Index
All Classes|All Packages
G
- g - Variable in class au.edu.unsw.cse.View3d
- g2d - Variable in class mgui.interfaces.graphics.util.DrawingEngine
- gaussian_cutoff - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
- GE_GENERAL - Static variable in class mgui.interfaces.graphs.InterfaceGraphEvent
- GE_LABELS - Static variable in class mgui.interfaces.graphs.InterfaceGraphEvent
- General - mgui.interfaces.graphics.GraphicEvent.EventType
- General - mgui.interfaces.graphics.WindowEvent.EventType
- General - mgui.interfaces.shapes.util.ShapeEvent.EventType
- General - mgui.interfaces.trees.TreeEvent.EventType
- generate_control_meshes - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
- generateComposites() - Method in class mgui.interfaces.shapes.VolumeSet3DInt
-
This method updates the overlay composite
Grid3Dby sampling from all members and applying their transparency levels. - generateRayShapes(ArrayList<SampleRay>, String) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
-
Generates a vector 3D set from a list of sample rays; adds sample data to shapes.
- geom_x - Variable in class mgui.io.domestic.shapes.VolumeInputOptions
- geom_y - Variable in class mgui.io.domestic.shapes.VolumeInputOptions
- geom_z - Variable in class mgui.io.domestic.shapes.VolumeInputOptions
- geometryChanged() - Method in class mgui.interfaces.shapes.Shape3DInt
-
Called when this shape's geometry has changed
- GeometryFunctions - Class in mgui.geometry.util
-
Utility class providing a library of common geometric functions.
- GeometryFunctions() - Constructor for class mgui.geometry.util.GeometryFunctions
- GeometryFunctions.AnglePoint2D - Class in mgui.geometry.util
- GeometryFunctions.Point3fComp - Class in mgui.geometry.util
- get() - Method in class au.edu.unsw.cse.EdgeStack
- get() - Method in class au.edu.unsw.cse.Mousedelta
- get() - Method in class au.edu.unsw.cse.Viewer
- get(int) - Method in class mgui.interfaces.maps.NameMap
- get(String) - Method in class mgui.interfaces.maps.NameMap
- get(String) - Method in class mgui.util.OptionList
- get_locations - Variable in class mgui.io.domestic.graphs.GraphInputOptions
- get2DShapes() - Method in class mgui.interfaces.shapes.SectionSet3DInt
-
Returns a list of all 2D shapes in this section set
- get2DShapes() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
- get2DShapes(boolean) - Method in class mgui.interfaces.shapes.SectionSet3DInt
-
Returns a list of all 2D shapes in this section set
- get2DShapes(boolean) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
-
Returns all shapes in this shape set; if
recurseisfalse, limits this list to the set's members; otherwise, also adds all members of all subsets (along with the sets themselves). - get3DShapes(boolean) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
-
Returns all 3D shapes in this shape set; if
recurseisfalse, limits this list to the set's members; otherwise, also adds all members of all subsets (along with the sets themselves). - getA() - Method in class mgui.morph.sections.MappedPolygon2D
- getA_Base() - Method in class mgui.neuro.components.cortical.functions.BiexponentialFunction
- getA_ee() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getA_ei() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getA_ie() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getA_Max() - Method in class mgui.neuro.components.cortical.functions.BiexponentialFunction
- getA_ne() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getA_ni() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getAbsoluteIndex(int[]) - Method in class mgui.geometry.Grid3D
-
Returns the absolute index of the voxel specified by the integer array
[s,t,r]. - getAbsoluteIndex(int, int, int) - Method in class mgui.geometry.Grid3D
-
Returns absolute index of this coordinate, which is given by: k * xSize * ySize + j * xSize + i (x changes fastest)
- getAbsoluteInstanceDir() - Method in class mgui.interfaces.projects.InterfaceProject
- getAddFieldStatement(String, DataField) - Static method in class mgui.datasources.util.DataSourceFunctions
-
Returns an SQL statement for adding
fieldtotable. - getAddFieldStatement(String, DataField, DataSourceDriver) - Static method in class mgui.datasources.util.DataSourceFunctions
-
Returns an SQL statement for adding
fieldtotable. - getAlgorithm(String, ArrayList<Point3f>) - Static method in class mgui.geometry.util.ConvexHullFunctions
- getAllFields(Class<?>) - Static method in class mgui.classes.ClassFunctions
-
Retrieves all public, protected, and private fields of this class and its superclasses.
- getAllNeighbours(int, NeighbourhoodMesh, boolean[], int[], boolean[]) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Searches for all neighbours of
ninnmesh. - getAllSubdirectories() - Method in class mgui.interfaces.projects.InterfaceProject
-
Returns a list of all directories and their subdirectories contained in this project.
- getAllSubdirectories(ArrayList<ProjectDirectory>) - Method in class mgui.interfaces.projects.InterfaceProject
-
Returns a list of all directories and their subdirectories contained in this list of directories.
- getAllUnits() - Static method in class mgui.interfaces.InterfaceEnvironment
- getAllVertexData() - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns all vertex-wide data associated with this shape.
- getAllVertexData() - Method in class mgui.interfaces.shapes.Shape2DInt
- getAllVertexData() - Method in class mgui.interfaces.shapes.Vector3DInt
- getAllWindows() - Method in class mgui.interfaces.InterfaceDisplayPanel
- getAllWindows() - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
-
Returns all graphics panels from all tabs in this display panel.
- getAlpha() - Method in class mgui.image.util.WindowedColourModel
- getAlpha() - Method in class mgui.interfaces.shapes.InterfaceShape
-
Gets the current transparency level for this shape.
- getAlpha() - Method in class mgui.interfaces.shapes.Shape2DInt
- getAlpha() - Method in class mgui.interfaces.shapes.Shape3DInt
- getAlpha() - Method in class mgui.util.Colour
- getAlpha() - Method in class mgui.util.Colour1f
- getAlpha() - Method in class mgui.util.Colour2f
- getAlpha() - Method in class mgui.util.Colour3f
- getAlpha() - Method in class mgui.util.Colour4f
- getAlpha(int) - Method in class mgui.image.util.WindowedColourModel
- getAlpha(int) - Method in class mgui.interfaces.shapes.VolumeSet3DInt
-
Gets the transparency for the i'th volume
- getAlpha(Object) - Method in class mgui.image.util.WindowedColourModel
- getAlphaIndex() - Method in class mgui.image.util.WindowedColourModel
- getAlphaMax() - Method in class mgui.image.util.WindowedColourModel
- getAlphaMin() - Method in class mgui.image.util.WindowedColourModel
- getAlphaMode() - Method in class mgui.interfaces.shapes.Mesh3DInt
- getAmplitude() - Method in class mgui.models.updaters.PulseTrainUpdater.CurrentPulse
- getAmplitude() - Method in class mgui.neuro.updaters.PulseTrainUpdater.CurrentPulse
- getAnchor(double, float) - Method in class mgui.interfaces.maps.ContinuousColourMap
- getAngle(Point2d, Point2d) - Static method in class mgui.geometry.util.GeometryFunctions
- getAngle(Point2f, Point2f) - Static method in class mgui.geometry.util.GeometryFunctions
- getAngle(Point2f, Point2f, Point2f) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines the angle between vectors AB and BC.
- getAngle(Point3f, Point3f, Point3f, Point3f) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns the angle between two triangular faces, defined such that AB is a common edge.
- getAngleDiff(double, double) - Static method in class mgui.geometry.util.GeometryFunctions
- getAngleDiff(Radius2D) - Method in class mgui.geometry.Radius2D
- getAngleDiffCW(double, double) - Static method in class mgui.geometry.util.GeometryFunctions
- getAngles() - Method in class mgui.geometry.Triangle3D
-
Returns face angles as an array ordered by: ∠A, ∠B, ∠C
- getAngleTangent(double, double) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns an angle tangent to the given node angles in a polygon
- getAnnotRGB(int) - Method in class mgui.io.foreign.freesurfer.FreesurferVertexDataLoader
- getAntialiasing() - Method in class mgui.interfaces.shapes.Polygon3DInt
-
Gets the current anti-aliasing policy.
- getAppear() - Method in class au.edu.unsw.cse.VRMLState
- getAppletContext() - Method in class au.edu.unsw.cse.FakeAppletStub
- getAppletInfo() - Method in class au.edu.unsw.cse.Applet3d
- getAppletInfo() - Method in class au.edu.unsw.cse.AppletDepth
- getAppletInfo() - Method in class au.edu.unsw.cse.AppletHull
- getAppletInfo() - Method in class au.edu.unsw.cse.AppletPatch
- getApplicationDataDir() - Static method in class mgui.interfaces.InterfaceEnvironment
-
Returns the application data directory; if this is not set, returns the current dir
- getApplyClip() - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getApplyMasks() - Method in class mgui.interfaces.shapes.Volume3DInt
-
Whether currently set masks are to be applied or not.
- getApplySigmoid() - Method in class mgui.neuro.components.cortical.functions.BiexponentialFunction
- getArea(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns the surface area of the given mesh
- getArea(Polygon2D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines the area of
thisPoly. - getArea(Triangle3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines the area of triangle
tri. - getArea(Point3f, Point3f, Point3f) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines the area of triangle defined by three points.
- getArgString(String[]) - Static method in class mgui.neuro.imaging.camino.CaminoFunctions
- getArgString(String[]) - Static method in class mgui.pipelines.PipelineFunctions
- getArguments(String, InterfaceProject, PipelineState) - Method in class mgui.pipelines.PipelineProcessInstance
-
Returns the parameters of this process instance as an array of
Stringvalues, for the specific instance and project. - getArguments(String, PipelineState) - Method in class mgui.pipelines.PipelineProcessInstance
-
Returns the parameters of this process instance as an array of
Stringvalues, for the specific instance and root directory. - getArguments(PipelineState) - Method in class mgui.pipelines.PipelineProcessInstance
-
Returns the parameters of this process instance as an array of
Stringvalues. - getArrowScale() - Method in class mgui.interfaces.shapes.VectorSet3DInt
- getArrowSize() - Method in class mgui.interfaces.graphics.util.Axes3D
- getArrowVisibilityPredicate(boolean) - Static method in class mgui.interfaces.graphs.util.GraphFunctions
-
Returns a predicate object to control the visibility of edge arrows in a graph.
- getAsContinuousMap(int) - Method in class mgui.interfaces.maps.DiscreteColourMap
-
Converts this discrete map to a continuous map by sampling at 0, N and
no_anchors- 2 evenly-spaced indices. - getAsList() - Method in class mgui.interfaces.attributes.AttributeList
- getAsList() - Method in class mgui.interfaces.variables.MatrixInt
- getAsList() - Method in class mgui.interfaces.variables.StringVectorInt
- getAsList() - Method in class mgui.interfaces.variables.VariableInt
-
Returns this variable as a single list of values.
- getAsList() - Method in class mgui.interfaces.variables.VectorInt
- getAsVector4d() - Method in class mgui.geometry.Plane3D
-
Return plane as a Vector4d defining the plane equation:
- getAttribute() - Method in class mgui.interfaces.attributes.AttributeEvent
- getAttribute() - Method in class mgui.interfaces.attributes.tree.AttributeButton
- getAttribute(int) - Method in class mgui.interfaces.attributes.AttributeList
-
Returns the attribute at the specified index.
- getAttribute(int) - Method in class mgui.interfaces.attributes.table.AttributeTableModel
- getAttribute(int) - Method in class mgui.interfaces.attributes.table.InterfaceAttributeTable
- getAttribute(SGTData) - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
-
Returns the attributes for the given data object.
- getAttribute(String) - Method in class mgui.datasources.DataConnection
- getAttribute(String) - Method in class mgui.datasources.DataSourceDriver
- getAttribute(String) - Method in class mgui.geometry.mesh.MeshEngine
- getAttribute(String) - Method in class mgui.geometry.neuro.mesh.NeuroMeshEngine
- getAttribute(String) - Method in class mgui.geometry.volume.VolumeEngine
- getAttribute(String) - Method in class mgui.interfaces.attributes.AttributeList
-
Gets the
Attributeobject for the specified name; returnsnullif this attribute does not exist. - getAttribute(String) - Method in interface mgui.interfaces.attributes.AttributeObject
-
Returns a specific attribute for this object.
- getAttribute(String) - Method in class mgui.interfaces.attributes.InterfaceAttributePanel
- getAttribute(String) - Method in class mgui.interfaces.graphics.Graphic2DGrid
- getAttribute(String) - Method in class mgui.interfaces.graphics.util.DrawingEngine
- getAttribute(String) - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
- getAttribute(String) - Method in class mgui.interfaces.InterfacePanel
- getAttribute(String) - Method in class mgui.interfaces.layouts.InterfaceLayoutPanel
- getAttribute(String) - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
- getAttribute(String) - Method in class mgui.interfaces.maps.Camera3D
- getAttribute(String) - Method in class mgui.interfaces.plots.InterfacePlot
- getAttribute(String) - Method in class mgui.interfaces.plots.InterfacePlotObject
- getAttribute(String) - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
-
Returns the attributes for the data object with the given name.
- getAttribute(String) - Method in class mgui.interfaces.projects.InterfaceProject
- getAttribute(String) - Method in class mgui.interfaces.shapes.InterfaceShape
- getAttribute(String) - Method in class mgui.interfaces.shapes.paths.PathDataRenderer
- getAttribute(String) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
- getAttribute(String) - Method in class mgui.interfaces.shapes.util.ShapeEngine
- getAttribute(String) - Method in class mgui.interfaces.tables.InterfaceTableModel
- getAttribute(String) - Method in class mgui.interfaces.variables.VariableInt
- getAttribute(String) - Method in class mgui.models.dynamic.functions.Function
- getAttribute(String) - Method in class mgui.models.networks.AbstractNetworkModel
- getAttribute(String) - Method in class mgui.models.updaters.PulseTrainUpdater.CurrentPulse
- getAttribute(String) - Method in class mgui.models.updaters.SimpleEnvironmentUpdater
- getAttribute(String) - Method in class mgui.neuro.components.AbstractNeuroComponent
- getAttribute(String) - Method in class mgui.neuro.graphs.NeuralNetGraph
- getAttribute(String) - Method in class mgui.neuro.updaters.PulseTrainUpdater.CurrentPulse
- getAttributeList() - Method in class mgui.datasources.DataField
- getAttributeList() - Method in class mgui.datasources.DataTable
- getAttributeList() - Method in class mgui.io.domestic.attributes.AttributeXMLHandler
- getAttributeObjects() - Method in class mgui.interfaces.InterfaceWorkspace
-
Returns a list of all the attribute objects contained in this workspace.
- getAttributePanel() - Method in class mgui.interfaces.attributes.table.InterfaceAttributeTable
- getAttributes() - Method in class mgui.datasources.DataConnection
- getAttributes() - Method in class mgui.datasources.DataSourceDriver
- getAttributes() - Method in class mgui.geometry.mesh.MeshEngine
- getAttributes() - Method in class mgui.geometry.neuro.mesh.NeuroMeshEngine
- getAttributes() - Method in class mgui.geometry.volume.VolumeEngine
- getAttributes() - Method in interface mgui.interfaces.attributes.AttributeObject
-
Returns the list of current attributes for this object.
- getAttributes() - Method in class mgui.interfaces.attributes.InterfaceAttributePanel
- getAttributes() - Method in class mgui.interfaces.graphics.Graphic2DGrid
- getAttributes() - Method in class mgui.interfaces.graphics.util.DrawingEngine
- getAttributes() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
- getAttributes() - Method in class mgui.interfaces.InterfacePanel
- getAttributes() - Method in class mgui.interfaces.layouts.InterfaceLayoutPanel
- getAttributes() - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
- getAttributes() - Method in class mgui.interfaces.maps.Camera3D
- getAttributes() - Method in class mgui.interfaces.plots.InterfacePlot
- getAttributes() - Method in class mgui.interfaces.plots.InterfacePlotObject
- getAttributes() - Method in class mgui.interfaces.projects.InterfaceProject
- getAttributes() - Method in class mgui.interfaces.shapes.InterfaceShape
- getAttributes() - Method in class mgui.interfaces.shapes.paths.PathDataRenderer
- getAttributes() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
- getAttributes() - Method in class mgui.interfaces.shapes.util.ShapeEngine
- getAttributes() - Method in class mgui.interfaces.shapes.VertexDataColumn
- getAttributes() - Method in class mgui.interfaces.tables.InterfaceTableModel
- getAttributes() - Method in class mgui.interfaces.variables.VariableInt
- getAttributes() - Method in class mgui.models.dynamic.functions.Function
- getAttributes() - Method in class mgui.models.networks.AbstractNetworkModel
- getAttributes() - Method in class mgui.models.updaters.PulseTrainUpdater.CurrentPulse
- getAttributes() - Method in class mgui.models.updaters.SimpleEnvironmentUpdater
- getAttributes() - Method in class mgui.neuro.components.AbstractNeuroComponent
- getAttributes() - Method in class mgui.neuro.graphs.NeuralNetGraph
- getAttributes() - Method in class mgui.neuro.updaters.PulseTrainUpdater.CurrentPulse
- getAttributes(String) - Method in class mgui.geometry.mesh.MeshEngine
- getAttributes(String) - Method in class mgui.geometry.neuro.mesh.NeuroMeshEngine
- getAttributes(String) - Method in class mgui.geometry.volume.VolumeEngine
-
Returns the attributes corresponding to
key, wherekeyis of the form "operation (method)". - getAttributes(String) - Method in class mgui.interfaces.shapes.util.ShapeEngine
- getAttributes(String, String) - Method in class mgui.geometry.mesh.MeshEngine
- getAttributes(String, String) - Method in class mgui.geometry.neuro.mesh.NeuroMeshEngine
- getAttributes(String, String) - Method in class mgui.geometry.volume.VolumeEngine
- getAttributes(String, String) - Method in class mgui.interfaces.graphics.util.DrawingEngine
- getAttributes(String, String) - Method in class mgui.interfaces.shapes.util.ShapeEngine
- getAttributes(String, String) - Method in interface mgui.interfaces.util.Engine
-
Returns the attributes list corresponding to the
operationandmethod. - getAttributeValue(String) - Method in class mgui.datasources.DataConnection
- getAttributeValue(String) - Method in class mgui.datasources.DataSourceDriver
- getAttributeValue(String) - Method in class mgui.geometry.mesh.MeshEngine
- getAttributeValue(String) - Method in class mgui.geometry.neuro.mesh.NeuroMeshEngine
- getAttributeValue(String) - Method in class mgui.geometry.volume.VolumeEngine
- getAttributeValue(String) - Method in interface mgui.interfaces.attributes.AttributeObject
-
Gets the value of attribute
name, ornullif it does not exist. - getAttributeValue(String) - Method in class mgui.interfaces.graphics.Graphic2DGrid
- getAttributeValue(String) - Method in class mgui.interfaces.graphics.util.DrawingEngine
- getAttributeValue(String) - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
- getAttributeValue(String) - Method in class mgui.interfaces.InterfacePanel
- getAttributeValue(String) - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
- getAttributeValue(String) - Method in class mgui.interfaces.maps.Camera3D
- getAttributeValue(String) - Method in class mgui.interfaces.plots.InterfacePlotObject
- getAttributeValue(String) - Method in class mgui.interfaces.projects.InterfaceProject
- getAttributeValue(String) - Method in class mgui.interfaces.shapes.InterfaceShape
- getAttributeValue(String) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
- getAttributeValue(String) - Method in class mgui.interfaces.shapes.util.ShapeEngine
- getAttributeValue(String) - Method in class mgui.interfaces.tables.InterfaceTableModel
- getAttributeValue(String) - Method in class mgui.interfaces.variables.VariableInt
- getAttributeValue(String) - Method in class mgui.models.dynamic.functions.Function
- getAttributeValue(String) - Method in class mgui.models.networks.AbstractNetworkModel
- getAttributeValue(String) - Method in class mgui.models.networks.components.AbstractNetworkComponent
- getAttributeValue(String) - Method in class mgui.models.updaters.PulseTrainUpdater.CurrentPulse
- getAttributeValue(String) - Method in class mgui.models.updaters.SimpleEnvironmentUpdater
- getAttributeValue(String) - Method in class mgui.neuro.updaters.PulseTrainUpdater.CurrentPulse
- getAutoCenter() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getAutoInterval() - Method in class mgui.interfaces.plots.sgt.SgtAxis
-
Returns the number of intervals to use when constructing an automatic range.
- getAverageEdgeLength(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns the average edge length keyin a mesh.
- getAveragePlane(ArrayList<Point3f>) - Static method in class mgui.geometry.util.GeometryFunctions
-
Return a plane representing the average plane of a set of nodes note, in the degenerative case the average cross product will be zero; thus no plane will be defined.
- getAverageRayPoints(ArrayList<ArrayList<Double>>) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
- getAverageSkullAndScalpMeshes(Mesh3D, int[][], ArrayList<Double>, Point3f) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
-
Returns average meshes for the control points in
A. - getAwtColor(Color3f) - Static method in class mgui.util.Colours
- getAwtColor(Color4f) - Static method in class mgui.util.Colours
- getAxes() - Method in interface mgui.interfaces.shapes.volume.VolumeMetadata
-
Returns the S, T, and R axes of this volume, respectively.
- getAxes() - Method in class mgui.io.foreign.fsl.FSLVolumeMetadata
- getAxes() - Method in class mgui.io.foreign.wunil.WunilDataset
- getAxes() - Method in class mgui.io.standard.nifti.NiftiMetadata
- getAxesSize() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getAxesSize() - Method in class mgui.interfaces.graphics.util.Axes3D
- getAxis() - Method in class mgui.interfaces.plots.sgt.SgtAxis
-
Returns the SGT axis.
- getAxis(int) - Method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
- getAxis(String) - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
-
Returns the axis with the specified name;
nullif no such axis exists. - getAxis(String) - Static method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
- getAxisA() - Method in class mgui.geometry.Ellipse2D
- getAxisB() - Method in class mgui.geometry.Ellipse2D
- getAxisColourX() - Method in class mgui.interfaces.graphics.util.Axes3D
- getAxisColourY() - Method in class mgui.interfaces.graphics.util.Axes3D
- getAxisColourZ() - Method in class mgui.interfaces.graphics.util.Axes3D
- getAxisDistance(K3DBinaryTree.Vertex, Point3f, int) - Method in class mgui.geometry.util.K3DBinaryTree
- getAxisLabelX() - Method in class mgui.interfaces.graphics.util.Axes3D
- getAxisLabelY() - Method in class mgui.interfaces.graphics.util.Axes3D
- getAxisLabelZ() - Method in class mgui.interfaces.graphics.util.Axes3D
- getAxisString(int) - Static method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
- getAxisVector(int) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
- getAxisX() - Method in class mgui.geometry.Plane3D
- getAxisX() - Method in class mgui.interfaces.graphics.util.Axes3D
- getAxisX(Vector3d, double) - Method in class mgui.interfaces.maps.Camera3D
- getAxisXMax() - Method in class mgui.interfaces.plots.osp.InterfaceStripChart
- getAxisXMin() - Method in class mgui.interfaces.plots.osp.InterfaceStripChart
- getAxisXType() - Method in class mgui.interfaces.plots.mgui.PlotMap2D
-
Returns the X axis type for this map
- getAxisY() - Method in class mgui.geometry.Plane3D
- getAxisY() - Method in class mgui.interfaces.graphics.util.Axes3D
- getAxisY(Vector3d, double) - Method in class mgui.interfaces.maps.Camera3D
- getAxisYMax() - Method in class mgui.interfaces.plots.osp.InterfaceStripChart
- getAxisYMin() - Method in class mgui.interfaces.plots.osp.InterfaceStripChart
- getAxisYType() - Method in class mgui.interfaces.plots.mgui.PlotMap2D
-
Returns the Y axis type for this map
- getAxisZ() - Method in class mgui.interfaces.graphics.util.Axes3D
- getAxon() - Method in class mgui.neuro.components.AbstractNeuron
- getAxon() - Method in class mgui.neuro.components.compartments.CompartmentalNeuron
- getAxon() - Method in interface mgui.neuro.components.Neuron
- getB() - Method in class mgui.morph.sections.MappedPolygon2D
- getBackFlip() - Method in class mgui.interfaces.shapes.Mesh3DInt
- getBackgroundColour() - Method in class mgui.interfaces.graphics.InterfaceGraphic
- getBackgroundColour() - Method in class mgui.interfaces.shapes.SectionSet2DInt
- getBackgroundNonSelectionColor() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
-
Returns the background color to be used for non selected nodes.
- getBackgroundSelectionColor() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
-
Returns the color to use for the background if node is selected.
- getBaseGrid() - Method in class mgui.interfaces.shapes.dynamic.Volume4DInt
- getBaseLayer() - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
-
Returns the base layer; i.e., containing axes + labels.
- getBasePt() - Method in class mgui.geometry.Box3D
-
Returns a copy of this box's base point.
- getBasicInstance(int, double) - Method in class mgui.neuro.components.simple.SimpleNeuron
-
Returns an instance of a basic simple neuron with dendCount basic (non branching) dendrites, each with a resting potential of restingV.
- getBasicInstance(int, double) - Method in class mgui.neuro.components.simple.SimpleSensoryNeuron
- getBasicNormalStats(ArrayList<MguiNumber>) - Static method in class mgui.stats.StatFunctions
-
Return statistics describing a set of normally distributed values ordered as follows: mean sum standard deviation sum of squares minimum maximum
- getBasicNormalStatsDouble(ArrayList<Double>) - Static method in class mgui.stats.StatFunctions
-
Return statistics describing a set of normally distributed values ordered as follows: mean sum standard deviation sum of squares
- getBasicSensoryNeuron() - Static method in class mgui.neuro.components.simple.SimpleSensoryNeuron
- getBasicSimpleCorticalRegion() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
- getBasicUnit() - Static method in class mgui.neuro.components.AbstractNeuron
- getBasicUnit() - Static method in class mgui.neuro.components.simple.SimpleMotorNeuron
- getBasicUnit() - Static method in class mgui.neuro.components.simple.SimpleNeuron
- getBasicUnit() - Static method in class mgui.neuro.components.simple.SimpleSensoryNeuron
- getBasisTransform() - Method in class mgui.geometry.Box3D
-
Returns a matrix which will transform a vector expressed in world (model) coordinates to one expressed with respect to this box's coordinate space.
- getBifurcatedPaths() - Method in class mgui.morph.sections.MappedPolygon2DPath
-
Adds a map to this path and creates new paths for each additional map in the buffer.
- getBinaryStream(int) - Method in class mgui.datasources.DataRecordSet
-
Fetches the serialized binary data stream from a specified field in the data set.
- getBinaryStream(String) - Method in class mgui.datasources.DataRecordSet
- getBinAtPoint(Point) - Method in class mgui.interfaces.stats.HistogramPlot
- getBitpix() - Method in class mgui.io.standard.nifti.Nifti1Dataset
-
Get the bitpix field
- getBlobsFromVolume(Volume3DInt) - Method in class mgui.geometry.volume.VolumeEngine
-
Extract blobs from a thresholded volume
- getBlobsFromVolume(Volume3DInt, String, String, ProgressUpdater, int, double) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Finds connected blobs in a thresholded volume.
- getBlobsFromVolumeBlocking(Volume3DInt, String, ProgressUpdater, int, double) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Finds connected blobs in a thresholded volume.
- getBlue() - Method in class mgui.util.Colour
- getBlue() - Method in class mgui.util.Colour1f
- getBlue() - Method in class mgui.util.Colour2f
- getBlue() - Method in class mgui.util.Colour3f
- getBlue() - Method in class mgui.util.Colour4f
- getBlue(int) - Method in class mgui.image.util.WindowedColourModel
- getBlue(Object) - Method in class mgui.image.util.WindowedColourModel
- getBlueIndex() - Method in class mgui.image.util.WindowedColourModel
- getBoolCornerPoints(Polygon2DInt, double, double) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
- getBoolParameter(String) - Method in class au.edu.unsw.cse.Applet3d
- getBootstrapSample(Matrix, int) - Static method in class mgui.stats.StatFunctions
-
Generates a bootstrap sample of
matrixby randomly sampling from itNtimes, with the possibility of sampling the same observation multiple times. - getBorderColour() - Method in class mgui.interfaces.graphics.util.Axes3D
- getBorderSelectionColor() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
-
Returns the color the border is drawn.
- getBottomPointingRays(ArrayList<SampleRay>, float) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
-
Returns a list of indices corresponding to rays which project to a point with a z coordinate below
bottom_z. - getBoundaryNodeIndices(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
- getBoundaryNodes(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Determine which nodes are boundary nodes, return an array of booleans.
- getBoundBox() - Method in class mgui.geometry.Shape3D
- getBoundBox() - Method in class mgui.geometry.Sphere3D
- getBoundBox() - Method in class mgui.interfaces.shapes.Shape3DInt
- getBoundBox2D() - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getBoundBoxNode() - Method in class mgui.interfaces.shapes.Shape3DInt
-
Return's this shape's bounding box node.
- getBoundingBox() - Method in class mgui.io.standard.nifti.NiftiVolumeLoader
- getBoundingBox(ArrayList<Point3f>) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns the box (having standard axes) that bounds this set of points.
- getBounds() - Method in class mgui.geometry.Shape2D
-
Returns a rectangle which bounds this 2D shape
- getBounds() - Method in class mgui.geometry.Text2D
- getBounds() - Method in class mgui.interfaces.maps.Map2D
- getBounds() - Method in class mgui.interfaces.shapes.Line2DInt
- getBounds() - Method in class mgui.interfaces.shapes.Shape2DInt
- getBounds() - Method in class mgui.interfaces.shapes.Text2DInt
- getBounds() - Method in interface mgui.interfaces.shapes.volume.VolumeMetadata
-
The geometric bounds of this volume; note that the bounding box will be scaled up by one voxel length in each axis direction, and its origin will be shifted a half voxel, such that voxel center points are positioned correctly.
- getBounds() - Method in class mgui.io.foreign.fsl.FSLVolumeMetadata
- getBounds() - Method in class mgui.io.foreign.wunil.WunilDataset
- getBounds() - Method in class mgui.io.standard.nifti.NiftiMetadata
- getBoundShape() - Method in class mgui.interfaces.shapes.Shape2DInt
- getBoundSphere() - Method in class mgui.interfaces.shapes.Shape3DInt
- getBoundsScale() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getBox() - Method in class mgui.interfaces.shapes.Box3DInt
- getBox() - Method in class mgui.interfaces.shapes.Volume3DInt
- getBox3D(Point3f, Point3f) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns a Box3D defined by two points
- getBufferImage(InterfaceGraphic3D) - Method in class mgui.io.domestic.videos.ImageStackVideoWriter
- getBufferSize() - Method in interface mgui.interfaces.io.DataBuffer
-
Returns the size of this buffer
- getButtonType() - Method in class mgui.interfaces.InterfaceDialogBox
- getByReferenceUrl() - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
-
Returns a URL string for the latest call to GridVertexDataColumn.writeXML(int,java.io.Writer,mgui.io.standard.xml.XMLOutputOptions,mgui.interfaces.ProgressUpdater).
- getByReferenceUrls() - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns a URL string for the latest call to InterfaceShape.writeXML(int,java.io.Writer).
- getByReferenceUrls() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
-
Returns a list of URL strings for the latest call to ShapeSet3DInt.writeXML(int,java.io.Writer,mgui.io.standard.xml.XMLOutputOptions,mgui.interfaces.ProgressUpdater).
- getByRefImages() - Method in class mgui.interfaces.shapes.volume.Volume3DTexture
- getBytes(double, DataType, ByteOrder) - Static method in class mgui.io.util.IoFunctions
- getByteSize() - Method in class mgui.numbers.MguiBoolean
- getByteSize() - Method in class mgui.numbers.MguiDouble
- getByteSize() - Method in class mgui.numbers.MguiFloat
- getByteSize() - Method in class mgui.numbers.MguiInteger
- getByteSize() - Method in class mgui.numbers.MguiLong
- getByteSize() - Method in interface mgui.numbers.MguiNumber
- getByteSize() - Method in class mgui.numbers.MguiShort
- getByteValue(double) - Static method in class mgui.geometry.volume.VolumeFunctions
- getCached(int, int) - Method in class mgui.interfaces.datasources.DataTableModel
- getCamera() - Method in class mgui.interfaces.events.CameraEvent
- getCamera() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getCamera() - Method in class mgui.interfaces.maps.Map3D
- getCameraClone() - Method in class mgui.interfaces.graphics.View3D
- getCameraListener() - Method in class mgui.interfaces.shapes.Shape3DInt
- getCameraListener() - Method in class mgui.interfaces.shapes.Volume3DInt
- getCameraRotation(double, Point3d) - Method in class mgui.interfaces.maps.Camera3D
-
Returns a transform corresponding to this camera's rotation, but not translation.
- getCameraTransform() - Method in class mgui.interfaces.maps.Camera3D
-
Returns a transform to apply to ViewPlatform, corresponding to this camera.
- getCanvas() - Method in class mgui.interfaces.graphics.CanvasEvent
- getCanvas() - Method in class mgui.interfaces.graphics.InterfaceCanvas3D
- getCategory() - Method in class mgui.interfaces.layouts.CategoryTitle
- getCategoryComponent(String) - Method in class mgui.interfaces.layouts.CategoryLayout
- getCellEditor() - Method in class mgui.interfaces.attributes.table.InterfaceAttributeTable
- getCellEditor(int, int) - Method in class mgui.interfaces.attributes.table.InterfaceAttributeTable
- getCellEditorValue() - Method in class mgui.interfaces.attributes.table.AttributeCellEditor
- getCellEditorValue() - Method in class mgui.interfaces.attributes.tree.AttributeTreeCellEditor
- getCellEditorValue() - Method in class mgui.interfaces.graphics.InterfaceGraphicPanel.GraphicWindowListEditor
- getCellEditorValue() - Method in class mgui.interfaces.maps.DiscreteColourMapTable.Editor
- getCellEditorValue() - Method in class mgui.interfaces.queries.tables.QueryResultTableTreeEditor
- getCellEditorValue() - Method in class mgui.interfaces.shapes.trees.ShapeTreeCellEditor
- getCellEditorValue() - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel.SliderTableColumn
- getCellEditorValue() - Method in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel.AlphaSliderEditor
- getCellEditorValue() - Method in class mgui.interfaces.trees.AbstractTreeCellEditor
- getCellEditorValue() - Method in class mgui.interfaces.trees.InterfaceTreeCellEditor
- getCellRenderer(int, int) - Method in class mgui.interfaces.attributes.table.InterfaceAttributeTable
- getCellTypes(ArrayList<DataField>) - Method in class mgui.io.domestic.datasources.ExportDataTableExcelWriter
-
Returns the Excel cell type corresponding to each field
- getCenter() - Method in class mgui.geometry.Box3D
- getCenter() - Method in class mgui.geometry.Ellipse2D
- getCenter() - Method in class mgui.geometry.Shape3D
- getCenterOfGravity() - Method in class mgui.interfaces.shapes.Shape3DInt
- getCenterOfGravity(ArrayList<Point3f>) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns the center of gravity of this shape, which is the mean of its coordinates.
- getCenterOfGravity(Cube3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns the center of gravity of this shape, which is the mean of its coordinates.
- getCenterOfGravity(Polygon2D) - Static method in class mgui.geometry.Polygon2D
- getCenterOfGravity(Shape2D) - Static method in class mgui.geometry.util.GeometryFunctions
- getCenterOfRotation() - Method in class mgui.interfaces.maps.Camera3D
- getCenterOfVoxel(int, int, int) - Method in class mgui.interfaces.shapes.Volume3DInt
- getCenterPoint() - Method in class mgui.interfaces.shapes.Shape2DInt
- getCenterPoint() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
-
Returns the center point of this shape set.
- getCenterPt() - Method in class mgui.geometry.Polygon2D
- getCenterPt() - Method in class mgui.geometry.Rect2D
- getCenterPt() - Method in class mgui.geometry.Shape2D
- getChangePrimaryKeyStatement(String, DataField) - Static method in class mgui.datasources.util.DataSourceFunctions
-
Returns an SQL statement to update
tableby adding or dropping a primary key fornew_field. - getChangePrimaryKeyStatement(String, DataField, DataSourceDriver) - Static method in class mgui.datasources.util.DataSourceFunctions
-
Returns an SQL statement to update
tableby adding or dropping a primary key fornew_field. - getChannel(String) - Static method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
- getChannelCount() - Method in class mgui.interfaces.io.DataBridgeXY
- getChannelCount() - Method in interface mgui.interfaces.io.DataInputStreamXY
-
Returns the number of Y channels in this stream.
- getChannelCount() - Method in interface mgui.interfaces.io.DataOutputStreamXY
-
Returns the number of Y channels in this stream.
- getChannelCount() - Method in interface mgui.interfaces.io.InterfaceDataSourceTimeSeries
-
Returns the number of Y channels in this source.
- getChannelCount() - Method in interface mgui.interfaces.io.InterfaceDataSourceXY
-
Returns the number of Y channels in this source.
- getChannelCount() - Method in class mgui.interfaces.plots.PlotTimeSeriesDataSource
- getChannelCount() - Method in class mgui.interfaces.plots.PlotXYDataSource
- getChannelCount() - Method in class mgui.models.environments.SimpleEnvironmentInputDataSource
- getChannelCount() - Method in class mgui.models.environments.SimpleEnvironmentObservableDataSource
- getChannelNames() - Method in interface mgui.interfaces.io.NamedDataSource
- getChannelNames() - Method in class mgui.interfaces.plots.MatrixPlotDataSource
- getChannelNames() - Method in class mgui.interfaces.plots.PlotTimeSeriesDataSource
- getChannelNames() - Method in class mgui.interfaces.plots.PlotXYDataSource
- getChannelNames() - Method in class mgui.interfaces.plots.VariablePlotTimeSeriesDataSource
- getChannelNames() - Method in class mgui.interfaces.plots.VariablePlotXYDataSource
- getChannelNames() - Method in class mgui.models.environments.AbstractEnvironmentDataSource
- getChannelSize() - Method in class mgui.io.standard.nifti.NiftiMetadata
- getChannelSize(String) - Method in class mgui.interfaces.plots.PlotXYDataSource
- getCharLimit() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
- getChild3D() - Method in class mgui.interfaces.shapes.Shape2DInt
- getChildForShape(InterfaceShape) - Method in class mgui.interfaces.shapes.trees.ShapeModel3DTreeNode
- getChildForShape(InterfaceShape) - Method in class mgui.interfaces.shapes.trees.ShapeTreeNode
- getChildNode() - Method in class mgui.interfaces.trees.TreeEvent
- getChildren() - Method in class mgui.interfaces.trees.InterfaceTreeNode
- getChildren(TreeNode) - Static method in class mgui.interfaces.trees.util.TreeFunctions
- getChunk(byte[]) - Static method in class mgui.neuro.imaging.camino.tasks.Shredder2
-
Reads in the next chunk from the standard input into the array chunk and returns a boolean indicating the success of the operation.
- getCircle() - Method in class mgui.interfaces.shapes.Circle2DInt
- getClassName() - Method in class mgui.datasources.DataSourceDriver
- getClassName(String) - Static method in class mgui.datasources.DataSourceDrivers
- getClipboard() - Static method in class mgui.interfaces.InterfaceSession
-
Returns the clipboard for the current session.
- getClipDistances() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getClipDistDown() - Method in class mgui.interfaces.shapes.SectionSet3DInt
-
Gets the downwards clipping distance for this section set
- getClipDistUp() - Method in class mgui.interfaces.shapes.SectionSet3DInt
-
Gets the upwards clipping distance for this section set
- getClipPlanes(int) - Method in class mgui.interfaces.shapes.SectionSet3DInt
-
Get a set of two
ModelClipnodes parallel to this section's plane, at distances defined bygetClipDistUp()andgetClipDistDown(). - getClock() - Method in class mgui.interfaces.graphics.video.Video
-
Gets the current state of the clock.
- getClock() - Method in class mgui.models.dynamic.DynamicModelEngine
- getClock() - Method in interface mgui.models.dynamic.DynamicModelEnvironment
- getClock() - Method in class mgui.models.environments.SimpleEnvironment
- getClosedIcon() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
-
Returns the icon used to represent non-leaf nodes that are not expanded.
- getClosestChild(K3DBinaryTree.K3DNode, Point3f) - Method in class mgui.geometry.util.K3DBinaryTree
- getClosestSection(Point3f) - Method in class mgui.interfaces.shapes.SectionSet3DInt
-
Returns the index of the section in this set which is closest to
point. - getClosestVertex(Mesh3D, int, ArrayList<Integer>, MguiDouble) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns the closest vertex in a list of vertices, or from all vertices if the list is empty.
- getClosestVertex(Shape2D, Point2f) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns the vertex of
shapewhich is closest topoint. - getClosestVertex(Shape3D, Point3f) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns the vertex of
shapewhich is closest topoint. - getClosestVertex(Point2f) - Method in class mgui.interfaces.shapes.Shape2DInt
-
Returns the index of the vertex in this shape which is closest to
point. - getClosestVertex(Point2f) - Method in class mgui.interfaces.shapes.Volume2DInt
- getClosestVertex(Point3f) - Method in class mgui.interfaces.shapes.Shape3DInt
-
Returns the index of the vertex of this shape which is closest to
point. - getClosestVertex(Point3f) - Method in class mgui.interfaces.shapes.Volume3DInt
- getClosestVertex3D(Point2f, Plane3D) - Method in class mgui.interfaces.shapes.Shape2DInt
-
If this shape has a parent
Shape3DIntobject, this method calls the getClosestVertex method of the parent. - getClosestVertices(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns a list of size
mesh.nintegers, such that list(i) = the index of the closest vertex j from vertex i. - getClosestVertices(Mesh3D, ArrayList<Double>) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns a list of size
mesh.nintegers, such that list(i) = the index of the closest vertex j from vertex i. - getCm() - Method in class mgui.neuro.components.compartments.CompartmentalDendrite
- getCode() - Method in interface mgui.models.dynamic.DynamicModelEvent
- getCode() - Method in class mgui.models.events.SimpleEvent
- getCode() - Method in class mgui.neuro.components.simple.SimpleEvent
- getCodeBase() - Method in class au.edu.unsw.cse.FakeAppletStub
- getColor() - Method in class mgui.util.Colour
- getColor() - Method in class mgui.util.Colour4f
- getColor(int) - Method in class au.edu.unsw.cse.View3d
-
get a colour for objects
- getColor3f() - Method in class mgui.util.Colour
- getColor3f() - Method in class mgui.util.Colour3f
- getColor3f() - Method in class mgui.util.Colour4f
- getColor3f(Color) - Static method in class mgui.util.Colours
- getColor3f(Color4f) - Static method in class mgui.util.Colours
- getColor3fArray(ArrayList<MguiNumber>) - Method in class mgui.interfaces.maps.ColourMap
-
Returns an array of Color3f colours mapped from the values in list
- getColor3fArray(ArrayList<MguiNumber>, double, double) - Method in class mgui.interfaces.maps.ColourMap
-
Get an array of colours for the given list of values, given the specified limits.
