interfaces.shapes: Object which listens to events on a ShapeModel3D object.
ShapeModel3DLoader - Class in mgui.io.domestic.shapes: Loader for a ShapeModel3D.
ShapeModel3DLoader() - Constructor for class mgui.io.domestic.shapes.ShapeModel3DLoader
ShapeModel3DOutputDialog - Class in mgui.io.domestic.shapes: Dialog box for specifying the XML output of a ShapeModel3D.
ShapeModel3DOutputDialog() - Constructor for class mgui.io.domestic.shapes.ShapeModel3DOutputDialog
ShapeModel3DOutputDialog(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.domestic.shapes.ShapeModel3DOutputDialog
ShapeModel3DOutputDialog.TableModel - Class in mgui.io.domestic.shapes
ShapeModel3DOutputOptions - Class in mgui.io.domestic.shapes: Specifies options for writing a ShapeModel3D object to XML.
ShapeModel3DOutputOptions() - Constructor for class mgui.io.domestic.shapes.ShapeModel3DOutputOptions
ShapeModel3DOutputOptions(ShapeModel3D) - Constructor for class mgui.io.domestic.shapes.ShapeModel3DOutputOptions
ShapeModel3DTreeNode - Class in mgui.interfaces.shapes.trees: Tree node specialized for a ShapeModel3D object.
ShapeModel3DTreeNode() - Constructor for class mgui.interfaces.shapes.trees.ShapeModel3DTreeNode
ShapeModel3DTreeNode(ShapeModel3D) - Constructor for class mgui.interfaces.shapes.trees.ShapeModel3DTreeNode
ShapeModel3DTreeNode(ShapeModel3D, JTree) - Constructor for class mgui.interfaces.shapes.trees.ShapeModel3DTreeNode
ShapeModel3DWriter - Class in mgui.io.domestic.shapes: Writes a ShapeModel3D object to XML.
ShapeModel3DWriter() - Constructor for class mgui.io.domestic.shapes.ShapeModel3DWriter
ShapeModel3DWriter(File) - Constructor for class mgui.io.domestic.shapes.ShapeModel3DWriter
ShapeModel3DXMLHandler - Class in mgui.io.domestic.shapes.xml: XML handler for a ShapeModel3D object.
ShapeModel3DXMLHandler() - Constructor for class mgui.io.domestic.shapes.xml.ShapeModel3DXMLHandler: Instantiates a handler with no pre-specified shape model.
ShapeModel3DXMLHandler(ShapeModel3D) - Constructor for class mgui.io.domestic.shapes.xml.ShapeModel3DXMLHandler: Instantiates a handler with a specified ShapeModel3D.
shapeModelChanged(ShapeModelEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
shapeModelChanged(ShapeModelEvent) - Method in class mgui.interfaces.InterfaceDisplayPanel
shapeModelChanged(ShapeModelEvent) - Method in class mgui.interfaces.InterfaceWorkspace
shapeModelChanged(ShapeModelEvent) - Method in interface mgui.interfaces.shapes.ShapeModel3DListener: Fired when a ShapeModel3D is changed in some way.
ShapeModelEvent - Class in mgui.interfaces.shapes: Represents an event on a ShapeModel3D object.
ShapeModelEvent(ShapeModel3D, ShapeModelEvent.EventType) - Constructor for class mgui.interfaces.shapes.ShapeModelEvent
ShapeModelEvent.EventType - Enum in mgui.interfaces.shapes
ShapeModified - mgui.interfaces.shapes.util.ShapeEvent.EventType
ShapeMoved - mgui.interfaces.shapes.util.ShapeEvent.EventType
shapeNode - Variable in class mgui.interfaces.shapes.ShapeSceneNode
ShapeOutputDialogBox - Class in mgui.io.domestic.shapes: Dialog box for output of InterfaceShape objects.
ShapeOutputDialogBox() - Constructor for class mgui.io.domestic.shapes.ShapeOutputDialogBox
ShapeOutputDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.domestic.shapes.ShapeOutputDialogBox
ShapeOutputOptions - Class in mgui.io.domestic.shapes: Output options for an InterfaceShapeWriter.
ShapeOutputOptions() - Constructor for class mgui.io.domestic.shapes.ShapeOutputOptions
ShapePanel2D - Interface in mgui.interfaces.shapes: Interface for panels hosting 2D shapes
ShapeRemoved - mgui.interfaces.shapes.selection.ShapeSelectionEvent.EventType
ShapeRemoved - mgui.interfaces.shapes.util.ShapeEvent.EventType
shapes - Variable in class mgui.geometry.util.NodeShape
shapes - Variable in class mgui.interfaces.shapes.selection.ShapeSelectionSet
shapes - Variable in class mgui.interfaces.shapes.Shape2DSelectionSet
shapes - Variable in class mgui.io.domestic.shapes.ShapeOutputOptions
shapes_folder - Variable in class mgui.io.domestic.shapes.ShapeModel3DOutputOptions
ShapeSceneNode - Class in mgui.interfaces.shapes
ShapeSceneNode() - Constructor for class mgui.interfaces.shapes.ShapeSceneNode
shapeSection - Variable in class mgui.io.standard.xml.svg.SVGInputOptions
shapeSelectionChanged(ShapeSelectionEvent) - Method in class mgui.interfaces.InterfaceSelectionPanel
shapeSelectionChanged(ShapeSelectionEvent) - Method in class mgui.interfaces.queries.InterfaceQueryPanel
shapeSelectionChanged(ShapeSelectionEvent) - Method in class mgui.interfaces.shapes.selection.InterfaceSelectionSet
shapeSelectionChanged(ShapeSelectionEvent) - Method in interface mgui.interfaces.shapes.selection.ShapeSelectionListener
shapeSelectionChanged(ShapeSelectionEvent) - Method in class mgui.interfaces.shapes.ShapeModel3D
ShapeSelectionEvent - Class in mgui.interfaces.shapes.selection
ShapeSelectionEvent(ShapeSelectionSet) - Constructor for class mgui.interfaces.shapes.selection.ShapeSelectionEvent
ShapeSelectionEvent(ShapeSelectionSet, ShapeSelectionEvent.EventType) - Constructor for class mgui.interfaces.shapes.selection.ShapeSelectionEvent
ShapeSelectionEvent.EventType - Enum in mgui.interfaces.shapes.selection
ShapeSelectionListener - Interface in mgui.interfaces.shapes.selection
ShapeSelectionSet - Class in mgui.interfaces.shapes.selection
ShapeSelectionSet() - Constructor for class mgui.interfaces.shapes.selection.ShapeSelectionSet
ShapeSelectionSet(String) - Constructor for class mgui.interfaces.shapes.selection.ShapeSelectionSet
ShapeSelectionSet(ShapeSelectionSet) - Constructor for class mgui.interfaces.shapes.selection.ShapeSelectionSet
shapeSet - Variable in class mgui.io.domestic.shapes.PointSet3DInputOptions
shapeSet - Variable in class mgui.io.domestic.shapes.SurfaceInputOptions
shapeSet - Variable in class mgui.io.domestic.shapes.VectorSet3DInputOptions
shapeSet - Variable in class mgui.io.domestic.shapes.VolumeInputOptions
shapeSet - Variable in class mgui.morph.sections.InterfaceMorphPanel
shapeSet - Variable in class mgui.morph.sections.InterfaceMorphPanel2
shapeSet - Variable in class mgui.morph.sections.InterfaceRadialRep
shapeSet - Variable in class mgui.morph.sections.InterfaceRadialRep2
ShapeSet - Interface in mgui.interfaces.shapes: Interface for all shape sets.
ShapeSet2DInt - Class in mgui.interfaces.shapes: Represents a set of Shape2DInt objects.
ShapeSet2DInt() - Constructor for class mgui.interfaces.shapes.ShapeSet2DInt
ShapeSet2DXMLHandler - Class in mgui.io.domestic.shapes.xml: XML handler for a ShapeSet2DInt object.
ShapeSet2DXMLHandler() - Constructor for class mgui.io.domestic.shapes.xml.ShapeSet2DXMLHandler
ShapeSet3DInt - Class in mgui.interfaces.shapes: Represents a set of Shape3DInt objects.
ShapeSet3DInt() - Constructor for class mgui.interfaces.shapes.ShapeSet3DInt
ShapeSet3DInt(String) - Constructor for class mgui.interfaces.shapes.ShapeSet3DInt
ShapeSet3DXMLHandler - Class in mgui.io.domestic.shapes.xml: XML handler for a ShapeSet3DInt object.
ShapeSet3DXMLHandler(ShapeSet3DInt) - Constructor for class mgui.io.domestic.shapes.xml.ShapeSet3DXMLHandler
ShapeSetModified - mgui.interfaces.shapes.util.ShapeEvent.EventType
ShapeStatsPanel - Class in mgui.interfaces.shapes: Interface panel for performing statistical procedures on shapes.
ShapeStatsPanel() - Constructor for class mgui.interfaces.shapes.ShapeStatsPanel
ShapeSummaryQuery - Class in mgui.interfaces.shapes.queries: Extension of InterfaceShapeQuery to provide summary values for a shape, or a vertex selection within that shape.
