Package mgui.io.foreign.wunil

Class WunilVolumeLoader

java.lang.Object

mgui.io.FileLoader

mgui.io.domestic.shapes.InterfaceShapeLoader

mgui.io.domestic.shapes.VolumeFileLoader

mgui.io.foreign.wunil.WunilVolumeLoader

All Implemented Interfaces:

InterfaceIO, IconObject

public class WunilVolumeLoader
extends VolumeFileLoader

Loader to load WUNIL IDF format volumes (University of Washington in St. Louis format used by Caret).

This format consists of an ASCII header file and a separate raw binary image file

Since:

1.0

Version:

1.0

Author:

Andrew Reid

Field Summary

Fields

Modifier and Type	Field	Description
protected WunilDataset	dataset

Fields inherited from class mgui.io.domestic.shapes.VolumeFileLoader

dataMax, dataMin, flipX, flipY, flipZ, maxAlpha, minAlpha, setAlpha

Fields inherited from class mgui.io.FileLoader

dataFile, dataURL, options

Constructor Summary

Constructors

Constructor	Description
WunilVolumeLoader()
WunilVolumeLoader(java.io.File file)

Method Summary

Modifier and Type	Method	Description
WunilDataset	getDataset()
VolumeMetadata	getVolumeMetadata()	Returns a set of metadata describing the current volume file.
protected boolean	hasDataset()
protected boolean	loadDataset()
boolean	setVolume3DBlocking(Volume3DInt volume, java.lang.String column, int v, VolumeInputOptions options, ProgressUpdater progress)

Methods inherited from class mgui.io.domestic.shapes.VolumeFileLoader

getDefaultOptions, getObjectIcon, getSupportedObjects, getVolCount, getVolume3D, getVolume3D, getVolume3D, getVolume3D, getVolume3D, getVolume3DCustom, load, loadObject, loadShape, loadVolume, loadVolume, loadVolume, setAlpha, setAlpha, setVolume3D, setVolume3D, setVolume3D, setVolume3D, setVolume3DWorker

Methods inherited from class mgui.io.FileLoader

getComplementIOType, getFailureMessage, getFile, getIOType, getOptions, getProgressMessage, getSuccessMessage, getTitle, getWriterComplement, load, load, loadObject, loadObject, loadObject, setFile, setOptions, setURL, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

dataset

protected WunilDataset dataset

Constructor Details

WunilVolumeLoader

public WunilVolumeLoader()

WunilVolumeLoader

public WunilVolumeLoader(java.io.File file)

Method Details

setVolume3DBlocking

public boolean setVolume3DBlocking(Volume3DInt volume,
java.lang.String column,
int v,
VolumeInputOptions options,
ProgressUpdater progress)
                            throws ShapeIOException

Specified by:

setVolume3DBlocking in class VolumeFileLoader

Throws:

ShapeIOException

getDataset

public WunilDataset getDataset()

getVolumeMetadata

public VolumeMetadata getVolumeMetadata()
                                 throws java.io.IOException,
java.io.FileNotFoundException

Description copied from class: VolumeFileLoader

Returns a set of metadata describing the current volume file.

Specified by:

getVolumeMetadata in class VolumeFileLoader

Returns:

Throws:

java.io.IOException

java.io.FileNotFoundException

hasDataset

protected boolean hasDataset()

loadDataset

protected boolean loadDataset()