- getColor4f() - Method in class mgui.util.Colour
- getColor4f() - Method in class mgui.util.Colour3f
- getColor4f() - Method in class mgui.util.Colour4f
- getColor4f(Color) - Static method in class mgui.util.Colours
- getColor4fArray(ArrayList<MguiNumber>) - Method in class mgui.interfaces.maps.ColourMap
-
Returns an array of Color4f colours mapped from the values in list
- getColor4fArray(ArrayList<MguiNumber>, double, double) - Method in class mgui.interfaces.maps.ColourMap
-
Get an array of colours for the given list of values, given the specified limits.
- getColor4fArray(ArrayList<MguiNumber>, double, double) - Method in class mgui.interfaces.maps.ContinuousColourMap
- getColorIndex(int) - Method in class au.edu.unsw.cse.View3d
-
get a colour index - translating -1 to default colour
- getColorIndex(View3d, int) - Method in class au.edu.unsw.cse.Edge3dPlus
- getColorIndex(View3d, int) - Method in class au.edu.unsw.cse.Object3dAdaptor
- getColorIndex(View3d, int) - Method in class au.edu.unsw.cse.Triangle3dPlus
- getColorParameter(String) - Method in class au.edu.unsw.cse.Applet3d
- getColour() - Method in class mgui.interfaces.graphics.Graphic2DGrid
- getColour() - Method in class mgui.interfaces.gui.ColourButton
- getColour() - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
- getColour() - Method in class mgui.interfaces.plots.osp.InterfaceStripChart.Variable
- getColour() - Method in class mgui.util.Colour4f
- getColour(double) - Method in class mgui.interfaces.maps.ColourMap
-
Get colour for the specified value, for the current limits.
- getColour(double, double, double) - Method in class mgui.interfaces.maps.ColourMap
-
Get colour for the specified value, given the specified limits.
- getColour(double, double, double) - Method in class mgui.interfaces.maps.ContinuousColourMap
- getColour(int) - Method in class mgui.interfaces.maps.ColourMap
- getColour(int) - Method in class mgui.interfaces.maps.ContinuousColourMap
- getColour(int) - Method in class mgui.interfaces.maps.DiscreteColourMap
- getColour(Comparable) - Method in class mgui.interfaces.maps.ContinuousColourMap
- getColour(Comparable<?>) - Method in class mgui.interfaces.maps.ColourMap
- getColour(Comparable<?>) - Method in class mgui.interfaces.maps.DiscreteColourMap
- getColour(Object) - Method in class mgui.util.Colour
- getColour(String) - Method in class mgui.interfaces.maps.DiscreteColourMap
- getColourAtValue(double) - Method in class mgui.interfaces.maps.ContinuousColourMap
- getColourAtValue(double, double, double) - Method in class mgui.interfaces.maps.ContinuousColourMap
- getColourAtValue(MguiNumber) - Method in class mgui.interfaces.maps.ContinuousColourMap
- getColourAtValue(MguiNumber, double, double) - Method in class mgui.interfaces.maps.ContinuousColourMap
- getColourBarImage(int, int) - Method in class mgui.interfaces.maps.ContinuousColourBar
- getColourForVector(Vector3f) - Method in class mgui.io.domestic.maps.Vector3ColourMap
- getColourForXML(Attributes) - Static method in class mgui.interfaces.xml.XMLFunctions
- getColourMap() - Method in class mgui.image.util.WindowedColourModel
- getColourMap() - Method in class mgui.interfaces.plots.mgui.MatrixImagePlot
-
Return the current colour map
- getColourMap() - Method in class mgui.interfaces.plots.osp.InterfaceStripChart
- getColourMap() - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns the ColourMap associated with the current data column.
- getColourMap() - Method in class mgui.interfaces.shapes.PointSet2DInt
- getColourMap() - Method in class mgui.interfaces.shapes.VertexDataColumn
-
Returns the colour map associated with this column, or
nullif there is no associated colour map - getColourMap(String) - Static method in class mgui.interfaces.InterfaceEnvironment
-
Gets a the colour map with the name
name. - getColourMap(String) - Method in class mgui.interfaces.shapes.InterfaceShape
-
Gets the colour map for
column. - getColourMapMax() - Method in class mgui.interfaces.plots.mgui.MatrixImagePlot
-
Return the current colour map maximum value.
- getColourMapMin() - Method in class mgui.interfaces.plots.mgui.MatrixImagePlot
-
Return the current colour map minimum value.
- getColourMaps() - Method in class mgui.interfaces.InterfaceDisplayPanel
- getColourMaps() - Static method in class mgui.interfaces.InterfaceEnvironment
-
Gets a list of currently loaded colour maps.
- getColourMax() - Method in class mgui.interfaces.shapes.VertexDataColumn
-
Returns the data maximum for this column
- getColourMin() - Method in class mgui.interfaces.shapes.VertexDataColumn
-
Returns the data maximum for this column
- getColourModel() - Static method in class mgui.geometry.volume.VolumeFunctions
- getColourModel() - Method in class mgui.interfaces.plots.mgui.MatrixImagePlot
- getColourModel() - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
-
Returns the current colour model
- getColourModel() - Method in class mgui.interfaces.shapes.Volume3DInt
-
Returns the colour model for the current column, or
nullif there is no current column. - getColourModel(int) - Static method in class mgui.geometry.volume.VolumeFunctions
- getColourModel(int, ColourMap) - Static method in class mgui.geometry.volume.VolumeFunctions
- getColourModel(int, ColourMap, boolean) - Static method in class mgui.geometry.volume.VolumeFunctions
- getColourModel(int, ColourMap, double, double, double, double, boolean) - Static method in class mgui.geometry.volume.VolumeFunctions
- getColourModel(String) - Method in class mgui.interfaces.shapes.Volume3DInt
- getColourNf(Colour, int) - Static method in class mgui.util.Colours
- getColourSpace() - Method in class mgui.interfaces.shapes.volume.Volume3DTexture
- getColourType() - Method in class mgui.interfaces.plots.mgui.MatrixImagePlot
-
Return the current colour type.
- getCols() - Method in class mgui.interfaces.plots.InterfacePlotMulti
- getColumn(int) - Method in class mgui.interfaces.variables.MatrixInt
-
Returns column
colas aVectorIntobject. - getColumn(String, int) - Method in class mgui.interfaces.variables.MatrixInt
-
Returns column
colas aVectorIntobject. - getColumnClass(int) - Method in class mgui.interfaces.datasources.DataTableModel
- getColumnClass(int) - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog.YTableModel
- getColumnClass(int) - Method in class mgui.interfaces.plots.sgt.SgtScatterPlotDialog.XYTableModel
- getColumnClass(int) - Method in class mgui.interfaces.shapes.InterfaceShapesPanel.VertexSelectionTableModel
- getColumnClass(int) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel.OverlayVolumeTableModel
- getColumnClass(int) - Method in class mgui.interfaces.trees.AbstractTreeTableModel
- getColumnClass(int) - Method in interface mgui.interfaces.trees.TreeTableModel
-
Returns the type for column number
column. - getColumnClass(int) - Method in class mgui.interfaces.trees.TreeTableModelAdapter
- getColumnClass(int) - Method in class mgui.io.domestic.maps.NameMapOutDialogBox.TableModel
- getColumnClass(int) - Method in class mgui.io.domestic.shapes.PointSet2DInputDialogBox.TableModel
- getColumnClass(int) - Method in class mgui.io.domestic.shapes.PointSet3DDataInputDialogBox.TableModel
- getColumnClass(int) - Method in class mgui.io.domestic.shapes.PointSet3DInputDialogBox.TableModel
- getColumnClass(int) - Method in class mgui.io.domestic.shapes.PolygonSet3DInputDialogBox.TableModel
- getColumnClass(int) - Method in class mgui.io.domestic.shapes.ShapeInputDialogBox.TableModel
- getColumnClass(int) - Method in class mgui.io.domestic.shapes.ShapeModel3DOutputDialog.TableModel
- getColumnClass(int) - Method in class mgui.io.domestic.shapes.SurfaceDataInputDialogBox.TableModel
- getColumnClass(int) - Method in class mgui.io.domestic.shapes.SurfaceDataOutputDialogBox.TableModel
- getColumnClass(int) - Method in class mgui.io.domestic.shapes.SurfaceInputDialogBox.TableModel
- getColumnClass(int) - Method in class mgui.io.domestic.shapes.VectorSet3DInputDialogBox.TableModel
- getColumnClass(int) - Method in class mgui.io.domestic.variables.MatrixInDialogBox.TableModel
- getColumnCount() - Method in class mgui.interfaces.attributes.table.AttributeTableModel
- getColumnCount() - Method in class mgui.interfaces.datasources.DataTableModel
- getColumnCount() - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog.YTableModel
- getColumnCount() - Method in class mgui.interfaces.plots.sgt.SgtScatterPlotDialog.XYTableModel
- getColumnCount() - Method in class mgui.interfaces.queries.tables.QueryResultTableModel
- getColumnCount() - Method in class mgui.interfaces.shapes.InterfaceShapesPanel.VertexSelectionTableModel
- getColumnCount() - Method in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel.OverlayVolumeTableModel
- getColumnCount() - Method in interface mgui.interfaces.trees.TreeTableModel
-
Returns the number ofs availible column.
- getColumnCount() - Method in class mgui.interfaces.trees.TreeTableModelAdapter
- getColumnCount() - Method in class mgui.interfaces.variables.tables.VariableTableModel
- getColumnCount() - Method in class mgui.io.domestic.maps.NameMapOutDialogBox.TableModel
- getColumnCount() - Method in class mgui.io.domestic.shapes.PointSet2DInputDialogBox.TableModel
- getColumnCount() - Method in class mgui.io.domestic.shapes.PointSet3DDataInputDialogBox.TableModel
- getColumnCount() - Method in class mgui.io.domestic.shapes.PointSet3DInputDialogBox.TableModel
- getColumnCount() - Method in class mgui.io.domestic.shapes.PolygonSet3DInputDialogBox.TableModel
- getColumnCount() - Method in class mgui.io.domestic.shapes.ShapeInputDialogBox.TableModel
- getColumnCount() - Method in class mgui.io.domestic.shapes.ShapeModel3DOutputDialog.TableModel
- getColumnCount() - Method in class mgui.io.domestic.shapes.SurfaceDataInputDialogBox.TableModel
- getColumnCount() - Method in class mgui.io.domestic.shapes.SurfaceDataOutputDialogBox.TableModel
- getColumnCount() - Method in class mgui.io.domestic.shapes.SurfaceInputDialogBox.TableModel
- getColumnCount() - Method in class mgui.io.domestic.shapes.VectorSet3DInputDialogBox.TableModel
- getColumnCount() - Method in class mgui.io.domestic.variables.MatrixInDialogBox.TableModel
- getColumnCount() - Method in class mgui.io.foreign.caret.CaretMetricLoader.Header
- getColumnCount() - Method in class mgui.io.foreign.caret.CaretPaintLoader.Header
- getColumnMaxes(Matrix) - Static method in class mgui.geometry.util.MatrixFunctions
-
Returns the maximums of the columns of M.
- getColumnMeans(Matrix) - Static method in class mgui.geometry.util.MatrixFunctions
-
Returns the means of the columns of M.
- getColumnMins(Matrix) - Static method in class mgui.geometry.util.MatrixFunctions
-
Returns the minimums of the columns of M.
- getColumnName(int) - Method in class mgui.interfaces.attributes.table.AttributeTableModel
- getColumnName(int) - Method in class mgui.interfaces.datasources.DataTableModel
- getColumnName(int) - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog.YTableModel
- getColumnName(int) - Method in class mgui.interfaces.plots.sgt.SgtScatterPlotDialog.XYTableModel
- getColumnName(int) - Method in class mgui.interfaces.queries.tables.QueryResultTableModel
- getColumnName(int) - Method in class mgui.interfaces.shapes.InterfaceShapesPanel.VertexSelectionTableModel
- getColumnName(int) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel.OverlayVolumeTableModel
- getColumnName(int) - Method in interface mgui.interfaces.trees.TreeTableModel
-
Returns the name for column number
column. - getColumnName(int) - Method in class mgui.interfaces.trees.TreeTableModelAdapter
- getColumnName(int) - Method in class mgui.interfaces.variables.tables.VariableTableModel
- getColumnName(int) - Method in class mgui.io.domestic.maps.NameMapOutDialogBox.TableModel
- getColumnName(int) - Method in class mgui.io.domestic.shapes.PointSet2DInputDialogBox.TableModel
- getColumnName(int) - Method in class mgui.io.domestic.shapes.PointSet3DDataInputDialogBox.TableModel
- getColumnName(int) - Method in class mgui.io.domestic.shapes.PointSet3DInputDialogBox.TableModel
- getColumnName(int) - Method in class mgui.io.domestic.shapes.PolygonSet3DInputDialogBox.TableModel
- getColumnName(int) - Method in class mgui.io.domestic.shapes.ShapeInputDialogBox.TableModel
- getColumnName(int) - Method in class mgui.io.domestic.shapes.ShapeModel3DOutputDialog.TableModel
- getColumnName(int) - Method in class mgui.io.domestic.shapes.SurfaceDataInputDialogBox.TableModel
- getColumnName(int) - Method in class mgui.io.domestic.shapes.SurfaceDataOutputDialogBox.TableModel
- getColumnName(int) - Method in class mgui.io.domestic.shapes.SurfaceInputDialogBox.TableModel
- getColumnName(int) - Method in class mgui.io.domestic.shapes.VectorSet3DInputDialogBox.TableModel
- getColumnName(int) - Method in class mgui.io.domestic.variables.MatrixInDialogBox.TableModel
- getColumns() - Method in class mgui.util.JMultiLineToolTip
- getColumns(Matrix, int) - Static method in class mgui.geometry.util.MatrixFunctions
-
Returns
colas anArrayList. - getColumnsFromMetaData(String) - Method in class mgui.datasources.DataSource
-
Returns a list of columns from this DataSource's metadata, for the specified table.
- getColumnSums(Matrix) - Static method in class mgui.geometry.util.MatrixFunctions
-
Returns the sums of the columns of M.
- getComboBox() - Method in class mgui.interfaces.attributes.AttributeSelection
-
Return a combo box containing this list, and with the specified list width
- getComboBox() - Method in class mgui.interfaces.attributes.AttributeSelectionMap
-
Return a combo box containing this map, as either key values or mapped values (depending on the state of the ComboMode.
- getComboBox(int) - Method in class mgui.interfaces.attributes.AttributeSelection
-
Return a combo box containing this list, and with the specified list width
- getComboMode() - Method in class mgui.interfaces.attributes.AttributeSelectionMap
- getCommand() - Method in class mgui.pipelines.NativeProcess
-
Returns the native command for this process.
- getCommand(String[]) - Method in class mgui.pipelines.NativeProcess
- getCommandLine(String) - Static method in class mgui.build.Build
-
Constructs and returns a command line from the specified build file
- getCommandLine(String[]) - Method in class mgui.command.CommandInstance
-
Converts an array of parameters to a single space-delimited line.
- getCommandLine(String, String) - Static method in class mgui.build.Build
-
Constructs and returns a command line from the specified build file
- getComparator() - Static method in class mgui.neuro.components.cortical.AbstractCorticalRegion
- getComparisonCombo() - Static method in class mgui.interfaces.shapes.InterfaceShapesPanel.VertexSelectionTableModel
- getCompartment() - Method in class mgui.neuro.components.compartments.CompartmentEvent
- getComplementIOType() - Method in class mgui.io.FileLoader
- getComplementIOType() - Method in class mgui.io.FileWriter
- getComplementIOType() - Method in interface mgui.io.InterfaceIO
-
Returns an
InterfaceIOTypespecifying theInterfaceIOwhich performs the complementary operation to this one. - getComponent() - Method in class mgui.interfaces.neuro.NeuroComponentEvent
- getComponent() - Method in class mgui.models.networks.components.NetworkComponentEvent
- getComponents() - Method in interface mgui.models.dynamic.DynamicModel
- getComponents() - Method in class mgui.models.networks.AbstractNetwork
- getComponents() - Method in class mgui.neuro.networks.AbstractNeuralNet
- getComponents() - Method in class mgui.neuro.networks.CorticalNetwork
- getCompositeAlpha(String) - Method in class mgui.interfaces.shapes.Volume3DInt
- getCompositeOrderedColumns() - Method in class mgui.interfaces.shapes.Volume3DInt
- getCompositeRSliceImage(Volume3DInt, int) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Returns a composite image from an R-slice plane and a volume
- getCompositeRSliceImage(Volume3DInt, int, ArrayList<String>, ArrayList<WindowedColourModel>, ArrayList<Double>) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Returns a composite image from an R-slice plane, volume, and set of colour models and composite alphas.
- getCompositeRSliceImage(Volume3DInt, int, ArrayList<String>, ArrayList<WindowedColourModel>, ArrayList<Double>, ArrayList<Boolean>) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Returns a composite image from an R-slice plane, volume, and set of colour models and composite alphas.
- getCompositeSliceImage(Volume3DInt, int, int) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Returns a composite image from an S,T, or R-slice plane, determined by
section, andvolume. - getCompositeSliceImage(Volume3DInt, int, int, ArrayList<String>, ArrayList<WindowedColourModel>, ArrayList<Double>, ArrayList<Boolean>) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Returns a composite image from an image plane, volume, determined by
orientation, and set of colour models and composite alphas. - getCompoundName() - Method in class mgui.pipelines.PipelineProcess
-
Returns the compound name of this process, of the form [library_name].[compound_name].
- getConnectedDataSources() - Method in class mgui.interfaces.InterfaceWorkspace
-
Returns a list of all connected data sources associated with this workspace.
- getConnectedTreeNode() - Method in class mgui.datasources.DataSource
- getConnection() - Method in class mgui.datasources.DataSource
- getConnection() - Method in class mgui.datasources.DataSourceDriver
- getConnectionIcon() - Method in class mgui.datasources.DataSource
- getConnections() - Method in class mgui.neuro.components.AbstractNeuroComponent
- getConsoleErrorColour() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
- getConsoleFont() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
- getConsoleNormalColour() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
- getConstraint(int) - Method in class mgui.interfaces.shapes.InterfaceShape
- getConstraints() - Method in class mgui.interfaces.shapes.InterfaceShape
- getContent() - Method in class mgui.interfaces.Clipboard
-
Returns the current content, or
nullis this clipboard is empty. - getContinuousColourMaps() - Static method in class mgui.interfaces.InterfaceEnvironment
-
Returns all loaded continuous colour maps.
- getControlPointMeshes(int[][], ArrayList<SampleRay>, ScalpAndSkullModelOptions) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
-
Generates four meshes corresponding to the average control points.
- getConversionToMeter() - Method in class mgui.util.ScaledUnit
- getConvexHull(ArrayList<Point2d>) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns the convex hull of
points. - getConvexHull(ArrayList<Point3f>, String, ProgressUpdater) - Static method in class mgui.geometry.util.ConvexHullFunctions
-
Returns a
Mesh3Dwhich is the - getConvexHull(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns a new mesh which is the convex hull of the given mesh.
- getConvexHull(Mesh3D, String) - Static method in class mgui.geometry.mesh.MeshFunctions
- getConvexHull(Mesh3D, String, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns a new mesh which is the convex hull of the given mesh.
- getConvexHull(Mesh3D, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions
- getConvexHull(Shape3DInt) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
-
Returns a new mesh which is the convex hull of the given mesh.
- getConvexHull(Shape3DInt, String) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
- getConvexHull(Shape3DInt, String, ProgressUpdater) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
-
Returns a new mesh which is the convex hull of the given mesh.
- getConvexHull(Shape3DInt, ProgressUpdater) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
- getConvexHull2f(ArrayList<Point2f>) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns the convex hull of
points. - getConvexHullBlocking(Shape3DInt, String, ProgressUpdater) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
- getCoordFile() - Method in class mgui.io.foreign.caret.CaretSurfaceInOptions
- getCoordFile() - Method in class mgui.io.foreign.caret.CaretSurfaceOutDialogBox
- getCoords() - Method in class mgui.geometry.Box3D
- getCoords() - Method in class mgui.geometry.Cube3D
- getCoords() - Method in class mgui.geometry.Graph3D
- getCoords() - Method in class mgui.geometry.LineSegment3D
- getCoords() - Method in class mgui.geometry.Mesh3D
- getCoords() - Method in class mgui.geometry.Plane3D
- getCoords() - Method in class mgui.geometry.PointSet3D
- getCoords() - Method in class mgui.geometry.Polygon2D
- getCoords() - Method in class mgui.geometry.Polygon3D
-
Returns an array of n coordinates {x1,y1,z1,x2,...,zn}
- getCoords() - Method in class mgui.geometry.Rect3D
- getCoords() - Method in interface mgui.geometry.Shape
- getCoords() - Method in class mgui.geometry.Shape2D
-
Returns the coordinates of this shape as an array of length
2*n. - getCoords() - Method in class mgui.geometry.Shape3D
- getCoords() - Method in class mgui.geometry.Sphere3D
- getCoords() - Method in class mgui.geometry.Triangle3D
- getCoords() - Method in class mgui.geometry.Vector3D
- getCoordTypes() - Static method in class mgui.interfaces.graphics.util.DrawingEngine
- getCopy(BufferedImage) - Static method in class mgui.util.ImageFunctions
-
Returns a clone of
image; i.e., a new instance with the same state. - getCorner(int) - Method in class mgui.geometry.Rect2D
-
Returns the corner specified by
corner, which must be one of the constantsCNR_BL,CNR_TL,CNR_BR, orCNR_TR. - getCornerPoints(SectionSet3DInt) - Method in class mgui.morph.sections.MorphEngine
- getCorners() - Method in class mgui.geometry.Rect2D
-
Returns the four corners of this rectangle, ordered as bottom left, bottom right, top right, and top left.
- getCorticalNetwork() - Method in class mgui.io.domestic.network.CorticalNetworkMatrixLoader
- getCorticalNetwork() - Method in class mgui.io.domestic.network.CorticalNetworkXMLHandler
-
Returns the last network loaded by a call to
parse. - getCount() - Method in class mgui.morph.sections.MappedPolygon2DPath
- getCreateDatabaseSQL(String) - Method in class mgui.datasources.DataSourceDriver
-
Generates a driver-specific SQL string for creating a new database.
- getCreateDatabaseSQL(String) - Method in class mgui.datasources.postgresql.PostgreSQLDriver
- getCrossProduct(Point3f, Point3f, Point3f) - Static method in class mgui.geometry.util.GeometryFunctions
- getCrossProduct(Vector3d, Vector3d) - Static method in class mgui.geometry.util.GeometryFunctions
- getCrossProduct(Vector3f, Vector3f) - Static method in class mgui.geometry.util.GeometryFunctions
- getCrossProductDist(Point2f, Point2f, Point2f) - Static method in class mgui.geometry.util.GeometryFunctions
- getCrossProducts(Polygon2D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns a list of cross-products corresponding the the vertices of
thisPoly. - getCubicSplinePt(Point2f, Point2f, Point2f, Point2f, double) - Static method in class mgui.geometry.util.GeometryFunctions
-
Given two nodes N1 and N2 and their control points C1, C2, return a point along the cubic spline function defined by these points, at distance t (where t = 0 at N1 and t = 1 at N2) along the curve.
- getCurrent() - Method in class mgui.util.OptionList
- getCurrentAttributeDialog() - Method in class mgui.interfaces.InterfaceWorkspace
- getCurrentColumn() - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns the name of the current data column
- getCurrentColumn() - Method in class mgui.interfaces.shapes.PointSet2DInt
- getCurrentColumn() - Method in class mgui.interfaces.shapes.Shape2DInt
- getCurrentDataColumn() - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns the current VertexDataColumn.
- getCurrentDataFromSet() - Method in class mgui.interfaces.shapes.Vector3DInt
- getCurrentDir() - Static method in class mgui.interfaces.InterfaceEnvironment
-
Returns the current directory
- getCurrentDir() - Static method in class mgui.io.util.IoFunctions
- getCurrentFile() - Method in class mgui.interfaces.gui.FileButton
- getCurrentInstance() - Method in class mgui.pipelines.InterfacePipeline
- getCurrentIOType() - Method in class mgui.io.domestic.shapes.VolumeInputDialogBox
- getCurrentLineCount() - Method in class mgui.io.domestic.shapes.ShapeDataLoader
- getCurrentOptions() - Method in class mgui.io.domestic.datasources.ExportDataTableDialogBox
-
Returns the current options.
- getCurrentPanel() - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
- getCurrentPlane() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
- getCurrentPlane() - Method in class mgui.interfaces.shapes.util.Plane3DDialog
- getCurrentPlot() - Method in class mgui.interfaces.plots.InterfacePlotDisplay
- getCurrentRecord() - Method in class mgui.datasources.DataRecordSet
- getCurrentSection() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
-
Gets the current section for the section set being rendered.
- getCurrentSection() - Method in class mgui.morph.sections.MorphSections3DInt
- getCurrentSectionSet() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
-
Sets the current section set for this graphic object.
- getCurrentSectionSet() - Method in class mgui.interfaces.InterfaceDisplayPanel
- getCurrentSelection() - Method in class mgui.interfaces.InterfaceDisplayPanel
- getCurrentSet() - Method in interface mgui.models.dynamic.stats.DynamicModelStatistics
- getCurrentSet() - Method in class mgui.neuro.stats.SimpleStatistics
- getCurrentShapeAttributeDialog() - Method in class mgui.interfaces.InterfaceWorkspace
- getCurrentShapeModel() - Method in class mgui.interfaces.InterfaceDisplayPanel
- getCurrentShapeModel() - Method in class mgui.interfaces.InterfaceWorkspace
-
Returns the current shape model for this Workspace, or
nullif there is no current model. - getCurrentShapes() - Method in class mgui.interfaces.shapes.InterfaceShapesPanel
-
Determines which shapes are selected and returns them.
- getCurrentShapes() - Method in class mgui.interfaces.shapes.ShapeStatsPanel
-
Determines which shapes are selected and returns them.
- getCurrentShapeSet() - Method in class mgui.interfaces.InterfaceDisplayPanel
- getCurrentSubsection() - Method in class mgui.morph.sections.MorphSections3DInt
- getCurrentTool() - Method in class mgui.interfaces.graphics.InterfaceGraphic
- getCurrentTool() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
- getCurrentTool() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getCurrentTool() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
- getCurrentTool() - Method in class mgui.interfaces.InterfaceDisplayPanel
- getCurrentTool() - Method in class mgui.interfaces.plots.InterfacePlotDisplay
- getCurrentTool() - Method in class mgui.interfaces.tools.shapes.util.RulerDialog
-
Returns the tool that is currently using this dialog
- getCurrentTool() - Method in interface mgui.interfaces.tools.Toolable
- getCurrentTool2D() - Method in class mgui.interfaces.InterfaceDisplayPanel
- getCurrentTool3D() - Method in class mgui.interfaces.InterfaceDisplayPanel
- getCurrentToolGraph() - Method in class mgui.interfaces.InterfaceDisplayPanel
- getCurrentValue() - Method in class mgui.interfaces.graphs.AbstractGraphNode
- getCurrentVertexData() - Method in class mgui.interfaces.shapes.InterfaceShape
-
Retrieves the currently selected vertex-wise data column.
- getCurrentVertexData() - Method in class mgui.interfaces.shapes.Shape2DInt
- getCurrentVertexData() - Method in class mgui.interfaces.shapes.Vector2DInt
- getCurrentVertexData() - Method in class mgui.interfaces.shapes.Vector3DInt
- getCylinderPolygon(Polygon3D, float, int, Appearance) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
-
Returns a set of cylindrical segments which follow the path of the given polygon.
- getCylinderPolygon(Polygon3D, float, int, Appearance, List<Color>) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
-
Returns a set of cylindrical segments which follow the path of the given polygon.
- getCylinderSegment(Point3f, Point3f, float, int, Appearance) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
- getData() - Method in class mgui.interfaces.io.DataBridgeXY
- getData() - Method in interface mgui.interfaces.io.DataInputStream
-
Returns a sample of the current state of this input stream.
- getData() - Method in class mgui.interfaces.io.temp.TempBitmapDrawer
- getData() - Method in class mgui.interfaces.shapes.VertexDataColumn
-
Returns the data array underlying this column.
- getDataAsBytes() - Method in class mgui.interfaces.io.DataBridgeXY
- getDataAsBytes() - Method in interface mgui.interfaces.io.DataInputStream
-
Returns a sample of the current state of this stream as a byte array.
- getDataAsDouble() - Method in class mgui.interfaces.shapes.VertexDataColumn
-
Returns the vertex-wise data as type
double - getDatabaseNames(String) - Static method in class mgui.datasources.DataSourceDrivers
- getDatabases() - Method in class mgui.datasources.DataSourceDriver
-
If implemented, returns a list of properties the databases currently accessible through this driver.
- getDatabases(HashMap<String, HashMap<String, String>>) - Method in class mgui.datasources.DataSourceDriver
-
If implemented, returns a map of properties the databases currently accessible through this driver.
- getDatabases(HashMap<String, HashMap<String, String>>) - Method in class mgui.datasources.mysql.MySQLDriver
- getDatabases(HashMap<String, HashMap<String, String>>) - Method in class mgui.datasources.postgresql.PostgreSQLDriver
- getDataBufferType() - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
- getDataBufferType(String) - Static method in class mgui.datasources.DataTypes
- getDataBufferType(DataType) - Static method in class mgui.datasources.DataTypes
- getDataBufferTypeStr(int) - Static method in class mgui.datasources.DataTypes
- getDataDims() - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
- getDataDims() - Method in interface mgui.interfaces.shapes.volume.VolumeMetadata
-
The data dimensions: (x, y, z) or (x, y, z, t).
- getDataDims() - Method in class mgui.io.foreign.fsl.FSLVolumeMetadata
- getDataDims() - Method in class mgui.io.foreign.wunil.WunilDataset
- getDataDims() - Method in class mgui.io.standard.nifti.NiftiMetadata
- getDataElements(int, int, Object, DataBuffer) - Method in class mgui.interfaces.shapes.util.GridSampleModel
-
Returns data for a single pixel in a primitive array of type TransferType.
- getDataField() - Method in class mgui.interfaces.datasources.EditDataFieldDialogBox
- getDataFields() - Method in class mgui.io.domestic.datasources.ImportDataTableOptions
-
Returns the
DataFieldobjects defined for this options (i.e., corresponding to the specified input files). - getDataFilename() - Method in class mgui.io.standard.nifti.Nifti1Dataset
-
Get the filename for the dataset data file
- getDataFlavor() - Method in class mgui.pipelines.InterfacePipeline
- getDataFlavor() - Method in class mgui.pipelines.PipelineFork
- getDataFlavor() - Method in class mgui.pipelines.PipelineProcessInstance
- getDataFlavor() - Method in class mgui.pipelines.PipelineTask
- getDataForVector(int) - Method in class mgui.interfaces.shapes.VectorSet3DInt
- getDataForVector(String, int) - Method in class mgui.interfaces.shapes.VectorSet3DInt
- getDataFromSet() - Method in class mgui.interfaces.shapes.Vector3DInt
- getDataFromSet(String) - Method in class mgui.interfaces.shapes.Vector3DInt
- getDataItem(String) - Method in class mgui.interfaces.projects.ProjectDirectory
- getDataItems() - Method in class mgui.interfaces.projects.ProjectDirectory
-
Returns a sorted list of this directory's prespecified data items
- getDataLineColour() - Method in class mgui.interfaces.shapes.Vector2DInt
- getDataLineHeight() - Method in class mgui.interfaces.shapes.Vector2DInt
- getDataLineOffset() - Method in class mgui.interfaces.shapes.Vector2DInt
- getDataLink(String, String) - Method in class mgui.interfaces.shapes.InterfaceShape
-
DATA LINK STUFF
- getDataMaskedDoubleValues(ArrayList<MguiNumber>, MeshDataMaskOptions) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
- getDataMaskedDoubleValues(ArrayList<MguiNumber>, MeshDataMaskOptions, VertexSelection) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
- getDataMaskedIntegerValues(ArrayList<MguiNumber>, MeshDataMaskOptions) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
- getDataMaskedIntegerValues(ArrayList<MguiNumber>, MeshDataMaskOptions, VertexSelection) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
- getDataMax() - Method in class mgui.interfaces.shapes.InterfaceShape
- getDataMax() - Method in class mgui.interfaces.shapes.PointSet2DInt
- getDataMax() - Method in class mgui.interfaces.shapes.Vector2DInt
- getDataMax() - Method in class mgui.interfaces.shapes.Vector3DInt
- getDataMax() - Method in class mgui.interfaces.shapes.VertexDataColumn
-
Returns the data maximum for this column
- getDataMaxFromSet() - Method in class mgui.interfaces.shapes.Vector3DInt
- getDataMin() - Method in class mgui.interfaces.shapes.InterfaceShape
- getDataMin() - Method in class mgui.interfaces.shapes.PointSet2DInt
- getDataMin() - Method in class mgui.interfaces.shapes.Vector2DInt
- getDataMin() - Method in class mgui.interfaces.shapes.Vector3DInt
- getDataMin() - Method in class mgui.interfaces.shapes.VertexDataColumn
-
Returns the data minimum for this column
- getDataMinFromSet() - Method in class mgui.interfaces.shapes.Vector3DInt
- getDataQueries() - Method in class mgui.datasources.DataSource
-
Returns a list of the queries associated with this data source.
- getDataQuery(String) - Method in class mgui.datasources.DataSource
- getDataset() - Method in class mgui.io.foreign.wunil.WunilVolumeLoader
- getDataSize(BufferedImage) - Static method in class mgui.util.Colours
-
Returns the size, in bytes, of this image
- getDataSize(String) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
- getDataSource() - Method in class mgui.datasources.DataQuery
- getDataSource() - Method in interface mgui.datasources.DataSourceItem
- getDataSource() - Method in class mgui.datasources.DataTable
- getDataSource() - Method in class mgui.datasources.DataTableSet
- getDataSource() - Method in class mgui.datasources.LinkedDataStream
- getDataSource() - Method in class mgui.interfaces.datasources.DataSourceDialogPanel
- getDataSource() - Method in class mgui.interfaces.datasources.DataSourceListDialogPanel
- getDataSource() - Method in class mgui.interfaces.io.DataSourceEvent
- getDataSource() - Method in class mgui.io.domestic.datasources.DataSourceXMLHandler
- getDataSource() - Method in class mgui.io.domestic.datasources.ImportDataTableOptions
- getDataSource(String) - Method in class mgui.interfaces.InterfaceWorkspace
- getDataSourceDialogPanel() - Method in class mgui.datasources.DataSourceDriver
-
Returns a
DataSourceDialogPanelto specify this data source. - getDataSourceDialogPanel() - Method in class mgui.datasources.mysql.MySQLDriver
- getDataSourceDialogPanel() - Method in class mgui.datasources.postgresql.PostgreSQLDriver
- getDataSourceDriver() - Method in class mgui.datasources.DataSource
-
Returns the
DataSourceDriverassociated with this data source. - getDataSourceDriver(String) - Static method in class mgui.interfaces.InterfaceEnvironment
- getDataSourceDriverByClass(String) - Static method in class mgui.interfaces.InterfaceEnvironment
- getDataSourceDriverNames() - Static method in class mgui.interfaces.InterfaceEnvironment
-
Returns a list of the currently loaded data source drivers.
- getDataSourceFromUrl(String) - Method in class mgui.datasources.DataSourceDriver
-
Extracts a data source name from a driver-specific URL
- getDataSourceFromUrl(String) - Method in class mgui.datasources.mysql.MySQLDriver
- getDataSourceFromUrl(String) - Method in class mgui.datasources.postgresql.PostgreSQLDriver
- getDataSourceName() - Method in class mgui.interfaces.datasources.DataSourceDialogBox
- getDataSourceNode() - Method in class mgui.interfaces.InterfaceWorkspace
- getDataSources() - Static method in class mgui.interfaces.InterfaceEnvironment
-
Returns a list of the data sources loaded at init
- getDataSources() - Method in class mgui.interfaces.InterfaceWorkspace
-
Returns a list of all data sources associated with this workspace.
- getDataSources() - Method in interface mgui.models.dynamic.DynamicModelEnvironment
- getDataSources() - Method in class mgui.models.environments.SimpleEnvironment
- getDataSources() - Method in class mgui.neuro.networks.AbstractNeuralNet
- getDataSourceUrl() - Method in class mgui.interfaces.datasources.DataSourceDialogBox
- getDataStream() - Method in class mgui.interfaces.shapes.datasources.DataSourceLinkDialogBox
- getDataTable() - Method in class mgui.interfaces.datasources.EditDataTableDialog
- getDataTransferType() - Method in class mgui.interfaces.shapes.VertexDataColumn
-
Determines the data transfer type (as defined by DataBuffer) for this data column.
- getDatatype() - Method in class mgui.io.standard.nifti.Nifti1Dataset
-
Get the dataset datatype.
- getDataType() - Method in class mgui.datasources.DataField
-
Returns the data type for this field; see
Types. - getDataType() - Method in interface mgui.interfaces.shapes.volume.VolumeMetadata
-
The data type; must correspond to
DataBuffertypes. - getDataType() - Method in class mgui.interfaces.shapes.Volume3DInt
-
Returns the data type of the current column.
- getDataType() - Method in class mgui.io.foreign.fsl.FSLVolumeMetadata
- getDataType() - Method in class mgui.io.foreign.wunil.WunilDataset
- getDataType() - Method in class mgui.io.standard.nifti.NiftiMetadata
- getDataType(int) - Static method in class mgui.io.standard.nifti.util.NiftiFunctions
- getDataType(String) - Method in class mgui.interfaces.shapes.Volume3DInt
-
Returns the data type of
column. - getDataType(String) - Method in class mgui.io.domestic.shapes.VolumeOutputDialogBox
- getDataTypeList() - Static method in class mgui.datasources.DataTypes
-
Returns a sorted list of strings representing data types as specified in the setDataTypes method
- getDataTypeMap() - Method in class mgui.datasources.DataField
- getDataTypeStr() - Method in class mgui.datasources.DataField
- getDataTypeStr(int) - Method in class mgui.io.domestic.shapes.VolumeOutputDialogBox
- getDataTypeString(int) - Method in class mgui.io.standard.nifti.NiftiMetadata
- getDatumAtPoint(String, Point3f) - Method in class mgui.interfaces.shapes.Volume3DInt
-
Returns the datum from the
columnfor the voxel enclosingpoint. - getDatumAtPoint(Point3f) - Method in class mgui.interfaces.shapes.Volume3DInt
-
Returns the datum from the current column for the voxel enclosing
point. - getDatumAtVertex(int) - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns the datum from the current column at
index. - getDatumAtVertex(String, int) - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns the datum from
columnatindex. - getDatumAtVertex(String, int) - Method in class mgui.interfaces.shapes.Shape2DInt
- getDatumAtVoxel(int[]) - Method in class mgui.interfaces.shapes.Volume3DInt
-
Returns the datum from the current column at
index. - getDatumAtVoxel(int, int, int) - Method in class mgui.interfaces.shapes.Volume3DInt
-
Returns the datum from the current column at
index. - getDatumAtVoxel(String, int[]) - Method in class mgui.interfaces.shapes.Volume3DInt
-
Returns the datum from
columnatindex. - getDatumAtVoxel(String, int, int, int) - Method in class mgui.interfaces.shapes.Volume3DInt
-
Returns the datum from
columnatindex. - getDecimalFormat(int) - Static method in class mgui.numbers.NumberFunctions
- getDecimalFormat(int, boolean) - Static method in class mgui.numbers.NumberFunctions
- getDefault2() - Static method in class mgui.interfaces.maps.ContinuousColourMap
- getDefault3() - Static method in class mgui.interfaces.maps.ContinuousColourMap
- getDefaultClosedIcon() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
-
Returns the default icon, for the current laf, that is used to represent non-leaf nodes that are not expanded.
- getDefaultColourMap() - Method in class mgui.interfaces.shapes.InterfaceShape
- getDefaultEditor(Class<?>) - Method in class mgui.interfaces.attributes.table.InterfaceAttributeTable
- getDefaultIOType(InterfaceShape, int) - Static method in class mgui.io.util.IoFunctions
- getDefaultLayout() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
- getDefaultLeafIcon() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
-
Returns the default icon, for the current laf, that is used to represent leaf nodes.
- getDefaultNameMap(Mesh3DInt, String) - Method in class mgui.io.foreign.caret.CaretPaintWriter
- getDefaultOpenIcon() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
-
Returns the default icon, for the current laf, that is used to represent non-leaf nodes that are expanded.
- getDefaultOptions() - Method in class mgui.io.domestic.shapes.VolumeFileLoader
-
Returns a default set of options for loading a volume with this loader.
- getDefaultOptions() - Method in class mgui.io.foreign.caret.CaretSurfaceWriter
- getDefaultParameters() - Method in class au.edu.unsw.cse.Applet3d
- getDefaultParameters() - Method in class au.edu.unsw.cse.AppletHull
- getDefaultRenderer(Class<?>) - Method in class mgui.interfaces.attributes.table.InterfaceAttributeTable
- getDefaultShapeAttributes2D() - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
- getDefaultShapeAttributes3D() - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
- getDefaultSpatialUnit() - Static method in class mgui.interfaces.InterfaceEnvironment
- getDefaultUnit() - Method in class mgui.interfaces.shapes.ShapeModel3D
-
Returns the default spatial unit for this shape model
- getDefaultValue() - Method in class mgui.datasources.DataField
- getDefaultVolume() - Static method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
- getDegToRad(double) - Static method in class mgui.geometry.util.GeometryFunctions
-
Converts degrees to radians.