ShapeSummaryQuery(String) - Constructor for class mgui.interfaces.shapes.queries.ShapeSummaryQuery
ShapeTreeCellEditor - Class in mgui.interfaces.shapes.trees
ShapeTreeCellEditor() - Constructor for class mgui.interfaces.shapes.trees.ShapeTreeCellEditor
ShapeTreeCellRenderer - Class in mgui.interfaces.shapes.trees
ShapeTreeCellRenderer() - Constructor for class mgui.interfaces.shapes.trees.ShapeTreeCellRenderer
ShapeTreeNode - Class in mgui.interfaces.shapes.trees: Provides a tree node for an instance of InterfaceShape.
ShapeTreeNode() - Constructor for class mgui.interfaces.shapes.trees.ShapeTreeNode
shapeUpdated(ShapeEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
shapeUpdated(ShapeEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
shapeUpdated(ShapeEvent) - Method in class mgui.interfaces.graphics.View3D
shapeUpdated(ShapeEvent) - Method in class mgui.interfaces.InterfaceComboPanel
shapeUpdated(ShapeEvent) - Method in class mgui.interfaces.InterfaceDisplayPanel
shapeUpdated(ShapeEvent) - Method in class mgui.interfaces.InterfacePanel
shapeUpdated(ShapeEvent) - Method in class mgui.interfaces.InterfaceSelectionPanel
shapeUpdated(ShapeEvent) - Method in class mgui.interfaces.shapes.InterfaceSectionSetPanel
shapeUpdated(ShapeEvent) - Method in class mgui.interfaces.shapes.mesh.InterfaceMeshPanel
shapeUpdated(ShapeEvent) - Method in class mgui.interfaces.shapes.SectionSet3DInt
shapeUpdated(ShapeEvent) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
shapeUpdated(ShapeEvent) - Method in class mgui.interfaces.shapes.Shape2DInt
shapeUpdated(ShapeEvent) - Method in class mgui.interfaces.shapes.Shape2DSectionNode
shapeUpdated(ShapeEvent) - Method in class mgui.interfaces.shapes.Shape3DSceneNode
shapeUpdated(ShapeEvent) - Method in class mgui.interfaces.shapes.ShapeModel3D
shapeUpdated(ShapeEvent) - Method in class mgui.interfaces.shapes.ShapeSceneNode
shapeUpdated(ShapeEvent) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
shapeUpdated(ShapeEvent) - Method in class mgui.interfaces.shapes.ShapeSet3DInt: Responds to a change in a member shape.
shapeUpdated(ShapeEvent) - Method in class mgui.interfaces.shapes.trees.ShapeModel3DTreeNode
shapeUpdated(ShapeEvent) - Method in class mgui.interfaces.shapes.trees.ShapeTreeNode: Respond to a shape event on this node's ShapeInt.
shapeUpdated(ShapeEvent) - Method in interface mgui.interfaces.shapes.util.ShapeListener: A shape that this object is listening to has been updated.
shapeUpdated(ShapeEvent) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
shapeUpdated(ShapeEvent) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel
shapeUpdated(ShapeEvent) - Method in class mgui.interfaces.shapes.Volume3DInt
shapeUpdated(ShapeEvent) - Method in class mgui.interfaces.shapes.VolumeSet3DInt
shapeUpdated(ShapeEvent) - Method in class mgui.morph.sections.RadialRep2DInt
ShapeVertexObject - Class in mgui.interfaces.shapes.util: Used as a user object for a Java3D Node representing a single vertex.
ShapeVertexObject(Shape3DInt, int) - Constructor for class mgui.interfaces.shapes.util.ShapeVertexObject
ShapeXMLFunctions - Class in mgui.io.domestic.shapes.xml: Utility class for methods related specifically to XML representations of Shape or InterfaceShape objects.
ShapeXMLFunctions() - Constructor for class mgui.io.domestic.shapes.xml.ShapeXMLFunctions
ShapeXmlLoader - Class in mgui.io.domestic.shapes: Loader for an InterfaceShape stored in domestic XML format.
ShapeXmlLoader() - Constructor for class mgui.io.domestic.shapes.ShapeXmlLoader
ShapeXmlLoader(File) - Constructor for class mgui.io.domestic.shapes.ShapeXmlLoader
ShapeXmlWriter - Class in mgui.io.domestic.shapes: Writes an InterfaceShape object to XML.
ShapeXmlWriter() - Constructor for class mgui.io.domestic.shapes.ShapeXmlWriter
ShapeXmlWriter(File) - Constructor for class mgui.io.domestic.shapes.ShapeXmlWriter
sharedNode - Variable in class mgui.interfaces.shapes.ShapeSet3DInt
shear(double, double, Point2D) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
sheet_name - Variable in class mgui.io.domestic.datasources.ExportDataTableExcelOptions
shift_pressed - Variable in class mgui.interfaces.tools.ToolInputEvent
Short - mgui.interfaces.xml.XMLObject.XMLType
Short - mgui.io.domestic.shapes.ShapeDataInputOptions.Format
SHORT - Static variable in class mgui.datasources.DataTypes
short_name - Variable in class mgui.util.ScaledUnit
shortToByteArray(int, ByteOrder) - Static method in class mgui.io.util.IoFunctions
shouldSelectCell(EventObject) - Method in class mgui.interfaces.trees.AbstractTreeCellEditor
show - Variable in class mgui.interfaces.graphs.util.GraphFunctions.ArrowVisibility
show - Variable in class mgui.interfaces.graphs.util.GraphFunctions.EdgeVisibility
show - Variable in class mgui.interfaces.graphs.util.GraphFunctions.GraphEdgeLabelRenderer
show - Variable in class mgui.interfaces.graphs.util.GraphFunctions.GraphNodeLabelRenderer
show - Variable in class mgui.interfaces.graphs.util.GraphFunctions.NodeVisibility
show() - Method in class mgui.interfaces.graphs.util.GraphFunctions.GraphEdgeLabelRenderer
show() - Method in class mgui.interfaces.graphs.util.GraphFunctions.GraphNodeLabelRenderer
show(boolean) - Method in class mgui.interfaces.graphs.util.GraphFunctions.ArrowVisibility
show(boolean) - Method in class mgui.interfaces.graphs.util.GraphFunctions.EdgeVisibility
show(boolean) - Method in class mgui.interfaces.graphs.util.GraphFunctions.GraphEdgeLabelRenderer
show(boolean) - Method in class mgui.interfaces.graphs.util.GraphFunctions.GraphNodeLabelRenderer
show(boolean) - Method in class mgui.interfaces.graphs.util.GraphFunctions.NodeVisibility
show(MouseEvent) - Method in class mgui.interfaces.menus.InterfacePopupMenu
show_arrows - Variable in class mgui.interfaces.graphs.InterfaceGraphDisplay
show_arrows - Variable in class mgui.interfaces.shapes.graphs.Graph2DInt
show_edges - Variable in class mgui.interfaces.graphs.InterfaceGraphDisplay
show_edges - Variable in class mgui.interfaces.shapes.graphs.Graph2DInt
show_icon - Variable in class mgui.interfaces.gui.InterfaceComboBoxRenderer
show_icons - Variable in class mgui.interfaces.gui.InterfaceComboBoxBak
show_in_composite - Variable in class mgui.interfaces.shapes.Volume3DInt
show_nodes - Variable in class mgui.interfaces.graphs.InterfaceGraphDisplay
show_progress - Variable in class mgui.interfaces.tools.dialogs.DialogTool
show_vertices - Variable in class mgui.interfaces.shapes.graphs.Graph2DInt
show_volumes_3d - Variable in class mgui.interfaces.neuro.CorticalThicknessOptions
show2D() - Method in class mgui.interfaces.shapes.InterfaceShape
show2D() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
show2D() - Method in interface mgui.interfaces.shapes.ShapeSet
show2D(boolean) - Method in class mgui.interfaces.shapes.InterfaceShape: Specifies whether to show this shape in 2D.
show3D() - Method in class mgui.interfaces.shapes.InterfaceShape
show3D() - Method in class mgui.interfaces.shapes.LPolygon2DInt
show3D() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
show3D() - Method in interface mgui.interfaces.shapes.ShapeSet
show3D(boolean) - Method in class mgui.interfaces.shapes.InterfaceShape: Specifies whether to show this shape in 2D.
showAnchors - Variable in class mgui.interfaces.maps.ContinuousColourBar
showAttributeDialog(AttributeObject) - Method in class mgui.interfaces.InterfaceWorkspace
showBaseGrid() - Method in class mgui.interfaces.shapes.dynamic.Volume4DInt
showBaseGrid(boolean) - Method in class mgui.interfaces.shapes.dynamic.Volume4DInt
showChooser() - Method in class mgui.interfaces.gui.FileButton
showData() - Method in class mgui.interfaces.shapes.InterfaceShape
showData(boolean) - Method in class mgui.interfaces.shapes.InterfaceShape
showDialog() - Method in class mgui.interfaces.datasources.EditQueryDialogBox
showDialog() - Static method in class mgui.interfaces.gui.FontDialog
showDialog() - Method in class mgui.interfaces.io.InterfaceIODialogBox: Override to update dialog from options before showing
showDialog() - Static method in class mgui.interfaces.neuro.imaging.camino.CaminoProcessDialogBox
showDialog() - Static method in class mgui.interfaces.neuro.imaging.camino.CaminoTaskDialogBox
showDialog() - Static method in class mgui.interfaces.pipelines.PipelineProcessDialogBox
showDialog() - Static method in class mgui.interfaces.pipelines.PipelineProcessInstanceDialogBox
showDialog() - Static method in class mgui.interfaces.projects.InterfaceProjectDialogBox
showDialog() - Method in class mgui.io.domestic.datasources.ExportDataTableDialogBox
showDialog() - Method in class mgui.io.domestic.datasources.ImportDataTableDialogBox
showDialog() - Method in class mgui.io.domestic.network.CorticalNetworkMatrixInDialogBox
showDialog() - Method in class mgui.io.domestic.shapes.PointSet2DInputDialogBox
showDialog() - Method in class mgui.io.domestic.shapes.PointSet3DDataInputDialogBox
showDialog() - Method in class mgui.io.domestic.shapes.PointSet3DInputDialogBox
showDialog() - Method in class mgui.io.domestic.shapes.PolygonSet3DInputDialogBox
showDialog() - Method in class mgui.io.domestic.shapes.ShapeDataInputDialogBox
showDialog() - Method in class mgui.io.domestic.shapes.ShapeInputDialogBox
showDialog() - Method in class mgui.io.domestic.shapes.ShapeModel3DOutputDialog
showDialog() - Method in class mgui.io.domestic.shapes.SurfaceDataInputDialogBox
showDialog() - Method in class mgui.io.domestic.shapes.SurfaceInputDialogBox
showDialog() - Method in class mgui.io.domestic.shapes.VectorSet3DInputDialogBox
showDialog() - Method in class mgui.io.domestic.variables.MatrixInDialogBox
showDialog() - Method in class mgui.io.foreign.caret.CaretAreaColourInDialogBox
showDialog() - Method in class mgui.io.foreign.caret.CaretSurfaceOutDialogBox
showDialog() - Method in class mgui.io.foreign.freesurfer.FreesurferVertexDataDialogBox
showDialog() - Method in class mgui.io.standard.gifti.GiftiSurfaceOutDialogBox
showDialog(boolean, String, Component) - Method in class mgui.interfaces.gui.ColourButton
showDialog(Font) - Static method in class mgui.interfaces.gui.FontDialog
showDialog(JFrame) - Static method in class mgui.interfaces.plots.NewPlotDialog
showDialog(JFrame, String, BasicStroke) - Static method in class mgui.interfaces.gui.LineStyleDialog
showDialog(JFrame, DataQuery) - Static method in class mgui.interfaces.datasources.EditQueryDialogBox: Static method to show this dialog and return the updated query.
showDialog(JFrame, ScalpAndSkullModelOptions) - Static method in class mgui.interfaces.shapes.neuro.NeuroMeshOptionsDialog
showDialog(JFrame, DataFieldOptions) - Static method in class mgui.interfaces.datasources.EditDataFieldDialogBox
showDialog(JFrame, DataTableOptions) - Static method in class mgui.interfaces.datasources.EditDataTableDialog
showDialog(JFrame, DataTableOptions, HashMap<String, String>) - Static method in class mgui.interfaces.datasources.EditDataTableDialog
showDialog(JFrame, ContinuousColourMap) - Static method in class mgui.interfaces.gui.ColourBarOutDialog
showDialog(JFrame, InterfacePlotOptions<?>) - Method in class mgui.interfaces.plots.InterfacePlotDialog
showDialog(JFrame, InterfacePlotOptions<?>) - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog
showDialog(JFrame, InterfacePlotOptions<?>) - Method in class mgui.interfaces.plots.sgt.SgtScatterPlotDialog
showDialog(JFrame, ProjectDirectory) - Static method in class mgui.interfaces.projects.ProjectDirectoryDialogBox
showDialog(AttributeObject) - Method in class mgui.interfaces.attributes.AttributeDialogBox
showDialog(DataSourceDriverOptions) - Static method in class mgui.interfaces.datasources.DataSourceDriverDialogBox: Shows a new dialog and blocks until it has closed.
showDialog(InterfaceFrame, Matrix4d) - Static method in class mgui.interfaces.gui.MatrixEditorDialog
showDialog(CaminoProcessOptions) - Static method in class mgui.interfaces.neuro.imaging.camino.CaminoProcessDialogBox
showDialog(PipelineProcessOptions) - Static method in class mgui.interfaces.pipelines.PipelineProcessDialogBox
showDialog(InterfaceProject) - Static method in class mgui.interfaces.projects.InterfaceProjectDialogBox
showDialog(ProjectOptions) - Static method in class mgui.interfaces.projects.util.ConsolidateDirectoriesDialogBox
showDialog(DataSourceLinkOptions) - Static method in class mgui.interfaces.shapes.datasources.DataSourceLinkDialogBox
showDialog(ExportDataTableTextOptions) - Static method in class mgui.io.domestic.datasources.ExportDataTableDialogBox
showDialog(ImportDataTableTextOptions) - Static method in class mgui.io.domestic.datasources.ImportDataTableDialogBox
showDialog(InterfaceIOPanel, VolumeInputOptions, boolean) - Static method in class mgui.io.domestic.shapes.VolumeInputDialogBox
showDialog(PipelineProcessInstance) - Static method in class mgui.interfaces.pipelines.PipelineProcessInstanceDialogBox
showDialog(PipelineTask) - Static method in class mgui.interfaces.neuro.imaging.camino.CaminoTaskDialogBox
showDivisions - Variable in class mgui.interfaces.maps.ContinuousColourBar
showErrorsOnConsole() - Static method in class mgui.interfaces.InterfaceSession
showFrame(InitListener) - Static method in class mgui.interfaces.startup.InitFrame
showHelp() - Method in class mgui.pipelines.JavaProcess
showHelp() - Method in class mgui.pipelines.NativeProcess
showHelp() - Method in class mgui.pipelines.PipelineProcess: Attempt to display the associated help message
showInComposite(String) - Method in class mgui.interfaces.shapes.Volume3DInt: Returns whether column's data is to be included in the composite image.
showInComposite(String, boolean) - Method in class mgui.interfaces.shapes.Volume3DInt: Sets whether to include column's data in the composite image
showInComposite(String, boolean, boolean) - Method in class mgui.interfaces.shapes.Volume3DInt: Sets whether to include column's data in the composite image.
showLabel(boolean) - Method in class mgui.interfaces.gui.ColourButton
showPanel() - Method in class mgui.interfaces.datasources.InterfaceDatasourcePanel
showPanel() - Method in class mgui.interfaces.graphics.InterfaceGraphicPanel
showPanel() - Method in class mgui.interfaces.InterfacePanel: This method is called when a panel is displayed.
showPanel() - Method in class mgui.interfaces.InterfaceSelectionPanel
showPanel() - Method in class mgui.interfaces.io.InterfaceFilePanel
showPanel() - Method in class mgui.interfaces.layouts.InterfaceLayoutPanel
showPanel() - Method in class mgui.interfaces.maps.InterfaceMapPanel
showPanel() - Method in class mgui.interfaces.neuro.imaging.camino.InterfaceCaminoPanel
showPanel() - Method in class mgui.interfaces.neuro.InterfaceCorticalThicknessPanel
showPanel() - Method in class mgui.interfaces.pipelines.InterfacePipelinesPanel
showPanel() - Method in class mgui.interfaces.projects.InterfaceProjectPanel
showPanel() - Method in class mgui.interfaces.queries.InterfaceQueryPanel
showPanel() - Method in class mgui.interfaces.shapes.InterfaceSectionSetPanel
showPanel() - Method in class mgui.interfaces.shapes.InterfaceShapesPanel
showPanel() - Method in class mgui.interfaces.shapes.mesh.InterfaceMeshPanel
showPanel() - Method in class mgui.interfaces.shapes.neuro.InterfaceNeuroMeshPanel
showPanel() - Method in class mgui.interfaces.shapes.neuro.InterfaceNeuroMeshPanel2
showPanel() - Method in class mgui.interfaces.shapes.ShapeStatsPanel
showPanel() - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
showPanel() - Method in class mgui.morph.sections.InterfaceMorphPanel2
showPanel(int) - Method in class mgui.interfaces.InterfaceComboPanel
showPanel(String) - Method in class mgui.interfaces.InterfaceComboPanel
showPanel(DataSourceOptions) - Static method in class mgui.interfaces.datasources.DataSourceDialogBox
showPanel(InterfacePanel) - Method in class mgui.interfaces.InterfaceComboPanel
showPanelClicked() - Method in class mgui.interfaces.InterfaceHideablePanel
showPopupMenu(MouseEvent) - Method in class mgui.datasources.DataQuery
showPopupMenu(MouseEvent) - Method in class mgui.datasources.DataSource
showPopupMenu(MouseEvent) - Method in class mgui.datasources.DataTable
showPopupMenu(MouseEvent) - Method in class mgui.interfaces.graphs.DefaultGraph
showPopupMenu(MouseEvent) - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
showPopupMenu(MouseEvent) - Method in class mgui.interfaces.InterfacePanel
showPopupMenu(MouseEvent) - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel: Popup Menu
showPopupMenu(MouseEvent) - Method in class mgui.interfaces.layouts.CategoryTitle
showPopupMenu(MouseEvent) - Method in interface mgui.interfaces.menus.PopupMenuObject: Shows a popup menu at the point of the given MouseEvent.