- getDelay() - Method in interface mgui.models.dynamic.DynamicModelEvent
- getDelay() - Method in class mgui.models.events.SimpleEvent
- getDelay() - Method in class mgui.models.updaters.PulseTrainUpdater.CurrentPulse
- getDelay() - Method in class mgui.neuro.components.AbstractNeuroComponent
- getDelay() - Method in class mgui.neuro.components.simple.SimpleEvent
- getDelay() - Method in class mgui.neuro.updaters.PulseTrainUpdater.CurrentPulse
- getDeltas(double[]) - Method in class mgui.models.environments.SimpleEnvironment
-
Returns the difference between this environment's current state and the given values.
- getDendrites() - Method in class mgui.neuro.components.AbstractNeuron
- getDendrites() - Method in class mgui.neuro.components.compartments.CompartmentalNeuron
- getDendrites() - Method in interface mgui.neuro.components.Neuron
- getDerivative(ArrayList<Double>, int) - Static method in class mgui.neuro.stats.SignalProcessing
-
Returns a set of data points which represent the
orderth order derivative ofcurve. - getDescription() - Method in class mgui.interfaces.shapes.util.ImageFilter
- getDescription() - Method in class mgui.io.standard.xml.svg.SVGFileFilter
- getDescription() - Method in class mgui.io.util.WildcardFileFilter
- getDiagonal() - Method in class mgui.geometry.Rect2D
- getDiagonalLength() - Method in class mgui.geometry.Rect2D
- getDialog() - Method in class mgui.interfaces.events.DialogActionEvent
- getDialog() - Method in class mgui.interfaces.io.InterfaceIOType
- getDialogBox() - Method in class mgui.interfaces.tools.dialogs.DialogTool
- getDialogBox() - Method in class mgui.interfaces.tools.shapes.ToolCreateMeshFromPolylines
- getDialogBox() - Method in class mgui.interfaces.tools.shapes.ToolCutMeshWithPlane
- getDialogBox() - Method in class mgui.interfaces.tools.shapes.ToolGetConvexHull2D
- getDialogBox() - Method in class mgui.interfaces.tools.shapes.ToolGetMeshIntersectionPolylines
- getDialogBox(JFrame) - Method in class mgui.interfaces.tools.shapes.ToolCreateMeshFromPolylines
- getDialogInstance(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Method in class mgui.interfaces.io.InterfaceIOType
-
Returns an instance of the dialog box associated with this I/O type.
- getDialogPanelInstance(VideoTask) - Method in class mgui.interfaces.graphics.video.VideoTaskType
- getDialogType() - Method in class mgui.interfaces.InterfaceDialogBox
- getDiam() - Method in class mgui.neuro.components.compartments.CompartmentalDendrite
- getDifference(MguiNumber, MguiNumber) - Static method in class mgui.numbers.NumberFunctions
- getDim(int) - Method in class mgui.util.Colour
- getDim(int) - Method in class mgui.util.Colour3f
- getDim(int) - Method in class mgui.util.Colour4f
- getDimensions() - Method in interface mgui.interfaces.math.VariableObject
-
Returns the dimensions of this object as an array of integers
- getDimensions() - Method in class mgui.interfaces.shapes.Mesh3DInt
- getDimensions() - Method in class mgui.interfaces.shapes.PointSet3DInt
- getDimensions() - Method in class mgui.interfaces.shapes.Shape2DInt
- getDimensions() - Method in class mgui.interfaces.shapes.Shape3DInt
- getDimensions() - Method in class mgui.interfaces.variables.MatrixInt
- getDimensions() - Method in class mgui.interfaces.variables.StringVectorInt
- getDimensions() - Method in class mgui.interfaces.variables.VariableInt
- getDimensions() - Method in class mgui.interfaces.variables.VectorInt
- getDims() - Method in class mgui.geometry.Grid3D
-
Returns the S, T, R, V dimensions, as an int array
- getDims() - Method in class mgui.util.Colour
- getDims() - Method in class mgui.util.Colour1f
- getDims() - Method in class mgui.util.Colour2f
- getDims() - Method in class mgui.util.Colour3f
- getDims() - Method in class mgui.util.Colour4f
- getDir() - Method in class mgui.io.domestic.maps.NameMapOutOptions
- getDirectory(String) - Static method in class mgui.io.util.IoFunctions
-
Returns the lowest directory in this path;
pathmust specify a directory. - getDirectoryName() - Method in class mgui.interfaces.projects.ProjectDirectory
- getDirFilter() - Static method in class mgui.interfaces.io.InterfaceFile
- getDirFilter() - Static method in class mgui.io.util.IoFunctions
- getDirFilter2() - Static method in class mgui.io.util.IoFunctions
- getDirs(File) - Static method in class mgui.io.util.IoFunctions
-
Returns all directories, in top-down order, found in path
- getDisappear() - Method in class au.edu.unsw.cse.VRMLState
- getDiscreteColourMaps() - Static method in class mgui.interfaces.InterfaceEnvironment
-
Returns all loaded discrete colour maps.
- getDiscreteMap(int, int) - Method in class mgui.interfaces.maps.ColourMap
-
Compile and return a discrete colour map of size
sizewithchannelsinterleaved data channels. - getDiscreteMap(int, int, boolean) - Method in class mgui.interfaces.maps.ColourMap
-
Compile and return a discrete colour map of size
sizewithchannelsinterleaved data channels. - getDiscreteMap(int, int, boolean) - Method in class mgui.interfaces.maps.ContinuousColourMap
- getDiscreteMap(int, int, boolean) - Method in class mgui.interfaces.maps.DiscreteColourMap
- getDisplay() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplayTitle
- getDisplayObjectsNode() - Method in class mgui.interfaces.graphics.InterfaceGraphic
-
Returns a tree node containing a list of objects displayable by a class of InterfaceGraphic.
- getDisplayObjectsNode() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
-
Returns a tree node containing a list of objects displayable by this class of InterfaceGraphic.
- getDisplayObjectsNode() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getDisplayObjectsNode() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
- getDisplayObjectsNode() - Method in class mgui.interfaces.tables.InterfaceDataTable
- getDisplayObjectsNode(InterfaceDisplayPanel) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
- getDisplayObjectsNode(InterfaceDisplayPanel) - Method in class mgui.interfaces.plots.InterfacePlotDisplay
- getDisplayPanel() - Method in class mgui.interfaces.DisplayPanelEvent
- getDisplayPanel() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
- getDisplayPanel() - Static method in class mgui.interfaces.InterfaceSession
-
Returns the top display panel for the current session.
- getDisplayPanel() - Method in class mgui.interfaces.InterfaceWorkspace
- getDisplayPanel() - Method in class mgui.interfaces.shapes.ShapeModel3D
- getDisplayPanel() - Method in class mgui.io.domestic.maps.DiscreteColourMapInOptions
- getDisplayPanel() - Method in class mgui.io.domestic.maps.NameMapInOptions
- getDisplayPanel() - Method in class mgui.io.domestic.maps.NameMapOutOptions
- getDisplayPanel() - Method in class mgui.io.domestic.shapes.PointSet2DInputOptions
- getDisplayPanel() - Method in class mgui.io.domestic.shapes.PointSet3DDataInputOptions
- getDisplayPanel() - Method in class mgui.io.domestic.shapes.PointSet3DInputOptions
- getDisplayPanel() - Method in class mgui.io.domestic.shapes.PolygonSet3DInputOptions
- getDisplayPanel() - Method in class mgui.io.domestic.shapes.SurfaceDataOutputOptions
- getDisplayPanel() - Method in class mgui.io.domestic.shapes.SurfaceInputOptions
- getDisplayPanel() - Method in class mgui.io.domestic.shapes.SurfaceOutputOptions
- getDisplayPanel() - Method in class mgui.io.domestic.shapes.VectorSet3DInputOptions
- getDisplayPanel() - Method in class mgui.io.domestic.variables.MatrixOutOptions
- getDisplayPanel() - Method in class mgui.io.foreign.caret.CaretMetricOptions
- getDistance() - Method in class mgui.interfaces.maps.Camera3D
- getDistance(Point2f, Point2f) - Static method in class mgui.geometry.Point2D
- getDistance(Point2f, Point2f) - Static method in class mgui.geometry.util.GeometryFunctions
- getDistance(Point3d, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Calculates the distance from
pttoplane, signed with respect to its normal. - getDistance(Point3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Calculates the absolute distance from
pttoplane - getDistanceWeightedGraphForMesh(Mesh3D) - Static method in class mgui.interfaces.graphs.util.GraphFunctions
-
Converts
meshto a weighted graph. - getDocumentBase() - Method in class au.edu.unsw.cse.FakeAppletStub
- getDotProduct(Point2f, Point2f, Point2f) - Static method in class mgui.geometry.util.GeometryFunctions
- getDoubleArray(Volume3DInt, String) - Method in class mgui.io.standard.nifti.NiftiVolumeWriter
- getDoubleFromBytes(byte[], ByteOrder) - Static method in class mgui.io.util.IoFunctions
- getDoubleParameter(String, double) - Method in class au.edu.unsw.cse.Applet3d
- getDoubleValue(byte) - Static method in class mgui.geometry.volume.VolumeFunctions
- getDoubleValueAtVertex(int) - Method in class mgui.interfaces.shapes.VertexDataColumn
-
Returns the value in this column for the vertex at
index, as adouble - getDoubleValueAtVoxel(int, int, int) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
-
Returns the value at voxel index [i, j, k]
- getDrawingEngine() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
- getDrawingEngine() - Method in class mgui.interfaces.graphs.shapes.GraphShape
- getDrawingEngine() - Method in interface mgui.interfaces.shapes.ShapePanel2D
-
Returns the drawing engine for this panel
- getDrawOnlyCurrent2D() - Method in class mgui.interfaces.shapes.SectionSet2DInt
- getDriver() - Method in class mgui.datasources.DataConnection
- getDriver(String) - Static method in class mgui.datasources.DataSourceDrivers
- getDrivers() - Static method in class mgui.datasources.DataSourceDrivers
- getDrivers() - Method in class mgui.interfaces.datasources.DataSourceDriverOptions
-
Returns a hash map of the currently loaded data source JDBC drivers.
- getDTD() - Method in class mgui.datasources.DataConnection
- getDTD() - Method in class mgui.datasources.DataField
- getDTD() - Method in class mgui.datasources.DataQuery
- getDTD() - Method in class mgui.datasources.DataSource
- getDTD() - Method in class mgui.datasources.DataTable
- getDTD() - Method in class mgui.datasources.DataTableSet
- getDTD() - Method in class mgui.geometry.Shape2D
- getDTD() - Method in class mgui.geometry.Shape3D
- getDTD() - Method in class mgui.image.util.WindowedColourModel
- getDTD() - Method in class mgui.interfaces.attributes.Attribute
- getDTD() - Method in class mgui.interfaces.attributes.AttributeList
- getDTD() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
- getDTD() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
- getDTD() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getDTD() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
- getDTD() - Method in class mgui.interfaces.graphics.video.RotateView3DTask
- getDTD() - Method in class mgui.interfaces.graphics.video.SetView3DTask
- getDTD() - Method in class mgui.interfaces.graphics.video.Video
- getDTD() - Method in class mgui.interfaces.graphics.video.VideoTask
- getDTD() - Method in class mgui.interfaces.graphics.View3D
- getDTD() - Method in class mgui.interfaces.graphs.AbstractGraphEdge
- getDTD() - Method in class mgui.interfaces.graphs.AbstractGraphNode
- getDTD() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
- getDTD() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
- getDTD() - Method in class mgui.interfaces.InterfaceDisplayPanel
- getDTD() - Method in class mgui.interfaces.InterfaceWorkspace
- getDTD() - Method in class mgui.interfaces.layouts.InterfaceLayoutWindow
- getDTD() - Method in class mgui.interfaces.layouts.LayoutItem
- getDTD() - Method in class mgui.interfaces.maps.Camera3D
- getDTD() - Method in class mgui.interfaces.maps.ColourMap
- getDTD() - Method in class mgui.interfaces.maps.Map2D
- getDTD() - Method in class mgui.interfaces.maps.Map3D
- getDTD() - Method in class mgui.interfaces.maps.NameMap
- getDTD() - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
- getDTD() - Method in class mgui.interfaces.plots.InterfacePlotDisplay
- getDTD() - Method in class mgui.interfaces.projects.InterfaceProject
- getDTD() - Method in class mgui.interfaces.projects.ProjectDirectory
- getDTD() - Method in class mgui.interfaces.projects.ProjectInstance
- getDTD() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
- getDTD() - Method in class mgui.interfaces.shapes.Shape2DInt
- getDTD() - Method in class mgui.interfaces.shapes.Shape3DInt
- getDTD() - Method in class mgui.interfaces.shapes.ShapeModel3D
- getDTD() - Method in class mgui.interfaces.shapes.VertexDataColumn
- getDTD() - Method in class mgui.interfaces.tables.InterfaceDataTable
- getDTD() - Method in class mgui.interfaces.variables.VariableInt
- getDTD() - Method in interface mgui.interfaces.xml.XMLObject
-
Returns the Data Type Declaration (DTD) for this object's XML representation
- getDTD() - Method in class mgui.io.InterfaceIOOptions
- getDTD() - Method in class mgui.neuro.imaging.camino.CaminoProject
- getDTD() - Method in class mgui.numbers.MguiBoolean
- getDTD() - Method in class mgui.numbers.MguiDouble
- getDTD() - Method in class mgui.numbers.MguiFloat
- getDTD() - Method in class mgui.numbers.MguiInteger
- getDTD() - Method in class mgui.numbers.MguiLong
- getDTD() - Method in class mgui.numbers.MguiShort
- getDTD() - Method in class mgui.pipelines.PipelineProcess
- getDTD() - Method in class mgui.pipelines.PipelineTask
- getDTD() - Method in class mgui.util.Colour
- getDuplicateFaces(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns an array of booleans where true indicates a duplicate face
- getDuplicateNodes(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns an array of booleans where true indicates a duplicate node
- getDuration() - Method in class mgui.models.updaters.PulseTrainUpdater.CurrentPulse
- getDuration() - Method in class mgui.neuro.updaters.PulseTrainUpdater.CurrentPulse
- getDynamicModelNode() - Method in class mgui.interfaces.InterfaceWorkspace
- getDynamicModels() - Method in class mgui.interfaces.InterfaceWorkspace
- getEdge(int) - Method in class mgui.geometry.mesh.MeshEdgeSet
- getEdgeAppearance(AbstractGraphEdge) - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
- getEdgeColour(AbstractGraphEdge) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt
- getEdgeColour(AbstractGraphEdge) - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
- getEdgeFactory() - Static method in class mgui.interfaces.graphs.util.GraphFunctions
- getEdgeFactory(Class<T>) - Static method in class mgui.interfaces.graphs.util.GraphFunctions
- getEdgeIndex(int, int) - Method in class mgui.geometry.mesh.MeshEdgeSet
-
Returns the index of the edge connecting
n1andn2. - getEdgeLabeller() - Static method in class mgui.interfaces.graphs.util.GraphFunctions
-
Returns a
Transformerobject which produces a label for an edge. - getEdgeLabelRenderer() - Static method in class mgui.interfaces.graphs.util.GraphFunctions
-
Returns an edge label renderer which can be turned off.
- getEdgeLengths() - Method in class mgui.geometry.Triangle3D
-
Returns edge lengths as an array ordered by: |AB|,|BC|,|AC|.
- getEdgeLengths(Mesh3D, ArrayList<MeshEdge>) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns a list of edge lengths for the given set of edges
- getEdges() - Method in class mgui.geometry.Box3D
-
Returns a set of edges from this box.
- getEdges() - Method in class mgui.geometry.mesh.MeshEdgeSet
- getEdges() - Method in class mgui.geometry.Triangle3D
-
Returns edges as an array of vectors ordered by: AB,BC,CA.
- getEdges(int, int) - Method in class mgui.geometry.mesh.MeshEdgeSet
- getEdgeScale(AbstractGraphEdge) - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
- getEdgeStroke(AbstractGraphEdge) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt
- getEdgeTri(int, int) - Method in class mgui.geometry.mesh.MeshEdgeSet
-
Returns the
ith triangle index associated with this edge. - getEdgeTypeAsString(EdgeType) - Static method in class mgui.io.domestic.graphs.xml.GraphXMLFunctions
-
Returns a string representation of
type. - getEdgeTypeForString(String) - Static method in class mgui.io.domestic.graphs.xml.GraphXMLFunctions
-
Returns the type corresponding to the string representation
type. - getEdgeVisibilityPredicate(boolean) - Static method in class mgui.interfaces.graphs.util.GraphFunctions
-
Returns a predicate object to control the visibility of edges in a graph.
- getEdgeWeightColourMap() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
- getEdgeWeightColourMap() - Method in class mgui.interfaces.shapes.graphs.Graph2DInt
- getEdgeWeightColourMap() - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
- getEditingRow() - Method in class mgui.interfaces.trees.InterfaceTreeTable
- getEditorForObject(Object) - Method in class mgui.interfaces.trees.InterfaceTreeCellEditor
- getEditStatements(DataSource, DataTable, DataTable, HashMap<String, String>) - Static method in class mgui.datasources.util.DataSourceFunctions
-
Generates a set of SQL statements which transform
old_tableintonew_table. - getEffectiveMask() - Method in class mgui.interfaces.shapes.Volume3DInt
-
Returns the union of all masks which are currently set.
- getElapsedTime() - Method in class mgui.pipelines.PipelineTask
-
Returns the time, in milliseconds, elapsed since this task was started.
- getElement() - Method in class mgui.graphs.networks.NetworkGraphEvent
- getEllipse() - Method in class mgui.interfaces.shapes.Ellipse2DInt
- getEnclosingVoxel(Point3f) - Method in class mgui.geometry.Grid3D
-
Determines the voxel which encloses point
p. - getEncoding() - Method in class mgui.datasources.postgresql.PostgreSQLDriver
-
Returns the character encoding for this database; see http://www.postgresql.org/docs/8.1/static/multibyte.html as this applies to PostgreSQL.
- getEncodingForStr(String) - Static method in class mgui.interfaces.xml.XMLFunctions
-
Returns the
XMLFormatcorresponding toformat. - getEncodingStr(XMLObject.XMLEncoding) - Static method in class mgui.interfaces.xml.XMLFunctions
-
Returns the string corresponding to
encoding. - getEnd() - Method in class au.edu.unsw.cse.PointStack
- getEndpoint(Point2f) - Method in class mgui.geometry.Radius2D
- getEndpoint(Point2f, double, double) - Static method in class mgui.geometry.util.GeometryFunctions
- getEndPoint() - Method in class mgui.geometry.Vector2D
- getEndPoint() - Method in class mgui.geometry.Vector3D
- getEndRatio() - Method in class mgui.interfaces.shapes.Vector2DInt
- getEnergy() - Method in class mgui.neuro.networks.AbstractNeuralNet
-
Returns the energy calculation for this neural network.
- getEnergy() - Method in class mgui.neuro.networks.KohonenNet
- getEnergy() - Method in class mgui.neuro.networks.PerceptronNet
- getEnvironment() - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
-
Gets the system environment for this process; returns
nullif no environment is set. - getEnvironment() - Method in interface mgui.models.dynamic.DynamicModel
- getEnvironment() - Method in interface mgui.models.dynamic.DynamicModelEnvironmentEvent
- getEnvironment() - Method in class mgui.models.environments.SimpleEnvironmentEvent
- getEnvironment() - Method in class mgui.models.networks.AbstractNetworkModel
- getEnvironment() - Method in class mgui.neuro.components.AbstractMotorNeuron
- getEnvironment() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalOutput
- getError() - Method in interface mgui.models.dynamic.stats.DynamicModelStatistics
- getError() - Method in class mgui.neuro.stats.SimpleStatistics
- getEventType() - Method in class mgui.interfaces.TabbedDisplayEvent
- getEventType() - Method in class mgui.interfaces.tools.ToolInputEvent
- getExcludeToSelection() - Method in class mgui.interfaces.shapes.ShapeModel3D
- getExclusionFilter() - Method in class mgui.interfaces.shapes.ShapeModel3D
- getExtBounds() - Method in class mgui.interfaces.shapes.Polygon2DInt
- getExtBounds() - Method in class mgui.interfaces.shapes.Rect2DInt
- getExtBounds() - Method in class mgui.interfaces.shapes.Shape2DInt
- getExtensionFilter(String) - Static method in class mgui.io.util.IoFunctions
- getExtensions() - Method in class mgui.interfaces.io.InterfaceIOType
- getExtensionsList() - Method in class mgui.io.standard.nifti.Nifti1Dataset
-
Get list of extensions and return it as nx2 array
- getFace(int) - Method in class mgui.geometry.Mesh3D
-
Returns the face at index
i. - getFace(ObjFace) - Method in class mgui.io.foreign.wavefront.WavefrontSurfaceLoader
- getFaceAngle(int, int) - Method in class mgui.geometry.Mesh3D
-
Returns the angle in face
faceat vertexi. - getFaceCount() - Method in class mgui.geometry.Mesh3D
-
Returns the number of faces in this mesh.
- getFaceIndex(int) - Method in class mgui.geometry.mesh.MeshEdgeSet
-
Returns the face index (i.e., in the source mesh) of the triangle at
tri_idx. - getFaceIndexArray() - Method in class mgui.geometry.Mesh3D
- getFaceNodes(int) - Method in class mgui.geometry.Mesh3D
-
Returns this face's vertices as
Point3fobjects. - getFaces() - Method in class mgui.geometry.Mesh3D
- getFaces() - Method in class mgui.interfaces.shapes.Box3DInt
- getFaces(int) - Method in class mgui.geometry.mesh.FaceMesh
-
Returns a list of faces associated with vertex
i. - getFaceTriangle(int) - Method in class mgui.geometry.Mesh3D
-
Returns a 3D triangle for face
i. - getFactor() - Method in class mgui.models.updaters.LinearUpdater
- getFactorX() - Method in class mgui.interfaces.plots.mgui.PlotMap2D
-
Returns the factor for the X axis
- getFactory() - Method in class mgui.interfaces.graphs.DefaultGraphEdge
- getFactory() - Method in class mgui.interfaces.graphs.DefaultGraphNode
- getFactorY() - Method in class mgui.interfaces.plots.mgui.PlotMap2D
-
Returns the factor for the Y axis
- getFailureMessage() - Method in class mgui.io.domestic.datasources.DataSourceDriverWriter
- getFailureMessage() - Method in class mgui.io.domestic.graphs.GraphFileLoader
- getFailureMessage() - Method in class mgui.io.domestic.maps.NameMapWriter
- getFailureMessage() - Method in class mgui.io.domestic.shapes.PolygonSet3DLoader
- getFailureMessage() - Method in class mgui.io.domestic.shapes.SurfaceDataFileLoader
- getFailureMessage() - Method in class mgui.io.domestic.shapes.SurfaceDataFileWriter
- getFailureMessage() - Method in class mgui.io.domestic.shapes.SurfaceFileLoader
- getFailureMessage() - Method in class mgui.io.domestic.shapes.SurfaceFileWriter
- getFailureMessage() - Method in class mgui.io.domestic.variables.MatrixFileWriter
- getFailureMessage() - Method in class mgui.io.FileLoader
-
Returns a message to indicate that loading failed.
- getFailureMessage() - Method in class mgui.io.FileWriter
- getFailureMessage() - Method in class mgui.pipelines.InterfacePipeline
- getFailureMessage() - Method in class mgui.pipelines.JavaProcess
- getFailureMessage() - Method in class mgui.pipelines.NativeProcess
- getFailureMessage() - Method in class mgui.pipelines.PipelineFork
- getFailureMessage() - Method in class mgui.pipelines.PipelineProcess
-
Returns the message to be displayed when this process has failed.
- getFailureMessage() - Method in class mgui.pipelines.PipelineProcessInstance
- getFailureMessage() - Method in class mgui.pipelines.PipelineTask
-
Message to display if this task failed
- getFarthestVertices(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns a list of size
mesh.nintegers, such that list(i) = the index of the farthest vertex j from vertex i. - getFarthestVertices(Mesh3D, ArrayList<Double>) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns a list of size
mesh.nintegers, such that list(i) = the index of the farthest vertex j from vertex i. - getFarthestVertices(Mesh3D, ArrayList<Double>, ArrayList<Integer>) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns a list of size
mesh.nintegers, such that list(i) = the index of the farthest vertex j from vertex i. - getField(int) - Method in class mgui.datasources.DataRecordSet
- getField(int) - Method in interface mgui.datasources.DataSet
- getField(String) - Method in class mgui.datasources.DataRecordSet
-
Searches for and returns the field named
name; case insensitive. - getField(String) - Method in class mgui.datasources.DataTable
- getFieldClass(int) - Method in class mgui.datasources.DataRecordSet
- getFieldClass(String) - Method in class mgui.datasources.DataRecordSet
- getFieldClass(String) - Method in class mgui.datasources.DataTable
- getFieldCount() - Method in class mgui.datasources.DataRecordSet
- getFieldCount() - Method in interface mgui.datasources.DataSet
- getFieldIndex(String) - Method in class mgui.datasources.DataRecordSet
- getFieldList() - Method in class mgui.datasources.DataTable
- getFieldName(int) - Method in class mgui.datasources.DataRecordSet
- getFields() - Method in class mgui.datasources.DataRecordSet
- getFields() - Method in class mgui.datasources.DataTable
- getFieldVal(int) - Method in class mgui.datasources.DataRecordSet
- getFieldVal(String) - Method in class mgui.datasources.DataRecordSet
-
Returns the current value of this field
- getFile() - Method in class mgui.datasources.DataConnection
- getFile() - Method in class mgui.interfaces.io.InterfaceFile
- getFile() - Method in class mgui.io.FileLoader
-
Returns the current data file for this loader.
- getFile() - Method in class mgui.io.FileWriter
- getFile() - Method in class mgui.io.standard.nifti.NiftiVolumeLoader
- getFileChooser() - Method in class mgui.io.DefaultIOOptions
- getFileChooser() - Method in class mgui.io.domestic.datasources.ExportDataTableOptions
- getFileChooser() - Method in class mgui.io.domestic.datasources.ImportDataTableOptions
- getFileChooser() - Method in class mgui.io.domestic.graphs.GraphInputOptions
- getFileChooser() - Method in class mgui.io.domestic.graphs.GraphOutputOptions
- getFileChooser() - Method in class mgui.io.domestic.maps.DiscreteColourMapInOptions
- getFileChooser() - Method in class mgui.io.domestic.maps.DiscreteColourMapOutOptions
- getFileChooser() - Method in class mgui.io.domestic.maps.NameMapInOptions
- getFileChooser() - Method in class mgui.io.domestic.maps.NameMapOutOptions
- getFileChooser() - Method in class mgui.io.domestic.network.CorticalNetworkMatrixInOptions
- getFileChooser() - Method in class mgui.io.domestic.pipelines.PipelineInputOptions
- getFileChooser() - Method in class mgui.io.domestic.pipelines.PipelineOutputOptions
- getFileChooser() - Method in class mgui.io.domestic.shapes.Graph3DOutputOptions
- getFileChooser() - Method in class mgui.io.domestic.shapes.PointSet2DInputOptions
- getFileChooser() - Method in class mgui.io.domestic.shapes.PointSet3DDataInputOptions
- getFileChooser() - Method in class mgui.io.domestic.shapes.PointSet3DInputOptions
- getFileChooser() - Method in class mgui.io.domestic.shapes.PolygonSet3DInputOptions
- getFileChooser() - Method in class mgui.io.domestic.shapes.ShapeDataInputOptions
- getFileChooser() - Method in class mgui.io.domestic.shapes.ShapeInputOptions
- getFileChooser() - Method in class mgui.io.domestic.shapes.ShapeModel3DInputOptions
- getFileChooser() - Method in class mgui.io.domestic.shapes.ShapeOutputOptions
- getFileChooser() - Method in class mgui.io.domestic.shapes.SurfaceDataInputOptions
- getFileChooser() - Method in class mgui.io.domestic.shapes.SurfaceDataOutputOptions
- getFileChooser() - Method in class mgui.io.domestic.shapes.SurfaceInputOptions
- getFileChooser() - Method in class mgui.io.domestic.shapes.SurfaceOutputOptions
- getFileChooser() - Method in class mgui.io.domestic.shapes.VectorSet3DInputOptions
- getFileChooser() - Method in class mgui.io.domestic.shapes.VolumeInputOptions
- getFileChooser() - Method in class mgui.io.domestic.shapes.VolumeOutputOptions
- getFileChooser() - Method in class mgui.io.domestic.variables.MatrixInOptions
- getFileChooser() - Method in class mgui.io.domestic.variables.MatrixOutOptions
- getFileChooser() - Method in class mgui.io.domestic.variables.StringVectorInOptions
- getFileChooser() - Method in class mgui.io.domestic.videos.ImageStackVideoOptions
- getFileChooser() - Method in class mgui.io.domestic.views.View3DInputOptions
- getFileChooser() - Method in class mgui.io.domestic.views.View3DOutputOptions
- getFileChooser() - Method in class mgui.io.foreign.caret.CaretAreaColourOutputOptions
- getFileChooser() - Method in class mgui.io.foreign.caret.CaretMetricOptions
- getFileChooser() - Method in class mgui.io.foreign.caret.CaretSurfaceOutOptions
- getFileChooser() - Method in class mgui.io.foreign.minc.MincSurfaceDataOutOptions
- getFileChooser() - Method in class mgui.io.foreign.pajek.PajekGraphInputOptions
- getFileChooser() - Method in class mgui.io.InterfaceIOOptions
-
Returns a file chooser appropriate for this options instance
- getFileChooser() - Method in class mgui.io.standard.xml.x3d.Vector3DInputOptions
- getFileChooser() - Method in class mgui.io.standard.xml.XMLOutputOptions
- getFileChooser(File) - Method in class mgui.io.DefaultIOOptions
- getFileChooser(File) - Method in class mgui.io.domestic.datasources.ExportDataTableOptions
- getFileChooser(File) - Method in class mgui.io.domestic.datasources.ImportDataTableOptions
- getFileChooser(File) - Method in class mgui.io.domestic.graphs.GraphInputOptions
- getFileChooser(File) - Method in class mgui.io.domestic.graphs.GraphOutputOptions
- getFileChooser(File) - Method in class mgui.io.domestic.maps.DiscreteColourMapInOptions
- getFileChooser(File) - Method in class mgui.io.domestic.maps.DiscreteColourMapOutOptions
- getFileChooser(File) - Method in class mgui.io.domestic.maps.NameMapInOptions
- getFileChooser(File) - Method in class mgui.io.domestic.maps.NameMapOutOptions
- getFileChooser(File) - Method in class mgui.io.domestic.network.CorticalNetworkMatrixInOptions
- getFileChooser(File) - Method in class mgui.io.domestic.pipelines.PipelineInputOptions
- getFileChooser(File) - Method in class mgui.io.domestic.pipelines.PipelineOutputOptions
- getFileChooser(File) - Method in class mgui.io.domestic.shapes.Graph3DOutputOptions
- getFileChooser(File) - Method in class mgui.io.domestic.shapes.PointSet2DInputOptions
- getFileChooser(File) - Method in class mgui.io.domestic.shapes.PointSet3DDataInputOptions
- getFileChooser(File) - Method in class mgui.io.domestic.shapes.PointSet3DInputOptions
- getFileChooser(File) - Method in class mgui.io.domestic.shapes.PolygonSet3DInputOptions
- getFileChooser(File) - Method in class mgui.io.domestic.shapes.ShapeDataInputOptions
- getFileChooser(File) - Method in class mgui.io.domestic.shapes.ShapeInputOptions
- getFileChooser(File) - Method in class mgui.io.domestic.shapes.ShapeModel3DInputOptions
- getFileChooser(File) - Method in class mgui.io.domestic.shapes.ShapeModel3DOutputOptions
- getFileChooser(File) - Method in class mgui.io.domestic.shapes.ShapeOutputOptions
- getFileChooser(File) - Method in class mgui.io.domestic.shapes.SurfaceDataInputOptions
- getFileChooser(File) - Method in class mgui.io.domestic.shapes.SurfaceDataOutputOptions
- getFileChooser(File) - Method in class mgui.io.domestic.shapes.SurfaceInputOptions
- getFileChooser(File) - Method in class mgui.io.domestic.shapes.SurfaceOutputOptions
- getFileChooser(File) - Method in class mgui.io.domestic.shapes.VectorSet3DInputOptions
- getFileChooser(File) - Method in class mgui.io.domestic.shapes.VolumeInputOptions
- getFileChooser(File) - Method in class mgui.io.domestic.shapes.VolumeOutputOptions
- getFileChooser(File) - Method in class mgui.io.domestic.variables.MatrixInOptions
- getFileChooser(File) - Method in class mgui.io.domestic.variables.MatrixOutOptions
- getFileChooser(File) - Method in class mgui.io.domestic.variables.StringVectorInOptions
- getFileChooser(File) - Method in class mgui.io.domestic.videos.ImageStackVideoOptions
- getFileChooser(File) - Method in class mgui.io.domestic.views.View3DInputOptions
- getFileChooser(File) - Method in class mgui.io.domestic.views.View3DOutputOptions
- getFileChooser(File) - Method in class mgui.io.domestic.WorkspaceOutputOptions
- getFileChooser(File) - Method in class mgui.io.foreign.caret.CaretAreaColourOutputOptions
- getFileChooser(File) - Method in class mgui.io.foreign.caret.CaretMetricOptions
- getFileChooser(File) - Method in class mgui.io.foreign.caret.CaretSurfaceInOptions
- getFileChooser(File) - Method in class mgui.io.foreign.caret.CaretSurfaceOutOptions
- getFileChooser(File) - Method in class mgui.io.foreign.minc.MincSurfaceDataOutOptions
- getFileChooser(File) - Method in class mgui.io.foreign.pajek.PajekGraphInputOptions
- getFileChooser(File) - Method in class mgui.io.InterfaceIOOptions
-
Returns a file chooser appropriate for this options instance
- getFileChooser(File) - Method in class mgui.io.standard.xml.x3d.Vector3DInputOptions
- getFileChooser(File) - Method in class mgui.io.standard.xml.XMLOutputOptions
- getFileChooserFilter(ArrayList<String>, String) - Static method in class mgui.io.util.IoFunctions
- getFileCount(File) - Static method in class mgui.io.util.IoFunctions
-
Counts the number of files contained in
directory(recursive). - getFileCount(File, boolean) - Static method in class mgui.io.util.IoFunctions
-
Counts the number of files contained in
directory. - getFileData() - Method in class mgui.io.foreign.vol.VolFileLoader
- getFileFilter() - Method in class mgui.interfaces.io.InterfaceFile
- getFileLoader() - Method in class mgui.datasources.DataSourceDriver
- getFileLoader() - Method in interface mgui.interfaces.io.PersistentObject
-
Returns an instance of the file loader associated with this persistent object.
- getFileLoader() - Method in class mgui.interfaces.projects.ProjectDataItem
- getFileLoader() - Method in class mgui.interfaces.shapes.InterfaceShape
- getFilenameForInstance(String) - Method in class mgui.interfaces.projects.ProjectDataItem
-
Constructs a filename from the given parameters and the file name form.
- getFilenameForInstance(String, Integer) - Method in class mgui.interfaces.projects.ProjectDataItem
-
Constructs a filename from the given parameters and the file name form.
- getFilenameForm() - Method in class mgui.interfaces.projects.ProjectDataItem
- getFiles() - Method in class mgui.io.DefaultIOOptions
- getFiles() - Method in class mgui.io.domestic.datasources.ExportDataTableOptions
- getFiles() - Method in class mgui.io.domestic.datasources.ImportDataTableOptions
- getFiles() - Method in class mgui.io.domestic.graphs.GraphInputOptions
- getFiles() - Method in class mgui.io.domestic.graphs.GraphOutputOptions
- getFiles() - Method in class mgui.io.domestic.maps.DiscreteColourMapInOptions
- getFiles() - Method in class mgui.io.domestic.maps.DiscreteColourMapOutOptions
- getFiles() - Method in class mgui.io.domestic.maps.NameMapInOptions
- getFiles() - Method in class mgui.io.domestic.maps.NameMapOutOptions
- getFiles() - Method in class mgui.io.domestic.network.CorticalNetworkMatrixInOptions
- getFiles() - Method in class mgui.io.domestic.pipelines.PipelineInputOptions
- getFiles() - Method in class mgui.io.domestic.pipelines.PipelineOutputOptions
- getFiles() - Method in class mgui.io.domestic.shapes.Graph3DOutputOptions
- getFiles() - Method in class mgui.io.domestic.shapes.PointSet2DInputOptions
- getFiles() - Method in class mgui.io.domestic.shapes.PointSet3DDataInputOptions
- getFiles() - Method in class mgui.io.domestic.shapes.PointSet3DInputOptions
- getFiles() - Method in class mgui.io.domestic.shapes.PolygonSet3DInputOptions
- getFiles() - Method in class mgui.io.domestic.shapes.ShapeDataInputOptions
- getFiles() - Method in class mgui.io.domestic.shapes.ShapeInputOptions
- getFiles() - Method in class mgui.io.domestic.shapes.ShapeModel3DInputOptions
- getFiles() - Method in class mgui.io.domestic.shapes.ShapeOutputOptions
- getFiles() - Method in class mgui.io.domestic.shapes.SurfaceDataInputOptions
- getFiles() - Method in class mgui.io.domestic.shapes.SurfaceDataOutputOptions
- getFiles() - Method in class mgui.io.domestic.shapes.SurfaceInputOptions
- getFiles() - Method in class mgui.io.domestic.shapes.SurfaceOutputOptions
- getFiles() - Method in class mgui.io.domestic.shapes.VectorSet3DInputOptions
- getFiles() - Method in class mgui.io.domestic.shapes.VolumeInputOptions
- getFiles() - Method in class mgui.io.domestic.shapes.VolumeOutputOptions
- getFiles() - Method in class mgui.io.domestic.variables.MatrixInOptions
- getFiles() - Method in class mgui.io.domestic.variables.MatrixOutOptions
- getFiles() - Method in class mgui.io.domestic.variables.StringVectorInOptions
- getFiles() - Method in class mgui.io.domestic.videos.ImageStackVideoOptions
- getFiles() - Method in class mgui.io.domestic.views.View3DInputOptions
- getFiles() - Method in class mgui.io.domestic.views.View3DOutputOptions
- getFiles() - Method in class mgui.io.foreign.caret.CaretAreaColourOutputOptions
- getFiles() - Method in class mgui.io.foreign.caret.CaretMetricOptions
- getFiles() - Method in class mgui.io.foreign.minc.MincSurfaceDataInOptions
- getFiles() - Method in class mgui.io.InterfaceIOOptions
-
Returns the list of files associated with this options instance
- getFiles() - Method in class mgui.io.standard.xml.x3d.Vector3DInputOptions
- getFiles() - Method in class mgui.io.standard.xml.XMLOutputOptions
- getFiles(String, String) - Static method in class mgui.io.util.IoFunctions
- getFileWriter() - Method in class mgui.datasources.DataSourceDriver
- getFileWriter() - Method in interface mgui.interfaces.io.PersistentObject
-
Returns an instance of the file writer associated with this persistent object.
- getFileWriter() - Method in class mgui.interfaces.projects.ProjectDataItem
- getFileWriter() - Method in class mgui.interfaces.shapes.InterfaceShape
- getFillColour() - Method in class mgui.interfaces.shapes.Mesh3DInt
-
Returns this shape's fill colour
- getFilledArrow(double) - Static method in class mgui.interfaces.shapes.util.Point2DShape
-
Returns a basic filled arrow shape, oriented to the right (angle == 0).
- getFilledCircle(double) - Static method in class mgui.interfaces.shapes.util.Point2DShape
- getFilter() - Method in class mgui.interfaces.io.InterfaceIOType
- getFilter(String[], String) - Static method in class mgui.interfaces.io.InterfaceFile
- getFilteredByList(ArrayList<Comparable>, String) - Method in class mgui.datasources.DataTable
-
Enumerates the indices of records in this table where
filter_fieldmatches an element inlist. - getFilteredSectionSet(SectionSet3DInt) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
-
Returns a section set which is sectSet, filtered by this selection set
- getFilteredSectionSet(SectionSet3DInt) - Method in class mgui.interfaces.shapes.Shape2DSelectionSet
- getFilteredShapeSet2D(ShapeSet2DInt) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
-
Return a shape2D set which is thisSet, filtered by this selection set.
- getFilteredShapeSet3D(ShapeSet3DInt) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
-
Return a shape3D set which is thisSet, filtered by this selection set.
- getFinalWidth() - Method in class mgui.interfaces.gui.InterfaceComboBoxBak
- getFiringRate() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalConnection
- getFiringRate() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
- getFiringRate() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegionEvent
- getFirstFrame() - Method in interface au.edu.unsw.cse.Object3d
- getFirstFrame() - Method in class au.edu.unsw.cse.Object3dAdaptor
- getFirstFrame() - Method in class au.edu.unsw.cse.Point3dObject3d
- getFirstSection() - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getFirstSection() - Method in class mgui.interfaces.shapes.util.SectionSetIterator
- getFirstSection() - Method in class mgui.morph.sections.MorphSections3DInt
- getFirstSection() - Method in class mgui.morph.sections.util.MorphSectionSetIterator
- getFirstVertex() - Method in class mgui.geometry.Polygon2D
- getFixedWidth() - Method in class mgui.interfaces.gui.InterfaceComboBoxBak
- getFixedWidth() - Method in class mgui.util.JMultiLineToolTip
- getFlipNormals() - Method in class mgui.interfaces.shapes.Mesh3DInt
- getFloat() - Method in class mgui.numbers.MguiFloat
-
Get this value as a float.
- getFloatFromBytes(byte[], ByteOrder) - Static method in class mgui.io.util.IoFunctions
- getFont() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
-
Gets the font of this component.