showPopupMenu(MouseEvent) - Method in class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree
showPopupMenu(MouseEvent) - Method in class mgui.interfaces.pipelines.trees.PipelineTree
showPopupMenu(MouseEvent) - Method in class mgui.interfaces.projects.InterfaceProject
showPopupMenu(MouseEvent) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
showPopupMenu(MouseEvent) - Method in class mgui.interfaces.shapes.Shape2DInt
showPopupMenu(MouseEvent) - Method in class mgui.interfaces.shapes.Shape3DInt
showPopupMenu(MouseEvent) - Method in class mgui.interfaces.shapes.ShapeModel3D
showPopupMenu(MouseEvent) - Method in class mgui.interfaces.shapes.VertexDataColumn
showPopupMenu(MouseEvent) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
showPopupMenu(MouseEvent) - Method in class mgui.interfaces.tools.dialogs.DialogTool
showPopupMenu(MouseEvent) - Method in class mgui.interfaces.tools.graphics.Tool2D
showPopupMenu(MouseEvent) - Method in class mgui.interfaces.tools.graphics.Tool3D
showPopupMenu(MouseEvent) - Method in class mgui.interfaces.tools.graphs.ToolGraphImage
showPopupMenu(MouseEvent) - Method in class mgui.interfaces.tools.graphs.ToolGraphTransform
showPopupMenu(MouseEvent) - Method in class mgui.interfaces.trees.InterfaceTreeNode
showPopupMenu(MouseEvent) - Method in class mgui.interfaces.trees.InterfaceTreePanel
showSections() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
showStackTraceOnConsole() - Static method in class mgui.interfaces.InterfaceSession
showVertices() - Method in class mgui.interfaces.shapes.InterfaceShape: Queries whether the vertices of this shape are visible.
showVertices() - Method in class mgui.interfaces.shapes.Shape2DInt
showVertices() - Method in class mgui.interfaces.shapes.Shape3DInt
showVertices(boolean) - Method in class mgui.interfaces.shapes.InterfaceShape: Specifies whether the vertices of this shape are visible.
showVertices(boolean) - Method in class mgui.interfaces.shapes.Shape2DInt
showVertices(boolean) - Method in class mgui.interfaces.shapes.Shape3DInt
Shredder2 - Class in mgui.neuro.imaging.camino.tasks: Extracts periodic chunks from binary data.
Shredder2() - Constructor for class mgui.neuro.imaging.camino.tasks.Shredder2
sig_digits - Variable in class mgui.io.standard.xml.XMLOutputOptions
sigma_normal - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
sigma_tangent - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
SigmoidFunction - Class in mgui.models.dynamic.functions: As the name suggests...
SigmoidFunction() - Constructor for class mgui.models.dynamic.functions.SigmoidFunction
SigmoidFunction(double) - Constructor for class mgui.models.dynamic.functions.SigmoidFunction
signal - Variable in class mgui.models.environments.AbstractEnvironmentDataSource
SignalProcessing - Class in mgui.neuro.stats: Utility class for signal processing functions.
SignalProcessing() - Constructor for class mgui.neuro.stats.SignalProcessing
SimpleAxon - Class in mgui.neuro.components.simple
SimpleAxon() - Constructor for class mgui.neuro.components.simple.SimpleAxon
SimpleAxonEvent - Class in mgui.neuro.components.simple
SimpleAxonEvent(SimpleAxon) - Constructor for class mgui.neuro.components.simple.SimpleAxonEvent
SimpleCompartment - Class in mgui.neuro.components.compartments
SimpleCompartment() - Constructor for class mgui.neuro.components.compartments.SimpleCompartment
SimpleCompartment(double, double, double, double, double) - Constructor for class mgui.neuro.components.compartments.SimpleCompartment
SimpleCorticalConnection - Class in mgui.neuro.components.cortical.simple
SimpleCorticalConnection() - Constructor for class mgui.neuro.components.cortical.simple.SimpleCorticalConnection
SimpleCorticalConnectionEvent - Class in mgui.neuro.components.cortical.simple
SimpleCorticalConnectionEvent(SimpleCorticalConnection) - Constructor for class mgui.neuro.components.cortical.simple.SimpleCorticalConnectionEvent
SimpleCorticalInput - Class in mgui.neuro.components.cortical.simple
SimpleCorticalInput() - Constructor for class mgui.neuro.components.cortical.simple.SimpleCorticalInput
SimpleCorticalInputEvent - Class in mgui.neuro.components.cortical.simple
SimpleCorticalInputEvent(SimpleCorticalInput) - Constructor for class mgui.neuro.components.cortical.simple.SimpleCorticalInputEvent
SimpleCorticalOutput - Class in mgui.neuro.components.cortical.simple
SimpleCorticalOutput() - Constructor for class mgui.neuro.components.cortical.simple.SimpleCorticalOutput
SimpleCorticalOutput(double) - Constructor for class mgui.neuro.components.cortical.simple.SimpleCorticalOutput
SimpleCorticalOutput(String, double) - Constructor for class mgui.neuro.components.cortical.simple.SimpleCorticalOutput
SimpleCorticalOutputEvent - Class in mgui.neuro.components.cortical.simple
SimpleCorticalOutputEvent(SimpleCorticalOutput) - Constructor for class mgui.neuro.components.cortical.simple.SimpleCorticalOutputEvent
SimpleCorticalRegion - Class in mgui.neuro.components.cortical.simple
SimpleCorticalRegion() - Constructor for class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
SimpleCorticalRegion(String) - Constructor for class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
SimpleCorticalRegion(String, CorticalFunction) - Constructor for class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
SimpleCorticalRegion(String, CorticalFunction, Function) - Constructor for class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
SimpleCorticalRegion(CorticalFunction) - Constructor for class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
SimpleCorticalRegion(CorticalFunction, Function) - Constructor for class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
SimpleCorticalRegionEvent - Class in mgui.neuro.components.cortical.simple
SimpleCorticalRegionEvent(SimpleCorticalRegion) - Constructor for class mgui.neuro.components.cortical.simple.SimpleCorticalRegionEvent
SimpleDendrite - Class in mgui.neuro.components.simple: Simple dendrite, e.g., for SimpleNeuron.
SimpleDendrite(double) - Constructor for class mgui.neuro.components.simple.SimpleDendrite
SimpleDendriteEvent - Class in mgui.neuro.components.simple
SimpleDendriteEvent(double, double) - Constructor for class mgui.neuro.components.simple.SimpleDendriteEvent
SimpleDendriteEvent(SimpleDendrite) - Constructor for class mgui.neuro.components.simple.SimpleDendriteEvent
SimpleDendrites - Class in mgui.neuro.components.simple: Basic input unit for, e.g., SimpleNeuron.
SimpleDendrites() - Constructor for class mgui.neuro.components.simple.SimpleDendrites
SimpleEnvironment<T extends MguiNumber> - Class in mgui.models.environments: Represents a simple environment, with a set of named observable scalar state variables.
SimpleEnvironment() - Constructor for class mgui.models.environments.SimpleEnvironment
SimpleEnvironment(SimpleEnvironmentUpdater) - Constructor for class mgui.models.environments.SimpleEnvironment: Creates an instance of SimpleEnvironment with the specified updater.
SimpleEnvironmentEvent - Class in mgui.models.environments
SimpleEnvironmentEvent(SimpleEnvironment) - Constructor for class mgui.models.environments.SimpleEnvironmentEvent
SimpleEnvironmentInputDataSource<T extends MguiNumber> - Class in mgui.models.environments: Represents a simple input source for dynamic model environment.
SimpleEnvironmentInputDataSource() - Constructor for class mgui.models.environments.SimpleEnvironmentInputDataSource
SimpleEnvironmentObservableDataSource<T extends MguiNumber> - Class in mgui.models.environments: Simple data source which updates in response to changes in an environment's state variables.
SimpleEnvironmentObservableDataSource() - Constructor for class mgui.models.environments.SimpleEnvironmentObservableDataSource
SimpleEnvironmentUpdater - Class in mgui.models.updaters: Default super class for environment updaters.
SimpleEnvironmentUpdater() - Constructor for class mgui.models.updaters.SimpleEnvironmentUpdater
SimpleEvent - Class in mgui.models.events
SimpleEvent - Class in mgui.neuro.components.simple
SimpleEvent() - Constructor for class mgui.models.events.SimpleEvent
SimpleEvent() - Constructor for class mgui.neuro.components.simple.SimpleEvent
SimpleMotorNeuron - Class in mgui.neuro.components.simple: Simple implementation of a motor (output) neuron.
SimpleMotorNeuron() - Constructor for class mgui.neuro.components.simple.SimpleMotorNeuron
SimpleMotorNeuron(int, double) - Constructor for class mgui.neuro.components.simple.SimpleMotorNeuron
SimpleMotorNeuronEvent - Class in mgui.neuro.components.simple
SimpleMotorNeuronEvent(int, double) - Constructor for class mgui.neuro.components.simple.SimpleMotorNeuronEvent
SimpleMotorNeuronEvent(SimpleMotorNeuron) - Constructor for class mgui.neuro.components.simple.SimpleMotorNeuronEvent
SimpleNeuron - Class in mgui.neuro.components.simple: Simple McCulloch-Pitts model of an artificial neuron.
SimpleNeuron() - Constructor for class mgui.neuro.components.simple.SimpleNeuron
SimpleSensoryNeuron - Class in mgui.neuro.components.simple: A simple input (i.e., sensory) neuron.
SimpleSensoryNeuron() - Constructor for class mgui.neuro.components.simple.SimpleSensoryNeuron
SimpleSensoryNeuron(int, double) - Constructor for class mgui.neuro.components.simple.SimpleSensoryNeuron
SimpleSoma - Class in mgui.neuro.components.simple: Simple soma for, e.g., SimpleNeuron.
SimpleSoma(double, double, double) - Constructor for class mgui.neuro.components.simple.SimpleSoma
SimpleSomaEvent - Class in mgui.neuro.components.simple
SimpleSomaEvent(double, double) - Constructor for class mgui.neuro.components.simple.SimpleSomaEvent
SimpleSomaEvent(SimpleSoma) - Constructor for class mgui.neuro.components.simple.SimpleSomaEvent
SimpleStatistics - Class in mgui.neuro.stats
SimpleStatistics() - Constructor for class mgui.neuro.stats.SimpleStatistics
SimpleSynapse - Class in mgui.neuro.components.simple: Simple synapse for, e.g., SimpleNeuron
SimpleSynapse(double, double) - Constructor for class mgui.neuro.components.simple.SimpleSynapse
SimpleSynapseEvent - Class in mgui.neuro.components.simple
SimpleSynapseEvent(SimpleSynapse) - Constructor for class mgui.neuro.components.simple.SimpleSynapseEvent
SINGLE - Static variable in class mgui.datasources.DataTypes
SingleNode - mgui.interfaces.shapes.queries.InterfaceShapeQuery.QueryMode
SingleObject - mgui.interfaces.shapes.queries.InterfaceShapeQuery.QueryMode
Site3d - Class in au.edu.unsw.cse: A point in 3d space that can be rendered
Site3d(Point3d) - Constructor for class au.edu.unsw.cse.Site3d
Site3d(Point3d, int) - Constructor for class au.edu.unsw.cse.Site3d
size - Variable in class mgui.geometry.util.K3DBinaryTree
size - Variable in class mgui.interfaces.io.DataSourceEvent
size - Variable in class mgui.interfaces.layouts.LayoutItem
size() - Method in class au.edu.unsw.cse.Object3dList
size_x - Variable in class mgui.interfaces.plots.sgt.SgtPlotLayoutOptions: Width of graph in physical units
size_y - Variable in class mgui.interfaces.plots.sgt.SgtPlotLayoutOptions: Height of graph in physical units
sizeof_hdr - Variable in class mgui.io.standard.nifti.Nifti1Dataset
skip - Variable in class mgui.io.domestic.shapes.PolygonSet3DInputOptions
skip - Variable in class mgui.io.domestic.shapes.PolygonSet3DLoader
skip(int) - Method in class mgui.io.util.BufferedRandomAccessFile
skip(int) - Static method in class mgui.neuro.imaging.camino.tasks.Shredder2: Skip bytes from the input stream.
skip_header - Variable in class mgui.io.domestic.shapes.ShapeDataInputOptions
skip_lines - Variable in class mgui.io.domestic.shapes.PolygonSet3DInputOptions
skip_lines - Variable in class mgui.io.domestic.shapes.PolygonSet3DLoader
skip_min_nodes - Variable in class mgui.io.domestic.shapes.PolygonSet3DInputOptions
skip_min_nodes - Variable in class mgui.io.domestic.shapes.PolygonSet3DLoader
slice_code - Variable in class mgui.io.standard.nifti.Nifti1Dataset
slice_dim - Variable in class mgui.io.standard.nifti.Nifti1Dataset
slice_duration - Variable in class mgui.io.standard.nifti.Nifti1Dataset
slice_end - Variable in class mgui.io.standard.nifti.Nifti1Dataset
slice_start - Variable in class mgui.io.standard.nifti.Nifti1Dataset
SliderTableColumn(int, int, int) - Constructor for class mgui.interfaces.shapes.volume.InterfaceVolumePanel.SliderTableColumn
slisteners - Variable in class mgui.interfaces.shapes.ShapeModel3D
slope - Variable in class mgui.io.domestic.shapes.VolumeOutputOptions
smoothCurveMovingAverage(ArrayList<Double>, int) - Static method in class mgui.neuro.stats.SignalProcessing: Smooths curve using a moving-average algorithm, with a window width n = 2m + 1; where n is an odd number.
smoothEM(Mesh3DInt) - Static method in class mgui.geometry.mesh.MeshFunctions
SmoothEM(Mesh3DInt) - Method in class mgui.geometry.mesh.MeshEngine
smoothingExp - Variable in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
smoothLR(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
SmoothLR(Mesh3D) - Method in class mgui.geometry.mesh.MeshEngine
smoothVertexValuesIsotropicGaussian(Mesh3D, ArrayList<MguiNumber>, double, double, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions: Smooths values with an isotropic Gaussian kernel, along the surface of mesh.
smoothVertexValuesIsotropicGaussian(Mesh3DInt, ProgressUpdater) - Method in class mgui.geometry.mesh.MeshEngine: Uses the current parameters for "Smooth vertex values - Isotropic Gaussian" to smooth vertex values with a Gaussian kernel, isotropic in the plane of the surface mesh.
smoothVolume(Volume3DInt, String, ProgressUpdater) - Method in class mgui.geometry.volume.VolumeEngine: Geometrically smooths values from source_column in volume with the smoothing kernel specified by method.
smoothVolumeGaussian(Volume3DInt, String, String, double, double) - Static method in class mgui.geometry.volume.VolumeFunctions: Geometrically smooths values from source_column in volume with an isotropic Gaussian smoothing kernel with a full-width-at-half-maximum of fwhm.
smoothVolumeGaussian(Volume3DInt, String, String, double, double, ProgressUpdater, double) - Static method in class mgui.geometry.volume.VolumeFunctions: Geometrically smooths values from source_column in volume with an isotropic Gaussian smoothing kernel with a full-width-at-half-maximum of fwhm.
smoothVolumeGaussianBlocking(Volume3DInt, String, String, double, double, ProgressUpdater, double) - Static method in class mgui.geometry.volume.VolumeFunctions: Geometrically smooths values from source_column in volume with an isotropic Gaussian smoothing kernel with a full-width-at-half-maximum of fwhm.
solid_colour - Variable in class mgui.image.util.WindowedColourModel
solver - Variable in class mgui.neuro.components.AbstractNeuroComponent
solver - Variable in class mgui.neuro.components.compartments.AbstractCompartment
soma - Variable in class mgui.neuro.components.AbstractDendrite
soma - Variable in class mgui.neuro.components.AbstractNeuron
soma - Variable in class mgui.neuro.components.compartments.CompartmentalDendrite
Soma - Interface in mgui.neuro.components
sort() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
sort() - Method in class mgui.morph.sections.MappedPolygon2DPath
sort() - Method in class mgui.neuro.networks.CorticalNetwork
sort(View3d) - Method in class au.edu.unsw.cse.Object3dList
SORT_ASC - Static variable in class mgui.morph.sections.MapWeightComparator
SORT_DSC - Static variable in class mgui.morph.sections.MapWeightComparator
sort_fields - Variable in class mgui.datasources.DataTable
sortBy - Variable in class mgui.morph.sections.MapWeightComparator
sortByFirstFrame() - Method in class au.edu.unsw.cse.Object3dList: sort by firstFrame
sortByLastFrame() - Method in class au.edu.unsw.cse.Object3dList: sort by lasstFrame
sortBySelectFrame() - Method in class au.edu.unsw.cse.Object3dList: sort by selectFrame
sorted_faces - Variable in class mgui.geometry.mesh.SortedMesh
sorted_nodes - Variable in class mgui.geometry.mesh.SortedMesh
sorted_objects - Variable in class mgui.interfaces.queries.InterfaceQuery
sorted_properties - Variable in class mgui.interfaces.queries.QueryResult
sorted_x - Variable in class mgui.geometry.util.SortedShape3D
sorted_y - Variable in class mgui.geometry.util.SortedShape3D
sorted_z - Variable in class mgui.geometry.util.SortedShape3D
SortedMesh - Class in mgui.geometry.mesh: Sorts a mesh by x, y, z and stores a list of sorted indices
SortedMesh(Mesh3D) - Constructor for class mgui.geometry.mesh.SortedMesh
SortedShape3D - Class in mgui.geometry.util: Convenience class for sorting a shape's vertices in order of their x, y, and z coordinates, respectively.