- getFont() - Method in class mgui.interfaces.shapes.Text2DInt
- getForkMenu() - Method in class mgui.interfaces.pipelines.trees.PipelineTree
- getFormat() - Method in class mgui.interfaces.shapes.volume.Volume3DTexture
- getFormat() - Method in class mgui.io.foreign.freesurfer.FreesurferVertexDataInOptions
- getFractalSphereMesh(Point3f, float, int) - Static method in class mgui.geometry.mesh.MeshFunctions
- getFrame() - Static method in class mgui.interfaces.InterfaceEnvironment
- getFrameNo() - Method in class au.edu.unsw.cse.View3d
-
get the frame no
- getFriendlyName(String) - Method in class mgui.datasources.DataSourceDriver
-
Converts
stringto a "friendly" string; i.e., replacing all illegal characters with acceptable ones. - getFrom() - Method in class mgui.interfaces.graphs.AbstractGraphEdge
- getFromDataBufferType(int) - Static method in class mgui.datasources.DataTypes
- getFullName() - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns a full name of this shape, including its parent model and shape sets, separated by dots.
- getFullName() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
- getFullName() - Method in class mgui.interfaces.shapes.Shape3DInt
- getFullName() - Method in interface mgui.interfaces.shapes.ShapeSet
- getFurthestChild(K3DBinaryTree.K3DNode, Point3f) - Method in class mgui.geometry.util.K3DBinaryTree
- getFWHMtoSigma(double) - Static method in class mgui.stats.StatFunctions
-
Converts full-width at half max to sigma (standard deviations)
- getG_Ca() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getG_K() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getG_L() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getG_Na() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getGaussian(double, double, double) - Static method in class mgui.stats.StatFunctions
-
Returns the normalized probability of
xgiven the normal probability distribution defined bymu(mean) andsigma(st dev). - getGaussian2(double, double, double) - Static method in class mgui.stats.StatFunctions
-
Returns the normalized probability of
xgiven the normal probability distribution defined bymu(mean) andsigma(st dev). - getGaussianSmoothedValue(Volume3DInt, int[], int, Vector3f, float, float, float) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Computes a value for
voxelwhich is the weighted average of a Gaussian sampling of its neighbouring voxels, where the Gaussian is defined by a normal vector, its corresponding plane, and the sigma parameterssigma_normalandsigma_tangent. - getGenericInstance(String, Class<T>) - Static method in class mgui.interfaces.attributes.Attribute
- getGenericType() - Method in class mgui.collections.ReifiedArrayList
- getGeomDims() - Method in class mgui.geometry.Grid3D
-
Returns the geometric dimensions of this grid.
- getGeomDims() - Method in interface mgui.interfaces.shapes.volume.VolumeMetadata
-
The geometric dimensions of the volume (x, y, z) or (S, T, R) in texture coordinates.
- getGeomDims() - Method in class mgui.io.foreign.fsl.FSLVolumeMetadata
- getGeomDims() - Method in class mgui.io.foreign.wunil.WunilDataset
- getGeomDims() - Method in class mgui.io.standard.nifti.NiftiMetadata
- getGeometricCenter() - Method in class mgui.interfaces.shapes.Shape3DInt
- getGeometricCenter(ArrayList<Point3f>) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns the geometric center of this list of points, which is the center of its bounding box.
- getGeometricCenter(Shape3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns the geometric center of this list of points, which is the center of its bounding box.
- getGeometry() - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns the Shape associated with this object
- getGeometry() - Method in class mgui.interfaces.shapes.Shape2DInt
- getGeometry() - Method in class mgui.interfaces.shapes.Shape3DInt
- getGeometryInstance() - Method in class mgui.interfaces.shapes.Box3DInt
- getGeometryInstance() - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
- getGeometryInstance() - Method in class mgui.interfaces.shapes.Image2DInt
- getGeometryInstance() - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns an instance of this
InterfaceShape's geometry class. - getGeometryInstance() - Method in class mgui.interfaces.shapes.Mesh3DInt
- getGeometryInstance() - Method in class mgui.interfaces.shapes.PointSet3DInt
- getGeometryInstance() - Method in class mgui.interfaces.shapes.Polygon3DInt
- getGeometryInstance() - Method in class mgui.interfaces.shapes.PolygonSet3DInt
- getGeometryInstance() - Method in class mgui.interfaces.shapes.Rect3DInt
- getGeometryInstance() - Method in class mgui.interfaces.shapes.SectionSet2DInt
- getGeometryInstance() - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getGeometryInstance() - Method in class mgui.interfaces.shapes.Shape2DInt
- getGeometryInstance() - Method in class mgui.interfaces.shapes.Shape2DSelectionSet
- getGeometryInstance() - Method in class mgui.interfaces.shapes.Shape3DInt
- getGeometryInstance() - Method in class mgui.interfaces.shapes.Volume3DInt
- getGeometryInstance() - Method in class mgui.morph.sections.RadialRep2DInt
- getGeomR() - Method in class mgui.geometry.Grid3D
-
Returns the geometric dimension in the R-axis.
- getGeomS() - Method in class mgui.geometry.Grid3D
-
Returns the geometric dimension in the S-axis.
- getGeomT() - Method in class mgui.geometry.Grid3D
-
Returns the geometric dimension in the T-axis.
- getGlobeSphereMesh(Point3f, float, int) - Static method in class mgui.geometry.mesh.MeshFunctions
- getGraph() - Method in class mgui.geometry.Graph2D
- getGraph() - Method in class mgui.geometry.Graph3D
- getGraph() - Method in interface mgui.interfaces.graphs.GraphableObject
- getGraph() - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
- getGraph() - Method in class mgui.models.networks.AbstractNetwork
- getGraph() - Method in class mgui.models.networks.AbstractNetworkModel
- getGraph() - Method in class mgui.neuro.networks.AbstractNeuralNet
-
Constructs and returns a directed graph from the model components and their connections.
- getGraph() - Method in class mgui.neuro.networks.CorticalNetwork
- getGraph(int) - Method in class mgui.io.domestic.graphs.GraphOutputOptions
- getGraph(int) - Method in class mgui.io.domestic.shapes.Graph3DOutputOptions
- getGraph(String) - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout
- getGraph(String) - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
-
Returns the graph for the given layer.
- getGraphEdgeInstance(Attributes) - Static method in class mgui.io.domestic.graphs.xml.GraphXMLFunctions
-
Returns a new instance of
AbstractGraphEdge, from the given SAX attributes. - getGraphic() - Method in class mgui.interfaces.graphics.GraphicEvent
- getGraphicsWindows() - Static method in class mgui.interfaces.InterfaceEnvironment
-
Deprecated.
- getGraphInstance(Attributes) - Static method in class mgui.io.domestic.graphs.xml.GraphXMLFunctions
-
Returns a new instance of
InterfaceAbstractGraph, from the given SAX attributes. - getGraphLayoutInstance() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
- getGraphLayoutInstance() - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
- getGraphNode() - Method in class mgui.interfaces.InterfaceWorkspace
- getGraphNodeInstance(Attributes) - Static method in class mgui.io.domestic.graphs.xml.GraphXMLFunctions
-
Returns a new instance of
AbstractGraphNode, from the given SAX attributes. - getGraphs() - Method in class mgui.interfaces.InterfaceWorkspace
- getGreen() - Method in class mgui.util.Colour
- getGreen() - Method in class mgui.util.Colour1f
- getGreen() - Method in class mgui.util.Colour2f
- getGreen() - Method in class mgui.util.Colour3f
- getGreen() - Method in class mgui.util.Colour4f
- getGreen(int) - Method in class mgui.image.util.WindowedColourModel
- getGreen(Object) - Method in class mgui.image.util.WindowedColourModel
- getGreenIndex() - Method in class mgui.image.util.WindowedColourModel
- getGreyScale() - Static method in class mgui.interfaces.maps.ContinuousColourMap
- getGrid() - Method in class mgui.interfaces.shapes.Volume3DInt
-
Returns the Grid3D associated with this volume.
- getGridBasisTransform() - Method in class mgui.geometry.Grid3D
-
Finds transform using the origin (center point of first voxel), rather than the base point.
- getGridCoordinate(Point3f) - Method in class mgui.geometry.Grid3D
-
Determines the grid coordinate of point
p, expressed in world coordinates. - getGridFromSpecs() - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
- getGroomedPolygon(Polygon2DInt, float, boolean, float, boolean, float) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
- getGzTempFile(String) - Method in class mgui.io.standard.nifti.Nifti1Dataset
- getHasAlpha() - Method in class mgui.image.util.WindowedColourModel
- getHasAlpha() - Method in class mgui.interfaces.plots.mgui.MatrixImagePlot
-
Query the current alpha state
- getHeader() - Method in class mgui.io.foreign.caret.CaretMetricLoader
- getHeader() - Method in class mgui.io.foreign.caret.CaretPaintLoader
- getHeaderFilename() - Method in class mgui.io.standard.nifti.Nifti1Dataset
-
Get the filename for the dataset header file
- getHeight() - Method in class mgui.geometry.Rect2D
-
Returns the width of this rectangle, which is a distance along the edge perpendicular to
rotation. - getHeight() - Method in class mgui.geometry.Rect3D
- getHeight() - Method in class mgui.interfaces.layouts.CategoryLayout
- getHeight() - Method in class mgui.interfaces.layouts.LayoutItem
-
Returns the height of this item, in document units.
- getHelpParameter() - Method in class mgui.pipelines.PipelineProcess
-
Gets the parameter which is used to show a help message for this process.
- getHighlightCurrent2D() - Method in class mgui.interfaces.shapes.SectionSet2DInt
- getHighLimit() - Method in class mgui.models.dynamic.functions.HardLimitFunction
- getHistogram(ArrayList<MguiNumber>, int) - Static method in class mgui.stats.StatFunctions
-
Constructs a histogram from the list
d, comprised ofbinsbins. - getHistogram(ArrayList<MguiNumber>, int, double, double) - Static method in class mgui.stats.StatFunctions
-
Constructs a histogram from the list
d, comprised ofbinsbins. - getHistogram(ArrayList<MguiNumber>, int, double, double, boolean) - Static method in class mgui.stats.StatFunctions
-
Constructs a histogram from the list
d, comprised ofbinsbins. - getHistogram(Volume3DInt, int) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Returns a histogram for the current column of
volume. - getHistogram(Volume3DInt, int, int, double, double) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Returns a histogram for the current column of
volume. - getHistogram(Volume3DInt, String, int, int, double, double) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Returns a histogram for the vertex column
columnofvolume. - getHistogramBlocking(Volume3DInt, int, int, double, double) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
-
Produces a histogram for the currently selected column of
volume. - getHolmBonferroniCorrected(ArrayList<MguiNumber>) - Static method in class mgui.stats.StatFunctions
-
Returns p-values corrected for family-wise error, using the Holm-Bonferroni method.
- getI_delta() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getIcon() - Static method in class mgui.datasources.DataSource
- getIcon() - Static method in class mgui.datasources.DataTable
- getIcon() - Static method in class mgui.datasources.LinkedDataStream
- getIcon() - Method in class mgui.interfaces.shapes.Shape3DInt
- getIcon() - Static method in class mgui.interfaces.shapes.VertexDataColumn
- getIcon() - Method in class mgui.pipelines.PipelineFork
- getIcon() - Static method in class mgui.pipelines.PipelineProcess
- getIcon(String) - Static method in class mgui.interfaces.projects.ProjectInstance
- getIconSize() - Method in class mgui.interfaces.gui.InterfaceComboBox
- getIconTypes() - Static method in class mgui.interfaces.projects.ProjectInstance
- getId() - Method in class mgui.io.foreign.vol.VolFileLoader
-
Returns the ID string for the volume file
- getID() - Method in class mgui.interfaces.shapes.InterfaceShape
- getID() - Method in interface mgui.models.dynamic.DynamicModelComponent
- getID() - Method in class mgui.neuro.components.AbstractNeuroComponent
- getID() - Method in class mgui.util.IDFactory
- getImage() - Method in class mgui.interfaces.attributes.AttributeDialogBox
- getImage() - Method in class mgui.interfaces.frames.SessionFrame
- getImage() - Method in class mgui.interfaces.shapes.Image2DInt
- getImage() - Method in class mgui.interfaces.startup.InitFrame
- getImageComponent() - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
- getImageDataType() - Method in class mgui.io.standard.imaging.ImageFileLoader
- getImageHeight() - Method in class mgui.io.standard.imaging.ImageFileLoader
- getImageWidth() - Method in class mgui.io.standard.imaging.ImageFileLoader
- getIncludeFields() - Method in class mgui.io.domestic.datasources.ImportDataTableOptions
-
Returns a list of include values; i.e., whether to include the corresponding field in the import.
- getIndex() - Method in class mgui.interfaces.shapes.queries.QueryShapeVertex
- getIndex() - Method in class mgui.interfaces.shapes.util.ShapeVertexObject
- getIndex() - Method in interface mgui.models.dynamic.DynamicModelEnvironmentSensor
- getIndex() - Method in interface mgui.models.dynamic.DynamicModelOutputEvent
- getIndex() - Method in class mgui.models.environments.AbstractEnvironmentDataSource
- getIndex() - Method in class mgui.models.updaters.PulseTrainUpdater.CurrentPulse
- getIndex() - Method in class mgui.morph.sections.AttributeNode2D
- getIndex() - Method in class mgui.neuro.components.cortical.AbstractCorticalInput
- getIndex() - Method in class mgui.neuro.components.cortical.AbstractCorticalOutput
- getIndex() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalOutput
- getIndex() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalOutputEvent
- getIndex() - Method in class mgui.neuro.components.simple.SimpleMotorNeuron
- getIndex() - Method in class mgui.neuro.components.simple.SimpleMotorNeuronEvent
- getIndex() - Method in class mgui.neuro.components.simple.SimpleSensoryNeuron
- getIndex() - Method in class mgui.neuro.updaters.PulseTrainUpdater.CurrentPulse
- getIndex(String) - Method in class mgui.datasources.DataTable
- getIndexAsVoxel(int) - Method in class mgui.geometry.Grid3D
-
Returns a voxel as an integer array of the form {s, t, r}, from the absolute index
index. - getIndexes() - Method in class mgui.datasources.DataTable
- getIndexMap() - Method in class mgui.interfaces.maps.DiscreteColourMap
-
Returns a mapping from the index values of this discrete colour map to the byte map indices return by DiscreteColourMap.getDiscreteMap(int,int,boolean).
- getIndexOf(InterfaceShape) - Method in class mgui.interfaces.shapes.SectionSet3DInt
-
Returns the index of
section_setin this set. - getIndexOf(InterfaceShape) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
-
Returns the index of
shapein this set. - getIndexOf(InterfaceShape) - Method in interface mgui.interfaces.shapes.ShapeSet
-
Returns the index of
shapein this set. - getIndexOf(InterfaceShape) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
-
Returns the index of
shapein this set. - getIndexOf(InterfaceShape) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
-
Returns the index of
shapein this set. - getIndexOfChild(Object, Object) - Method in class mgui.interfaces.trees.AbstractTreeTableModel
- getIndices() - Method in class mgui.interfaces.maps.DiscreteColourMap
- getIndices() - Method in class mgui.interfaces.maps.NameMap
- getInheritedAttribute(String) - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns the (possibly inherited) named attribute.
- getInheritedAttributes() - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns an AttributeList object reflecting the current attributes for this shape, whether local or inherited (i.e., overridden by this shape's parent).
- getInheritedAttributeValue(String) - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns the (possibly inherited) value of the named attribute.
- getInheritingAttribute(Attribute<?>) - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
- getInheritingAttribute(Attribute<?>) - Method in class mgui.interfaces.shapes.Mesh3DInt
- getInheritingAttribute(Attribute<?>) - Method in class mgui.interfaces.shapes.Shape3DInt
-
Returns the 2D attribute inheriting from a 3D attribute.
- getInitFile() - Static method in class mgui.interfaces.InterfaceEnvironment
- getInitSectionSet() - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getInitSectionSet() - Method in class mgui.morph.sections.MorphSections3DInt
- getInput() - Method in class mgui.neuro.components.cortical.AbstractCorticalInput
- getInput() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalInputEvent
- getInput() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
- getInputArgs(String[], String) - Method in class mgui.pipelines.JavaProcess
- getInputArgs(String[], String) - Method in class mgui.pipelines.NativeProcess
- getInputArgs(String[], String) - Method in class mgui.pipelines.PipelineProcess
-
Alters an argument array to set an input file for this process, and returns the result.
- getInputDataSource() - Method in interface mgui.models.dynamic.DynamicModelEnvironment
- getInputDataSource() - Method in class mgui.models.environments.SimpleEnvironment
- getInputFile() - Method in class mgui.pipelines.PipelineProcessInstance
-
Returns the path of the input file associated with this process.
- getInputFunction() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
- getInputNames() - Method in interface mgui.models.dynamic.DynamicModelEnvironment
- getInputNames() - Method in class mgui.models.environments.SimpleEnvironment
- getInputParameter() - Method in class mgui.pipelines.PipelineProcess
-
Gets the parameter which is used to determine the input file for this process.
- getInputShapeSet2D(InputStream) - Method in class mgui.io.standard.xml.svg.SVGFileInterface
- getInputState() - Method in interface mgui.models.dynamic.DynamicModelEnvironment
- getInputState() - Method in class mgui.models.environments.SimpleEnvironment
- getInputState() - Method in class mgui.models.environments.SimpleEnvironmentEvent
- getInputState(int) - Method in interface mgui.models.dynamic.DynamicModelEnvironment
- getInputState(int) - Method in class mgui.models.environments.SimpleEnvironment
- getInputStreams() - Method in class mgui.interfaces.plots.InterfacePlot
- getInputString() - Method in class mgui.pipelines.PipelineProcessInstance
-
Returns the path of the input file associated with this process.
- getInstance() - Static method in class mgui.interfaces.graphs.InterfaceGraphDisplayTitle
- getInstance() - Static method in class mgui.interfaces.tables.InterfaceDataTableTitle
- getInstance() - Method in class mgui.pipelines.PipelineProcessInstance
- getInstance() - Method in class mgui.pipelines.TaskParameter
- getInstance(int) - Method in class mgui.interfaces.projects.InterfaceProject
- getInstance(int) - Method in class mgui.pipelines.PipelineProcess
- getInstance(Class<?>, double) - Static method in class mgui.numbers.NumberFunctions
-
Returns an instance of an MguiNumber of the specified class and value.
- getInstance(String) - Method in class mgui.interfaces.graphics.InterfaceGraphicPanel
- getInstance(String) - Method in class mgui.interfaces.projects.InterfaceProject
- getInstance(String, double) - Static method in class mgui.numbers.NumberFunctions
-
Returns an instance of an MguiNumber of the specified type and value
- getInstance(DataSource, String, String, boolean, String, boolean) - Static method in class mgui.datasources.LinkedDataStream
-
Returns an instance of
LinkedDataStreamof the correct generic type, based on the data type of the linked field. - getInstance(DataType, double) - Static method in class mgui.numbers.NumberFunctions
-
Returns an instance of an MguiNumber of the specified type and value
- getInstance(InterfaceGraphic) - Static method in class mgui.interfaces.graphs.InterfaceGraphDisplayTitle
- getInstance(InterfaceGraphic) - Static method in class mgui.interfaces.tables.InterfaceDataTableTitle
- getInstanceDir() - Method in class mgui.interfaces.projects.InterfaceProject
- getInstanceForValue(Object, int) - Static method in class mgui.datasources.DataTypes
-
Converts a value from a
Stringto an instance of the specified type. - getInstanceIcon() - Static method in class mgui.interfaces.projects.ProjectInstance
- getInstanceNames() - Method in class mgui.interfaces.projects.InterfaceProject
- getInstancePrefix() - Method in class mgui.interfaces.projects.InterfaceProject
- getInstances() - Method in class mgui.interfaces.projects.InterfaceProject
-
Returns a (copied) array of the instances in this project
- getInstanceSuffix() - Method in class mgui.interfaces.projects.InterfaceProject
- getInstanceTimer() - Method in class mgui.command.CommandInterpreter
- getInt() - Method in class mgui.numbers.MguiInteger
- getInt() - Method in class mgui.numbers.MguiShort
- getIntCornerPoints(Polygon2DInt, double, double) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
- getIntegerFrequencies(ArrayList<MguiNumber>) - Static method in class mgui.stats.StatFunctions
-
Computes the frequency of each unique integer in the list.
- getIntensity() - Method in class mgui.util.Colour
- getIntensity() - Method in class mgui.util.Colour1f
- getIntensity() - Method in class mgui.util.Colour2f
- getIntensity() - Method in class mgui.util.Colour4f
- getIntercept() - Method in class mgui.image.util.WindowedColourModel
- getInterfaceCanvas3D() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getInterfaceFile() - Method in class mgui.interfaces.gui.FileButton
- getInterfaceGraphicInstance(String) - Static method in class mgui.interfaces.InterfaceEnvironment
-
Creates an instance of the specified graphic panel.
- getInterfaceGraphicNames() - Static method in class mgui.interfaces.InterfaceEnvironment
-
Returns a list of all
InterfaceGraphicclasses currently loaded in this environment. - getInterfaceObjectList(String) - Method in interface mgui.interfaces.Environment
-
Returns a named list of interface objects, probably belonging to a particular container and having the same type (although this is not necessarily true).
- getInterfaceObjectList(String) - Method in class mgui.interfaces.InterfaceEnvironment
-
Returns a named list of interface objects, probably belonging to a particular container and having the same type (although this is not necessarily true).
- getInterfacePanelInstance(String) - Static method in class mgui.interfaces.InterfaceEnvironment
-
Creates an instance of the specified interface panel.
- getInterfacePanelNames() - Static method in class mgui.interfaces.InterfaceEnvironment
-
Returns a list of all
InterfacePanelclasses currently loaded in this environment. - getInterfacePanels() - Method in class mgui.interfaces.InterfaceWorkspace
- getInterfacePlotInstance(String) - Static method in class mgui.interfaces.InterfaceEnvironment
-
Creates an instance of the specified plot panel.
- getInterfacePlotNames() - Static method in class mgui.interfaces.InterfaceEnvironment
-
Returns a list of all
InterfacePlotclasses currently loaded in this environment. - getInterpolatedValue(double) - Method in class mgui.geometry.neuro.mesh.SampleRay
- getInterpolatedValueAtPoint(String, Point3f) - Method in class mgui.interfaces.shapes.Volume3DInt
-
Returns a value which is interpolated from the voxel enclosing
pand its nearest neighbours. - getInterpolatedValueAtPoint(String, Point3f, int) - Method in class mgui.interfaces.shapes.Volume3DInt
-
Returns a value which is interpolated from the voxel enclosing
pand its nearest neighbours. - getInterpolatedValueAtPoint(Point3f) - Method in class mgui.interfaces.shapes.Volume3DInt
-
Returns a value which is interpolated from the voxel enclosing
pand its nearest neighbours. - getInterpolatedValueAtPoint(Point3f, int) - Method in class mgui.interfaces.shapes.Volume3DInt
-
Returns a value which is interpolated from the voxel enclosing
pand its nearest neighbours. - getInterpolation(MguiNumber, MguiNumber, MguiNumber) - Method in class mgui.interfaces.maps.ContinuousColourMap
- getIntersectedGraph(InterfaceAbstractGraph, HashMap<AbstractGraphNode, Integer>, Plane3D, float, float) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
-
Returns a Graph2DInt object derived from the plane and 3D graph.
- getIntersectedGraph(InterfaceAbstractGraph, HashMap<AbstractGraphNode, Integer>, Plane3D, float, float, Matrix4d) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
-
Returns a Graph2DInt object derived from the plane and 3D graph.
- getIntersectingFaces(Mesh3D, Mesh3D, float) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns a list of face indices indicating which faces intersect between
mesh1andmesh2. - getIntersectingFaces(Mesh3D, Mesh3D, float, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns two lists of face indices indicating which faces intersect between
mesh1andmesh2. - getIntersectingFacesBlocking(Mesh3D, Mesh3D, float, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns two lists of face indices indicating which faces intersect between
mesh1andmesh2. - getIntersection(VertexSelection) - Method in class mgui.interfaces.shapes.mesh.VertexSelection
-
Returns a new selection which is the intersection of this object and
selection. - getIntersectionCompositeImage(Volume3DInt, Plane3D, boolean) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Returns an Volume2DInt object representing the intersection of the given 3D composite
volumewithplane. - getIntersectionEdge(Triangle3D, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns the edge of intersection for triangle tri with plane p.
- getIntersectionEdge(Triangle3D, Plane3D, Point2f[]) - Static method in class mgui.geometry.util.GeometryFunctions
-
Sets the edge of intersection for triangle tri with plane p.
- getIntersectionEdgeRatio(Point3d, Point3d, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines the ratio along the line segment
pt1-pt2at which it intersectsplane. - getIntersectionEdgeRatio(Point3f, Point3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines the ratio along the line segment
pt1-pt2at which it intersectsplane. - getIntersectionEdgeRatio(Point3f, Vector3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
- getIntersectionImage(Volume3DInt, Plane3D, boolean) - Static method in class mgui.geometry.volume.VolumeFunctions
- getIntersectionImage(Volume3DInt, Plane3D, boolean, Matrix4d) - Static method in class mgui.geometry.volume.VolumeFunctions
- getIntersectionLine(Plane3D, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines the line of intersection between two planes, and returns the result in the 2D coordinate system of
plane2. - getIntersectionMesh(Mesh3D, Plane3D) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
-
Returns a Mesh2DInt object representing the intersection of the given 3D mesh with plane p.
- getIntersectionMesh(Mesh3D, Plane3D, ArrayList<MguiNumber>, ColourMap) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
-
Returns a Mesh2DInt object representing the intersection of the given 3D mesh with plane p.
- getIntersectionPoint(LineSegment2D, LineSegment2D) - Static method in class mgui.geometry.util.GeometryFunctions
- getIntersectionPoint(LineSegment2D, LineSegment2D, boolean, boolean) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns the intersection point between two lines or line segments.
- getIntersectionPoint(Mesh3D, Point3f, Vector3f) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Finds the point from the first face in the nodes list which intersects the line segment defined by
pand v. - getIntersectionPoint(Point3d, Point3d, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determine the point at which the line segment described by
p1andp2intersectsplane. - getIntersectionPoint(Point3d, Vector3d, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determine the point at which the line segment described by pt and v intersects plane p.
- getIntersectionPoint(Point3f, Point3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determine the point at which the line segment described by
p1andp2intersectsplane. - getIntersectionPoint(Point3f, Vector3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determine the point at which the line segment described by pt and v intersects plane p.
- getIntersectionPoint3D(Point3d, Point3d, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns point at which the line segment
pt1-pt2intersectsplane. - getIntersectionPoint3D(Point3f, Point3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns point at which the line segment
pt1-pt2intersectsplane. - getIntersectionPoint3D(Point3f, Vector3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns point at which the line segment defined by
pt1andvintersectsplane. - getIntersectionPoint3D(Point3f, Vector3f, Triangle3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines the point at which the line segment defined by
ptandvintersects triangletri. - getIntersectionPoints(Triangle3D, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines the points at which
triintersectsplane. - getIntersectionPoints(Triangle3D, Plane3D, boolean) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines the points at which
triintersectsplane. - getIntersectionPointSet(PointSet3D, Plane3D, float, float, HashMap<String, ArrayList<MguiNumber>>, ColourMap) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
-
Returns a PointSet2DInt object representing the points within
spacingof the planeplane. - getIntersectionPolygon(Box3D, Plane3D) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
-
Returns a 2D polygon in section coordinates representing the intersection of a Box3D object with the plane.
- getIntersectionPolygon2(Box3D, Plane3D) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
-
Returns a 2D polygon in section coordinates representing the intersection of a Box3D object with the plane.
- getIntersectionSegment(Triangle3D, Triangle3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines the line segment defining the seam of where
tri1andtri2intersect. - getIntersectionSegment(Vector2D, Rect2D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Calculates a line segment where
vectorcrossesrect. - getIntersectionSegments(Mesh3D, Mesh3D, InterfaceProgressBar) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Return a set of line segments which represent the intersection of one mesh with another.
- getIntersectionVector(Vector3DInt, Plane3D, float, float) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
-
Returns a Vector2DInt object which is the projection of
vectorontoplane, if and only if some part ofvectoris within the distance boundary specified byabove_distandbelow_dist. - getIntersectionVector(Vector3DInt, Plane3D, float, float, Matrix4d) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
-
Returns a Vector2DInt object which is the projection of
vectorontoplane, if and only if some part ofvectoris within the distance boundary specified byabove_distandbelow_dist. - getIntMaskedByValue(Volume3DInt, double) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Returns an integer mask of
grid, where a voxel has value = 1, whengrid(i,j,k,v) == comp_value(within tolerance), and 0 otherwise. - getIntMaskedByValue(Volume3DInt, double, boolean) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Returns an integer mask of
grid, where a voxel has value = 1, whengrid(i,j,k,v) == comp_value(within tolerance), and 0 otherwise. - getIntParameter(String, int) - Method in class au.edu.unsw.cse.Applet3d
- getIntVectorParameter(String) - Method in class au.edu.unsw.cse.Applet3d
- getInverseMappedValue(double) - Method in class mgui.image.util.WindowedColourModel
-
Maps a value according to the inverse of the linear window model:
- getInvertClip() - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getInvertedVolume(Volume3DInt) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Returns a
Grid3Dobject whose data is the inverse ofgrid. - getInvertedVolume(Volume3DInt, String) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Returns a
Grid3Dobject whose data is the inverse ofgrid. - getInvertedVolume(Volume3DInt, String, ProgressUpdater) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Returns a
Grid3Dobject whose data is the inverse ofgrid. - getIO() - Method in class mgui.interfaces.io.InterfaceIOType
- getIOInstance() - Method in class mgui.interfaces.io.InterfaceIOType
-
Returns a new instance of this type.
- getIOType() - Method in class mgui.io.FileLoader
- getIOType() - Method in class mgui.io.FileWriter
- getIOType() - Method in interface mgui.io.InterfaceIO
-
Returns the registered IO type for this object, if one exists
- getIOType(String) - Static method in class mgui.interfaces.InterfaceEnvironment
-
Returns a the IO types associated with
name - getIOTypeForInstance(InterfaceIO) - Static method in class mgui.interfaces.InterfaceEnvironment
-
Return the I/O type associated with the specific instance of
InterfaceIO. - getIOTypes() - Static method in class mgui.interfaces.InterfaceEnvironment
-
Returns a list of the IO types loaded at init
- getIOTypesForClass(Class<?>) - Static method in class mgui.interfaces.InterfaceEnvironment
-
Return all I/O types which are assignable from
clazz. - getIsCached() - Method in class mgui.interfaces.datasources.DataTableModel
- getIsCached() - Method in class mgui.interfaces.tables.InterfaceDataTable
- getIsEnabled() - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
- getIsInternalConcavePoly(Polygon2D, Point2f) - Static method in class mgui.geometry.util.GeometryFunctions
- getIsMajor() - Method in class mgui.interfaces.graphics.Graphic2DGrid
- getIsosurfaceFromVolume(Volume3DInt) - Method in class mgui.geometry.volume.VolumeEngine
-
Creates an isosurface at a specified isovalue in
volume. - getIsosurfaceFromVolume(Volume3DInt, String, double) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Constructs an isosurface from
volume; i.e., computes a mesh which represents the location where values in the 3D scalar field involumeare equal toiso_level. - getIsVisible() - Method in class mgui.interfaces.graphics.Graphic2DGrid
- getItem(int) - Method in class mgui.interfaces.maps.ValueMap
- getIterations() - Method in class mgui.models.dynamic.DynamicModelEngine
- getIterator() - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getIterator() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
- getIterator() - Method in class mgui.morph.sections.MappedPolygon2DPath
- getIterator() - Method in class mgui.morph.sections.MorphSections3DInt
- getJaggedEdgeNodes(Mesh3D, ArrayList<MguiNumber>, int, int, boolean) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Detects nodes corresponding to "jagged" edges; a jagged edge node is defined as one which has only
max_nbrsneighbours with the same value as itself, and at leastmin_nbrsneighbours which are the same value. - getJamaMatrix() - Method in class mgui.interfaces.variables.MatrixInt
-
Returns the Jama matrix for this object.
- getJamaMatrixAsMatrix4d(Matrix) - Static method in class mgui.geometry.util.GeometryFunctions
- getJungVertices() - Method in class mgui.geometry.Graph2D
- getJungVertices() - Method in class mgui.geometry.Graph3D
- getK() - Method in class mgui.models.dynamic.functions.SigmoidFunction
- getKeyFields() - Method in class mgui.datasources.DataTable
-
Returns a list of this table's key fields.
- getKeyInputVal() - Method in class mgui.interfaces.tools.ToolInputEvent
- getKeys() - Method in class mgui.interfaces.attributes.AttributeList
- getKeysFromMetaData(String) - Method in class mgui.datasources.DataSource
-
Returns a set of primary keys for the specified table
- getLabel() - Method in class mgui.datasources.DataField
- getLabel() - Method in class mgui.graphs.networks.AbstractNetworkGraphConnection
- getLabel() - Method in class mgui.interfaces.graphs.AbstractGraphEdge
- getLabel() - Method in class mgui.interfaces.graphs.AbstractGraphNode
- getLabel() - Method in class mgui.interfaces.graphs.DefaultGraphEdge
- getLabel() - Method in class mgui.interfaces.io.InterfaceIOType
- getLabel() - Method in class mgui.interfaces.plots.sgt.SgtAxis
- getLabel() - Method in class mgui.io.foreign.vol.Attr
- getLabel() - Method in class mgui.neuro.graphs.CorticalNetworkGraphNode
- getLabel() - Method in class mgui.neuro.graphs.NeuralNetConnection
- getLabelAppearance(Integer) - Method in class mgui.interfaces.shapes.PointSet3DInt
- getLabelAppearance(AbstractGraphNode) - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
- getLabelColour() - Method in class mgui.interfaces.graphics.Graphic2DGrid
- getLabelColour() - Method in class mgui.interfaces.graphics.util.Axes3D
- getLabelColour() - Method in class mgui.interfaces.shapes.InterfaceShape
- getLabelColour() - Method in class mgui.interfaces.shapes.Shape2DInt
- getLabelColour() - Method in class mgui.interfaces.shapes.Shape3DInt
- getLabelEdges() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
- getLabelFont() - Method in class mgui.interfaces.graphics.Graphic2DGrid
- getLabelFont() - Method in class mgui.interfaces.graphics.util.Axes3D
- getLabelFont() - Method in class mgui.interfaces.shapes.InterfaceShape
- getLabelFont() - Method in class mgui.interfaces.shapes.Shape2DInt
- getLabelFont() - Method in class mgui.interfaces.shapes.Shape3DInt
- getLabelNodes() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
- getLabelOffset() - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
- getLabelPosition() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
- getLabelPosition() - Method in class mgui.interfaces.shapes.PointSet2DInt
- getLabelPosition(String) - Static method in class mgui.interfaces.graphs.util.GraphFunctions
-
Returns the label position associated with the String
pos. - getLabelPositions() - Static method in class mgui.interfaces.graphs.util.GraphFunctions
-
Get a list of possible node label positions, as Strings.
- getLabelScale() - Method in class mgui.interfaces.shapes.InterfaceShape
- getLabelScale() - Method in class mgui.interfaces.shapes.Shape2DInt
- getLabelScale() - Method in class mgui.interfaces.shapes.Shape3DInt
- getLabelSize() - Method in class mgui.interfaces.graphics.Graphic2DGrid
- getLabelX() - Method in class mgui.interfaces.plots.osp.InterfacePlotOsp
- getLabelX() - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout
-
Returns the label for the X axis.
- getLabelY() - Method in class mgui.interfaces.plots.osp.InterfacePlotOsp
- getLabelY() - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout
-
Returns the label for the Y axis.
- getLaplacian(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Computes the discrete Laplacian for each vertex in
mesh. - getLargestContiguousRois(Mesh3D, ArrayList<MguiNumber>, int) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Retains only the largest contiguous ROIs in the given set of values; all others are set to
out_value. - getLastAdded() - Method in class mgui.interfaces.plots.sgt.InterfacePlotSgt
- getLastAdded() - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getLastAdded() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
-
Not implemented.
- getLastAdded() - Method in interface mgui.interfaces.shapes.ShapeSet
- getLastAdded() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
- getLastAdded() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
- getLastAddedPanel() - Method in class mgui.interfaces.InterfaceDisplayPanel
-
Retrieves the last added panel
- getLastAddedPanel() - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
-
Retrieves the last added panel
- getLastColumnAdded() - Method in class mgui.interfaces.shapes.InterfaceShape
-
VERTEX DATA STUFF
- getLastColumnChanged() - Method in class mgui.interfaces.shapes.InterfaceShape
- getLastColumnRemoved() - Method in class mgui.interfaces.shapes.InterfaceShape
- getLastFrame() - Method in interface au.edu.unsw.cse.Object3d
- getLastFrame() - Method in class au.edu.unsw.cse.Object3dAdaptor
- getLastFrame() - Method in class au.edu.unsw.cse.Point3dObject3d
- getLastFrame() - Method in class au.edu.unsw.cse.View3d
-
get the last frame no
- getLastFrame() - Method in class au.edu.unsw.cse.VRMLState
- getLastInsert() - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getLastInsert() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
-
Not implemented.
- getLastInsert() - Method in interface mgui.interfaces.shapes.ShapeSet
- getLastInsert() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
- getLastInsert() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
- getLastInserted() - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getLastInserted() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
-
Not implemented.
- getLastInserted() - Method in interface mgui.interfaces.shapes.ShapeSet
- getLastInserted() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
- getLastInserted() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
- getLastMap() - Method in class mgui.morph.sections.MappedPolygon2DPath
- getLastModified() - Method in class mgui.interfaces.plots.sgt.InterfacePlotSgt
- getLastModified() - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getLastModified() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
-
Not implemented.
- getLastModified() - Method in interface mgui.interfaces.shapes.ShapeSet
- getLastModified() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
- getLastModified() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
- getLastMoved() - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getLastMoved() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
-
Not implemented.
- getLastMoved() - Method in interface mgui.interfaces.shapes.ShapeSet
- getLastMoved() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
- getLastMoved() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
- getLastPipeline() - Method in class mgui.io.domestic.pipelines.PipelineXMLHandler
-
Returns the last pipeline loaded from XML.
- getLastPolygon() - Method in class mgui.morph.sections.MappedPolygon2DPath
- getLastQueriedObject() - Method in class mgui.interfaces.shapes.queries.InterfaceShapeQuery
- getLastRemoved() - Method in class mgui.interfaces.plots.sgt.InterfacePlotSgt
- getLastRemoved() - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getLastRemoved() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
-
Not implemented.
- getLastRemoved() - Method in interface mgui.interfaces.shapes.ShapeSet
- getLastRemoved() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
- getLastRemoved() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
- getLastRemovedPanel() - Method in class mgui.interfaces.InterfaceDisplayPanel
-
Retrieves the last removed panel
- getLastRemovedPanel() - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
-
Retrieves the last removed panel
- getLastResult() - Method in class mgui.interfaces.queries.InterfaceQuery
-
Returns the last query result.
- getLastSection() - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getLastSection() - Method in class mgui.interfaces.shapes.util.SectionSetIterator
- getLastSection() - Method in class mgui.morph.sections.MorphSections3DInt
- getLastSection() - Method in class mgui.morph.sections.util.MorphSectionSetIterator
- getLastSectionAdded() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
- getLastSectionRemoved() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
- getLastVertex() - Method in class mgui.geometry.Polygon2D
- getLayer(String) - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
-
Returns the layer associated with the specified name.
- getLayerNames() - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
- getLayout() - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
- getLayout3DTypes() - Static method in class mgui.interfaces.graphs.util.GraphFunctions
-
Returns list of available 3D graph layouts.
- getLayout3DTypes2() - Static method in class mgui.interfaces.graphs.util.GraphFunctions
-
Returns list of available 3D graph layouts.
- getLayoutAlignmentX(Container) - Method in class mgui.interfaces.layouts.LineLayout
- getLayoutAlignmentY(Container) - Method in class mgui.interfaces.layouts.LineLayout
- getLayoutClass() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
- getLayoutClass() - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
- getLayoutPanel() - Method in class mgui.interfaces.maps.ColourMap
- getLayoutPanel() - Method in class mgui.interfaces.maps.DiscreteColourMap
- getLayoutTypes() - Static method in class mgui.interfaces.graphs.util.GraphFunctions
-
Returns list of available graph layouts.
- getLayoutTypes2() - Static method in class mgui.interfaces.graphs.util.GraphFunctions
-
Returns list of available graph layouts.
- getLeafIcon() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
-
Returns the icon used to represent leaf nodes.
- getLegalName(String) - Method in class mgui.interfaces.shapes.InterfaceShape
- getLength() - Method in class mgui.datasources.DataField
- getLength() - Method in class mgui.geometry.LineSegment2D
- getLength() - Method in class mgui.geometry.Vector3D
- getLength() - Method in class mgui.neuro.components.compartments.CompartmentalDendrite
- getLensPoint() - Method in class mgui.interfaces.maps.Camera3D
- getLevels() - Method in class mgui.interfaces.projects.ProjectInstanceGroup
- getLibrary() - Method in class mgui.pipelines.PipelineProcess
- getLimits() - Method in class mgui.image.util.WindowedColourModel
-
Returns the limits of this windowed model
- getLineColour() - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns the colour of this shape's lines/edges.
- getLineColour() - Method in class mgui.interfaces.shapes.Shape2DInt
- getLineColour() - Method in class mgui.interfaces.shapes.Shape3DInt
- getLineCount() - Method in class mgui.interfaces.attributes.video.AttributeObjectVideoTaskDialogPanel
- getLineCount() - Method in class mgui.interfaces.graphics.video.RotateView3DTaskDialogPanel
- getLineCount() - Method in class mgui.interfaces.graphics.video.SetView3DTaskDialogPanel
- getLineCount() - Method in class mgui.interfaces.graphics.video.VideoTaskDialogPanel
-
Returns the number of lines in this panel
- getLineCount() - Method in class mgui.interfaces.shapes.video.ChangeSectionVideoTaskDialogPanel
- getLineHeight() - Static method in class mgui.interfaces.InterfaceEnvironment
-
Specifies the line width for panels using
LineLayouts orCategoryLayouts. - getLineOfSight() - Method in class mgui.interfaces.maps.Camera3D
- getLineStyle() - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns the line/edge style for this shape.
- getLineStyle() - Method in class mgui.interfaces.shapes.Shape2DInt
- getLineStyle() - Method in class mgui.interfaces.shapes.Shape3DInt
- getLinkedData(String) - Method in class mgui.interfaces.shapes.VertexDataColumn
-
Returns a
LinkedDataStreamspecified byname - getLinkedDataNames() - Method in class mgui.interfaces.shapes.VertexDataColumn
-
Returns a list of names for all data linked to this column
- getLinkedVertexData(String) - Method in class mgui.interfaces.shapes.InterfaceShape
-
Retrieves the vertex-wise data associated with a data-linked column.
- getLinkedVertexData(String) - Method in class mgui.interfaces.shapes.Shape2DInt
- getLinkedVertexDatum(String, int) - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns the value at the given vertex, for the given linked column.
- getLinkedVertexDatum(String, int) - Method in class mgui.interfaces.shapes.Shape2DInt
- getLinkField() - Method in class mgui.datasources.LinkedDataStream
- getLinkTable() - Method in class mgui.datasources.LinkedDataStream
- getList() - Method in class mgui.interfaces.attributes.AttributeSelection
- getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class mgui.geometry.util.NodeShapeComboRenderer
- getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class mgui.interfaces.gui.InterfaceComboBoxRenderer
- getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class mgui.interfaces.shapes.util.StrokeSample
-
Returns a list cell renderer for the stroke, so the sample can be displayed in a list or combo.
- getListWidth() - Method in class mgui.interfaces.gui.VariableComboBox
- getLoader() - Method in class mgui.io.domestic.shapes.VolumeInputOptions
- getLoaderComplement() - Method in class mgui.io.domestic.shapes.Mesh3DWriter
- getLoaderComplement() - Method in class mgui.io.FileWriter
-
Returns the
InterfaceIOTypeof aFileLoaderwhich is the complement of this writer; i.e., reads what this writer writes with identical encoding. - getLoaderComplement() - Method in class mgui.io.foreign.minc.MincSurfaceWriter
- getLoaderComplement() - Method in class mgui.io.standard.gifti.GiftiSurfaceWriter
- getLoaderComplement() - Method in class mgui.io.standard.nifti.NiftiVolumeWriter
- getLoaderInstance(String) - Static method in class mgui.io.domestic.shapes.xml.ShapeXMLFunctions
-
Attempts to return an instance of the loader from the qualified reference
loader. - getLoaderIOType() - Method in class mgui.interfaces.projects.ProjectDataItem
- getLoaderOptions() - Method in class mgui.datasources.DataSourceDriver
- getLoaderOptions() - Method in interface mgui.interfaces.io.PersistentObject
-
Returns the options used to last load this object, if available
- getLoaderOptions() - Method in class mgui.interfaces.shapes.InterfaceShape
- getLocalAttributes() - Method in class mgui.interfaces.InterfacePanel
- getLocale() - Static method in class mgui.interfaces.InterfaceEnvironment
-
Gets the locale.
- getLocale() - Method in class mgui.interfaces.shapes.ShapeModel3D
- getLocalName() - Method in class mgui.datasources.DataConnection
- getLocalName() - Method in class mgui.datasources.DataField
- getLocalName() - Method in class mgui.datasources.DataQuery
- getLocalName() - Method in class mgui.datasources.DataSource
- getLocalName() - Method in class mgui.datasources.DataTable
- getLocalName() - Method in class mgui.datasources.DataTableSet
- getLocalName() - Method in class mgui.geometry.Box3D
- getLocalName() - Method in class mgui.geometry.Graph3D
- getLocalName() - Method in class mgui.geometry.Grid3D
- getLocalName() - Method in class mgui.geometry.Mesh3D
- getLocalName() - Method in class mgui.geometry.Plane3D
- getLocalName() - Method in class mgui.geometry.Shape2D
- getLocalName() - Method in class mgui.geometry.Shape3D
- getLocalName() - Method in class mgui.graphs.networks.AbstractNetworkGraphConnection
- getLocalName() - Method in class mgui.image.util.WindowedColourModel
- getLocalName() - Method in class mgui.interfaces.attributes.Attribute
- getLocalName() - Method in class mgui.interfaces.attributes.AttributeList
- getLocalName() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
- getLocalName() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
- getLocalName() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getLocalName() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
- getLocalName() - Method in class mgui.interfaces.graphics.video.Video
- getLocalName() - Method in class mgui.interfaces.graphics.video.VideoTask
- getLocalName() - Method in class mgui.interfaces.graphics.View3D
- getLocalName() - Method in class mgui.interfaces.graphs.AbstractGraphEdge
- getLocalName() - Method in class mgui.interfaces.graphs.AbstractGraphNode
- getLocalName() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
- getLocalName() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
- getLocalName() - Method in class mgui.interfaces.InterfaceDisplayPanel
- getLocalName() - Method in class mgui.interfaces.InterfaceSplitPanel
- getLocalName() - Method in class mgui.interfaces.InterfaceWorkspace
- getLocalName() - Method in class mgui.interfaces.layouts.InterfaceLayoutWindow
- getLocalName() - Method in class mgui.interfaces.layouts.LayoutItem
- getLocalName() - Method in class mgui.interfaces.maps.Camera3D
- getLocalName() - Method in class mgui.interfaces.maps.ColourMap
- getLocalName() - Method in class mgui.interfaces.maps.Map2D
- getLocalName() - Method in class mgui.interfaces.maps.Map3D
- getLocalName() - Method in class mgui.interfaces.maps.NameMap
- getLocalName() - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
- getLocalName() - Method in class mgui.interfaces.plots.InterfacePlotDisplay
- getLocalName() - Method in class mgui.interfaces.projects.InterfaceProject
- getLocalName() - Method in class mgui.interfaces.projects.ProjectDirectory
- getLocalName() - Method in class mgui.interfaces.projects.ProjectInstance
- getLocalName() - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
- getLocalName() - Method in class mgui.interfaces.shapes.Mesh3DInt
- getLocalName() - Method in class mgui.interfaces.shapes.PointSet3DInt
- getLocalName() - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getLocalName() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
- getLocalName() - Method in class mgui.interfaces.shapes.Shape2DInt
- getLocalName() - Method in class mgui.interfaces.shapes.Shape3DInt
- getLocalName() - Method in class mgui.interfaces.shapes.ShapeModel3D
- getLocalName() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
- getLocalName() - Method in class mgui.interfaces.shapes.VertexDataColumn
- getLocalName() - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
- getLocalName() - Method in class mgui.interfaces.tables.InterfaceDataTable
- getLocalName() - Method in class mgui.interfaces.variables.VariableInt
- getLocalName() - Method in interface mgui.interfaces.xml.XMLObject
-
Returns the local name associated with this XML object.
- getLocalName() - Method in class mgui.io.InterfaceIOOptions
- getLocalName() - Method in class mgui.neuro.graphs.CorticalNetworkGraphNode
- getLocalName() - Method in class mgui.neuro.graphs.NeuralNetGraph
- getLocalName() - Method in class mgui.neuro.imaging.camino.CaminoProject
- getLocalName() - Method in class mgui.numbers.MguiBoolean
- getLocalName() - Method in class mgui.numbers.MguiDouble
- getLocalName() - Method in class mgui.numbers.MguiFloat
- getLocalName() - Method in class mgui.numbers.MguiInteger
- getLocalName() - Method in class mgui.numbers.MguiLong
- getLocalName() - Method in class mgui.numbers.MguiShort
- getLocalName() - Method in class mgui.pipelines.PipelineProcess
- getLocalName() - Method in class mgui.pipelines.PipelineProcessInstance
- getLocalName() - Method in class mgui.pipelines.PipelineTask
- getLocalName() - Method in class mgui.util.Colour
- getLocalName() - Method in class mgui.util.Colour3f
- getLocalName() - Method in class mgui.util.Colour4f
- getLocation() - Method in class mgui.interfaces.graphs.AbstractGraphNode
-
Returns the static location of this node.
- getLocation() - Method in class mgui.interfaces.layouts.LayoutItem
-
Returns the upper-left corner of this item, in document space.
- getLocation() - Method in class mgui.neuro.components.cortical.AbstractCorticalRegion
- getLogFile() - Static method in class mgui.interfaces.InterfaceEnvironment
- getLogger() - Method in class mgui.pipelines.PipelineProcess
- getLogger() - Method in class mgui.pipelines.PipelineProcessInstance
- getLoggingTarget() - Static method in class mgui.interfaces.InterfaceEnvironment
- getLoggingTimestamp() - Static method in class mgui.interfaces.InterfaceEnvironment
- getLoggingType() - Static method in class mgui.interfaces.InterfaceEnvironment
- getLogin() - Method in class mgui.datasources.DataConnection
- getLogin() - Method in class mgui.datasources.DataSourceDriver
- getLong() - Method in class mgui.numbers.MguiLong
- getLookAndFeel() - Static method in class mgui.interfaces.InterfaceEnvironment
- getLowIsTransparent() - Method in class mgui.image.util.WindowedColourModel
- getLowLimit() - Method in class mgui.models.dynamic.functions.HardLimitFunction
- getM() - Method in class mgui.interfaces.variables.MatrixInt
-
Returns the row dimension, M
- getMainAxis(SgtPlotFunctions.AxisType) - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout
- getMainAxis(SgtPlotFunctions.AxisType) - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
-
Returns the main axis of the given
SgtPlotFunctions.AxisType. - getMainClass() - Method in class mgui.pipelines.JavaProcess
- getMap() - Method in class mgui.interfaces.graphics.InterfaceGraphic
- getMap() - Method in class mgui.interfaces.graphics.util.DrawingEngine
-
Returns the current Map2D for this drawing engine.
- getMap() - Method in class mgui.io.domestic.maps.ColourMapXMLHandler
- getMap() - Method in class mgui.io.domestic.maps.NameMapXMLHandler
- getMap3D() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getMapBounds() - Method in class mgui.interfaces.maps.Map2D
- getMapCenterPt() - Method in class mgui.interfaces.maps.Map2D
- getMapDist(double) - Method in class mgui.interfaces.maps.Map2D
- getMapDist(int) - Method in class mgui.interfaces.graphics.util.DrawingEngine
- getMapDist(int) - Method in class mgui.interfaces.maps.Map2D
- getMapIdxToParent() - Method in class mgui.interfaces.shapes.Shape2DInt
- getMapKeys() - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
- getMapMax() - Method in class mgui.interfaces.shapes.Volume3DInt
- getMapMin() - Method in class mgui.interfaces.shapes.Volume3DInt
- getMappedPolygons(SectionSet3DInt, double) - Method in class mgui.morph.sections.MorphEngine
- getMappedPolygons(SectionSet3DInt, double, boolean) - Method in class mgui.morph.sections.MorphEngine
-
Maps the set of polygons in
polysetbetween each neighbouring section. - getMappedSQLTypeDBMStoJDBC(int, String) - Static method in class mgui.datasources.DataTypes
-
Return data type mapped to particular driver (for non-standard types) from DBMS type to JDBC type
- getMappedSQLTypeJDBCtoDBMS(int, String) - Static method in class mgui.datasources.DataTypes
- getMappedValue(double) - Method in class mgui.image.util.WindowedColourModel
-
Maps a value according to the linear window model:
- getMappedValueByte(Volume3DInt, int, int, int) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Returns the value of voxel [i,j,k] mapped with its colour model, as a
byte. - getMappedValueDouble(Volume3DInt, int, int, int) - Static method in class mgui.geometry.volume.VolumeFunctions
- getMappingAt(int) - Method in class mgui.interfaces.neuro.InterfaceNeuroAtlas
- getMappings() - Method in class mgui.interfaces.neuro.InterfaceNeuroAtlas
- getMapPoint(Point) - Method in class mgui.interfaces.maps.Map2D
-
Get the map coordinate of the screen point
- getMask(String) - Method in class mgui.interfaces.shapes.Volume3DInt
- getMask(Grid3D, VolumeMaskOptions_old) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Applies a voxel mask to an ImageComponent3D object, using the parameters in params.
- getMaskedCompositeImages(Volume3DInt) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Returns a set of composite images, comprised of all data columns specified for the composite, with alpha values and ordering as specified in the Volume3DInt object.
- getMaskedCompositeRSliceImage(Volume3DInt, int, boolean[][][]) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Returns a composite image from an R-slice plane, volume, and set of colour models and composite alphas.
- getMaskedImages(Volume3DInt) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Produces a stack of R-planar images from
volume, based upon the current data column and its associated colour map. - getMaskedImages(Volume3DInt, String) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Produces a stack of R-planar images from
volume, based upon the data incolumnand its associated colour map. - getMaskNames() - Method in class mgui.interfaces.shapes.Volume3DInt
-
Returns an ordered list of mask names for this volume.
- getMaskNormalizedValues(InterfaceShape, String, String, String) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
-
Normalize values in
source_columnby the mean of values innormalize_columnwhich lie in the maskmask_column. - getMaskNormalizedValues(InterfaceShape, String, String, String, String) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
-
Normalize values in
source_columnby thestatisticof values innormalize_columnwhich lie in the maskmask_column. - getMasks() - Method in class mgui.interfaces.shapes.Volume3DInt
- getMatrices() - Method in class mgui.io.domestic.variables.MatrixOutOptions
- getMatrix(String) - Method in class mgui.interfaces.plots.MatrixPlotDataSource
-
Return the matrix corresponding to
channel. - getMatrixFromPoint3d(Point3d) - Static method in class mgui.util.MathFunctions
- getMatrixProduct(Vector3f, Matrix4f) - Static method in class mgui.geometry.util.GeometryFunctions
-
Multiplies
vbyM, using only the first 3 x 3 subset ofM. - getMax() - Method in class mgui.interfaces.graphics.Graphic2DGrid
- getMax() - Method in class mgui.interfaces.maps.DiscreteColourMap
-
Returns the maximum value in this map's indices
- getMaxDisplayVertices() - Static method in class mgui.interfaces.InterfaceEnvironment
-
Specifies the maximal number of vertices to display on a shape for the current system.
- getMaxEnergy() - Method in class mgui.geometry.mesh.EnergySphere
- getMaxForColumn(Matrix, int) - Static method in class mgui.geometry.util.MatrixFunctions
-
Returns the maximum of
col. - getMaxForRow(Matrix, int) - Static method in class mgui.geometry.util.MatrixFunctions
-
Returns the maximum of
row. - getMaximum() - Method in class mgui.interfaces.gui.AbstractProgressUpdater
- getMaximum() - Method in class mgui.interfaces.gui.InterfaceProgressBar
- getMaximum() - Method in interface mgui.interfaces.ProgressUpdater
- getMaximumEdgeLength(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Searches all edges and returns the maximum length
- getMaxLength() - Method in class mgui.morph.sections.RadialRepresentation
- getMaxPt() - Method in class mgui.geometry.Box3D
- getMaxPt(Shape3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines a maximum point max_x, max_y, max_z from
shape. - getMaxPt(Point3f, Point3f) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines a maximum point max_x, max_y, max_z from two points.
- getMaxValue() - Method in class mgui.interfaces.shapes.dynamic.Volume4DInt
- getMaxVoxelMidPt() - Method in class mgui.geometry.Grid3D
- getMaxX() - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout
-
Returns the end of the X axis, in physical units (see
JPanefor details). - getMaxY() - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout
-
Returns the end of the Y axis, in physical units (see
JPanefor details). - getMean() - Method in interface mgui.models.dynamic.stats.DynamicModelStatistics
- getMean() - Method in class mgui.neuro.stats.SimpleStatistics
- getMeanCurvature(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
- getMeanForColumn(Matrix, int) - Static method in class mgui.geometry.util.MatrixFunctions
-
Returns the mean of
col. - getMeanForRow(Matrix, int) - Static method in class mgui.geometry.util.MatrixFunctions
-
Returns the mean of
row. - getMeanSphereMesh(Point3f, float, int, float, long) - Static method in class mgui.geometry.mesh.MeshFunctions
- getMedian(double[]) - Static method in class mgui.stats.StatFunctions
-
Returns the median of a list of values.
- getMedian(ArrayList<MguiNumber>) - Static method in class mgui.stats.StatFunctions
-
Returns the median of a list of values.
- getMember(int) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
- getMember(int) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
-
Returns the
ith member of this set - getMember(int) - Method in class mgui.interfaces.shapes.VolumeSet3DInt
-
Gets the i'th member in this set
- getMemberCount() - Method in class mgui.interfaces.shapes.VolumeSet3DInt
- getMembers() - Method in class mgui.interfaces.shapes.SectionSet3DInt
-
Returns a copy of this set's member list.
- getMembers() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
-
Returns a copy of this set's member list.
- getMembers() - Method in interface mgui.interfaces.shapes.ShapeSet
- getMembers() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
-
Returns a copy of this set's member list.
- getMembers() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
-
Returns a copy of this set's member list.
- getMembers() - Method in class mgui.interfaces.shapes.VolumeSet3DInt
-
Gets a list of this set's members
- getMembers(boolean) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
-
Returns a copy of this set's member list.
- getMergedPolygons(ArrayList<Polygon2D>) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
- getMergedPolygonsbak(ArrayList<Polygon2D>) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
- getMesh() - Method in class mgui.interfaces.shapes.Mesh3DInt
- getMesh() - Method in class mgui.io.domestic.shapes.MeshOptionsDialogBox
- getMesh() - Method in class mgui.io.domestic.shapes.SurfaceOutputDialogBox
- getMesh() - Method in class mgui.io.foreign.caret.CaretMetricOptionsDialog
- getMesh() - Method in class mgui.io.foreign.caret.CaretPaintOptionsDialog
-
Deprecated.
- getMesh() - Method in class mgui.io.standard.gifti.xml.GiftiXMLHandler
-
Returns the loaded surface.
- getMeshExpandedAlongNormals(Mesh3D, float) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Expands
meshalong its vertex normals by a distance ofexpansion. - getMeshParts(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
- getMeshParts(Mesh3D, HashMap<String, ArrayList<MguiNumber>>, ArrayList<HashMap<String, ArrayList<MguiNumber>>>) - Static method in class mgui.geometry.mesh.MeshFunctions
- getMeshParts(Mesh3D, HashMap<String, ArrayList<MguiNumber>>, ArrayList<HashMap<String, ArrayList<MguiNumber>>>, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns a set of non-contiguous meshes from
mesh. - getMeshParts(Mesh3DInt, ShapeSet3DInt) - Method in class mgui.geometry.mesh.MeshEngine
-
Creates new mesh objects as a set of non-contiguous meshes from
mesh_int, and adds these toshape_set. - getMeshParts(Mesh3DInt, ShapeSet3DInt, boolean, ProgressUpdater) - Method in class mgui.geometry.mesh.MeshEngine
-
Creates new mesh objects as a set of non-contiguous meshes from
mesh_int, and adds these toshape_set. - getMethods(String) - Method in class mgui.geometry.mesh.MeshEngine
- getMethods(String) - Method in class mgui.geometry.neuro.mesh.NeuroMeshEngine
- getMethods(String) - Method in class mgui.geometry.volume.VolumeEngine
- getMethods(String) - Method in class mgui.interfaces.graphics.util.DrawingEngine
- getMethods(String) - Method in class mgui.interfaces.shapes.util.ShapeEngine
- getMethods(String) - Method in interface mgui.interfaces.util.Engine
-
Returns a list of methods implementing a particular
operation. - getMidLimit() - Method in class mgui.models.dynamic.functions.HardLimitFunction
- getMidPoint(Point2f, Point2f, double) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines the mid-point of the line segment defined by
pt1andpt2, at the positionpos, which must range from 0.0 (i.e., atpt1to 1.0 (i.e., atpt2). - getMidPt(Point3f, Point3f) - Static method in class mgui.geometry.util.GeometryFunctions
-
Computes the mid-point of the line segment defined by
p1andp2. - getMin() - Method in class mgui.interfaces.graphics.Graphic2DGrid
- getMin() - Method in class mgui.interfaces.maps.DiscreteColourMap
-
Returns the minimum value in this map's indices
- getMinDistance() - Method in class mgui.interfaces.maps.Camera3D
- getMinForColumn(Matrix, int) - Static method in class mgui.geometry.util.MatrixFunctions
-
Returns the minimum of
col. - getMinForRow(Matrix, int) - Static method in class mgui.geometry.util.MatrixFunctions
-
Returns the minimum of
row. - getMinimalAngle(double) - Static method in class mgui.geometry.util.GeometryFunctions
- getMinimum() - Method in class mgui.interfaces.gui.AbstractProgressUpdater
- getMinimum() - Method in class mgui.interfaces.gui.InterfaceProgressBar
- getMinimum() - Method in interface mgui.interfaces.ProgressUpdater
- getMinimumEdgeLength(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Searches all edges and returns the minimum length
- getMinPt() - Method in class mgui.geometry.Box3D
- getMinPt(Shape3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines a minimum point min_x, min_y, min_z from
shape. - getMinPt(Point3f, Point3f) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines a minimum point min_x, min_y, min_z from two points.
- getMinScreenScale() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getMinScreenScaleHeight() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getMinScreenScaleWidth() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getMinValue() - Method in class mgui.interfaces.shapes.dynamic.Volume4DInt
- getMinVoxelMidPt() - Method in class mgui.geometry.Grid3D
- getMinX() - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout
-
Returns the start of the X axis, in physical units relative to its size (see
JPanefor details). - getMinY() - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout
-
Returns the start of the Y axis, in physical units (see
JPanefor details). - getMode() - Method in class mgui.interfaces.tools.shapes.ToolSelectShape2D
- getMode() - Method in class mgui.interfaces.tools.shapes.ToolSelectShape3D
- getMode() - Method in class mgui.io.standard.xml.svg.Instruction
- getMode() - Method in class mgui.models.environments.SimpleEnvironment
- getMode(double[]) - Static method in class mgui.stats.StatFunctions
-
Returns the mode of a list of values, where equality is determined as
abs(values[i] - values[j]) < default_precision. - getMode(double[], double) - Static method in class mgui.stats.StatFunctions
-
Returns the mode of a list of values, where equality is determined as
abs(values[i] - values[j]) < precision. - getMode(ArrayList<MguiNumber>) - Static method in class mgui.stats.StatFunctions
-
Returns the mode of a list of values, where equality is determined as
abs(values[i] - values[j]) < default_precision. - getModel() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getModel() - Method in class mgui.interfaces.shapes.InterfaceShape
- getModel() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
- getModel() - Method in class mgui.interfaces.shapes.ShapeModel3D
- getModel() - Method in interface mgui.interfaces.shapes.ShapeSet
- getModel() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
- getModel() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
- getModel() - Method in class mgui.interfaces.tables.InterfaceDataTable
- getModel() - Method in class mgui.interfaces.trees.InterfaceTreePanel
- getModel() - Method in class mgui.io.domestic.shapes.ShapeModel3DOutputOptions
- getModel() - Method in class mgui.models.dynamic.DynamicModelEngine
- getModelClip() - Method in class mgui.interfaces.shapes.util.ClipPlane
-
Plane for model clip defined as 4-vector, with elements A, B, C, D obtained from the plane equation Ax + By + Cz + D <= 0.
- getModelClip(Plane3D, float, float, boolean) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
-
Returns the up and down clipping planes for this plane
- getModelSet() - Method in class mgui.interfaces.shapes.ShapeModel3D
- getModifiedAttribute() - Method in class mgui.interfaces.shapes.InterfaceShape
- getModifiedAttribute() - Method in class mgui.interfaces.shapes.Shape2DInt
- getModifiedAttribute() - Method in class mgui.interfaces.shapes.Shape3DInt
- getMorphMesh(SectionSet3DInt, double) - Method in class mgui.morph.sections.MorphEngine
-
Given a set of sections, map nodes using radial rep and then triangulate between sections based upon this mapping, and each polygon's direction (CW or CCW)
- getMorphSections(SectionSet3DInt, double) - Method in class mgui.morph.sections.MorphEngine
- getMouseAdapter() - Method in class mgui.interfaces.tools.graphs.ToolGraphAdapter
- getMouseAdapter() - Method in class mgui.interfaces.tools.ToolInputAdapter
- getMouseAdapter() - Method in class mgui.interfaces.tools.ToolInputMouseAdapter
- getMouseCoords(Point) - Method in class mgui.interfaces.graphics.InterfaceGraphic
-
Return the mapped coordinates, depending on the InterfaceGraphic window, for the given screen coordinates.
- getMouseCoords(Point) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
- getMouseListener() - Method in class mgui.interfaces.graphics.InterfaceGraphic2DTextBox
- getMouseListener() - Method in class mgui.interfaces.graphics.InterfaceGraphicTextBox
- getMouseListener() - Method in interface mgui.interfaces.InterfaceMouseListener
- getMouseListener() - Method in class mgui.interfaces.InterfaceSelectionPanel
- getMouseListener() - Method in class mgui.interfaces.queries.InterfaceQueryPanel
- getMouseListener() - Method in class mgui.interfaces.shapes.selection.InterfaceSelectionSet
- getMouseListener() - Method in class mgui.interfaces.shapes.Text2DIntMouseCoords
- getMouseWheelListener() - Method in class mgui.interfaces.graphics.InterfaceGraphic2DTextBox
- getMouseWheelListener() - Method in class mgui.interfaces.graphics.InterfaceGraphicTextBox
- getMouseWheelListener() - Method in interface mgui.interfaces.InterfaceMouseListener
- getMouseWheelListener() - Method in class mgui.interfaces.InterfaceSelectionPanel
- getMouseWheelListener() - Method in class mgui.interfaces.queries.InterfaceQueryPanel
- getMouseWheelListener() - Method in class mgui.interfaces.shapes.selection.InterfaceSelectionSet
- getMouseWheelListener() - Method in class mgui.interfaces.shapes.Text2DIntMouseCoords
- getMultiple(double, double) - Static method in class mgui.numbers.NumberFunctions
- getMultiPolygonMapping(ArrayList<Polygon2D>, ArrayList<Polygon2D>) - Method in class mgui.morph.sections.MorphEngine
- getN() - Method in class mgui.interfaces.variables.MatrixInt
-
Returns the column dimension, N
- getN() - Method in class mgui.interfaces.variables.StringVectorInt
- getN() - Method in class mgui.interfaces.variables.VectorInt
- getN() - Method in interface mgui.models.dynamic.stats.DynamicModelStatistics
- getN() - Method in class mgui.neuro.components.compartments.CompartmentalComponent
- getN() - Method in class mgui.neuro.stats.SimpleStatistics
- getName() - Method in class mgui.datasources.DataConnection
- getName() - Method in class mgui.datasources.DataField
- getName() - Method in class mgui.datasources.DataQuery
- getName() - Method in class mgui.datasources.DataSource
- getName() - Method in class mgui.datasources.DataSourceDriver
- getName() - Method in class mgui.geometry.mesh.MeshEngine
- getName() - Method in class mgui.geometry.neuro.mesh.NeuroMeshEngine
- getName() - Method in class mgui.geometry.util.NodeShape
- getName() - Method in class mgui.geometry.volume.VolumeEngine
- getName() - Method in class mgui.interfaces.AbstractInterfaceObject
- getName() - Method in class mgui.interfaces.attributes.Attribute
- getName() - Method in class mgui.interfaces.attributes.video.AttributeObjectVideoTask
- getName() - Method in class mgui.interfaces.graphics.Graphic2DGrid
- getName() - Method in class mgui.interfaces.graphics.InterfaceGraphic
- getName() - Method in class mgui.interfaces.graphics.util.Axes3D
- getName() - Method in class mgui.interfaces.graphics.util.DrawingEngine
- getName() - Method in class mgui.interfaces.graphics.video.RotateView3DTask
- getName() - Method in class mgui.interfaces.graphics.video.SetView3DTask
- getName() - Method in class mgui.interfaces.graphics.video.Video
- getName() - Method in class mgui.interfaces.graphics.video.VideoTask
- getName() - Method in class mgui.interfaces.graphics.View3D
- getName() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
- getName() - Method in class mgui.interfaces.InterfaceOptions
- getName() - Method in class mgui.interfaces.io.InterfaceFile
- getName() - Method in class mgui.interfaces.io.InterfaceIOType
- getName() - Method in class mgui.interfaces.layouts.LayoutDocument
- getName() - Method in class mgui.interfaces.layouts.LayoutItem
- getName() - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
- getName() - Method in class mgui.interfaces.maps.Camera3D
- getName() - Method in class mgui.interfaces.maps.ColourMap
- getName() - Method in interface mgui.interfaces.math.VariableObject
- getName() - Method in interface mgui.interfaces.NamedObject
-
Gets the name for this object.
- getName() - Method in class mgui.interfaces.neuro.InterfaceNeuroAtlas
- getName() - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
- getName() - Method in class mgui.interfaces.plots.mgui.PlotMap2D
- getName() - Method in class mgui.interfaces.plots.osp.InterfaceStripChart.Variable
- getName() - Method in class mgui.interfaces.projects.InterfaceProject
- getName() - Method in class mgui.interfaces.projects.ProjectDataItem
- getName() - Method in class mgui.interfaces.projects.ProjectInstance
- getName() - Method in class mgui.interfaces.queries.InterfaceQuery
- getName() - Method in class mgui.interfaces.shapes.InterfaceShape
- getName() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
- getName() - Method in class mgui.interfaces.shapes.util.ShapeEngine
- getName() - Method in class mgui.interfaces.shapes.VertexDataColumn
- getName() - Method in class mgui.interfaces.shapes.video.ChangeSectionVideoTask
- getName() - Method in class mgui.interfaces.tables.InterfaceTableModel
- getName() - Method in class mgui.interfaces.tools.dialogs.DialogTool
- getName() - Method in class mgui.interfaces.tools.graphics.Tool2D
- getName() - Method in class mgui.interfaces.tools.graphics.Tool3D
- getName() - Method in class mgui.interfaces.tools.graphs.ToolGraph
- getName() - Method in interface mgui.interfaces.tools.Tool
- getName() - Method in class mgui.interfaces.variables.VariableInt
- getName() - Method in class mgui.io.foreign.vol.Attr
- getName() - Method in interface mgui.models.dynamic.DynamicModelEnvironmentSensor
- getName() - Method in class mgui.models.environments.AbstractEnvironmentDataSource
- getName() - Method in class mgui.neuro.components.AbstractNeuroComponent
- getName() - Method in class mgui.neuro.components.cortical.AbstractCorticalRegion
- getName() - Method in class mgui.neuro.graphs.CorticalNetworkGraph
- getName() - Method in class mgui.neuro.graphs.NeuralNetGraph
- getName() - Method in class mgui.neuro.networks.AbstractNeuralNet
- getName() - Method in class mgui.neuro.networks.CorticalNetwork
- getName() - Method in class mgui.pipelines.PipelineProcess
- getName() - Method in class mgui.pipelines.PipelineProcessInstance
- getName() - Method in class mgui.pipelines.PipelineTask
- getName() - Method in class mgui.pipelines.TaskParameterInstance
- getName() - Method in class mgui.resources.icons.NamedIcon
- getName() - Method in class mgui.util.ScaledUnit
- getName() - Method in class mgui.util.Unit
- getNameAt(int) - Method in class mgui.interfaces.neuro.InterfaceNeuroAtlas
- getNameCount() - Method in class mgui.io.foreign.caret.CaretPaintLoader.Header
- getNameForInterfaceGraphicClass(Class<? extends InterfaceGraphic>) - Static method in class mgui.interfaces.InterfaceEnvironment
-
Returns the name corresponding to the given interface graphic class.
- getNameMap() - Method in class mgui.interfaces.maps.DiscreteColourMap
- getNameMap() - Method in class mgui.interfaces.neuro.InterfaceNeuroAtlas
- getNameMap() - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns the name map associated with the current column, or
nullif there is no column, or no name map associated with it. - getNameMap() - Method in class mgui.interfaces.shapes.VertexDataColumn
-
Returns the associated name map, or
nullif none exists. - getNameMap(String) - Static method in class mgui.interfaces.InterfaceEnvironment
-
Gets the NameMap with the specified name
- getNameMap(String) - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns the name map associated with
column, ornullif there is no name map associated with it. - getNameMapNode() - Method in class mgui.interfaces.InterfaceWorkspace
- getNameMaps() - Method in class mgui.interfaces.InterfaceDisplayPanel
- getNameMaps() - Static method in class mgui.interfaces.InterfaceEnvironment
-
Gets a list of loaded name maps.
- getNames() - Method in class mgui.interfaces.maps.NameMap
-
Returns all names in this name map.
- getNames() - Method in class mgui.io.domestic.datasources.ImportDataTableOptions
- getNames() - Method in class mgui.io.domestic.shapes.ShapeDataInputOptions
- getNearestAxis(Vector3d) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
- getNearestAxis(Vector3d, boolean) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
- getNearestNeighbour(Point2f, ArrayList<Point2f>) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines the nearest neighbour of
pin the listnodes. - getNearestNeighbour(Point3f) - Method in class mgui.geometry.util.K3DBinaryTree
-
Searches this binary tree for the nearest neighbour
- getNearestNeighbour3DBlocking(Shape3DInt, Shape3DInt) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
- getNearestNeighbours(InterfaceShape, InterfaceShape) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
-
Returns a list of vertex indices from
sourcewhich are nearest neighbours of the corresponding vertices oftarget. - getNearestSample(double) - Method in class mgui.geometry.neuro.mesh.SampleRay
- getNeighbourhood(int) - Method in class mgui.geometry.mesh.NeighbourhoodMesh
- getNeighbourhoodPoints(TreeSet<Point3f>, Mesh3D, NeighbourhoodMesh, int, int) - Static method in class mgui.geometry.mesh.MeshFunctions
- getNeighbourhoodPoints(Mesh3D, NeighbourhoodMesh, int) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns a list of points corresponding to the immediate (1st level) neighbourhood of node
node. - getNeighbourhoodPoints(Mesh3D, NeighbourhoodMesh, int, int) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns a list of points corresponding to the n-th level neighbourhood of node
node, where n is specified by the parameterlevels - getNeighbourhoodRing(int) - Method in class mgui.geometry.mesh.NeighbourhoodMesh
-
Return neighbourhood as connected cycle, or null if neighbourhood does not form a cycle
- getNeighbourhoodSubmesh(Mesh3D, int) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Gets a submesh from
meshconsisting of the neighbourhood of vertexi. - getNeighbouringVoxels(Grid3D, int[], int) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Returns the indices off all first neighbours of
voxel, plusvoxel. - getNeighbouringVoxels(Grid3D, Point3f) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Returns the indices off all first neighbours of the voxel enclosing
point, plus that voxel. - getNeighbouringVoxels(Grid3D, Point3f, int) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Returns the indices off all first neighbours of the voxel enclosing
point, plus that voxel. - getNeighbourList() - Method in class mgui.geometry.mesh.Neighbourhood
- getNeighbours(int) - Method in class mgui.geometry.Grid3D
-
Returns the immediate neighbours of the voxel at
idx. - getNet() - Method in class mgui.interfaces.neuro.NeuralNetEvent
- getNet() - Method in class mgui.models.networks.NetworkEvent
- getNewInstance(String) - Method in class mgui.interfaces.queries.InterfaceQuery
-
Returns a new instance of this class of query.
- getNewInstance(String) - Method in class mgui.interfaces.shapes.queries.InterfaceShapeQuery
- getNewInstance(String) - Method in class mgui.interfaces.shapes.queries.ShapeSummaryQuery
- getNewPlot() - Method in class mgui.interfaces.plots.NewPlotDialog
- getNext() - Method in class mgui.morph.sections.MorphNodeMap2D
- getNextID() - Method in class mgui.interfaces.shapes.ShapeModel3D
- getNextSection() - Method in class mgui.interfaces.shapes.util.SectionSetIterator
- getNextSection() - Method in class mgui.morph.sections.util.MorphSectionSetIterator
- getNextSplitPanel(InterfaceGraphicWindow) - Method in class mgui.interfaces.InterfaceDisplayPanel
-
Returns a new split panel, determined as the first non-split window encountered, searching through the nested stack of split panels.
- getNextSquare(double) - Static method in class mgui.numbers.NumberFunctions
-
Returns the next highest square number
- getNextSubSection() - Method in class mgui.morph.sections.MorphSections3DInt
- getNextVertex(int) - Method in class mgui.geometry.Polygon2D
- getNiftiDataType(int) - Static method in class mgui.io.standard.nifti.util.NiftiFunctions
-
Convert from
DataBuffertypes to Nifti types. - getNode() - Method in class mgui.interfaces.shapes.ShapeSceneNode
- getNode() - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
-
Sets and returns a Java3D node from the given Grid3D and Texture3D
- getNode() - Method in class mgui.interfaces.trees.TreeEvent
- getNode(int) - Method in class mgui.geometry.Mesh3D.MeshFace3D
- getNode(AbstractCorticalRegion) - Method in class mgui.neuro.graphs.CorticalNetworkGraph
- getNodeAngles(Polygon2D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns an array of angles made by each node of
polygon - getNodeAsSections() - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
-
Sets and returns a Java3D node from the given Grid3D and Texture3D; node will be a set of 2D planes corresponding the the section sets in the volume's parent set
- getNodeAsVolume() - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
-
Sets and returns a Java3D node from the given Grid3D and Texture3D; node will be a 3D volume texture
- getNodeBool(int) - Method in class mgui.interfaces.shapes.BoolPolygon2DInt
- getNodeBool(int) - Method in class mgui.interfaces.shapes.IntPolygon2DInt
- getNodeCount() - Method in class mgui.io.foreign.caret.CaretPaintLoader.Header
- getNodeFactory() - Static method in class mgui.interfaces.graphs.util.GraphFunctions
- getNodeFactory(Class<T>, String, boolean, boolean) - Static method in class mgui.interfaces.graphs.util.GraphFunctions
- getNodeIndex(int) - Method in class mgui.morph.sections.RadialRepresentation
-
Gets the polygon index corresponding to the radius index i
- getNodeLabelFont() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
- getNodeLabelRenderer(Renderer.VertexLabel.Position) - Static method in class mgui.interfaces.graphs.util.GraphFunctions
-
Returns a node label renderer which can be turned off.
- getNodes() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
- getNodes() - Method in class mgui.interfaces.shapes.NodesUpdater
- getNodes(boolean) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
-
Returns a list of all nodes of all members in this set.
- getNodesInsideProjectionLimits(ArrayList<Point3f>, Plane3D, float, float) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines which points in
nodeslie within the projection limits specified byplane,above_limit, andbelow_limit. - getNodeTangents(ArrayList<MappedPolygon2DPath>, double, double) - Method in class mgui.morph.sections.MorphEngine
-
Given a list of mapped polygons, assign tangents to nodes based upon the mapping vectors.
- getNodeVisibilityPredicate(boolean) - Static method in class mgui.interfaces.graphs.util.GraphFunctions
-
Returns a predicate object to control the visibility of nodes in a graph.
- getNonLinkedDataColumns() - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns a list of this shape's data columns, minus the linked columns.
- getNonLinkedDataColumns() - Method in class mgui.interfaces.shapes.Shape2DInt
- getNonzeroAxes() - Method in class mgui.geometry.Box3D
- getNormal() - Method in class mgui.geometry.Plane3D
-
Returns the normal vector, as a unit vector, for this plane.
- getNormal(Point2d, Point2d, Point2d, boolean) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines the vector normal to the 2D curve at point
p, wherep0andp1are the point before and afterp, respectively. - getNormal(Point2f, Point2f, Point2f, boolean) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines the vector normal to the 2D curve at point
p, wherep0andp1are the point before and afterp, respectively. - getNormalAtFace(int) - Method in class mgui.geometry.Mesh3D
- getNormalized(double) - Method in class mgui.stats.Histogram
- getNormalizedCurve(ArrayList<Double>) - Static method in class mgui.neuro.stats.SignalProcessing
-
Normalizes this curve to the max and min of its values.
- getNormalizedCurve(ArrayList<Double>, double, double) - Static method in class mgui.neuro.stats.SignalProcessing
-
Normalizes this curve to max and min.
- getNormalizedValues(InterfaceShape, String, double, double, double, double) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
-
Normalize values in
source_columnto from the range[source_min, source_max]to the range[target_min, target_max] - getNormals() - Method in class mgui.geometry.Mesh3D
- getNormals(Polygon2D, boolean) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns a list of vectors which are the normals to the nodes of
polygon, given a direction of normal, indicated byCW(clockwise iftrue, counterclockwise iffalse). - getNow(String) - Static method in class mgui.interfaces.InterfaceEnvironment
- getNumericFields() - Method in class mgui.datasources.LinkedDataStream
-
Returns all fields which are numeric.