SortedShape3D(Shape3DInt) - Constructor for class mgui.geometry.util.SortedShape3D
SortedShape3D.Vertex - Class in mgui.geometry.util
SortedShape3D.VertexComparatorX - Class in mgui.geometry.util
SortedShape3D.VertexComparatorY - Class in mgui.geometry.util
SortedShape3D.VertexComparatorZ - Class in mgui.geometry.util
sorter - Variable in class mgui.interfaces.tables.InterfaceDataTable
sortFields - Variable in class mgui.datasources.DataTable
sortTasks() - Method in class mgui.interfaces.graphics.video.Video
sortValue - Variable in class mgui.morph.sections.AttributeNode2D
sortValue - Variable in class mgui.morph.sections.NodeMap2D
source - Variable in class mgui.interfaces.datasources.DataSourceOptions
source - Variable in class mgui.interfaces.datasources.DataTableOptions
source - Variable in class mgui.interfaces.maps.Camera3D.CameraLightSource
source - Variable in class mgui.morph.sections.RadialRep2D
source - Variable in class mgui.morph.sections.RadialRepresentation
source_name - Variable in class mgui.interfaces.tables.InterfaceDataTable
source_set - Variable in class mgui.interfaces.tools.shapes.ToolCreateMeshFromPolylinesOptions
source_tree - Variable in class mgui.interfaces.plots.InterfacePlotDialog
sourceAttr - Variable in class mgui.interfaces.attributes.tree.AttributeButton
sourceListeners - Variable in class mgui.interfaces.plots.MatrixPlotDataSource
sourceListeners - Variable in class mgui.interfaces.plots.PlotXYDataSource
sourceListeners - Variable in class mgui.io.domestic.shapes.VolumeFileDataSource
sourceListeners - Variable in class mgui.models.environments.AbstractEnvironmentDataSource
Sparse - mgui.io.foreign.freesurfer.FreesurferVertexDataInOptions.Format
SpatialUnit - Class in mgui.geometry.util: Specifies a spatial unit, with respect to the default Java3D unit (meter).
SpatialUnit(String, String, double) - Constructor for class mgui.geometry.util.SpatialUnit
Sphere3D - Class in mgui.geometry: Represents a sphere in R3.
Sphere3D() - Constructor for class mgui.geometry.Sphere3D
Sphere3D(BoundingSphere) - Constructor for class mgui.geometry.Sphere3D
Sphere3D(Point3f, float) - Constructor for class mgui.geometry.Sphere3D
spinOff() - Method in class au.edu.unsw.cse.Viewer
spinOn(double, double) - Method in class au.edu.unsw.cse.Viewer
split() - Constructor for class mgui.interfaces.unix.UnixFunctions.split
split_orientation - Variable in class mgui.interfaces.InterfaceSplitPanel
splitPane - Variable in class mgui.interfaces.frames.SessionFrame
splitPanelChanged(SplitPanelEvent) - Method in class mgui.interfaces.InterfaceDisplayPanel
splitPanelChanged(SplitPanelEvent) - Method in interface mgui.interfaces.SplitPanelListener: The split pane has changed.
SplitPanelChanged - mgui.interfaces.DisplayPanelEvent.EventType
SplitPanelEvent - Class in mgui.interfaces: An event occurring on an InterfaceSplitPanel
SplitPanelEvent(InterfaceSplitPanel, SplitPanelEvent.EventType) - Constructor for class mgui.interfaces.SplitPanelEvent
SplitPanelEvent.EventType - Enum in mgui.interfaces
SplitPanelListener - Interface in mgui.interfaces: Listens for changes on a split pane.
splitRoiWithPlane(Mesh3D, Plane3D, ArrayList<MguiNumber>, int, int, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions: Splits the ROI defined by roi into two parts, on either side of plane.
splitRoiWithPlane(Mesh3DInt, InterfaceProgressBar) - Method in class mgui.geometry.mesh.MeshEngine: Splits the ROI defined by roi_value into two parts, on either side of the plane defined by the section set and section number.
splitWindow(InterfaceGraphicWindow, InterfaceGraphicWindow, int, boolean) - Method in class mgui.interfaces.InterfaceDisplayPanel: Adds a new split panel to this display panel, in place of window_to_split, which must already be a child of this display panel.
SQLObject - Interface in mgui.datasources: Specifies an object which produces SQL statements.
sqlStr - Variable in class mgui.datasources.DataType
sqlVal - Variable in class mgui.datasources.DataType
srow_x - Variable in class mgui.io.standard.nifti.Nifti1Dataset
srow_y - Variable in class mgui.io.standard.nifti.Nifti1Dataset
srow_z - Variable in class mgui.io.standard.nifti.Nifti1Dataset
ssl - Variable in class mgui.datasources.DataSourceDriver
st - Variable in class au.edu.unsw.cse.NumberStream
StackLayout - Class in au.edu.unsw.cse
StackLayout(int) - Constructor for class au.edu.unsw.cse.StackLayout
start - Variable in class au.edu.unsw.cse.AnimationWidget
start - Variable in class mgui.geometry.Vector2D
start - Variable in class mgui.geometry.Vector3D
start - Variable in class mgui.pipelines.PipelineTask
start() - Method in class au.edu.unsw.cse.AnimationWidget
start() - Method in class au.edu.unsw.cse.AnimationWidgetVRML
start() - Method in class au.edu.unsw.cse.Applet3d
start() - Method in class au.edu.unsw.cse.Timer
start() - Method in class au.edu.unsw.cse.Viewer
start() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
start() - Method in class mgui.interfaces.graphics.video.Video: Initiates the running of this video.
start() - Static method in class mgui.interfaces.InterfaceSession: Main entry point into ModelGUI application.
start() - Method in class mgui.pipelines.PipelineState.ErrorStreamListener
start(boolean) - Static method in class mgui.interfaces.InterfaceSession: Main entry point into ModelGUI application.
start(String) - Static method in class mgui.interfaces.InterfaceSession: Main entry point into modelGUI application.
start(String, boolean) - Static method in class mgui.interfaces.InterfaceSession: Main entry point into modelGUI application.
start_at - Variable in class mgui.io.domestic.datasources.ImportDataTableTextOptions
start_log(String) - Method in class mgui.command.CommandInstance
start_no_gui() - Static method in class mgui.interfaces.InterfaceSession: Main entry point into modelGUI application, without a frame being created.
start_no_gui(String) - Static method in class mgui.interfaces.InterfaceSession: Main entry point into modelGUI application.
start_time - Variable in class mgui.interfaces.graphics.video.VideoTask
start_time - Variable in class mgui.io.domestic.videos.ImageStackVideoOptions
start_value - Variable in class mgui.interfaces.attributes.video.AttributeObjectVideoTask
startAnimation() - Method in class au.edu.unsw.cse.Mousedelta
started - Variable in class mgui.interfaces.graphics.video.VideoTask
startElement(String, String, String, Attributes) - Method in class mgui.interfaces.graphics.video.xml.VideoXMLHandler
startElement(String, String, String, Attributes) - Method in class mgui.io.domestic.attributes.AttributeXMLHandler
startElement(String, String, String, Attributes) - Method in class mgui.io.domestic.datasources.DataSourceXMLHandler
startElement(String, String, String, Attributes) - Method in class mgui.io.domestic.maps.ColourMapXMLHandler
startElement(String, String, String, Attributes) - Method in class mgui.io.domestic.maps.NameMapXMLHandler
startElement(String, String, String, Attributes) - Method in class mgui.io.domestic.network.CorticalNetworkXMLHandler
startElement(String, String, String, Attributes) - Method in class mgui.io.domestic.pipelines.PipelineProcessLibraryXMLHandler
startElement(String, String, String, Attributes) - Method in class mgui.io.domestic.pipelines.PipelineXMLHandler
startElement(String, String, String, Attributes) - Method in class mgui.io.domestic.pipelines.TaskXMLHandler
startElement(String, String, String, Attributes) - Method in class mgui.io.domestic.shapes.xml.InterfaceShapeXMLHandler
startElement(String, String, String, Attributes) - Method in class mgui.io.domestic.shapes.xml.SectionSet3DXMLHandler
startElement(String, String, String, Attributes) - Method in class mgui.io.domestic.shapes.xml.ShapeModel3DXMLHandler
startElement(String, String, String, Attributes) - Method in class mgui.io.domestic.shapes.xml.ShapeSet2DXMLHandler
startElement(String, String, String, Attributes) - Method in class mgui.io.domestic.shapes.xml.ShapeSet3DXMLHandler
startElement(String, String, String, Attributes) - Method in class mgui.io.domestic.views.View3DLoader.View3DXMLHandler
startElement(String, String, String, Attributes) - Method in class mgui.io.foreign.camino.xml.CaminoProjectXMLHandler
startElement(String, String, String, Attributes) - Method in class mgui.io.standard.gifti.xml.GiftiXMLHandler
startInstanceTimer() - Method in class mgui.command.CommandInterpreter
startPoly - Variable in class mgui.morph.sections.MappedPolygon2DPath
startPt - Variable in class mgui.interfaces.tools.graphics.ToolWindowZoom2D
startPt - Variable in class mgui.interfaces.tools.shapes.ToolCreateEllipse2D
startPt - Variable in class mgui.interfaces.tools.shapes.ToolCreateImage2D
startPt - Variable in class mgui.interfaces.tools.shapes.ToolCreateImage3D
startPt - Variable in class mgui.interfaces.tools.shapes.ToolCreatePolygon2D
startPt - Variable in class mgui.interfaces.tools.shapes.ToolCreateRect2D
startSection - Variable in class mgui.io.standard.xml.svg.SVGInputOptions
startTimer() - Static method in class mgui.command.CommandInterpreter
StartUpFrame - Class in mgui.interfaces.startup: A frame that is shown at startup and which allows the user to select from the current list of workspaces (all "*.workspace" files located in the "workspaces" directory).
StartUpFrame() - Constructor for class mgui.interfaces.startup.StartUpFrame
state - Variable in class mgui.models.dynamic.functions.ODEFunction
state - Variable in class mgui.neuro.components.compartments.AbstractCompartment
state - Variable in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
state - Variable in class mgui.pipelines.InterfacePipeline
stateChanged(ChangeEvent) - Method in class mgui.interfaces.gui.RowNumberTable
stateChanged(ChangeEvent) - Method in class mgui.interfaces.shapes.InterfaceShapesPanel
stateChanged(ChangeEvent) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel.SliderTableColumn
stateChanged(ChangeEvent) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
StatFunctions - Class in mgui.stats: Utility class providing general statistical functions.
StatFunctions() - Constructor for class mgui.stats.StatFunctions
StaticLocationTransformer<V extends AbstractGraphNode> - Class in mgui.interfaces.graphs.util: Simple transformer returns the static location of a graph vertex.
StaticLocationTransformer() - Constructor for class mgui.interfaces.graphs.util.StaticLocationTransformer
StaticLocationTransformer(BoundingSphere) - Constructor for class mgui.interfaces.graphs.util.StaticLocationTransformer
StaticPipelineEvent - Class in mgui.pipelines: Represents an static event on a pipeline; i.e., a change to its structure, etc.
StaticPipelineEvent(PipelineTask, int, StaticPipelineEvent.EventType) - Constructor for class mgui.pipelines.StaticPipelineEvent
StaticPipelineEvent(PipelineTask, StaticPipelineEvent.EventType) - Constructor for class mgui.pipelines.StaticPipelineEvent
StaticPipelineEvent(PipelineTask, StaticPipelineEvent.EventType, Object) - Constructor for class mgui.pipelines.StaticPipelineEvent
StaticPipelineEvent.EventType - Enum in mgui.pipelines
StaticPipelineListener - Interface in mgui.pipelines: Specifies a listener on an InterfacePipeline
status_listeners - Variable in class mgui.interfaces.graphics.InterfaceGraphic
status_map - Variable in class mgui.interfaces.graphics.InterfaceGraphic
statusBar - Variable in class mgui.interfaces.InterfacePanel
step - Variable in class mgui.interfaces.attributes.video.AttributeObjectVideoTask
stimulate(DynamicModelEnvironmentEvent) - Method in interface mgui.models.dynamic.DynamicModelEnvironmentSensor: Notifies this sensor that the environment has changed.
stimulate(DynamicModelEnvironmentEvent) - Method in class mgui.models.environments.SimpleEnvironmentInputDataSource
stimulate(DynamicModelEnvironmentEvent) - Method in class mgui.models.environments.SimpleEnvironmentObservableDataSource
stimulate(DynamicModelEnvironmentEvent) - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalInput
stimulate(DynamicModelEnvironmentEvent) - Method in class mgui.neuro.components.simple.SimpleSensoryNeuron
StlOutputOptions - Class in mgui.io.domestic.printing: Options defining an output operation to STL format.
StlOutputOptions() - Constructor for class mgui.io.domestic.printing.StlOutputOptions
StlOutputOptions.Format - Enum in mgui.io.domestic.printing
StlWriter - Class in mgui.io.domestic.printing: Writes a Mesh3D object to STL format, suitable for 3D printing.
StlWriter() - Constructor for class mgui.io.domestic.printing.StlWriter
stop - Variable in class au.edu.unsw.cse.AnimationWidget
stop() - Method in class au.edu.unsw.cse.AnimationWidget
stop() - Method in class au.edu.unsw.cse.AnimationWidgetVRML
stop() - Method in class au.edu.unsw.cse.Applet3d
stop() - Method in class au.edu.unsw.cse.Timer
stop() - Method in class au.edu.unsw.cse.Viewer
stop() - Method in class mgui.interfaces.graphics.video.Video: Stops the video and alerts all video listeners of this.
stop_log() - Method in class mgui.command.CommandInstance
stop_skull_int - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
stop_time - Variable in class mgui.interfaces.graphics.video.VideoTask
stop_time - Variable in class mgui.io.domestic.videos.ImageStackVideoOptions
stopAnimation() - Method in class au.edu.unsw.cse.Mousedelta
stopCellEditing() - Method in class mgui.interfaces.trees.AbstractTreeCellEditor
stopExecution() - Static method in class mgui.neuro.imaging.camino.CaminoFunctions
stopExecution() - Method in class mgui.pipelines.PipelineState
stopInstanceTimer() - Method in class mgui.command.CommandInterpreter
StreamListener - Interface in mgui.command: Listener for an I/O stream
streamUpdated(EventObject) - Method in interface mgui.command.StreamListener
STRING - Static variable in class mgui.datasources.DataTypes
string_format - Variable in class mgui.io.domestic.variables.MatrixOutOptions
StringAttr - Class in mgui.io.foreign.vol
StringFunctions - Class in mgui.util
StringFunctions() - Constructor for class mgui.util.StringFunctions
StringVectorInOptions - Class in mgui.io.domestic.variables: Options for reading an array of String objects into a StringVectorInt instance.
StringVectorInOptions() - Constructor for class mgui.io.domestic.variables.StringVectorInOptions
StringVectorInt - Class in mgui.interfaces.variables: Stores an array of String objects as a variable.
StringVectorInt(String, int) - Constructor for class mgui.interfaces.variables.StringVectorInt
StringVectorInt(String, List<String>) - Constructor for class mgui.interfaces.variables.StringVectorInt
StringVectorInt(List<String>) - Constructor for class mgui.interfaces.variables.StringVectorInt
StringVectorLoader - Class in mgui.io.domestic.variables: Loader class to input an array of String objects into an StringVectorInt instance.
StringVectorLoader() - Constructor for class mgui.io.domestic.variables.StringVectorLoader
StringVectorLoader(File) - Constructor for class mgui.io.domestic.variables.StringVectorLoader
strip_size - Variable in class mgui.io.foreign.duff.DuffSurfaceHeader
strokes - Variable in class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog.YTableModel
strokes - Variable in class mgui.interfaces.plots.sgt.SgtScatterPlotDialog.XYTableModel
StrokeSample - Class in mgui.interfaces.shapes.util: A panel that displays a stroke sample.
StrokeSample(Stroke) - Constructor for class mgui.interfaces.shapes.util.StrokeSample: Creates a StrokeSample for the specified stroke.
subdirs - Variable in class mgui.interfaces.projects.InterfaceProjectOptions
subdirs - Variable in class mgui.neuro.imaging.camino.CaminoProject
subdivideButterflyScheme(Mesh3D, double, boolean[]) - Static method in class mgui.geometry.mesh.MeshSubdivision: Subdivide mesh once, using the "Butterfly Scheme" discussed by Dyn et al (1990), which will interpolate between existing nodes without altering these nodes.
subdivideButterflyScheme(Mesh3DInt, double) - Static method in class mgui.geometry.mesh.MeshSubdivision
SubdivideButterflyScheme(Mesh3DInt) - Method in class mgui.geometry.mesh.MeshEngine: Calls the function SubdivideButterflyScheme in the MeshSubdivision function class, using parameters specified in the AttributeList "Butterfly Scheme".
subdivideMesh(Mesh3D, int) - Static method in class mgui.geometry.mesh.MeshFunctions
subdivideMesh(Mesh3DInt, int) - Static method in class mgui.geometry.mesh.MeshFunctions: Subdivides iter times, for all triangle in mesh.
subdivideMesh(Mesh3DInt, int, double, double) - Static method in class mgui.geometry.mesh.MeshFunctions: Subdivides iter times, for triangles which meet the criteria specified by and .
subdivideRois(Mesh3D, ArrayList<MguiNumber>, int, int, int, int, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions: Subdivides a mesh into (roughly) equally sized ROIs, with the final number equal or close to target_rois.
subdivideRois(Mesh3D, ArrayList<MguiNumber>, int, int, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions: Subdivides a mesh into (roughly) equally sized ROIs, with the final number equal or close to target_rois.