- getNumericValue() - Method in class mgui.datasources.DataField
- getNumericValue(T, String) - Method in class mgui.datasources.LinkedDataStream
-
Returns the value for
fieldat record where link field equalskey. - getObject() - Method in class mgui.interfaces.queries.QueryResult
-
Returns the queriable object associated with this result
- getObject(int) - Method in class mgui.datasources.DataRecordSet
- getObjectClass() - Method in class mgui.datasources.DataField
- getObjectClass() - Method in class mgui.interfaces.attributes.Attribute
-
Returns the object class for this parameterized
Attribute. - getObjectForXML(String, Attributes, String) - Static method in class mgui.interfaces.xml.XMLFunctions
-
Returns a new instantiated Object corresponding to the "object_class" field of
attributes. - getObjectForXMLString(Class<?>, String) - Static method in class mgui.interfaces.xml.XMLFunctions
-
Attempts to detect the data type of
sand return a newly instantiated Object of the correct Class. - getObjectIcon() - Method in class mgui.datasources.DataConnection
- getObjectIcon() - Method in class mgui.datasources.DataQuery
- getObjectIcon() - Method in class mgui.datasources.DataSource
- getObjectIcon() - Method in class mgui.datasources.DataTable
- getObjectIcon() - Method in class mgui.datasources.DataTableSet
- getObjectIcon() - Method in class mgui.datasources.LinkedDataStream
- getObjectIcon() - Method in class mgui.interfaces.attributes.AttributeList
- getObjectIcon() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
- getObjectIcon() - Method in class mgui.interfaces.datasources.InterfaceDatasourcePanel
- getObjectIcon() - Method in class mgui.interfaces.graphics.InterfaceGraphic
- getObjectIcon() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
- getObjectIcon() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getObjectIcon() - Method in class mgui.interfaces.graphics.InterfaceGraphicPanel
- getObjectIcon() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
- getObjectIcon() - Method in class mgui.interfaces.graphics.util.Axes3D
- getObjectIcon() - Method in class mgui.interfaces.graphics.View3D
- getObjectIcon() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
- getObjectIcon() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
- getObjectIcon() - Method in class mgui.interfaces.InterfaceDisplayPanel
- getObjectIcon() - Method in class mgui.interfaces.InterfacePanel
- getObjectIcon() - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
- getObjectIcon() - Method in class mgui.interfaces.InterfaceWorkspace.CollectionTreeNode
- getObjectIcon() - Method in class mgui.interfaces.InterfaceWorkspace
- getObjectIcon() - Method in class mgui.interfaces.io.InterfaceFilePanel
- getObjectIcon() - Method in class mgui.interfaces.io.InterfaceIOType
- getObjectIcon() - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
- getObjectIcon() - Method in class mgui.interfaces.maps.Camera3D
- getObjectIcon() - Method in class mgui.interfaces.maps.ContinuousColourMap
- getObjectIcon() - Method in class mgui.interfaces.maps.DiscreteColourMap
- getObjectIcon() - Method in class mgui.interfaces.maps.InterfaceMapPanel
- getObjectIcon() - Method in class mgui.interfaces.maps.NameMap
- getObjectIcon() - Method in class mgui.interfaces.neuro.InterfaceCorticalThicknessPanel
- getObjectIcon() - Method in class mgui.interfaces.pipelines.InterfacePipelinesPanel
- getObjectIcon() - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
- getObjectIcon() - Method in class mgui.interfaces.plots.InterfacePlot
- getObjectIcon() - Method in class mgui.interfaces.plots.InterfacePlotDisplay
- getObjectIcon() - Method in class mgui.interfaces.projects.InterfaceProject
- getObjectIcon() - Method in class mgui.interfaces.projects.InterfaceProjectPanel
- getObjectIcon() - Method in class mgui.interfaces.projects.ProjectDataItem
- getObjectIcon() - Method in class mgui.interfaces.projects.ProjectDirectory
- getObjectIcon() - Method in class mgui.interfaces.projects.ProjectInstance
- getObjectIcon() - Method in class mgui.interfaces.queries.InterfaceQuery
- getObjectIcon() - Method in class mgui.interfaces.queries.InterfaceQueryPanel
- getObjectIcon() - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
- getObjectIcon() - Method in class mgui.interfaces.shapes.InterfaceSectionSetPanel
- getObjectIcon() - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns an icon for this shape, if one has been defined.
- getObjectIcon() - Method in class mgui.interfaces.shapes.InterfaceShape.VertexDataSet
- getObjectIcon() - Method in class mgui.interfaces.shapes.InterfaceShapesPanel
- getObjectIcon() - Method in class mgui.interfaces.shapes.mesh.InterfaceMeshPanel
- getObjectIcon() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
- getObjectIcon() - Method in class mgui.interfaces.shapes.ShapeModel3D
- getObjectIcon() - Method in class mgui.interfaces.shapes.VertexDataColumn
- getObjectIcon() - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
- getObjectIcon() - Method in class mgui.interfaces.tables.InterfaceDataTable
- getObjectIcon() - Method in class mgui.interfaces.tools.dialogs.DialogTool
- getObjectIcon() - Method in class mgui.interfaces.tools.graphics.Tool2D
- getObjectIcon() - Method in class mgui.interfaces.tools.graphics.Tool3D
- getObjectIcon() - Method in class mgui.interfaces.tools.graphs.ToolGraph
- getObjectIcon() - Method in class mgui.interfaces.tools.InterfaceToolPanel
- getObjectIcon() - Method in class mgui.interfaces.tools.shapes.util.RulerDialog
- getObjectIcon() - Method in class mgui.interfaces.trees.InterfaceTreePanel
- getObjectIcon() - Method in class mgui.interfaces.variables.MatrixInt
- getObjectIcon() - Method in class mgui.interfaces.variables.StringVectorInt
- getObjectIcon() - Method in class mgui.interfaces.variables.VariableInt
- getObjectIcon() - Method in class mgui.interfaces.variables.VectorInt
- getObjectIcon() - Method in class mgui.io.domestic.graphs.GraphFileLoader
- getObjectIcon() - Method in class mgui.io.domestic.graphs.GraphFileWriter
- getObjectIcon() - Method in class mgui.io.domestic.maps.ContinuousColourMapLoader
- getObjectIcon() - Method in class mgui.io.domestic.maps.ContinuousColourMapWriter
- getObjectIcon() - Method in class mgui.io.domestic.maps.DiscreteColourMapLoader
- getObjectIcon() - Method in class mgui.io.domestic.maps.DiscreteColourMapWriter
- getObjectIcon() - Method in class mgui.io.domestic.maps.NameMapLoader
- getObjectIcon() - Method in class mgui.io.domestic.maps.NameMapWriter
- getObjectIcon() - Method in class mgui.io.domestic.shapes.ShapeDataLoader
- getObjectIcon() - Method in class mgui.io.domestic.shapes.ShapeModel3DLoader
- getObjectIcon() - Method in class mgui.io.domestic.shapes.ShapeModel3DWriter
- getObjectIcon() - Method in class mgui.io.domestic.shapes.SurfaceDataFileLoader
- getObjectIcon() - Method in class mgui.io.domestic.shapes.SurfaceDataFileWriter
- getObjectIcon() - Method in class mgui.io.domestic.shapes.SurfaceFileLoader
- getObjectIcon() - Method in class mgui.io.domestic.shapes.SurfaceFileWriter
- getObjectIcon() - Method in class mgui.io.domestic.shapes.VectorSet3DLoader
- getObjectIcon() - Method in class mgui.io.domestic.shapes.VolumeFileLoader
- getObjectIcon() - Method in class mgui.io.domestic.shapes.VolumeFileWriter
- getObjectIcon() - Method in class mgui.io.domestic.variables.MatrixFileLoader
- getObjectIcon() - Method in class mgui.io.domestic.variables.MatrixFileWriter
- getObjectIcon() - Method in class mgui.io.domestic.views.View3DLoader
- getObjectIcon() - Method in class mgui.io.domestic.views.View3DWriter
- getObjectIcon() - Method in class mgui.io.FileLoader
- getObjectIcon() - Method in class mgui.io.FileWriter
- getObjectIcon() - Method in class mgui.neuro.imaging.camino.CaminoProject
- getObjectIcon() - Method in class mgui.pipelines.InterfacePipeline
- getObjectIcon() - Method in class mgui.pipelines.JavaProcess
- getObjectIcon() - Method in class mgui.pipelines.NativeProcess
- getObjectIcon() - Method in class mgui.pipelines.PipelineFork
- getObjectIcon() - Method in class mgui.pipelines.PipelineProcess
- getObjectIcon() - Method in class mgui.pipelines.PipelineProcessInstance
- getObjectIcon() - Method in interface mgui.resources.icons.IconObject
-
Returns the
Iconassociated with this object. - getObjectIcon() - Method in class mgui.resources.icons.NamedIcon
- getObjects() - Method in class mgui.interfaces.queries.InterfaceQuery
-
Returns a list of the objects for which this query has results, in the order they were added.
- getObservableDataSource() - Method in interface mgui.models.dynamic.DynamicModelEnvironment
- getObservableDataSource() - Method in class mgui.models.environments.SimpleEnvironment
- getObservableNames() - Method in interface mgui.models.dynamic.DynamicModelEnvironment
- getObservableNames() - Method in class mgui.models.environments.SimpleEnvironment
- getObservableSize() - Method in interface mgui.models.dynamic.DynamicModelEnvironment
- getObservableSize() - Method in class mgui.models.environments.SimpleEnvironment
- getObservableState() - Method in interface mgui.models.dynamic.DynamicModelEnvironment
- getObservableState() - Method in class mgui.models.environments.SimpleEnvironment
- getObservableState(int) - Method in interface mgui.models.dynamic.DynamicModelEnvironment
- getObservableState(int) - Method in class mgui.models.environments.SimpleEnvironment
- getODESolver() - Method in class mgui.neuro.components.AbstractNeuroComponent
- getODESolver() - Method in class mgui.neuro.components.compartments.AbstractCompartment
- getOffset() - Method in class mgui.models.updaters.LinearUpdater
- getOldPanel() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
- getOp(int) - Static method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
- getOpenIcon() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
-
Returns the icon used to represent non-leaf nodes that are expanded.
- getOperations() - Method in class mgui.geometry.mesh.MeshEngine
- getOperations() - Method in class mgui.geometry.neuro.mesh.NeuroMeshEngine
- getOperations() - Method in class mgui.geometry.volume.VolumeEngine
- getOperations() - Method in class mgui.interfaces.graphics.util.DrawingEngine
- getOperations() - Method in class mgui.interfaces.shapes.util.ShapeEngine
- getOperations() - Method in interface mgui.interfaces.util.Engine
-
Returns a list of the operations available for this
Engine. - getOppositeEdge(int, MeshEdge) - Method in class mgui.geometry.mesh.MeshTriangle
- getOppositeFaceIndex(int, int) - Method in class mgui.geometry.mesh.MeshEdgeSet
-
Get the face index (i.e., in the source mesh) of the triangle opposite to triangle at
face_idx, which is joined atedge. - getOppositeNode(int, int) - Method in class mgui.geometry.mesh.MeshEdgeSet
-
Get the vertex index (i.e., in the source mesh) of the vertex opposite to triangle at
tri_index, which is joined atedge. - getOppositeNode(MeshEdge) - Method in class mgui.geometry.mesh.MeshTriangle
- getOppositeNode(MeshEdge, MeshTriangle) - Method in class mgui.geometry.mesh.MeshEdgeSet
-
Get the vertex index (i.e., in the source mesh) of the vertex opposite to
triangle, which is joined atedge. - getOppositeTri(int, int) - Method in class mgui.geometry.mesh.MeshEdgeSet
-
Get the triangle opposite to triangle at
face_idx, which is joined atedge. - getOppositeTri(MeshEdge, MeshTriangle) - Method in class mgui.geometry.mesh.MeshEdgeSet
-
Get the triangle opposite to
face, which is joined atedge. - getOppositeTriIndex(int, int) - Method in class mgui.geometry.mesh.MeshEdgeSet
-
Get the triangle index (i.e., in this set) of the triangle opposite to triangle at
face_idx, which is joined atedge. - getOppPt() - Method in class mgui.geometry.Box3D
- getOpString() - Method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
- getOptimalSubmesh(Mesh3D, ArrayList<MguiInteger>) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns the optimal submesh defined by the connect ring
ring. - getOptimizedSphereMesh(Point3f, float, int, double, long, float) - Static method in class mgui.geometry.mesh.MeshFunctions
- getOptions() - Method in class mgui.interfaces.InterfaceOptionsDialogBox
- getOptions() - Method in class mgui.interfaces.tools.dialogs.DialogToolDialogBox
- getOptions() - Method in class mgui.io.domestic.shapes.VolumeInputDialogBox
- getOptions() - Method in class mgui.io.FileLoader
- getOptions() - Method in class mgui.io.FileWriter
- getOptions() - Method in interface mgui.io.InterfaceIO
-
Gets the
InterfaceIOOptionsspecifying this I/O operation, if options have been set; otherwise returnsnull. - getOptionsInstance() - Method in class mgui.interfaces.io.InterfaceIOType
-
Returns an instance of
InterfaceIOOptionsappropriate for this IO type. - getOptionsInstance() - Method in class mgui.interfaces.plots.InterfacePlot
-
Returns an instance of
InterfacePlotOptionswith which to specify this plot object. - getOptionsInstance() - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlot
- getOptionsInstance() - Method in class mgui.interfaces.plots.sgt.SgtScatterplot
- getOrderedA() - Method in class mgui.morph.sections.MappedPolygon2D
- getOrderedB() - Method in class mgui.morph.sections.MappedPolygon2D
- getOrderedGroup() - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
- getOrigin() - Method in class mgui.geometry.Grid3D
-
Returns the origin of this grid.
- getOrigin() - Method in class mgui.geometry.Plane3D
- getOrigin() - Method in class mgui.geometry.Rect3D
- getOrigin() - Method in class mgui.interfaces.plots.sgt.SgtAxis
-
Returns the origin of this axis, which depends on its range and its position.
- getOrigin() - Method in interface mgui.interfaces.shapes.volume.VolumeMetadata
-
The geometric origin of the volume as a
Point3f. - getOrigin() - Method in class mgui.io.foreign.fsl.FSLVolumeMetadata
- getOrigin() - Method in class mgui.io.foreign.wunil.WunilDataset
- getOrigin() - Method in class mgui.io.standard.nifti.NiftiMetadata
- getOrthogonalPlane(Plane3D, LineSegment3D) - Method in class mgui.geometry.util.GeometryFunctions
-
Returns a plane which is orthogonal to
plane, with a y-axis defined byline. - getOrthogonalRegressionPlane(ArrayList<Point3f>) - Static method in class mgui.geometry.util.GeometryFunctions
-
Calculates and returns the orthogonal distance regression ("best-fit") plane for a set of points in R3.
- getOsType() - Static method in class mgui.interfaces.InterfaceEnvironment
- getOtherWindow(InterfaceGraphicWindow) - Method in class mgui.interfaces.InterfaceSplitPanel
-
Returns the window that is not
window, if one exists. - getOutput() - Method in interface mgui.models.dynamic.DynamicModelOutputEvent
- getOutput() - Method in class mgui.neuro.components.cortical.AbstractCorticalRegion
- getOutput() - Method in class mgui.neuro.components.cortical.functions.BiexponentialFunction
- getOutput() - Method in class mgui.neuro.components.cortical.functions.CorticalFunction
- getOutput() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getOutput() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalConnectionEvent
- getOutput() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalOutput
- getOutput() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalOutputEvent
- getOutput() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
- getOutput() - Method in class mgui.neuro.components.simple.SimpleAxon
- getOutput() - Method in class mgui.neuro.components.simple.SimpleMotorNeuron
- getOutput() - Method in class mgui.neuro.components.simple.SimpleMotorNeuronEvent
- getOutput() - Method in class mgui.neuro.components.simple.SimpleSoma
- getOutputArgs(String[], String) - Method in class mgui.pipelines.JavaProcess
- getOutputArgs(String[], String) - Method in class mgui.pipelines.NativeProcess
- getOutputArgs(String[], String) - Method in class mgui.pipelines.PipelineProcess
-
Alters an argument array to set an output file for this process, and returns the result.
- getOutputDir() - Method in class mgui.io.foreign.caret.CaretSurfaceOutOptions
- getOutputFile() - Method in class mgui.pipelines.PipelineProcessInstance
-
Returns the path of the output file associated with this process.
- getOutputParameter() - Method in class mgui.pipelines.PipelineProcess
-
Sets the parameter which is used to determine the output file for this process.
- getOutputString() - Method in class mgui.pipelines.PipelineProcessInstance
-
Returns the path of the output file associated with this process.
- getOutputType() - Method in class mgui.io.domestic.datasources.ExportDataTableDialogBox
-
Returns the current output type.
- getOverlayImage(ArrayList<BufferedImage>, WindowedColourModel) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Compiles an overlay from the list of images by adding them one-by-one starting from the last element (since this will be on the bottom).
- getPageCount() - Method in class mgui.interfaces.layouts.LayoutDocument
-
Returns the number of printable pages in this document.
- getPageFormat() - Method in class mgui.interfaces.layouts.LayoutDocument
-
Returns this document's page format (size and orientation)
- getPanel() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
- getPanel() - Method in class mgui.interfaces.InterfaceSplitPanel
- getPanelNodes() - Method in class mgui.interfaces.InterfaceDisplayPanel
- getPanels() - Method in class mgui.interfaces.InterfaceComboPanel
- getPanels() - Method in class mgui.interfaces.InterfaceDisplayPanel
-
Deprecated.
- getPanels() - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
- getParameter(String) - Method in class au.edu.unsw.cse.Applet3d
- getParameter(String) - Method in class au.edu.unsw.cse.FakeAppletStub
- getParameter(String) - Method in class mgui.pipelines.PipelineProcess
- getParameter(String) - Method in class mgui.pipelines.PipelineProcessInstance
-
Returns the parameter instance for the specified name.
- getParameterFont() - Method in class mgui.interfaces.pipelines.trees.PipelineTree
- getParameterInfo() - Method in class au.edu.unsw.cse.Applet3d
- getParameters() - Method in class mgui.interfaces.projects.util.ConsolidateDirectoriesDialogBox
- getParameters() - Method in class mgui.pipelines.PipelineProcess
- getParameters() - Method in class mgui.pipelines.PipelineProcessInstance
- getParameters(String[]) - Static method in class mgui.command.CommandInterpreter
-
Extracts parameters from a list of arguments, such that a parameter is specified by a dash.
- getParent() - Method in class mgui.neuro.components.AbstractNeuronalComponent
- getParent() - Method in class mgui.neuro.components.compartments.NeuronalCompartmentalComponent
- getParent() - Method in interface mgui.neuro.components.NeuronalComponent
- getParent(InterfaceGraphicWindow) - Method in class mgui.interfaces.InterfaceSplitPanel
-
Returns the parent panel of
window.InterfaceSplitPanel - getParent2D() - Method in class mgui.interfaces.shapes.Shape3DInt
- getParentAttribute(String) - Method in class mgui.interfaces.shapes.InterfaceShape
- getParentAttribute(String) - Method in class mgui.interfaces.shapes.Shape2DInt
- getParentAttribute(String) - Method in class mgui.interfaces.shapes.Shape3DInt
- getParentFrame() - Method in class mgui.interfaces.InterfaceDisplayPanel
- getParentNode() - Method in class mgui.interfaces.trees.TreeEvent
- getParentPanel() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
- getParentPath() - Method in class mgui.interfaces.projects.ProjectDirectory
- getParentPath(String) - Static method in class mgui.io.util.IoFunctions
-
Returns the path to the parent directory of the file or directory specified by
path. - getParentSet() - Method in class mgui.interfaces.shapes.InterfaceShape
- getParentShape() - Method in class mgui.interfaces.shapes.Shape2DInt
- getParentShape(InterfaceTreeNode) - Method in class mgui.interfaces.trees.InterfaceTreePanel
- getParentTree() - Method in class mgui.interfaces.trees.InterfaceTreeNode
- getPart(int, int) - Method in class mgui.interfaces.variables.VectorInt
-
Returns a part of this vector, between and including indices
startandend. - getPart(int, int, int, int) - Method in class mgui.interfaces.variables.MatrixInt
-
Returns a sub-matrix of this matrix, defined by start and end indices.
- getPart(String) - Method in class mgui.interfaces.variables.VariableInt
-
Parses
partto return a part of this variable. - getPart(String, int, int) - Method in class mgui.interfaces.variables.StringVectorInt
-
Returns a part of this vector, between and including indices
startandend. - getPart(String, int, int) - Method in class mgui.interfaces.variables.VectorInt
-
Returns a part of this vector, between and including indices
startandend. - getPart(String, int, int, int, int) - Method in class mgui.interfaces.variables.MatrixInt
-
Returns a sub-matrix of this matrix, defined by start and end indices, with the given name.
- getPart(String, String) - Method in class mgui.interfaces.variables.MatrixInt
-
Parses
partto return a sub-matrix. - getPart(String, String) - Method in class mgui.interfaces.variables.StringVectorInt
- getPart(String, String) - Method in class mgui.interfaces.variables.VariableInt
-
Parses
partto return a part of this variable. - getPart(String, String) - Method in class mgui.interfaces.variables.VectorInt
- getParticles(Mesh3D, int) - Static method in class mgui.geometry.mesh.MeshSmoothing
- getParticles(Mesh3D, int, boolean[]) - Static method in class mgui.geometry.mesh.MeshSmoothing
- getPassword() - Method in class mgui.datasources.DataConnection
-
Returns the password for this connection.
- getPassword() - Method in class mgui.datasources.DataSourceDriver
- getPath() - Method in class mgui.interfaces.projects.ProjectDirectory
- getPath() - Method in class mgui.pipelines.NativeProcess
-
Returns the path to the native binaries for this process.
- getPaths() - Method in class mgui.io.standard.xml.svg.SVGParser
- getPatternFilter(String) - Static method in class mgui.io.util.IoFunctions
-
Contains
pattern - getPatternFilter(String, String) - Static method in class mgui.io.util.IoFunctions
- getPatterns() - Method in class mgui.io.util.WildcardFileFilter
- getPearsonCoefficient(ArrayList<Double>, ArrayList<Double>) - Static method in class mgui.stats.StatFunctions
- getPercentileValue(double) - Method in class mgui.stats.Histogram
-
Returns the value corresponding to the specified percentile
- getPerimeter() - Method in class mgui.geometry.Polygon3D
- getPhi() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getPickCanvasGeom() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getPickCanvasNode() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getPickedShape(PickCanvas, PickCanvas, Point, MguiInteger) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
-
Return the shape picked by a mouse click at the screen location defined by
click_point. - getPickShapes(Point) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
-
Return a list of PickInfoShape2D objects containing information about the shapes intersecting
point. - getPickShapes(Point) - Method in interface mgui.interfaces.shapes.ShapePanel2D
-
Searches the currently displayed shapes for an intersection with
point. - getPickTolerance() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getPipeline() - Method in class mgui.pipelines.DynamicPipelineEvent
- getPipeline() - Method in class mgui.pipelines.InterfacePipeline
- getPipeline() - Method in class mgui.pipelines.PipelineFork
- getPipeline() - Method in class mgui.pipelines.PipelineProcessInstance
- getPipeline() - Method in class mgui.pipelines.PipelineTask
- getPipeline(String) - Method in class mgui.interfaces.InterfaceWorkspace
-
Returns the pipeline with the given name.
- getPipelineIndex(InterfacePipeline) - Method in class mgui.pipelines.PipelineFork
- getPipelineMenu() - Method in class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree
- getPipelineMenu() - Method in class mgui.interfaces.pipelines.trees.PipelineTree
- getPipelineProcess(String) - Static method in class mgui.interfaces.InterfaceEnvironment
-
Gets a specific pipeline process with the compound name
compound_name, of the form [library_name].[process_name]. - getPipelineProcess(String, String) - Static method in class mgui.interfaces.InterfaceEnvironment
-
Gets a specific pipeline process with the name
process_namefrom the librarylibrary_name. - getPipelineProcessLibraries() - Static method in class mgui.interfaces.InterfaceEnvironment
-
Gets a list of all registered pipeline process libraries.
- getPipelineProcessLibrary(String) - Static method in class mgui.interfaces.InterfaceEnvironment
-
Returns the pipeline process library with the given name.
- getPipelines() - Method in class mgui.interfaces.InterfaceWorkspace
-
Returns a list of the pipelines contained in this workspace.
- getPipelines() - Method in class mgui.io.domestic.pipelines.PipelineXMLHandler
-
Returns a list of the pipelines loaded from XML.
- getPipelines() - Method in class mgui.pipelines.PipelineFork
- getPipelinesNode() - Method in class mgui.interfaces.InterfaceWorkspace
- getPipelineTreeLabel() - Method in class mgui.pipelines.PipelineProcessInstance
- getPipelineTreeLabel() - Method in class mgui.pipelines.PipelineTask
- getPipelineTreeLabel() - Method in class mgui.pipelines.TaskParameterInstance
- getPixel(int, int, int[], DataBuffer) - Method in class mgui.interfaces.shapes.util.GridSampleModel
-
Returns all samples for the specified pixel in an int array.
- getPixels(int, int, int, int, int[], DataBuffer) - Method in class mgui.interfaces.shapes.util.GridSampleModel
-
Returns all samples for the specified rectangle of pixels in an int array, one sample per data array element.
- getPlane() - Method in class mgui.geometry.Triangle3D
- getPlane(Triangle3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns a plane containing
tri. - getPlane3D() - Static method in class mgui.interfaces.shapes.util.Plane3DDialog
-
Shows a dialog box to specify a plane.
- getPlane3D(Plane3D) - Static method in class mgui.interfaces.shapes.util.Plane3DDialog
-
Shows a dialog box to change the current plane.
- getPlaneAt(int) - Method in class mgui.interfaces.shapes.SectionSet3DInt
-
Return the plane corresponding to the specified section
- getPlaneEquation(Point3f, Vector3f) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns a plane equation as a vector {a, b, c, d}, given
p, a point in the plane, andnormal, its normal vector. - getPlaneFromNormalAndY(Point3f, Vector3f) - Static method in class mgui.geometry.Plane3D
-
Return a plane containing point
x0, having normalnormal, and having a Y axis which is (0, 1, 0) projected onto the plane. - getPlaneFromNormalAndY(Point3f, Vector3f, Vector3f) - Static method in class mgui.geometry.Plane3D
-
Return a plane containing point
x0, having normalnormal, and having a Y axis which isYprojected onto the plane. - getPlot() - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog
- getPlot() - Method in class mgui.interfaces.plots.sgt.SgtPlotEvent
- getPlot() - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
- getPlot() - Method in class mgui.interfaces.plots.sgt.SgtScatterPlotDialog
- getPlotDialog() - Method in class mgui.interfaces.plots.InterfacePlot
-
Subclasses can use this method to supply a dialog box which defines this plot object.
- getPlotDialog() - Method in class mgui.interfaces.plots.InterfacePlotMulti
- getPlotDialog() - Method in class mgui.interfaces.plots.osp.InterfaceStripChart
- getPlotDialog() - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlot
- getPlotDialog() - Method in class mgui.interfaces.plots.sgt.SgtScatterplot
- getPlots() - Method in class mgui.interfaces.InterfaceWorkspace
- getPlotType() - Method in class mgui.interfaces.plots.InterfacePlot
- getPlotType() - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlot
- getPlotType() - Method in class mgui.interfaces.plots.sgt.SgtScatterplot
- getPlugins() - Method in class mgui.interfaces.tools.graphs.ToolGraph
- getPngFileFilter() - Static method in class mgui.util.ImageFunctions
- getPoint() - Method in class mgui.geometry.util.K3DBinaryTree.K3DNode
- getPoint() - Method in class mgui.interfaces.shapes.Point2DInt
- getPoint() - Method in class mgui.interfaces.tools.ToolInputEvent
- getPoint2f(String) - Static method in class mgui.interfaces.xml.XMLFunctions
- getPoint2fList(String) - Static method in class mgui.interfaces.xml.XMLFunctions
-
Parses
sfor '\t' and '\n' characters into a list of 2D points - getPoint2fStr(Point2f, String) - Static method in class mgui.numbers.NumberFunctions
- getPoint3d(String) - Static method in class mgui.interfaces.xml.XMLFunctions
- getPoint3dFromMatrix(Matrix) - Static method in class mgui.util.MathFunctions
- getPoint3dStr(Point3d, String) - Static method in class mgui.numbers.NumberFunctions
- getPoint3f(FloatTuple) - Method in class mgui.io.foreign.wavefront.WavefrontSurfaceLoader
- getPoint3f(String) - Static method in class mgui.interfaces.xml.XMLFunctions
- getPoint3fComp() - Static method in class mgui.geometry.util.GeometryFunctions
- getPointFromPlane(Point2f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Return a 3D Cartesian coordinate for the specified 2D point in a plane parallel to
plane. - getPointFromSection(Plane3D, float, Point2f) - Static method in class mgui.geometry.util.GeometryFunctions
-
Return a 3D Cartesian coordinate for the specified 2D point in a plane parallel to refPlane, and separated from it by
along its normal vector. - getPointFromSection(Point2f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Deprecated.Use getPointFromPlane
- getPoints() - Method in class au.edu.unsw.cse.Edge3dPlus
-
return list of points associated with this triangle
- getPoints() - Method in class au.edu.unsw.cse.Triangle3dPlus
-
return list of points associated with this triangle
- getPointSet() - Method in class mgui.interfaces.shapes.PointSet2DInt
- getPointSet() - Method in class mgui.interfaces.shapes.PointSet3DInt
- getPointsFromPlane(ArrayList<Point2f>, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Return a set of 3D Cartesian coordinates for the specified 2D points in a plane parallel to
plane. - getPolygon() - Method in class mgui.interfaces.shapes.Polygon2DInt
- getPolygon() - Method in class mgui.interfaces.shapes.Polygon3DInt
- getPolygonAngles(Polygon3D) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
-
Returns a list of angles corresponding to the nodes of
polygon. - getPolygonDistances(ArrayList<Polygon2D>, ArrayList<Polygon2D>) - Method in class mgui.morph.sections.MorphEngine
- getPolygonFromPlane(Polygon2D, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns a 3D polygon which is the representation of a 2D polygon expressed on the given plane.
- getPolygonNode(int) - Method in class mgui.morph.sections.RadialRep2D
- getPolygonNode(int) - Method in class mgui.morph.sections.RadialRep2DInt
- getPolygonNode(LPolygon3DInt) - Method in class mgui.interfaces.shapes.PolygonSet3DInt
- getPolygonNodeLabels() - Method in class mgui.morph.sections.RadialRep2DInt
- getPolygonOffset() - Method in class mgui.interfaces.shapes.Mesh3DInt
- getPolygonOffsetFactor() - Method in class mgui.interfaces.shapes.Mesh3DInt
- getPolygons() - Method in class mgui.morph.sections.MappedPolygon2DPath
- getPolygonSet(SectionSet3DInt) - Method in class mgui.morph.sections.MorphEngine
- getPopupLength() - Method in class mgui.interfaces.graphics.InterfaceGraphic
- getPopupLength() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
- getPopupLength() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
- getPopupLength() - Method in class mgui.interfaces.plots.InterfacePlotDisplay
- getPopupLength() - Method in class mgui.interfaces.tables.InterfaceDataTable
- getPopupMenu() - Method in class mgui.datasources.DataQuery
- getPopupMenu() - Method in class mgui.datasources.DataSource
- getPopupMenu() - Method in class mgui.datasources.DataTable
- getPopupMenu() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
- getPopupMenu() - Method in class mgui.interfaces.graphics.InterfaceGraphic
- getPopupMenu() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
- getPopupMenu() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getPopupMenu() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
- getPopupMenu() - Method in class mgui.interfaces.graphs.DefaultGraph
- getPopupMenu() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
- getPopupMenu() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
- getPopupMenu() - Method in class mgui.interfaces.InterfaceDisplayPanel
- getPopupMenu() - Method in class mgui.interfaces.InterfacePanel
- getPopupMenu() - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
- getPopupMenu() - Method in class mgui.interfaces.layouts.CategoryTitle
- getPopupMenu() - Method in class mgui.interfaces.maps.ContinuousColourBar
- getPopupMenu() - Method in interface mgui.interfaces.menus.PopupMenuObject
-
Produces and returns a popup menu for this object.
- getPopupMenu() - Method in class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree
- getPopupMenu() - Method in class mgui.interfaces.pipelines.trees.PipelineTree
- getPopupMenu() - Method in class mgui.interfaces.plots.InterfacePlotDisplay
- getPopupMenu() - Method in class mgui.interfaces.projects.InterfaceProject
- getPopupMenu() - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
- getPopupMenu() - Method in class mgui.interfaces.shapes.InterfaceShape
- getPopupMenu() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
- getPopupMenu() - Method in class mgui.interfaces.shapes.Shape2DInt
- getPopupMenu() - Method in class mgui.interfaces.shapes.ShapeModel3D
- getPopupMenu() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
- getPopupMenu() - Method in class mgui.interfaces.shapes.trees.Shape2DTreeNode
- getPopupMenu() - Method in class mgui.interfaces.shapes.trees.Shape3DTreeNode
- getPopupMenu() - Method in class mgui.interfaces.shapes.VertexDataColumn
- getPopupMenu() - Method in class mgui.interfaces.tables.InterfaceDataTable
- getPopupMenu() - Method in class mgui.interfaces.tools.dialogs.DialogTool
- getPopupMenu() - Method in class mgui.interfaces.tools.graphics.Tool2D
- getPopupMenu() - Method in class mgui.interfaces.tools.graphics.Tool3D
- getPopupMenu() - Method in class mgui.interfaces.tools.graphs.ToolGraph
- getPopupMenu() - Method in class mgui.interfaces.tools.graphs.ToolGraphTransform
- getPopupMenu() - Method in class mgui.interfaces.trees.InterfaceTreeNode
- getPopupMenu(MouseEvent) - Method in class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree
- getPopupMenu(MouseEvent) - Method in class mgui.interfaces.pipelines.trees.PipelineTree
- getPopupMenu(MouseEvent) - Method in class mgui.interfaces.trees.InterfaceTreePanel
- getPopupMenu(List<Object>) - Method in class mgui.datasources.DataQuery
- getPopupMenu(List<Object>) - Method in class mgui.datasources.DataSource
- getPopupMenu(List<Object>) - Method in class mgui.datasources.DataTable
- getPopupMenu(List<Object>) - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
- getPopupMenu(List<Object>) - Method in class mgui.interfaces.InterfacePanel
- getPopupMenu(List<Object>) - Method in class mgui.interfaces.layouts.CategoryTitle
- getPopupMenu(List<Object>) - Method in interface mgui.interfaces.menus.PopupMenuObject
-
Produces and returns a popup menu for this object.
- getPopupMenu(List<Object>) - Method in class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree
- getPopupMenu(List<Object>) - Method in class mgui.interfaces.pipelines.trees.PipelineTree
- getPopupMenu(List<Object>) - Method in class mgui.interfaces.projects.InterfaceProject
- getPopupMenu(List<Object>) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
- getPopupMenu(List<Object>) - Method in class mgui.interfaces.shapes.Shape2DInt
- getPopupMenu(List<Object>) - Method in class mgui.interfaces.shapes.Shape3DInt
-
Subclasses should override this if necessary and call super.getPopupMenu() to get this top-level menu and add items to it.
- getPopupMenu(List<Object>) - Method in class mgui.interfaces.shapes.ShapeModel3D
- getPopupMenu(List<Object>) - Method in class mgui.interfaces.shapes.VertexDataColumn
- getPopupMenu(List<Object>) - Method in class mgui.interfaces.tools.dialogs.DialogTool
- getPopupMenu(List<Object>) - Method in class mgui.interfaces.tools.graphics.Tool2D
- getPopupMenu(List<Object>) - Method in class mgui.interfaces.tools.graphics.Tool3D
- getPopupMenu(List<Object>) - Method in class mgui.interfaces.tools.graphs.ToolGraph
- getPopupMenu(List<Object>) - Method in class mgui.interfaces.trees.InterfaceTreeNode
- getPopupMenuLength() - Method in class mgui.interfaces.shapes.Shape3DInt
- getPopupSize() - Method in class mgui.interfaces.gui.InterfaceComboBox
- getPosition() - Method in class mgui.interfaces.plots.sgt.SgtAxis
-
Returns the position of this axis, relative to the graph.
- getPowerOfTwo(int) - Static method in class mgui.util.ImageFunctions
- getPowerOfTwoImage(BufferedImage, double, int) - Static method in class mgui.util.ImageFunctions
-
Returns a power-of-two dimensioned version of
image, with its boundaries filled withfiller. - getPreCache() - Method in class mgui.interfaces.tables.InterfaceDataTable
- getPreferredSize() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
-
Overrides
JComponent.getPreferredSizeto return slightly wider preferred size value. - getPreferredSize() - Method in class mgui.interfaces.shapes.util.StrokeSample
-
Returns the preferred size of the component.
- getPreferredSize(JComponent) - Method in class mgui.interfaces.util.VerticalLabelUI
- getPrev() - Method in class mgui.morph.sections.MorphNodeMap2D
- getPreviousTool() - Method in class mgui.interfaces.tools.datasources.ToolDataSource
- getPreviousTool() - Method in class mgui.interfaces.tools.dialogs.DialogTool
- getPreviousTool() - Method in class mgui.interfaces.tools.graphics.Tool2D
- getPreviousTool() - Method in class mgui.interfaces.tools.graphics.Tool3D
- getPreviousTool() - Method in class mgui.interfaces.tools.graphs.ToolGraph
- getPreviousTool() - Method in class mgui.interfaces.tools.plots.ToolPlot
- getPreviousTool() - Method in interface mgui.interfaces.tools.Tool
-
Returns the tool that was set previous to this one, if one exists
- getPreviousValue() - Method in class mgui.pipelines.StaticPipelineEvent
- getPrevVertex(int) - Method in class mgui.geometry.Polygon2D
- getPrimaryKeys() - Method in class mgui.datasources.DataTable
-
Returns a list of the primary keys in this table
- getProcess() - Method in class mgui.interfaces.neuro.imaging.camino.CaminoTaskDialogBox
- getProcess() - Method in class mgui.interfaces.pipelines.PipelineProcessInstanceDialogBox
- getProcess() - Method in class mgui.pipelines.PipelineProcessInstance
-
Returns the process of which this is an instance.
- getProcess(String) - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
- getProcess(String) - Static method in class mgui.neuro.imaging.camino.CaminoEnvironment
- getProcess(String) - Static method in class mgui.neuro.imaging.camino.CaminoProcesses
- getProcesses() - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
- getProcesses() - Static method in class mgui.neuro.imaging.camino.CaminoEnvironment
- getProcesses() - Static method in class mgui.neuro.imaging.camino.CaminoProcesses
- getProcesses(String) - Static method in class mgui.interfaces.InterfaceEnvironment
-
Returns a list of processes contained in the given library.
- getProcessMenu() - Method in class mgui.interfaces.pipelines.trees.PipelineTree
- getProcessState(int) - Static method in class mgui.command.CommandFunctions
-
Returns the
ProcessStatecorresponding to the system exit value. - getProduct(MguiNumber, MguiNumber) - Static method in class mgui.numbers.NumberFunctions
- getProgressBar() - Method in class mgui.interfaces.gui.InterfaceProgressBar
-
Returns the instance of
JProgressBarused to render this panel. - getProgressMessage() - Method in class mgui.io.FileLoader
-
Returns a message for the progress updater, while loading is in progress.
- getProgressMessage() - Method in class mgui.io.FileWriter
- getProgressMessage() - Method in interface mgui.io.InterfaceIO
- getProject() - Method in class mgui.io.foreign.camino.xml.CaminoProjectXMLHandler
- getProject(String) - Method in class mgui.interfaces.InterfaceWorkspace
- getProjectDir() - Method in class mgui.interfaces.projects.InterfaceProject
- getProjectedPoint(Point3d, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Project point
ptonto planeplane, alongplane's normal vector. - getProjectedPoint(Point3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Project point
ptonto planeplane, alongplane's normal vector. - getProjectedPoint(Point3f, Plane3D) - Method in class mgui.interfaces.graphs.layouts.CoordinateLayout
- getProjectedPoint(Point3f, Plane3D) - Method in class mgui.interfaces.shapes.graphs.util.Graph2DLayout
- getProjectedPoint(Point3f, Vector3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Project point
ptonto planeplane, alongplane's normal vector. - getProjectedPoint3D(Point3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Project point
ptonto planeplane, alongplane's normal vector. - getProjectedPoint3D(Point3f, Vector3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Project point
ptonto planeplane, along vectorv. - getProjectedPolygon(Polygon3D, Plane3D, float, float) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
-
Returns a 2D polygon in section coordinates representing the projection of
polygonontoplane, within the specified clipping distances. - getProjectedPolygon(Polygon3D, Plane3D, float, float, VertexDataColumn) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
-
Returns a 2D polygon in section coordinates representing the projection of
polygonontoplane, within the specified clipping distances. - getProjectedPolygon_bak(Polygon3D, Plane3D, float, float, VertexDataColumn) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
-
Returns a 2D polygon in section coordinates representing the projection of
polygonontoplane, within the specified clipping distances. - getProjectedToPlane(ArrayList<Point3f>, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Projects
nodesontoplaneand returns the 2D points. - getProjectedToPlane(Triangle3D, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Projects
triontoplaneand returns the 2D triangle. - getProjectedToPlane(Vector3f, Vector3f) - Static method in class mgui.geometry.util.GeometryFunctions
-
Projects
vectoronto a plane with normalnormal. - getProjectedToPlane2D(Vector3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Projects
vectoronto planeplanealong its normal. - getProjectedToPlane2D(Vector3f, Vector3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Projects
vectoronto planeplanealong its normal. - getProjectedVector(Mesh3D, MeshSmoothing.Particle) - Static method in class mgui.geometry.mesh.MeshSmoothing
-
Get the projection of this particle's charge vector onto the mesh surface.
- getProjectedVector(Mesh3D, MeshSmoothing.Particle, boolean) - Static method in class mgui.geometry.mesh.MeshSmoothing
-
Get the projection of this particle's charge vector onto the mesh surface.
- getProjectedVector(Vector3f, Vector3f) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns the projection of v onto u.
- getProjectionPlane() - Method in class mgui.interfaces.graphs.layouts.CoordinateLayout
- getProjectionPlane() - Method in class mgui.interfaces.shapes.graphs.util.Graph2DLayout
- getProjects() - Method in class mgui.interfaces.InterfaceWorkspace
- getProjectsNode() - Method in class mgui.interfaces.InterfaceWorkspace
- getProperties() - Method in class mgui.interfaces.queries.QueryResult
-
Returns a list of the properties stored in this result, in the same order as they were added
- getPropertyListener() - Method in interface mgui.interfaces.graphics.GraphicPropertyListener
- getPropertyListener() - Method in class mgui.interfaces.graphics.InterfaceGraphic2DTextBox
- getPropertyListener() - Method in class mgui.interfaces.graphics.InterfaceGraphicTextBox
- getPROTO(String) - Method in class au.edu.unsw.cse.VRMLState
- getProximity(Point2f) - Method in class mgui.geometry.LineSegment2D
- getProximity(Point2f) - Method in class mgui.geometry.Polygon2D
- getProximity(Point2f) - Method in class mgui.geometry.Shape2D
- getProximity(Point2f) - Method in class mgui.interfaces.shapes.Shape2DInt
- getProximity(Point3d) - Method in class mgui.interfaces.shapes.Shape3DInt
- getProximity(Point3f) - Method in class mgui.geometry.Shape3D
-
Determines the proximity of
pointto this shape. - getProximityPoint(Point2f) - Method in class mgui.geometry.LineSegment2D
- getProximityPoint(Point2f) - Method in class mgui.geometry.Polygon2D
- getProximityPoint(Point2f) - Method in class mgui.geometry.Shape2D
- getProximityPoint(Point3f) - Method in class mgui.geometry.Shape3D
-
Returns the point on this shape which is closest to
point. - getQ_V_max() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getQ_Z_max() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getQuaternion(Vector3d, double) - Static method in class mgui.geometry.util.GeometryFunctions
- getQueries() - Method in class mgui.interfaces.InterfaceWorkspace
- getQueriesNode() - Method in class mgui.interfaces.InterfaceWorkspace
- getQuery() - Method in class mgui.interfaces.queries.QueryEvent
- getQuery() - Method in interface mgui.interfaces.tools.queries.QueryTool
- getQuery() - Method in class mgui.interfaces.tools.shapes.ToolQueryShape2D
- getQuery() - Method in class mgui.interfaces.tools.shapes.ToolQueryShape3D
- getQueryMode() - Method in class mgui.interfaces.InterfaceSelectionPanel
- getQueryMode() - Method in class mgui.interfaces.queries.InterfaceQueryPanel
- getQuotient(MguiNumber, MguiNumber) - Static method in class mgui.numbers.NumberFunctions
- getR(int, int) - Static method in class mgui.util.Colours
- getR_NMDA() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getRa() - Method in class mgui.neuro.components.compartments.CompartmentalDendrite
- getRadialNode(int) - Method in class mgui.morph.sections.RadialRep2D
- getRadialNodesCopy() - Method in class mgui.morph.sections.ConstrainedRadialRepresentation
- getRadiusAtNode(int) - Method in class mgui.morph.sections.RadialRep2D
- getRadToDeg(double) - Static method in class mgui.geometry.util.GeometryFunctions
-
Converts radians to degrees.