subdivideRois(Mesh3DInt, InterfaceProgressBar) - Method in class mgui.geometry.mesh.MeshEngine: Subdivide the set of ROIs in mesh_int, by iteratively splitting the largest ROI in half along its narrowest section.
subdivideRoisBlocking(Mesh3D, ArrayList<MguiNumber>, int, int, int, int, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions: Subdivides a mesh into (roughly) equally sized ROIs, with the final number equal or close to target_rois.
subfolders - Variable in class mgui.interfaces.neuro.imaging.camino.CaminoProjectOptions
subject_deviation_threshold - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
subject_dir - Variable in class mgui.interfaces.neuro.CorticalThicknessOptions
subject_prefix - Variable in class mgui.interfaces.neuro.CorticalThicknessOptions
subject_prefix - Variable in class mgui.neuro.imaging.camino.CaminoProject
subjects - Variable in class mgui.interfaces.neuro.imaging.camino.CaminoProjectOptions
subjects - Variable in class mgui.neuro.imaging.camino.CaminoProject
subsets - Variable in class mgui.interfaces.shapes.selection.ShapeSelectionSet
subtitle_height - Variable in class mgui.interfaces.plots.sgt.SgtPlotLayoutOptions: Height of 2nd and 3rd main titles
subtract(double) - Method in class mgui.numbers.MguiBoolean
subtract(double) - Method in class mgui.numbers.MguiDouble
subtract(double) - Method in class mgui.numbers.MguiFloat
subtract(double) - Method in class mgui.numbers.MguiInteger
subtract(double) - Method in class mgui.numbers.MguiLong
subtract(double) - Method in interface mgui.numbers.MguiNumber: Update the value of this number by subtracting n.
subtract(double) - Method in class mgui.numbers.MguiShort
subtract(Point3d) - Method in class au.edu.unsw.cse.Point3d
subtract(MguiNumber) - Method in class mgui.numbers.MguiBoolean
subtract(MguiNumber) - Method in class mgui.numbers.MguiDouble
subtract(MguiNumber) - Method in class mgui.numbers.MguiFloat
subtract(MguiNumber) - Method in class mgui.numbers.MguiInteger
subtract(MguiNumber) - Method in class mgui.numbers.MguiLong
subtract(MguiNumber) - Method in interface mgui.numbers.MguiNumber: Update the value of this number by subtracting n.
subtract(MguiNumber) - Method in class mgui.numbers.MguiShort
Subtract - mgui.geometry.volume.VolumeFunctions.Operation
subVal - Variable in class mgui.interfaces.shapes.mesh.MeshDataThresholdOptions
success - Variable in class mgui.pipelines.PipelineJob
Success - mgui.pipelines.PipelineTask.Status
success_message - Variable in class mgui.io.FileWriter
success_status - Variable in class mgui.command.CommandInterpreter
superVal - Variable in class mgui.interfaces.shapes.mesh.MeshDataThresholdOptions
supportsVariableType(Class<?>) - Method in interface mgui.interfaces.math.VariableObject: Specifies whether this variable object supports the given class type when setting variables.
supportsVariableType(Class<?>) - Method in class mgui.interfaces.shapes.InterfaceShape
SurfaceDataFileLoader - Class in mgui.io.domestic.shapes: Loads vertex-wise data into an InterfaceShape object.
SurfaceDataFileLoader() - Constructor for class mgui.io.domestic.shapes.SurfaceDataFileLoader
SurfaceDataFileWriter - Class in mgui.io.domestic.shapes
SurfaceDataFileWriter() - Constructor for class mgui.io.domestic.shapes.SurfaceDataFileWriter
SurfaceDataInputDialogBox - Class in mgui.io.domestic.shapes: Dialog box for loading vertex-wise data into a surface.
SurfaceDataInputDialogBox() - Constructor for class mgui.io.domestic.shapes.SurfaceDataInputDialogBox
SurfaceDataInputDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.domestic.shapes.SurfaceDataInputDialogBox
SurfaceDataInputDialogBox.TableModel - Class in mgui.io.domestic.shapes
SurfaceDataInputOptions - Class in mgui.io.domestic.shapes
SurfaceDataInputOptions() - Constructor for class mgui.io.domestic.shapes.SurfaceDataInputOptions
SurfaceDataInputOptions.DataType - Enum in mgui.io.domestic.shapes
SurfaceDataOutputDialogBox - Class in mgui.io.domestic.shapes
SurfaceDataOutputDialogBox() - Constructor for class mgui.io.domestic.shapes.SurfaceDataOutputDialogBox
SurfaceDataOutputDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.domestic.shapes.SurfaceDataOutputDialogBox
SurfaceDataOutputDialogBox.TableModel - Class in mgui.io.domestic.shapes
SurfaceDataOutputOptions - Class in mgui.io.domestic.shapes: Options for outputting surface data to a text file (single column)
SurfaceDataOutputOptions() - Constructor for class mgui.io.domestic.shapes.SurfaceDataOutputOptions
SurfaceFileLoader - Class in mgui.io.domestic.shapes: Abstract loader class for all loaders which load Mesh3DInt objects.
SurfaceFileLoader() - Constructor for class mgui.io.domestic.shapes.SurfaceFileLoader
SurfaceFileWriter - Class in mgui.io.domestic.shapes: Represents an abstract surface file writer object.
SurfaceFileWriter() - Constructor for class mgui.io.domestic.shapes.SurfaceFileWriter
SurfaceInputDialogBox - Class in mgui.io.domestic.shapes: Dialog box for specifying options to load a Mesh3D from file.
SurfaceInputDialogBox() - Constructor for class mgui.io.domestic.shapes.SurfaceInputDialogBox
SurfaceInputDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.domestic.shapes.SurfaceInputDialogBox
SurfaceInputDialogBox.TableModel - Class in mgui.io.domestic.shapes
SurfaceInputOptions - Class in mgui.io.domestic.shapes: Options for inputting a Mesh3DInt object.
SurfaceInputOptions() - Constructor for class mgui.io.domestic.shapes.SurfaceInputOptions
SurfaceOutputDialogBox - Class in mgui.io.domestic.shapes
SurfaceOutputDialogBox() - Constructor for class mgui.io.domestic.shapes.SurfaceOutputDialogBox
SurfaceOutputDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.domestic.shapes.SurfaceOutputDialogBox
SurfaceOutputOptions - Class in mgui.io.domestic.shapes: Standard options for writing a surface to file.
SurfaceOutputOptions() - Constructor for class mgui.io.domestic.shapes.SurfaceOutputOptions
svg_style - Variable in class mgui.io.standard.xml.svg.SVGParser
SVGFileFilter - Class in mgui.io.standard.xml.svg
SVGFileFilter() - Constructor for class mgui.io.standard.xml.svg.SVGFileFilter
SVGFileInterface - Class in mgui.io.standard.xml.svg
SVGFileInterface() - Constructor for class mgui.io.standard.xml.svg.SVGFileInterface
SVGInputOptions - Class in mgui.io.standard.xml.svg
SVGInputOptions() - Constructor for class mgui.io.standard.xml.svg.SVGInputOptions
SVGInputOptions.SVGMap - Enum in mgui.io.standard.xml.svg
SVGObject - Class in mgui.io.standard.xml.svg
SVGObject() - Constructor for class mgui.io.standard.xml.svg.SVGObject
SVGOptions - Variable in class mgui.io.standard.xml.svg.SVGFileInterface
SVGOptions - Variable in class mgui.io.standard.xml.svg.SVGOptionsDialog
SVGOptionsDialog - Class in mgui.io.standard.xml.svg
SVGOptionsDialog() - Constructor for class mgui.io.standard.xml.svg.SVGOptionsDialog
SVGOptionsDialog(Frame, InterfaceFilePanel) - Constructor for class mgui.io.standard.xml.svg.SVGOptionsDialog
SVGParser - Class in mgui.io.standard.xml.svg
SVGParser() - Constructor for class mgui.io.standard.xml.svg.SVGParser
SVGParser.Mode - Enum in mgui.io.standard.xml.svg
SVGPath - Class in mgui.io.standard.xml.svg
SVGPath() - Constructor for class mgui.io.standard.xml.svg.SVGPath
SVGStyle - Class in mgui.io.standard.xml.svg
SVGStyle() - Constructor for class mgui.io.standard.xml.svg.SVGStyle
swap() - Method in class mgui.interfaces.InterfaceSplitPanel: Swaps the two components of this split panel
swap_xy - Variable in class mgui.io.foreign.trackvis.TrackVisTractHeader
swap_yz - Variable in class mgui.io.foreign.trackvis.TrackVisTractHeader
swap_zx - Variable in class mgui.io.foreign.trackvis.TrackVisTractHeader
switchOrder(byte[], int) - Static method in class mgui.io.util.IoFunctions
Synapse - Interface in mgui.neuro.components
synapses - Variable in class mgui.neuro.components.AbstractAxon
synapses - Variable in class mgui.neuro.components.AbstractDendrite
synapses - Variable in class mgui.neuro.components.compartments.CompartmentalDendrite

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