- getRandom() - Static method in class mgui.util.Colours
- getRandom600() - Static method in class mgui.interfaces.maps.DiscreteColourMap
- getRange() - Method in class mgui.interfaces.plots.sgt.SgtAxis
-
Returns the X axis range, from a string of the form
- getRangeX() - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout
-
Returns the X axis range, from a string of the form
- getRangeY() - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout
-
Returns the Y axis range, from a string of the form
- getRate() - Method in class mgui.models.updaters.PulseTrainUpdater
- getRate() - Method in class mgui.neuro.updaters.PulseTrainUpdater
- getRate(double[], double[]) - Method in class mgui.neuro.components.AbstractNeuroComponent
- getRate(double[], double[]) - Method in class mgui.neuro.components.compartments.AbstractCompartment
- getRate(double[], double[]) - Method in class mgui.neuro.components.compartments.SimpleCompartment
- getRate(double[], double[]) - Method in class mgui.neuro.components.cortical.functions.CorticalFunction
- getRAxis() - Method in class mgui.geometry.Box3D
-
Returns a copy of this box's R-axis (analogous to Z-axis).
- getRay() - Method in class mgui.geometry.neuro.mesh.SampleRay
- getRayControlPoints(ArrayList<SampleRay>) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
-
Determines a set of control points which can be used to constrain the search for skull and scalp surfaces.
- getRayCurves(ScalpAndSkullModelOptions, String, String) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
- getRayCurves(ScalpAndSkullModelOptions, String, String, ArrayList<ArrayList<Double>>, Mesh3D, ArrayList<Double>) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
- getRayCurvesBak(ScalpAndSkullModelOptions, String, String, ArrayList<ArrayList<Double>>, Mesh3D) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
- getRays(ScalpAndSkullModelOptions, ArrayList<SampleRay>, ArrayList<SampleRay>, ProgressUpdater) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
-
Generates a set of sample rays from an instance of
ScalpAndSkullModelOptions, including a brain hull surface and a T1-weighted brain image. - getRaysBlocking(ScalpAndSkullModelOptions, ArrayList<SampleRay>, ArrayList<SampleRay>, ProgressUpdater) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
-
Generates and fills three sets of sample rays based upon the parameters in
options. - getRDim() - Method in class mgui.geometry.Box3D
-
Returns the geometric size of the z (R) dimension
- getReasonableFormat(double) - Static method in class mgui.numbers.NumberFunctions
- getReasonableString(double) - Static method in class mgui.numbers.NumberFunctions
- getRecordCount() - Method in class mgui.datasources.DataRecordSet
- getRecordCount() - Method in interface mgui.datasources.DataSet
- getRecordSet() - Method in class mgui.interfaces.datasources.DataTableModel
- getRecordSet(DataSourceItem) - Method in class mgui.datasources.DataSource
-
Returns a
DataRecordSetobject accessing the specified table in this data source. - getRect() - Method in class mgui.interfaces.shapes.Rect3DInt
- getRed() - Method in class mgui.util.Colour
- getRed() - Method in class mgui.util.Colour1f
- getRed() - Method in class mgui.util.Colour2f
- getRed() - Method in class mgui.util.Colour3f
- getRed() - Method in class mgui.util.Colour4f
- getRed(int) - Method in class mgui.image.util.WindowedColourModel
- getRed(Object) - Method in class mgui.image.util.WindowedColourModel
- getRedIndex() - Method in class mgui.image.util.WindowedColourModel
- getRefPlane() - Method in class mgui.interfaces.shapes.SectionSet3DInt
-
Gets the reference plane (i.e., at index 0) for this section set.
- getRegexDirFilter(String) - Static method in class mgui.io.util.IoFunctions
-
Matches
patternas a regular expression, returning only directories - getRegexFilter(String) - Static method in class mgui.io.util.IoFunctions
-
Matches
patternas a regular expression - getRegion() - Method in class mgui.neuro.graphs.CorticalNetworkGraphNode
- getRegion(String) - Method in class mgui.io.domestic.network.CorticalNetworkMatrixInOptions
- getRegion(String) - Method in class mgui.neuro.networks.CorticalNetwork
- getRegionBoundaryNodeIndices(Mesh3D, ArrayList<MguiNumber>, int) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns a list of nodes which form the boundary of all regions defined by
value, specified by the vertex-wise listvalues. - getRegression(ArrayList<Double>, ArrayList<Double>) - Static method in class mgui.stats.StatFunctions
-
Returns a
SimpleRegressionobject for the two lists of values. - getRemoveFieldStatement(String, String) - Static method in class mgui.datasources.util.DataSourceFunctions
-
Returns an SQL statement for removing
fieldfromtable. - getRemoveFieldStatement(String, String, DataSourceDriver) - Static method in class mgui.datasources.util.DataSourceFunctions
-
Returns an SQL statement for removing
fieldfromtable. - getRenameFieldStatement(String, String, String) - Static method in class mgui.datasources.util.DataSourceFunctions
-
Returns an SQL statement to rename
old_fieldtonew_field. - getRenameFieldStatement(String, String, String, DataSourceDriver) - Static method in class mgui.datasources.util.DataSourceFunctions
-
Returns an SQL statement to rename
old_fieldtonew_field. - getRenameTableStatement(String, String) - Static method in class mgui.datasources.util.DataSourceFunctions
-
Returns an SQL statement to rename
old_tabletonew_table. - getRenameTableStatement(String, String, DataSourceDriver) - Static method in class mgui.datasources.util.DataSourceFunctions
-
Returns an SQL statement to rename
old_tabletonew_table. - getRenderMode() - Method in class mgui.interfaces.gui.InterfaceComboBoxBak
- getRenderMode() - Method in class mgui.interfaces.shapes.Volume3DInt
-
Returns the current render mode of this volume
- getRenderModes() - Static method in class mgui.interfaces.shapes.volume.Volume3DRenderer
- getRenderModeStr() - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
- getRenderTypes() - Static method in class mgui.interfaces.shapes.paths.PathDataRenderer
- getRepeat() - Method in class mgui.models.updaters.PulseTrainUpdater
- getRepeat() - Method in class mgui.neuro.updaters.PulseTrainUpdater
- getResampledCurve(ArrayList<Double>, int, int) - Static method in class mgui.neuro.stats.SignalProcessing
-
Resample (interpolate with order) curve to specified number of samples.
- getResampledImage(BufferedImage, double, double) - Static method in class mgui.util.ImageFunctions
-
Resamples
image_to_scaleand returns the result - getResampledImage(BufferedImage, int, int) - Static method in class mgui.util.ImageFunctions
-
Resamples
image_to_scaleand returns the result - getRestingV() - Method in class mgui.neuro.components.simple.SimpleDendrite
- getRestingV() - Method in class mgui.neuro.components.simple.SimpleSoma
- getRestingV() - Method in class mgui.neuro.components.simple.SimpleSynapse
- getResult(String) - Method in class mgui.interfaces.queries.InterfaceQuery
-
Returns the result associated with
object, if it exists; returnsnullotherwise. - getResults() - Method in class mgui.interfaces.queries.InterfaceQuery
-
Returns the results stored in this query, in the order they were added.
- getResultSet(String) - Method in class mgui.datasources.DataSource
-
Returns a result set from the given SQL statement.
- getResultTreeNode() - Method in class mgui.interfaces.queries.InterfaceQuery
-
Returns a set of tree nodes containing the results of this query.
- getReversePolygon(Polygon2D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Reverses the direction of this polygon (CW -> CCW or vice versa)
- getRGB(int) - Method in class mgui.image.util.WindowedColourModel
- getRGB(Object) - Method in class mgui.image.util.WindowedColourModel
- getRGBtoRGBA(BufferedImage, boolean, double, double) - Static method in class mgui.util.Colours
- getRGBtoRGBA(BufferedImage, double, double) - Static method in class mgui.util.Colours
- getRm() - Method in class mgui.neuro.components.compartments.CompartmentalDendrite
- getRoiCentroidsBlocking(Volume3DInt, String, int[], int, boolean, String, ProgressUpdater) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Finds the centroids for all ROIs (identified as voxels with the same value).
- getRoiIndices(Mesh3D, ArrayList<MguiNumber>, int) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns a list of indices corresponding to
rois == roi. - getRoiSelection(Mesh3D, ArrayList<MguiNumber>, int) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns a vertex selection corresponding to
rois == roi. - getRoiSubmesh(Mesh3D, ArrayList<MguiNumber>, int) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns a submesh of
meshincluding all vertices corresponding torois == roi. - getRoot() - Method in class mgui.interfaces.trees.AbstractTreeTableModel
- getRootDir() - Method in class mgui.interfaces.projects.InterfaceProject
- getRootDir() - Method in class mgui.io.domestic.shapes.xml.InterfaceShapeXMLHandler
- getRootDir() - Method in class mgui.io.domestic.shapes.xml.ShapeModel3DXMLHandler
- getRootDir() - Method in class mgui.io.domestic.shapes.xml.ShapeSet3DXMLHandler
- getRootDir() - Method in class mgui.pipelines.InterfacePipeline
- getRootDirectory() - Method in class mgui.neuro.imaging.camino.CaminoProject
- getRootFont() - Method in class mgui.interfaces.pipelines.trees.PipelineTree
- getRootMeanSquaredError() - Method in interface mgui.models.dynamic.stats.DynamicModelStatistics
- getRootMeanSquaredError() - Method in class mgui.neuro.stats.SimpleStatistics
- getRootMeanSquaredError(ArrayList<MguiNumber>, ArrayList<MguiNumber>) - Static method in class mgui.stats.StatFunctions
-
Returns the root mean squared error (RMSE) for two lists of values.
- getRotatedBox(Box3D, VolumeFunctions.VolumeAxis, VolumeFunctions.VolumeRotationAngle) - Static method in class mgui.geometry.volume.VolumeFunctions
- getRotatedDims(int[], VolumeFunctions.VolumeAxis, VolumeFunctions.VolumeRotationAngle) - Static method in class mgui.geometry.volume.VolumeFunctions
- getRotatedVector2D(Vector2d, double) - Static method in class mgui.geometry.util.GeometryFunctions
-
Rotates
vectorbyangle, specified in radians. - getRotatedVector2D(Vector2f, double) - Static method in class mgui.geometry.util.GeometryFunctions
-
Rotates
vectorbyangle, specified in radians. - getRotation() - Method in class mgui.geometry.Rect2D
-
Returns a copy of this rectangle's rotation vector.
- getRotation() - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
- getRotationTransform(Vector3d, double) - Static method in class mgui.geometry.util.GeometryFunctions
-
Creates a transformation matrix representing a rotation about
axisbyangleradians. - getRotX() - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
- getRotY() - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
- getRow(int) - Method in class mgui.interfaces.variables.MatrixInt
-
Returns row
rowas aVectorIntobject. - getRow(Matrix, int) - Static method in class mgui.geometry.util.MatrixFunctions
-
Returns
rowas anArrayList. - getRow(String, int) - Method in class mgui.interfaces.variables.MatrixInt
-
Returns row
rowas aVectorIntobject. - getRowCount() - Method in class mgui.interfaces.attributes.table.AttributeTableModel
- getRowCount() - Method in class mgui.interfaces.datasources.DataTableModel
- getRowCount() - Method in class mgui.interfaces.gui.RowNumberTable
- getRowCount() - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog.YTableModel
- getRowCount() - Method in class mgui.interfaces.plots.sgt.SgtScatterPlotDialog.XYTableModel
- getRowCount() - Method in class mgui.interfaces.queries.tables.QueryResultTableModel
- getRowCount() - Method in class mgui.interfaces.shapes.InterfaceShapesPanel.VertexSelectionTableModel
- getRowCount() - Method in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel.OverlayVolumeTableModel
- getRowCount() - Method in class mgui.interfaces.trees.TreeTableModelAdapter
- getRowCount() - Method in class mgui.interfaces.variables.tables.VariableTableModel
- getRowCount() - Method in class mgui.io.domestic.maps.NameMapOutDialogBox.TableModel
- getRowCount() - Method in class mgui.io.domestic.shapes.PointSet2DInputDialogBox.TableModel
- getRowCount() - Method in class mgui.io.domestic.shapes.PointSet3DDataInputDialogBox.TableModel
- getRowCount() - Method in class mgui.io.domestic.shapes.PointSet3DInputDialogBox.TableModel
- getRowCount() - Method in class mgui.io.domestic.shapes.PolygonSet3DInputDialogBox.TableModel
- getRowCount() - Method in class mgui.io.domestic.shapes.ShapeInputDialogBox.TableModel
- getRowCount() - Method in class mgui.io.domestic.shapes.ShapeModel3DOutputDialog.TableModel
- getRowCount() - Method in class mgui.io.domestic.shapes.SurfaceDataInputDialogBox.TableModel
- getRowCount() - Method in class mgui.io.domestic.shapes.SurfaceDataOutputDialogBox.TableModel
- getRowCount() - Method in class mgui.io.domestic.shapes.SurfaceInputDialogBox.TableModel
- getRowCount() - Method in class mgui.io.domestic.shapes.VectorSet3DInputDialogBox.TableModel
- getRowCount() - Method in class mgui.io.domestic.variables.MatrixInDialogBox.TableModel
- getRowHeight(int) - Method in class mgui.interfaces.gui.RowNumberTable
- getRowMaxes(Matrix) - Static method in class mgui.geometry.util.MatrixFunctions
-
Returns the maximums of the rows of M.
- getRowMeans(Matrix) - Static method in class mgui.geometry.util.MatrixFunctions
-
Returns the means of the rows of M.
- getRowMins(Matrix) - Static method in class mgui.geometry.util.MatrixFunctions
-
Returns the minimums of the rows of M.
- getRowSums(Matrix) - Static method in class mgui.geometry.util.MatrixFunctions
-
Returns the sums of the rows of M.
- getRSliceImage(int) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
-
Returns a slice image at the plane R=
r. - getRSliceImage(int, WindowedColourModel) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
-
Returns a slice image at the plane R=
r. - getSample(int) - Method in class mgui.geometry.neuro.mesh.SampleRay
- getSample(int, int, int, DataBuffer) - Method in class mgui.interfaces.shapes.util.GridSampleModel
-
Returns as int the sample in a specified band for the pixel located at (x,y).
- getSampledImage(BufferedImage) - Method in class mgui.interfaces.shapes.VolumeSet3DInt
-
Returns an image having a colour model with type
BufferedImage.TYPE_INT_ARGB, with colours set fromimage's colour model. - getSampleDouble(int, int, int, DataBuffer) - Method in class mgui.interfaces.shapes.util.GridSampleModel
-
Returns the sample in a specified band for a pixel located at (x,y) as a double.
- getSampleFloat(int, int, int, DataBuffer) - Method in class mgui.interfaces.shapes.util.GridSampleModel
-
Returns the sample in a specified band for the pixel located at (x,y) as a float.
- getSamples() - Method in class mgui.geometry.neuro.mesh.SampleRay
- getSamples(int, int, int, int, int, int[], DataBuffer) - Method in class mgui.interfaces.shapes.util.GridSampleModel
-
Returns the samples in a specified band for the specified rectangle of pixels in an int array, one sample per data array element.
- getSAxis() - Method in class mgui.geometry.Box3D
-
Returns a copy of this box's S-axis (analogous to X-axis).
- getScale() - Method in class mgui.image.util.WindowedColourModel
- getScale() - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
- getScaledBasisTransform() - Method in class mgui.geometry.Grid3D
-
Returns a matrix which will transform a vector expressed in world (model) coordinates to one expressed with respect to this box's coordinate space.
- getScaledShape(Point2f, Rect2D, double) - Static method in class mgui.geometry.util.GeometryFunctions
- getScaleX() - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
- getScaleY() - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
- getScene3DNode() - Method in class mgui.interfaces.graphics.util.Axes3D
- getScene3DObject() - Method in class mgui.interfaces.shapes.Shape3DInt
-
Returns a
BranchGrouprepresenting this ShapeInt. - getScene3DObject(ShapeSelectionSet) - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getScene3DObject(ShapeSelectionSet) - Method in class mgui.interfaces.shapes.Shape3DInt
- getScene3DObject(ShapeSelectionSet) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
- getSchema() - Method in class mgui.interfaces.graphics.video.VideoTask
- getScreenBounds(JComponent) - Static method in class mgui.interfaces.graphics.GraphicsFunctions
- getScreenBounds(Rect2D) - Method in class mgui.interfaces.graphics.util.DrawingEngine
-
Returns the screen bounds of
bounds, a 2D rectangular boundary in model space. - getScreenBounds(Rect2D) - Method in class mgui.interfaces.maps.Map2D
- getScreenDist(double) - Method in class mgui.interfaces.graphics.util.DrawingEngine
- getScreenDist(double) - Method in class mgui.interfaces.maps.Map2D
- getScreenPoint(Point2d) - Method in class mgui.interfaces.graphics.util.DrawingEngine
-
Returns the screen coordinate of
point, a 2D location in model space. - getScreenPoint(Point2f) - Method in class mgui.interfaces.graphics.util.DrawingEngine
-
Returns the screen coordinate of
point, a 2D location in model space. - getScreenPoint(Point2f) - Method in class mgui.interfaces.maps.Map2D
-
Maps
pfrom model space to screen space. - getScreenShot(float) - Method in class mgui.interfaces.graphics.InterfaceCanvas3D
- getScreenShot(InterfaceGraphic3D, float) - Method in class mgui.interfaces.graphics.PostRenderingCanvas3D
-
Returns a screen shot created from an offscreen buffer for this canvas.
- getScreenShot(Canvas3D) - Method in class mgui.io.domestic.videos.ImageStackVideoWriter
- getScreenShot_bak3(InterfaceGraphic) - Method in class mgui.io.domestic.videos.ImageStackVideoWriter
- getScreenShot3D(InterfaceGraphic3D) - Method in class mgui.io.domestic.videos.ImageStackVideoWriter
- getScreenShot3D_bak4(InterfaceGraphic3D) - Method in class mgui.io.domestic.videos.ImageStackVideoWriter
- getScreenWidth() - Method in class mgui.interfaces.maps.Map2D
- getSDim() - Method in class mgui.geometry.Box3D
-
Returns the geometric size of the x (S) dimension
- getSection3DShapes(SectionSet3DInt, int) - Method in class mgui.io.standard.xml.svg.SVGFileInterface
- getSectionDist(int) - Method in class mgui.interfaces.shapes.SectionSet3DInt
-
Gets the distance of the section plane at index
ifrom the reference plance (i.e., at index 0). - getSectionDist(int) - Method in class mgui.morph.sections.MorphSections3DInt
- getSectionForShape(Shape2DInt) - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getSectionOf(ShapeSet2DInt) - Method in class mgui.interfaces.shapes.SectionSet3DInt
-
Returns the index of
setin this section set object, if it exists. - getSectionSet() - Method in class mgui.io.domestic.shapes.xml.SectionSet3DXMLHandler
- getSectionWindows() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
- getSegmentLengths(Polygon2D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns a list of the lengths of each segment in
polygon. - getSegmentsIntersect(LineSegment2D, LineSegment2D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines whether line segments
l1andl2intersect. - getSegmentsIntersect(Polygon2D, Polygon2D) - Static method in class mgui.geometry.util.GeometryFunctions
- getSelect() - Method in class au.edu.unsw.cse.VRMLState
- getSelectedAnchor() - Method in class mgui.interfaces.maps.ContinuousColourBar
- getSelectedBackground() - Method in class mgui.interfaces.attributes.tree.AttributeTreeCellEditor
- getSelectedBackground() - Method in class mgui.interfaces.attributes.tree.AttributeTreeCellRenderer
- getSelectedBackground() - Method in class mgui.interfaces.graphs.tree.GraphTreeCellRenderer
- getSelectedBackground() - Method in class mgui.interfaces.shapes.trees.ShapeTreeCellRenderer
- getSelectedColumn() - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
-
Returns the currently selected column, or
nullif no column is selected. - getSelectedCount() - Method in class mgui.interfaces.shapes.mesh.VertexSelection
-
Returns the count of selected vertices
- getSelectedDirectory() - Method in class mgui.interfaces.projects.InterfaceProjectDialogBox
- getSelectedFont() - Method in class mgui.interfaces.gui.FontDialog
- getSelectedIcon() - Method in class mgui.neuro.imaging.camino.CaminoProject
- getSelectedPipeline() - Method in class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree
- getSelectedPipeline() - Method in class mgui.interfaces.pipelines.InterfacePipelinesPanel
- getSelectedPipeline() - Method in class mgui.interfaces.pipelines.trees.PipelineTree
- getSelectedPipelines() - Method in class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree
- getSelectedPipelines() - Method in class mgui.interfaces.pipelines.InterfacePipelinesPanel
- getSelectedPipelines() - Method in class mgui.interfaces.pipelines.trees.PipelineTree
- getSelectedProcessInstance() - Method in class mgui.interfaces.pipelines.InterfacePipelinesPanel
- getSelectedProcessInstance() - Method in class mgui.interfaces.pipelines.trees.PipelineTree
- getSelectedTask() - Method in class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree
- getSelectedTasks() - Method in class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree
- getSelectedTasks() - Method in class mgui.interfaces.pipelines.trees.PipelineTree
- getSelectFrame() - Method in interface au.edu.unsw.cse.Object3d
- getSelectFrame() - Method in class au.edu.unsw.cse.Object3dAdaptor
- getSelectFrame() - Method in class au.edu.unsw.cse.Point3dObject3d
- getSelectionSet(String) - Method in class mgui.interfaces.shapes.ShapeModel3D
- getSelectionSetNode() - Method in class mgui.interfaces.shapes.ShapeModel3D
- getSelectionSets() - Method in class mgui.interfaces.InterfaceWorkspace
-
Returns a list of all selection sets currently in this workspace.
- getSelectionSets() - Method in class mgui.interfaces.shapes.ShapeModel3D
-
Returns a list of this model's selection sets, including its working set.
- getSelectionSets(InterfaceShape) - Method in class mgui.interfaces.shapes.ShapeModel3D
- getSelfIntersections(Mesh3D, float) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns a list of face indices indicating which faces intersect within
mesh. - getSelfIntersections(Mesh3D, float, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions
- getSelfIntersectionsBlocking(Mesh3D, float, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns a list of face indices indicating which faces intersect within
mesh. - getSensors() - Method in interface mgui.models.dynamic.DynamicModel
- getSensors() - Method in class mgui.models.networks.AbstractNetworkModel
- getSeriesReplaced(String, int) - Method in class mgui.interfaces.projects.ProjectDataItem
- getSessionFrame() - Static method in class mgui.interfaces.InterfaceSession
-
Returns the frame for the current session.
- getSetOperator() - Method in class mgui.pipelines.NativeProcess
-
Returns the set operator character for this process.
- getSgtAttribute() - Method in class mgui.interfaces.plots.sgt.SgtPlotObject
-
Returns an SGT attribute object for this object
- getSgtData() - Method in class mgui.interfaces.plots.sgt.SgtPlotObject
-
Returns the SGT data object for this object
- getShape() - Method in class mgui.geometry.util.NodeShape
-
Gets the shape for this node shape, or the first if there are multiple shapes.
- getShape() - Method in class mgui.interfaces.shapes.queries.QueryShapeVertex
- getShape() - Method in class mgui.interfaces.shapes.Shape2DInt
- getShape() - Method in class mgui.interfaces.shapes.Shape3DInt
- getShape() - Method in class mgui.interfaces.shapes.trees.ShapeTreeNode
- getShape() - Method in class mgui.interfaces.shapes.util.ShapeEvent
- getShape() - Method in class mgui.interfaces.shapes.util.ShapeVertexObject
- getShape() - Method in class mgui.io.domestic.shapes.ShapeDataInputOptions
- getShape() - Method in class mgui.io.domestic.shapes.xml.InterfaceShapeXMLHandler
- getShape() - Method in class mgui.morph.sections.RadialRep2DInt
- getShape(int) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
- getShape(int) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
-
Returns the
ith member of this set - getShape(int) - Static method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
- getShape(int) - Method in class mgui.io.domestic.shapes.ShapeOutputOptions
- getShape(String) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
-
Searches this set for a shape named
nameand returns the first instance found. - getShape(String) - Static method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
- getShape(String, boolean) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
-
Searches this set for a shape named
nameand returns the first instance found. - getShape(Shape3D) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
- getShape(Shape3D) - Method in class mgui.interfaces.tools.shapes.ToolSelectShape3D
- getShape2D(Plane3D, float, float) - Method in class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt
- getShape2D(Plane3D, float, float) - Method in class mgui.interfaces.shapes.neuro.CorticalSurfaceSet3DInt
- getShape2D(Plane3D, float, float) - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getShape2D(Plane3D, float, float) - Method in class mgui.interfaces.shapes.Shape3DInt
-
To be overridden by subclasses implementing a 2D representation
- getShape2D(Plane3D, float, float) - Method in class mgui.interfaces.shapes.VectorSet3DInt
- getShape2D(Plane3D, float, float, Matrix4d) - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
- getShape2D(Plane3D, float, float, Matrix4d) - Method in class mgui.interfaces.shapes.Mesh3DInt
- getShape2D(Plane3D, float, float, Matrix4d) - Method in class mgui.interfaces.shapes.PointSet3DInt
- getShape2D(Plane3D, float, float, Matrix4d) - Method in class mgui.interfaces.shapes.Polygon3DInt
- getShape2D(Plane3D, float, float, Matrix4d) - Method in class mgui.interfaces.shapes.Shape3DInt
-
To be overridden by subclasses implementing a 2D representation
- getShape2D(Plane3D, float, float, Matrix4d) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
- getShape2D(Plane3D, float, float, Matrix4d) - Method in class mgui.interfaces.shapes.Vector3DInt
- getShape2D(Plane3D, float, float, Matrix4d) - Method in class mgui.interfaces.shapes.Volume3DInt
- getShape2DInt(Plane3D, float, float) - Method in class mgui.interfaces.shapes.Shape3DInt
- getShape2DInt(Plane3D, float, float, boolean) - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getShape2DInt(Plane3D, float, float, boolean) - Method in class mgui.interfaces.shapes.Shape3DInt
-
Determines a 2D shape which is the projection of this 3D shape onto
plane, within the projection limits defined byabove_distandbelow_dist. - getShape2DInt(Plane3D, float, float, boolean) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
- getShape2DType(Shape2DInt) - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getShape2DType(Shape2DInt, boolean) - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getShape3D(Plane3D) - Method in class mgui.interfaces.shapes.Image2DInt
- getShape3D(Plane3D) - Method in class mgui.interfaces.shapes.Rect2DInt
- getShape3D(Plane3D) - Method in class mgui.interfaces.shapes.Shape2DInt
- getShape3D(Plane3D) - Method in class mgui.interfaces.shapes.Volume2DInt
- getShape3DInt(Plane3D) - Method in class mgui.interfaces.shapes.Shape2DInt
-
Returns a 3D representation of this shape, assuming it belongs to
plane. - getShape3DInt(Plane3D, boolean) - Method in class mgui.interfaces.shapes.Shape2DInt
-
Returns a 3D representation of this shape, assuming it belongs to
plane. - getShape3DIntFromSection(Plane3D, float, Shape2DInt) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
- getShape3DIntFromSection(Plane3D, float, Shape2DInt, boolean) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
- getShapeCount() - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getShapeCount() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
- getShapeCount() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
- getShapeForName(String) - Method in class mgui.interfaces.InterfaceWorkspace
-
Searches the workspace for a shape with the given full name (i.e., {model}.{sets}.{shape_name}), and returns it if found.
- getShapeModel() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
- getShapeModel() - Method in class mgui.interfaces.shapes.trees.ShapeModel3DTreeNode
- getShapeModel() - Method in class mgui.io.domestic.shapes.xml.ShapeModel3DXMLHandler
- getShapeModel(String) - Method in class mgui.interfaces.InterfaceWorkspace
-
Returns the model with the given name, if it exists; returns
nullotherwise. - getShapeModelNode() - Method in class mgui.interfaces.InterfaceWorkspace
- getShapeModels() - Method in class mgui.interfaces.InterfaceWorkspace
- getShapes() - Method in class mgui.geometry.util.NodeShape
-
Returns a list of all shapes to be rendered
- getShapes3D() - Method in class mgui.io.standard.xml.svg.SVGFileInterface
- getShapeSceneNode() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
- getShapeSceneNode() - Method in class mgui.interfaces.shapes.Shape3DInt
-
Returns this ShapeInt's Java3D node.
- getShapeSceneNode(ShapeSelectionSet) - Method in class mgui.interfaces.shapes.Shape3DInt
- getShapeSectionNode(SectionSet3DInt, int) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
- getShapeSet() - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getShapeSet() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
- getShapeSet() - Method in interface mgui.interfaces.shapes.ShapeSet
- getShapeSet() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
- getShapeSet() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
- getShapeSet() - Method in class mgui.io.domestic.shapes.xml.ShapeSet2DXMLHandler
- getShapeSet() - Method in class mgui.io.domestic.shapes.xml.ShapeSet3DXMLHandler
- getShapeSet(int) - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getShapeSet(int) - Method in class mgui.morph.sections.MorphSections3DInt
- getShapeSet(int, double) - Method in class mgui.interfaces.shapes.SectionSet3DInt
-
Return a ShapeSet2DInt of all objects intersected by the current section plane and its upper and lower bounds.
- getShapeSet(int, double) - Method in class mgui.morph.sections.MorphSections3DInt
- getShapeSet2D() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
- getShapeSet2D() - Method in class mgui.interfaces.InterfaceDisplayPanel
- getShapeSet2D() - Method in class mgui.interfaces.shapes.Shape2DSelectionSet
- getShapeSet3DFromSection(Plane3D, float, ShapeSet2DInt, ShapeSelectionSet) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
- getShapeSet3DInt() - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getShapeSet3DInt(ShapeSelectionSet) - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getShapeString() - Method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
- getShapeType(Shape2DInt) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
- getShapeType(Shape2DInt, boolean) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
- getShapeType(Shape2DInt, ShapeSet2DInt, boolean) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
- getShapeType(Shape3DInt) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
- getShapeType(Shape3DInt, boolean) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
- getShapeVertexObject(Shape3D, MguiInteger) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
- getShearX() - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
- getShearY() - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
- getShortestPaths(InterfaceAbstractGraph) - Static method in class mgui.interfaces.graphs.util.GraphFunctions
-
Returns an N x N matrix with the shortest paths lengths between each pair of vertices i and j, in
graph. - getShortestPaths(InterfaceAbstractGraph, ArrayList<Integer>) - Static method in class mgui.interfaces.graphs.util.GraphFunctions
-
Returns an N x N matrix with the shortest paths lengths between each pair of vertices i and j, in
vertices. - getShortName() - Method in class mgui.util.ScaledUnit
- getShortName() - Method in class mgui.util.Unit
- getShortXML() - Method in class mgui.interfaces.graphics.video.VideoTask
- getShortXML(int) - Method in class mgui.datasources.DataConnection
- getShortXML(int) - Method in class mgui.datasources.DataField
- getShortXML(int) - Method in class mgui.datasources.DataQuery
- getShortXML(int) - Method in class mgui.datasources.DataSource
- getShortXML(int) - Method in class mgui.datasources.DataTable
- getShortXML(int) - Method in class mgui.datasources.DataTableSet
- getShortXML(int) - Method in class mgui.geometry.Shape2D
- getShortXML(int) - Method in class mgui.geometry.Shape3D
- getShortXML(int) - Method in class mgui.image.util.WindowedColourModel
- getShortXML(int) - Method in class mgui.interfaces.attributes.Attribute
- getShortXML(int) - Method in class mgui.interfaces.attributes.AttributeList
- getShortXML(int) - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
- getShortXML(int) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
- getShortXML(int) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getShortXML(int) - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
- getShortXML(int) - Method in class mgui.interfaces.graphics.video.Video
- getShortXML(int) - Method in class mgui.interfaces.graphics.video.VideoTask
- getShortXML(int) - Method in class mgui.interfaces.graphics.View3D
- getShortXML(int) - Method in class mgui.interfaces.graphs.AbstractGraphEdge
- getShortXML(int) - Method in class mgui.interfaces.graphs.AbstractGraphNode
- getShortXML(int) - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
- getShortXML(int) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
- getShortXML(int) - Method in class mgui.interfaces.InterfaceDisplayPanel
- getShortXML(int) - Method in class mgui.interfaces.InterfaceWorkspace
- getShortXML(int) - Method in class mgui.interfaces.layouts.InterfaceLayoutWindow
- getShortXML(int) - Method in class mgui.interfaces.layouts.LayoutItem
- getShortXML(int) - Method in class mgui.interfaces.maps.Camera3D
- getShortXML(int) - Method in class mgui.interfaces.maps.ContinuousColourMap
- getShortXML(int) - Method in class mgui.interfaces.maps.DiscreteColourMap
- getShortXML(int) - Method in class mgui.interfaces.maps.Map2D
- getShortXML(int) - Method in class mgui.interfaces.maps.Map3D
- getShortXML(int) - Method in class mgui.interfaces.maps.NameMap
- getShortXML(int) - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
- getShortXML(int) - Method in class mgui.interfaces.plots.InterfacePlotDisplay
- getShortXML(int) - Method in class mgui.interfaces.projects.InterfaceProject
- getShortXML(int) - Method in class mgui.interfaces.projects.ProjectDirectory
- getShortXML(int) - Method in class mgui.interfaces.projects.ProjectInstance
- getShortXML(int) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
- getShortXML(int) - Method in class mgui.interfaces.shapes.Shape2DInt
- getShortXML(int) - Method in class mgui.interfaces.shapes.Shape3DInt
- getShortXML(int) - Method in class mgui.interfaces.shapes.ShapeModel3D
- getShortXML(int) - Method in class mgui.interfaces.shapes.VertexDataColumn
- getShortXML(int) - Method in class mgui.interfaces.tables.InterfaceDataTable
- getShortXML(int) - Method in class mgui.interfaces.variables.VariableInt
- getShortXML(int) - Method in interface mgui.interfaces.xml.XMLObject
-
Returns a short XML representation of this object.
- getShortXML(int) - Method in class mgui.io.InterfaceIOOptions
- getShortXML(int) - Method in class mgui.neuro.imaging.camino.CaminoProject
- getShortXML(int) - Method in class mgui.numbers.MguiBoolean
- getShortXML(int) - Method in class mgui.numbers.MguiDouble
- getShortXML(int) - Method in class mgui.numbers.MguiFloat
- getShortXML(int) - Method in class mgui.numbers.MguiInteger
- getShortXML(int) - Method in class mgui.numbers.MguiLong
- getShortXML(int) - Method in class mgui.numbers.MguiShort
- getShortXML(int) - Method in class mgui.pipelines.PipelineProcess
- getShortXML(int) - Method in class mgui.pipelines.PipelineProcessInstance
- getShortXML(int) - Method in class mgui.pipelines.PipelineTask
- getShortXML(int) - Method in class mgui.util.Colour
- getShortXML(int) - Method in class mgui.util.Colour3f
- getShortXML(int) - Method in class mgui.util.Colour4f
- getShowAxes() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getShowBorder() - Method in class mgui.interfaces.graphics.util.Axes3D
- getShowErrors() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
- getShowLabels() - Method in class mgui.interfaces.graphics.Graphic2DGrid
- getShowLabels() - Method in class mgui.interfaces.graphics.util.Axes3D
- getShowLabels() - Method in class mgui.interfaces.shapes.VectorSet3DInt
- getShowOutput() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
- getShowSection3D() - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getSide(int, int) - Method in class mgui.geometry.Box3D
-
Returns 4 points representing a side of this box.
- getSide(InterfaceGraphicWindow) - Method in class mgui.interfaces.InterfaceSplitPanel
-
Returns the side of the split pane
windowis on. - getSides() - Method in class mgui.geometry.Rect2D
- getSigmaToFWHM(double) - Static method in class mgui.stats.StatFunctions
-
Converts sigma (standard deviations) to full-width at half max (FWHM)
- getSigmoid() - Method in class mgui.neuro.components.cortical.functions.BiexponentialFunction
- getSignedAngle(Vector3d, Vector3d) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines the signed angle that
v1makes withv2. - getSignedDistance(Point3d, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines distance from point
ptto planeplane. - getSignedDistance(Point3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines distance from point
ptto planeplane. - getSimplestColour(Colour, Colour) - Static method in class mgui.util.Colours
- getSize() - Method in class mgui.geometry.Graph3D
- getSize() - Method in class mgui.geometry.Grid3D
-
Returns the total number of data elements in this grid.
- getSize() - Method in class mgui.geometry.mesh.Neighbourhood
- getSize() - Method in class mgui.geometry.mesh.NeighbourhoodMesh
- getSize() - Method in class mgui.geometry.Mesh3D
- getSize() - Method in class mgui.geometry.neuro.mesh.SampleRay
- getSize() - Method in class mgui.geometry.Polygon2D
- getSize() - Method in interface mgui.geometry.Shape
- getSize() - Method in class mgui.geometry.Shape2D
-
Returns the number of vertices in this shape.
- getSize() - Method in class mgui.geometry.Shape3D
-
Returns the number of vertices in this shape.
- getSize() - Method in class mgui.interfaces.attributes.AttributeList
- getSize() - Method in class mgui.interfaces.io.DataSourceEvent
- getSize() - Method in class mgui.interfaces.layouts.LayoutItem
-
Returns the size of this item, in document units.
- getSize() - Method in class mgui.interfaces.maps.DiscreteColourMap
- getSize() - Method in class mgui.interfaces.maps.NameMap
- getSize() - Method in class mgui.interfaces.maps.ValueMap
- getSize() - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog.YTableModel
- getSize() - Method in class mgui.interfaces.plots.sgt.SgtScatterPlotDialog.XYTableModel
- getSize() - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.RenderServer
- getSize() - Method in class mgui.interfaces.shapes.Point2DInt
- getSize() - Method in class mgui.interfaces.shapes.PolygonSet3DInt
- getSize() - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getSize() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
- getSize() - Method in interface mgui.interfaces.shapes.ShapeSet
-
Returns the number of shapes in this set
- getSize() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
-
Returns the number of members in this set
- getSize() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
- getSize() - Method in class mgui.interfaces.shapes.VectorSet3DInt
- getSize() - Method in class mgui.interfaces.variables.MatrixInt
- getSize() - Method in class mgui.interfaces.variables.StringVectorInt
- getSize() - Method in class mgui.interfaces.variables.VariableInt
-
Returns the total size (number of elements) of this variable.
- getSize() - Method in class mgui.interfaces.variables.VectorInt
- getSize(DataType) - Static method in class mgui.datasources.DataTypes
-
Returns the number of bytes required to store a value of DataType
type. - getSizeForSQLType(int) - Static method in class mgui.datasources.DataTypes
-
Returns the number of bytes required to store a value of the SQL type
type. - getSizeForType(int) - Static method in class mgui.datasources.DataTypes
-
Returns the number of bytes required to store a value of DataType value
type. - getSizeR() - Method in class mgui.geometry.Grid3D
-
Returns the data dimensions in the z (R) dimension
- getSizeS() - Method in class mgui.geometry.Grid3D
-
Returns the data dimensions in the x (S) dimension
- getSizeT() - Method in class mgui.geometry.Grid3D
-
Returns the data dimensions in the y (T) dimension
- getSizeV() - Method in class mgui.geometry.Grid3D
- getSizeX() - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout
-
The X dimension of the graph; axes are defined relative to this.
- getSizeY() - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout
-
The Y dimension of the graph; axes are defined relative to this.
- getSkullAndScalpMeshes(int[][], ArrayList<SampleRay>, ArrayList<SampleRay>, ScalpAndSkullModelOptions) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
-
Generates meshes, given the control points; array is ordered as: inner skull outer skull scalp
- getSkullAndScalpMeshes(int[][], ArrayList<SampleRay>, ArrayList<SampleRay>, ScalpAndSkullModelOptions, ProgressUpdater) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
-
Generates meshes, given the control points; array is ordered as: inner skull outer skull scalp control_point_A1 control_point_A2 control_point_A3 control_point_A4
- getSkullAndScalpMeshesBlocking(int[][], ArrayList<SampleRay>, ArrayList<SampleRay>, ScalpAndSkullModelOptions, ProgressUpdater) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
-
Generates meshes, given the control points; array is ordered as: inner skull outer skull scalp control_point_A1 control_point_A2 control_point_A3 control_point_A4 ..and 4 additional meshes for subject control points
- getSnapshot3DMode() - Static method in class mgui.interfaces.InterfaceEnvironment
-
Returns the current mode for take 3D screenshots.
- getSolidColour() - Method in class mgui.image.util.WindowedColourModel
- getSolidColour() - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
-
Returns the colour for solid colour rendering.
- getSolver() - Method in class mgui.neuro.components.AbstractNeuroComponent
- getSoma() - Method in class mgui.neuro.components.AbstractNeuron
- getSoma() - Method in class mgui.neuro.components.compartments.CompartmentalNeuron
- getSoma() - Method in interface mgui.neuro.components.Neuron
- getSortedFace(Mesh3D.MeshFace3D) - Static method in class mgui.geometry.mesh.SortedMesh
- getSortedX() - Method in class mgui.geometry.util.SortedShape3D
- getSortedY() - Method in class mgui.geometry.util.SortedShape3D
- getSortedZ() - Method in class mgui.geometry.util.SortedShape3D
- getSource() - Method in class mgui.interfaces.datasources.DataTableModel
- getSource() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
- getSource() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getSource() - Method in class mgui.interfaces.InterfacePanel
-
Returns the source object for this panel; returns
nullif no source object is set. - getSource() - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
- getSource() - Method in class mgui.interfaces.neuro.InterfaceNetworkTreeNode
- getSource() - Method in class mgui.interfaces.neuro.InterfaceNeuroTreeNode
- getSource() - Method in class mgui.interfaces.tables.InterfaceTableModel
-
Returns the source of data for this table.
- getSource() - Method in class mgui.interfaces.variables.tables.VariableTableModel
- getSource() - Method in class mgui.morph.sections.MorphNodeMap2D
- getSource() - Method in class mgui.morph.sections.RadialRep2DInt
- getSourceActions(JComponent) - Method in class mgui.interfaces.pipelines.trees.PipelineTreeTransferHandler
- getSourceIndex() - Method in class mgui.morph.sections.AttributeNode2D
- getSourceName() - Method in class mgui.datasources.DataSource
-
Returns the name of the underlying database (as contained in its URL).
- getSourceName() - Method in class mgui.interfaces.tables.InterfaceDataTable
- getSourceSignal() - Method in interface mgui.interfaces.io.InterfaceDataSource
-
Returns a list of type
T, representing a signal emission. - getSourceSignal() - Method in class mgui.interfaces.plots.MatrixPlotDataSource
- getSourceSignal() - Method in class mgui.interfaces.plots.PlotTimeSeriesDataSource
- getSourceSignal() - Method in class mgui.interfaces.plots.PlotXYDataSource
- getSourceSignal() - Method in class mgui.io.domestic.shapes.VolumeFileDataSource
- getSourceSignal() - Method in class mgui.models.environments.AbstractEnvironmentDataSource
- getSourceSignalAsBytes() - Method in interface mgui.interfaces.io.InterfaceDataSource
-
Returns an array of bytes, representing a signal emission.
- getSourceSignalAsBytes() - Method in class mgui.interfaces.plots.MatrixPlotDataSource
- getSourceSignalAsBytes() - Method in class mgui.interfaces.plots.PlotTimeSeriesDataSource
- getSourceSignalAsBytes() - Method in class mgui.interfaces.plots.PlotXYDataSource
- getSourceSignalAsBytes() - Method in class mgui.io.domestic.shapes.VolumeFileDataSource
- getSourceSignalAsBytes() - Method in class mgui.models.environments.AbstractEnvironmentDataSource
- getSourceSignalAsDouble(Volume3DInt) - Method in class mgui.io.domestic.shapes.VolumeFileDataSource
- getSourceSignalX() - Method in interface mgui.interfaces.io.InterfaceDataSourceTimeSeries
-
Returns the X data for this source.
- getSourceSignalX() - Method in class mgui.interfaces.plots.PlotTimeSeriesDataSource
- getSourceSignalX() - Method in class mgui.models.environments.AbstractEnvironmentDataSource
- getSourceSignalX(int) - Method in interface mgui.interfaces.io.InterfaceDataSourceXY
-
Returns the X data corresponding to this signal's i'th channel.
- getSourceSignalX(int) - Method in class mgui.interfaces.plots.PlotTimeSeriesDataSource
- getSourceSignalX(int) - Method in class mgui.interfaces.plots.PlotXYDataSource
- getSourceSignalX(int) - Method in class mgui.models.environments.AbstractEnvironmentDataSource
- getSourceSignalX(String) - Method in class mgui.interfaces.plots.PlotXYDataSource
- getSourceSignalXY(int) - Method in interface mgui.interfaces.io.InterfaceDataSourceXY
-
Returns the X-Y data corresponding to this signal's i'th channel.
- getSourceSignalXY(int) - Method in class mgui.interfaces.plots.PlotXYDataSource
- getSourceSignalXY(int) - Method in class mgui.models.environments.AbstractEnvironmentDataSource
- getSourceSignalXY(String) - Method in class mgui.interfaces.plots.PlotXYDataSource
- getSourceSignalY() - Method in interface mgui.interfaces.io.InterfaceDataSourceTimeSeries
-
Returns the Y data corresponding to all channels.
- getSourceSignalY() - Method in class mgui.interfaces.plots.PlotTimeSeriesDataSource
- getSourceSignalY() - Method in class mgui.models.environments.AbstractEnvironmentDataSource
- getSourceSignalY(int) - Method in interface mgui.interfaces.io.InterfaceDataSourceTimeSeries
-
Returns the Y data corresponding to this signal's i'th channel.
- getSourceSignalY(int) - Method in interface mgui.interfaces.io.InterfaceDataSourceXY
-
Returns the Y data corresponding to this signal's i'th channel.
- getSourceSignalY(int) - Method in class mgui.interfaces.plots.PlotTimeSeriesDataSource
- getSourceSignalY(int) - Method in class mgui.interfaces.plots.PlotXYDataSource
- getSourceSignalY(int) - Method in class mgui.models.environments.AbstractEnvironmentDataSource
- getSourceSignalY(String) - Method in class mgui.interfaces.plots.PlotTimeSeriesDataSource
- getSourceSignalY(String) - Method in class mgui.interfaces.plots.PlotXYDataSource
- getSourceTypes() - Static method in class mgui.interfaces.graphics.InterfaceGraphic
- getSourceURL() - Method in class mgui.interfaces.shapes.InterfaceShape
- getSourceURL() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
- getSpacing() - Method in class mgui.interfaces.graphics.Graphic2DGrid
- getSpacing() - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getSpatialUnit(String) - Static method in class mgui.interfaces.InterfaceEnvironment
-
Returns the spatial unit with the specified name, or
nullif not spatial unit exists by that name. - getSpatialUnits() - Static method in class mgui.interfaces.InterfaceEnvironment
- getSphereAtPoint(float, Point3d) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
-
Returns a
TransformGroupwith a sphere at the specified point, with the specified radius. - getSphereAtPoint(float, Point3d, boolean) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
-
Returns a
TransformGroupwith a sphere at the specified point, with the specified radius. - getSphereAtPoint(float, Point3d, Appearance, boolean) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
-
Returns a
TransformGroupwith a sphere at the specified point, with the specified radius andAppearance. - getSphereAtPoint(float, Point3f) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
-
Returns a
TransformGroupwith a sphere at the specified point, with the specified radius. - getSplitOrientation() - Method in class mgui.interfaces.InterfaceSplitPanel
-
Returns the current orientation for this split panel; see JSplitPane.VERTICAL_SPLIT.
- getSplitPanelQueue(int) - Method in class mgui.interfaces.InterfaceSplitPanel
-
Returns a reversed queue of split panels, with the bottom-most being the highest in the nested tree
- getSplitPanelStack() - Method in class mgui.interfaces.InterfaceSplitPanel
-
Returns a stack of split panels, with the top-most being the highest in the nested tree
- getSplitRatio() - Method in class mgui.interfaces.InterfaceSplitPanel
- getSQLForKey(String) - Method in class mgui.datasources.LinkedDataStream
- getSQLName(String) - Method in class mgui.datasources.DataSourceDriver
-
Returns a string from
namethat is safe for this driver. - getSQLName(String) - Method in class mgui.datasources.tinysql.TinySQLDriver
- getSQLQuote() - Method in class mgui.datasources.DataSourceDriver
-
Returns a driver-specific SQL quotation mark; subclasses should only override this if their drivers expect non-standard SQL input.
- getSQLQuote() - Method in class mgui.datasources.postgresql.PostgreSQLDriver
- getSQLQuote() - Method in class mgui.datasources.tinysql.TinySQLDriver
- getSQLSortStr() - Method in class mgui.datasources.DataTable
- getSQLSortStr(String[]) - Method in class mgui.datasources.DataTable
- getSQLSortStr(String[], DataSourceDriver) - Method in class mgui.datasources.DataTable
- getSQLSortStr(DataSourceDriver) - Method in class mgui.datasources.DataTable
- getSQLStatement() - Method in class mgui.datasources.DataQuery
- getSQLStatement() - Method in class mgui.datasources.DataTable
- getSQLStatement() - Method in interface mgui.datasources.SQLObject
-
Produces an SQL statement with the default character set
- getSQLStatement(int) - Method in class mgui.datasources.DataQuery
- getSQLStatement(String[]) - Method in class mgui.datasources.DataTable
- getSQLStatement(String[], DataSourceDriver) - Method in class mgui.datasources.DataTable
- getSQLStatement(DataSourceDriver) - Method in class mgui.datasources.DataQuery
- getSQLStatement(DataSourceDriver) - Method in class mgui.datasources.DataTable
- getSQLStatement(DataSourceDriver) - Method in interface mgui.datasources.SQLObject
-
Produces an SQL statement with a driver-specific character set
- getSQLString() - Method in class mgui.datasources.DataField
-
Returns an SQL string representing this field
- getSQLString(DataSourceDriver) - Method in class mgui.datasources.DataField
-
Returns an SQL string representing this field, formatted to suit a specific driver (since the JDBC standard is not always used in a standard way....)
- getSQLStrValue(String) - Static method in class mgui.datasources.DataTypes
-
Returns the equivalent integer value (from
Typesfor the given type string. - getSQLType(int, int) - Method in class mgui.datasources.DataSourceDriver
-
Returns a driver-specific SQL quotation mark
- getSQLType(int, int) - Method in class mgui.datasources.tinysql.TinySQLDriver
- getSQLTypeClass(int) - Static method in class mgui.datasources.DataTypes
-
Return the class of given data type
- getSQLTypeLabel(int) - Static method in class mgui.datasources.DataTypes
- getSQLTypeObject(int) - Static method in class mgui.datasources.DataTypes
- getSQLTypeStr(int) - Static method in class mgui.datasources.DataTypes
- getSQLTypeStr(int, int) - Static method in class mgui.datasources.DataTypes
- getSquaredDeltas(double[]) - Method in class mgui.models.environments.SimpleEnvironment
-
Returns the squared difference between this environment's current state and the given values.
- getSquaredError() - Method in interface mgui.models.dynamic.stats.DynamicModelStatistics
- getSquaredError() - Method in class mgui.neuro.stats.SimpleStatistics
- getSSL() - Method in class mgui.datasources.DataSourceDriver
- getSSliceImage(int) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
-
Returns a slice image at the plane S=
s. - getSSliceImage(int, WindowedColourModel) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
-
Returns a slice image at the plane S=
s. - getStart() - Method in class au.edu.unsw.cse.PointStack
- getStart() - Method in class mgui.geometry.Vector2D
- getStart() - Method in class mgui.geometry.Vector3D
- getStart() - Method in class mgui.interfaces.graphics.video.VideoTask
-
Returns the start time for this task
- getStartPolygon() - Method in class mgui.morph.sections.MappedPolygon2DPath
- getStartPtScale() - Method in class mgui.interfaces.shapes.VectorSet3DInt
- getStartRatio() - Method in class mgui.interfaces.shapes.Vector2DInt
- getState() - Method in class mgui.models.dynamic.functions.ODEFunction
- getState() - Method in class mgui.neuro.components.compartments.AbstractCompartment
- getState() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getState() - Method in class mgui.pipelines.InterfacePipeline
-
Returns the state of this pipeline, or the root pipeline if this is not the root.
- getStatus() - Method in class mgui.pipelines.PipelineTask
-
Returns the status of this task; one of:
NotStartedProcessingSuccessFailure - getStatusMessages(Point) - Method in class mgui.interfaces.graphics.InterfaceGraphic
-
Returns a list of status messages, to be displayed in the status bar
- getStatusStr() - Method in class mgui.pipelines.PipelineTask
-
Returns the status of this task as a string; one of:
NotStartedProcessingSuccessFailure - getStep() - Method in class mgui.models.updaters.LinearUpdater
- getStop() - Method in class mgui.interfaces.graphics.video.VideoTask
-
Returns the stop time for this task
- getStrComparator() - Static method in class mgui.neuro.components.cortical.AbstractCorticalRegion
- getStreams() - Method in class mgui.io.util.ParallelOutputStream
- getString(double, int) - Static method in class mgui.numbers.MguiDouble
- getString(double, int, boolean) - Static method in class mgui.numbers.MguiDouble
- getString(double, String) - Static method in class mgui.numbers.MguiDouble
- getString(float, int) - Static method in class mgui.numbers.MguiFloat
- getString(float, String) - Static method in class mgui.numbers.MguiFloat
- getString(int, String) - Static method in class mgui.numbers.MguiInteger
- getString(int, String) - Static method in class mgui.numbers.MguiLong
- getString(int, String) - Static method in class mgui.numbers.MguiShort
- getStringForValue(int, Object) - Method in class mgui.io.domestic.datasources.ExportDataTableWriter
-
Returns a String corresponding to
value. - getStroke() - Method in class mgui.interfaces.gui.LineStyleDialog
- getStroke() - Method in class mgui.interfaces.shapes.util.StrokeSample
-
Returns the current Stroke object being displayed.
- getStyle() - Method in class mgui.interfaces.graphics.Graphic2DGrid
- getSubComponents() - Method in interface mgui.models.dynamic.DynamicModelComponent
- getSubComponents() - Method in class mgui.neuro.components.AbstractAxon
- getSubComponents() - Method in class mgui.neuro.components.AbstractDendrite
- getSubComponents() - Method in class mgui.neuro.components.AbstractDendrites
- getSubComponents() - Method in class mgui.neuro.components.AbstractMotorNeuron
- getSubComponents() - Method in class mgui.neuro.components.AbstractNeuroComponent
-
Returns a list of the complete subcomponent tree.
- getSubComponents() - Method in class mgui.neuro.components.AbstractNeuron
- getSubComponents() - Method in class mgui.neuro.components.AbstractSensoryNeuron
- getSubComponents() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
- getSubdirectories() - Method in class mgui.interfaces.projects.ProjectDirectory
-
Returns a sorted list of this directory's subdirectories
- getSubdirectory(String) - Method in class mgui.interfaces.projects.ProjectDirectory
- getSubdirs() - Method in class mgui.interfaces.projects.InterfaceProject
- getSubdirs(File, boolean) - Static method in class mgui.io.util.IoFunctions
- getSubGrid(Point3f, Point3f) - Method in class mgui.geometry.Grid3D
-
Returns two points (min coords, max coords) which represent a subset of this grid which is bounded by the geometric box specified by p1 and p2 (i.e., a voxel must be contained within the box, or must enclose its boundary).
- getSubjectIcon() - Static method in class mgui.interfaces.projects.ProjectInstance
- getSubMesh(Mesh3D, ArrayList<Integer>) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns a submesh defined by the connect ring
ring. - getSubMesh(Mesh3D, ArrayList<MguiNumber>, int, boolean) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns a submesh comprised of all unmasked (mask != 0) vertices and all faces whose vertices are retained.
- getSubMesh(Mesh3D, ArrayList<MguiNumber>, int, boolean, boolean, HashMap<String, ArrayList<MguiNumber>>, HashMap<String, ArrayList<MguiNumber>>) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns a submesh based upon a mask.
- getSubMesh(Mesh3D, ArrayList<MguiNumber>, int, boolean, HashMap<String, ArrayList<MguiNumber>>, HashMap<String, ArrayList<MguiNumber>>) - Static method in class mgui.geometry.mesh.MeshFunctions
- getSubMesh(Mesh3D, ArrayList<MguiNumber>, int, int, boolean, boolean, HashMap<String, ArrayList<MguiNumber>>, HashMap<String, ArrayList<MguiNumber>>) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns a submesh comprised of all unmasked (mask != 0) vertices and all faces whose vertices are retained.
- getSubMesh(Mesh3D, VertexSelection, boolean) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns a sub-mesh of
mesh_oldcontaining all vertices and associated faces inselection. - getSubMesh(Mesh3D, VertexSelection, boolean, boolean, HashMap<String, ArrayList<MguiNumber>>, HashMap<String, ArrayList<MguiNumber>>) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns a sub-mesh of
mesh_oldcontaining all vertices and associated faces inselection. - getSubMesh(Mesh3DInt, Mesh3DInt, boolean, boolean) - Method in class mgui.geometry.mesh.MeshEngine
- getSubMesh(Mesh3DInt, Mesh3DInt, ArrayList<MguiNumber>, int, boolean, boolean) - Method in class mgui.geometry.mesh.MeshEngine
- getSubSection(int) - Method in class mgui.morph.sections.MorphSections3DInt
-
Adds shapes from morph section set newSections to corresponding sections in this set.
- getSubSectionDist(int) - Method in class mgui.morph.sections.MorphSections3DInt
- getSubsections(ArrayList<MappedPolygon2DPath>, int, AttributeList) - Method in class mgui.morph.sections.MorphEngine
-
Given a set of mapped polygons, generate
new subsections for each section s, which morph from polygon i to polygon j. - getSubSets() - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getSubSets() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
- getSubSets() - Method in interface mgui.interfaces.shapes.ShapeSet
- getSubSets() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
- getSubSets() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
- getSuccessMessage() - Method in class mgui.io.domestic.datasources.DataSourceDriverWriter
- getSuccessMessage() - Method in class mgui.io.domestic.graphs.GraphFileLoader
- getSuccessMessage() - Method in class mgui.io.domestic.maps.NameMapWriter
- getSuccessMessage() - Method in class mgui.io.domestic.shapes.SurfaceDataFileLoader
- getSuccessMessage() - Method in class mgui.io.domestic.shapes.SurfaceDataFileWriter
- getSuccessMessage() - Method in class mgui.io.domestic.shapes.SurfaceFileLoader
- getSuccessMessage() - Method in class mgui.io.domestic.shapes.SurfaceFileWriter
- getSuccessMessage() - Method in class mgui.io.domestic.variables.MatrixFileWriter
- getSuccessMessage() - Method in class mgui.io.FileLoader
-
Returns a message to indicate that loading was successful.
- getSuccessMessage() - Method in class mgui.io.FileWriter
- getSuccessMessage() - Method in interface mgui.io.InterfaceIO
- getSuccessMessage() - Method in class mgui.pipelines.InterfacePipeline
- getSuccessMessage() - Method in class mgui.pipelines.JavaProcess
- getSuccessMessage() - Method in class mgui.pipelines.NativeProcess
- getSuccessMessage() - Method in class mgui.pipelines.PipelineFork
- getSuccessMessage() - Method in class mgui.pipelines.PipelineProcess
-
Returns the message to be displayed when this process has succeeded.
- getSuccessMessage() - Method in class mgui.pipelines.PipelineProcessInstance
- getSuccessMessage() - Method in class mgui.pipelines.PipelineTask
-
Message to display if this task terminated successfully
- getSuccessStatus() - Method in class mgui.command.CommandInterpreter
- getSum(double[]) - Static method in class mgui.numbers.NumberFunctions
- getSum(MguiNumber, MguiNumber) - Static method in class mgui.numbers.NumberFunctions
- getSumForColumn(Matrix, int) - Static method in class mgui.geometry.util.MatrixFunctions
-
Returns the sum of
col. - getSumForRow(Matrix, int) - Static method in class mgui.geometry.util.MatrixFunctions
-
Returns the sum of
row. - getSupportedObjects() - Method in class mgui.interfaces.io.InterfaceIOType
-
Returns a list of classes for objects which are supported by this I/O interface
- getSupportedObjects() - Method in class mgui.io.domestic.datasources.DataSourceDriverLoader
- getSupportedObjects() - Method in class mgui.io.domestic.datasources.DataSourceDriverWriter
- getSupportedObjects() - Method in class mgui.io.domestic.datasources.DataSourceLoader
- getSupportedObjects() - Method in class mgui.io.domestic.graphs.GraphFileLoader
- getSupportedObjects() - Method in class mgui.io.domestic.maps.ColourMapLoader
- getSupportedObjects() - Method in class mgui.io.domestic.maps.ContinuousColourMapWriter
- getSupportedObjects() - Method in class mgui.io.domestic.maps.DiscreteColourMapWriter
- getSupportedObjects() - Method in class mgui.io.domestic.printing.StlWriter
- getSupportedObjects() - Method in class mgui.io.domestic.shapes.Graph3DWriter
- getSupportedObjects() - Method in class mgui.io.domestic.shapes.InterfaceShapeWriter
- getSupportedObjects() - Method in class mgui.io.domestic.shapes.ShapeModel3DLoader
- getSupportedObjects() - Method in class mgui.io.domestic.shapes.SurfaceDataFileLoader
- getSupportedObjects() - Method in class mgui.io.domestic.shapes.SurfaceDataFileWriter
- getSupportedObjects() - Method in class mgui.io.domestic.shapes.SurfaceFileLoader
- getSupportedObjects() - Method in class mgui.io.domestic.shapes.SurfaceFileWriter
- getSupportedObjects() - Method in class mgui.io.domestic.shapes.VolumeFileLoader
- getSupportedObjects() - Method in class mgui.io.domestic.shapes.VolumeFileWriter
- getSupportedObjects() - Method in class mgui.io.FileLoader
- getSupportedObjects() - Method in class mgui.io.FileWriter
- getSupportedObjects() - Method in interface mgui.io.InterfaceIO
-
Returns a list of classes for objects which are supported by this I/O interface
- getSupportingTypes(InterfaceObject) - Static method in class mgui.io.util.IoFunctions
-
Returns a list of IO types which are compatible (i.e., handle the same set of objects) as
type. - getSurfaceNormals(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Returns surface normals for all vertices of
mesh, determined as the average vector of all triangular face normals. - getSynapseCount() - Method in class mgui.neuro.components.AbstractDendrite
- getSynapseCount() - Method in class mgui.neuro.components.compartments.CompartmentalDendrite
- getSynapseCount() - Method in interface mgui.neuro.components.Dendrite
- getSynapses() - Method in class mgui.neuro.components.AbstractAxon
- getSynapses() - Method in class mgui.neuro.components.AbstractDendrite
- getSynapses() - Method in class mgui.neuro.components.AbstractDendrites
- getSynapses() - Method in interface mgui.neuro.components.Axon
- getSynapses() - Method in class mgui.neuro.components.compartments.CompartmentalDendrite
- getSynapses() - Method in interface mgui.neuro.components.Dendrite
- getSynapses() - Method in interface mgui.neuro.components.Dendrites
- getSystemErrorStream() - Static method in class mgui.interfaces.InterfaceEnvironment
-
Gets the system input stream.
- getSystemOutputStream() - Static method in class mgui.interfaces.InterfaceEnvironment
-
Gets the system output stream.
- getSystemRoot() - Static method in class mgui.io.util.IoFunctions
-
Returns the root directory of the current operating system.
- getTab(int) - Static method in class mgui.interfaces.xml.XMLFunctions
-
Returns a string with the specified number of tabs
- getTab(String) - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
- getTabIndex(String) - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
- getTable() - Method in class mgui.interfaces.tables.InterfaceDataTableTitle
- getTable(String) - Method in class mgui.datasources.DataTableSet
- getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class mgui.interfaces.attributes.table.AttributeCellEditor
- getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class mgui.interfaces.graphics.InterfaceGraphicPanel.GraphicWindowListEditor
- getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class mgui.interfaces.maps.DiscreteColourMapTable.Editor
- getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel.SliderTableColumn
- getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel.AlphaSliderEditor
- getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class mgui.interfaces.trees.InterfaceTreeTable.TreeTableCellEditor
- getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class mgui.interfaces.attributes.table.AttributeCellRenderer
- getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class mgui.interfaces.graphics.InterfaceGraphicPanel.GraphicWindowListRenderer
- getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class mgui.interfaces.gui.RowNumberTable.RowNumberRenderer
- getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel.SliderTableColumn
- getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel.AlphaSliderRenderer
- getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class mgui.interfaces.trees.InterfaceTreeTable.TreeTableCellRenderer
- getTableModel() - Method in class mgui.interfaces.tables.InterfaceDataTable
- getTables() - Method in class mgui.datasources.DataTableSet
- getTableSet() - Method in class mgui.datasources.DataSource
-
Returns the set of tables for this data source.
- getTablesFromMetaData() - Method in class mgui.datasources.DataSource
-
Returns a list of tables retrieved from this data source's meta data.
- getTarget() - Method in class mgui.morph.sections.MorphNodeMap2D
- getTargetPoint() - Method in class mgui.interfaces.maps.Camera3D
- getTargets() - Method in class mgui.neuro.components.cortical.AbstractCorticalConnection
- getTask() - Method in class mgui.interfaces.pipelines.trees.TaskTreeNode
- getTask() - Method in class mgui.pipelines.StaticPipelineEvent
- getTaskAtIndex(int) - Method in class mgui.pipelines.InterfacePipeline
- getTaskIndex() - Method in class mgui.pipelines.StaticPipelineEvent
- getTaskIndex(PipelineTask) - Method in class mgui.pipelines.InterfacePipeline
- getTaskInstance() - Method in class mgui.interfaces.graphics.video.VideoTaskType
- getTaskMenu() - Method in class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree
- getTaskMenu() - Method in class mgui.interfaces.pipelines.trees.PipelineTree
- getTaskNode(PipelineTask) - Method in class mgui.interfaces.pipelines.trees.PipelineTree
-
Searches for a child node having
taskas its user object. - getTaskNode(PipelineTask, InterfaceTreeNode) - Method in class mgui.interfaces.pipelines.trees.PipelineTree
-
Searches for a child node having
taskas its user object. - getTasks() - Method in class mgui.interfaces.graphics.video.Video
-
Returns all tasks in this video.
- getTasks() - Method in class mgui.pipelines.InterfacePipeline
- getTasks() - Method in class mgui.pipelines.PipelineFork
- getTau() - Method in class mgui.neuro.components.cortical.functions.BiexponentialFunction
- getTau() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getTauS() - Method in class mgui.neuro.components.cortical.functions.BiexponentialFunction
- getTAxis() - Method in class mgui.geometry.Box3D
-
Returns a copy of this box's T-axis (analogous to Y-axis).
- getTDim() - Method in class mgui.geometry.Box3D
-
Returns the geometric size of the y (T) dimension
- getTempDir() - Static method in class mgui.io.util.IoFunctions
-
Returns this system's temporary directory
- getTempInputPath() - Method in class mgui.pipelines.PipelineState
- getTemplate() - Method in class mgui.datasources.postgresql.PostgreSQLDriver
-
Returns the name of the current template database
- getTempOutputPath() - Method in class mgui.pipelines.PipelineState
- getTestSet() - Method in interface mgui.models.dynamic.stats.DynamicModelStatistics
- getTestSet() - Method in class mgui.neuro.stats.SimpleStatistics
- getTexCoord(Point3f) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
- getTexCoords() - Method in class mgui.interfaces.shapes.util.Image2DTexture
- getTexCoords() - Method in class mgui.interfaces.shapes.util.TestTexture
- getTexCoords(int) - Method in class mgui.interfaces.shapes.util.Image3DTexture
- getTexCoords(String, int, float) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
- getTexCoords(Polygon2D) - Method in class mgui.interfaces.shapes.util.TestTexture
- getTexCoords3d(int) - Method in class mgui.interfaces.shapes.util.TestTexture
- getTexCoordsForPoly(ArrayList<Point3f>) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
- getTexCoordsX(int, float) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
- getTexCoordsY(int, float) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
- getTexCoordsZ(int, float) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
- getTexGen2D(Shape3DInt) - Method in class mgui.interfaces.shapes.util.TestTexture
- getTexGen3D(Shape3DInt) - Method in class mgui.interfaces.shapes.util.TestTexture
- getText() - Method in class mgui.geometry.Text2D
- getText() - Method in class mgui.interfaces.shapes.Text2DInt
- getTextNonSelectionColor() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
-
Returns the color the text is drawn with when the node isn't selected.
- getTextSelectionColor() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
-
Returns the color the text is drawn with when the node is selected.
- getTexture() - Method in class mgui.interfaces.shapes.util.Image2DTexture
- getTexture() - Method in class mgui.interfaces.shapes.util.Image3DTexture
- getTexture() - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
- getTexture() - Method in class mgui.interfaces.shapes.Volume3DInt
- getTextureType(String) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
- getTextValue() - Method in class mgui.datasources.DataField
- getTextValue(String) - Method in class mgui.datasources.DataField
- getThreshold() - Method in class mgui.neuro.components.simple.SimpleSoma
- getTimeFromStr(String) - Static method in class mgui.util.TimeFunctions
- getTimer() - Static method in class mgui.command.CommandInterpreter
- getTimeStr(long) - Static method in class mgui.util.TimeFunctions
- getTimeStr(long, String) - Static method in class mgui.util.TimeFunctions
- getTitle() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
- getTitle() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
- getTitle() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getTitle() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
- getTitle() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
- getTitle() - Method in class mgui.interfaces.InterfacePanel
- getTitle() - Method in class mgui.interfaces.plots.InterfacePlot
- getTitle() - Method in class mgui.interfaces.tables.InterfaceDataTable
- getTitle() - Method in class mgui.io.domestic.datasources.DataSourceDriverWriter
- getTitle() - Method in class mgui.io.domestic.graphs.GraphFileLoader
- getTitle() - Method in class mgui.io.domestic.graphs.GraphFileWriter
- getTitle() - Method in class mgui.io.domestic.maps.NameMapWriter
- getTitle() - Method in class mgui.io.domestic.shapes.SurfaceDataFileLoader
- getTitle() - Method in class mgui.io.domestic.shapes.SurfaceDataFileWriter
- getTitle() - Method in class mgui.io.domestic.shapes.SurfaceFileLoader
- getTitle() - Method in class mgui.io.domestic.shapes.SurfaceFileWriter
- getTitle() - Method in class mgui.io.domestic.variables.MatrixFileWriter
- getTitle() - Method in class mgui.io.FileLoader
- getTitle() - Method in class mgui.io.FileWriter
- getTitle() - Method in class mgui.io.foreign.wavefront.WavefrontSurfaceLoader
- getTitle() - Method in interface mgui.io.InterfaceIO
- getTitleButton() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
- getTo() - Method in class mgui.interfaces.graphs.AbstractGraphEdge
- getTool() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getTool() - Method in class mgui.interfaces.tools.ToolEvent
- getToolLock() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
- getToolLock() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getToolLock() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
- getToolLock() - Method in class mgui.interfaces.InterfaceDisplayPanel
- getToolTitle() - Method in class mgui.interfaces.tools.dialogs.DialogTool
- getToolTitle() - Method in class mgui.interfaces.tools.shapes.ToolCreateMeshFromPolylines
- getToolTitle() - Method in class mgui.interfaces.tools.shapes.ToolCutMeshWithPlane
- getToolTitle() - Method in class mgui.interfaces.tools.shapes.ToolGetConvexHull2D
- getToolTitle() - Method in class mgui.interfaces.tools.shapes.ToolGetMeshIntersectionPolylines
- getTopoFile() - Method in class mgui.io.foreign.caret.CaretSurfaceInOptions
- getTopoFile() - Method in class mgui.io.foreign.caret.CaretSurfaceOutDialogBox
- getTopoFile() - Method in class mgui.io.standard.gifti.xml.GiftiXMLHandler
-
Returns the associated topo file, if one was set.
- getTransferData(DataFlavor) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
- getTransferData(DataFlavor) - Method in class mgui.interfaces.shapes.Shape2DInt
- getTransferData(DataFlavor) - Method in class mgui.interfaces.shapes.Shape3DInt
- getTransferData(DataFlavor) - Method in class mgui.interfaces.shapes.ShapeModel3D
- getTransferData(DataFlavor) - Method in class mgui.pipelines.PipelineTask
- getTransferDataFlavors() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
- getTransferDataFlavors() - Method in class mgui.interfaces.shapes.Shape2DInt
- getTransferDataFlavors() - Method in class mgui.interfaces.shapes.Shape3DInt
- getTransferDataFlavors() - Method in class mgui.interfaces.shapes.ShapeModel3D
- getTransferDataFlavors() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
- getTransferDataFlavors() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
- getTransferDataFlavors() - Method in class mgui.pipelines.PipelineTask
- getTransferFunction() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
- getTransferType(DataType) - Static method in class mgui.util.Colours
- getTransform() - Method in class mgui.interfaces.maps.Map2D
-
Returns a transform corresponding to this map.
- getTransform() - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
- getTransformer(Layer) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
- getTransforms() - Method in class mgui.io.standard.gifti.xml.GiftiXMLHandler
-
Returns the transform(s), if any were set
- getTranslateX() - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
- getTranslateXY() - Method in class mgui.interfaces.maps.Camera3D
- getTranslateY() - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
- getTransparencyAttributes() - Method in class mgui.interfaces.shapes.Mesh3DInt
- getTree() - Method in class mgui.interfaces.trees.InterfaceTreePanel
- getTreeCellEditorComponent(JTree, Object, boolean, boolean, boolean, int) - Method in class mgui.interfaces.attributes.tree.AttributeTreeCellEditor
- getTreeCellEditorComponent(JTree, Object, boolean, boolean, boolean, int) - Method in class mgui.interfaces.queries.tables.QueryResultTableTreeEditor
- getTreeCellEditorComponent(JTree, Object, boolean, boolean, boolean, int) - Method in class mgui.interfaces.shapes.trees.ShapeTreeCellEditor
- getTreeCellEditorComponent(JTree, Object, boolean, boolean, boolean, int) - Method in class mgui.interfaces.trees.InterfaceTreeCellEditor
- getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class mgui.interfaces.attributes.tree.AttributeTreeCellRenderer
- getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
-
Configures the renderer based on the passed in components.
- getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class mgui.interfaces.graphs.tree.GraphTreeCellRenderer
- getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class mgui.interfaces.queries.tables.QueryResultTableTreeRenderer
- getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class mgui.interfaces.shapes.trees.ShapeTreeCellRenderer
- getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class mgui.interfaces.trees.InterfaceTreeCellRenderer
- getTreeLabel() - Method in class mgui.datasources.DataConnection
- getTreeLabel() - Method in class mgui.datasources.DataQuery
- getTreeLabel() - Method in class mgui.datasources.DataSource
- getTreeLabel() - Method in class mgui.datasources.DataTable
- getTreeLabel() - Method in class mgui.datasources.DataTableSet
- getTreeLabel() - Method in class mgui.datasources.LinkedDataStream
- getTreeLabel() - Method in class mgui.interfaces.AbstractInterfaceObject
- getTreeLabel() - Method in class mgui.interfaces.attributes.Attribute
- getTreeLabel() - Method in class mgui.interfaces.attributes.AttributeList
- getTreeLabel() - Method in class mgui.interfaces.graphics.util.Axes3D
- getTreeLabel() - Method in class mgui.interfaces.graphs.DefaultGraph
- getTreeLabel() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
- getTreeLabel() - Method in class mgui.interfaces.InterfaceDisplayPanel
- getTreeLabel() - Method in class mgui.interfaces.InterfaceOptions
- getTreeLabel() - Method in class mgui.interfaces.InterfacePanel
- getTreeLabel() - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
- getTreeLabel() - Method in class mgui.interfaces.InterfaceWorkspace.CollectionTreeNode
- getTreeLabel() - Method in class mgui.interfaces.io.InterfaceFile
- getTreeLabel() - Method in class mgui.interfaces.io.InterfaceIOType
- getTreeLabel() - Method in class mgui.interfaces.maps.Camera3D
- getTreeLabel() - Method in class mgui.interfaces.maps.NameMap
- getTreeLabel() - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
- getTreeLabel() - Method in class mgui.interfaces.plots.InterfacePlot
- getTreeLabel() - Method in class mgui.interfaces.plots.mgui.PlotMap2D
- getTreeLabel() - Method in class mgui.interfaces.plots.sgt.SgtAxis
- getTreeLabel() - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
- getTreeLabel() - Method in class mgui.interfaces.projects.InterfaceProject
- getTreeLabel() - Method in class mgui.interfaces.projects.ProjectDataItem
- getTreeLabel() - Method in class mgui.interfaces.projects.ProjectDirectory
- getTreeLabel() - Method in class mgui.interfaces.projects.ProjectInstance
- getTreeLabel() - Method in class mgui.interfaces.queries.InterfaceQuery
- getTreeLabel() - Method in class mgui.interfaces.shapes.InterfaceShape.VertexDataSet
- getTreeLabel() - Method in class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt
- getTreeLabel() - Method in class mgui.interfaces.shapes.Shape2DInt
- getTreeLabel() - Method in class mgui.interfaces.shapes.Shape3DInt
- getTreeLabel() - Method in class mgui.interfaces.shapes.VertexDataColumn
- getTreeLabel() - Method in class mgui.interfaces.tables.InterfaceTableModel
- getTreeLabel() - Method in interface mgui.interfaces.trees.TreeObject
-
Returns the label text to appear in a tree node.
- getTreeLabel() - Method in class mgui.pipelines.PipelineProcess
- getTreeLabel() - Method in class mgui.pipelines.PipelineProcessInstance
- getTreeLabel() - Method in class mgui.pipelines.TaskParameterInstance
- getTreeModel(InterfaceTreeNode) - Method in class mgui.interfaces.pipelines.trees.PipelineTree
- getTreeNode() - Method in class mgui.interfaces.queries.QueryResult
- getTreeNode() - Method in interface mgui.interfaces.shapes.util.TreeShape
- getTreeNode(JTree) - Method in class mgui.neuro.imaging.camino.CaminoProject
- getTreeNode(ShapeSet3DInt) - Method in class mgui.interfaces.graphics.InterfaceGraphic
- getTreeNode(ShapeSet3DInt) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
- getTreeNodeCopy() - Method in class mgui.interfaces.shapes.ShapeModel3D
- getTreeNodeCopy() - Method in class mgui.models.dynamic.functions.Function
- getTreeNodeCopy() - Method in class mgui.models.environments.SimpleEnvironment
- getTreeValues(int) - Method in class mgui.geometry.util.K3DBinaryTree
-
Returns a list of values representing the position of each vertex in this tree.
- getTriangulation(Point3f[]) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Triangulates a set of nodes that form a ring.
- getTrilinearVoxels(Grid3D, Point3f) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Returns the trilinear neighbourhood of
point, which includes the 8 voxels surrounding and enclosing it. - getTrue() - Method in class mgui.numbers.MguiBoolean
- getTSliceImage(int) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
-
Returns a slice image at the plane T=
t. - getTSliceImage(int, WindowedColourModel) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
-
Returns a slice image at the plane T=
t. - getTuning() - Method in class mgui.neuro.components.simple.SimpleSensoryNeuron
- getTupleStr(Tuple3d, int) - Static method in class mgui.interfaces.xml.XMLFunctions
- getTupleStr(Tuple3f, int) - Static method in class mgui.interfaces.xml.XMLFunctions
- getType() - Method in class mgui.interfaces.Clipboard.Item
- getType() - Method in class mgui.interfaces.events.CameraEvent
- getType() - Method in class mgui.interfaces.events.DialogActionEvent
- getType() - Method in class mgui.interfaces.graphics.GraphicEvent
- getType() - Method in class mgui.interfaces.graphics.video.Video
- getType() - Method in class mgui.interfaces.graphics.video.Video3D
- getType() - Method in class mgui.interfaces.graphics.WindowEvent
- getType() - Method in class mgui.interfaces.graphs.AbstractGraphEdge
- getType() - Method in class mgui.interfaces.InterfacePanel
- getType() - Method in class mgui.interfaces.io.InterfaceIOType
- getType() - Method in class mgui.interfaces.maps.Map
- getType() - Method in class mgui.interfaces.maps.Map2D
- getType() - Method in class mgui.interfaces.maps.Map3D
- getType() - Method in class mgui.interfaces.maps.TypeMap
- getType() - Method in class mgui.interfaces.plots.sgt.SgtAxis
-
Returns the type of this axis; one of: X Y
- getType() - Method in class mgui.interfaces.projects.ProjectInstance
- getType() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionEvent
- getType() - Method in class mgui.interfaces.SplitPanelEvent
- getType() - Method in class mgui.interfaces.tools.ToolEvent
- getType() - Method in class mgui.interfaces.variables.MatrixInt
- getType() - Method in class mgui.interfaces.variables.StringVectorInt
- getType() - Method in class mgui.interfaces.variables.VariableInt
-
Returns a
Classobject which is the parameterized type of this variable. - getType() - Method in class mgui.pipelines.StaticPipelineEvent
- getType(int) - Static method in class mgui.datasources.DataTypes
- getType(int) - Static method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
- getType(String) - Static method in class mgui.datasources.DataTypes
- getType(String) - Static method in class mgui.interfaces.graphics.InterfaceGraphic
- getTypeForSize(int) - Static method in class mgui.datasources.DataTypes
- getTypeForSQL(int) - Static method in class mgui.datasources.DataTypes
-
Returns a
DataTypefor the given SQL type (fromTypes). - getTypeForSQLStr(String) - Static method in class mgui.datasources.DataTypes
- getTypeForTask(VideoTask) - Static method in class mgui.interfaces.graphics.video.VideoTaskType
- getTypeRange(int) - Static method in class mgui.util.Colours
- getTypeRange(int, ColorSpace) - Static method in class mgui.util.Colours
- getTypeRange(ColorModel) - Static method in class mgui.util.Colours
- getTypeRange(DataType) - Static method in class mgui.util.Colours
- getTypes() - Method in class mgui.interfaces.maps.TypeMap
- getTypeStr() - Method in class mgui.datasources.DataField
- getTypeStr() - Method in class mgui.interfaces.maps.TypeMap
- getTypeStr(InterfaceGraphic.GraphicType) - Static method in class mgui.interfaces.graphics.InterfaceGraphic
- getTypeString() - Method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
- getUID() - Static method in class mgui.interfaces.InterfaceSession
-
Returns a unique identifier for this session.
- getUnion(VertexSelection) - Method in class mgui.interfaces.shapes.mesh.VertexSelection
-
Returns a new selection which is the union of this object and
selection. - getUnion(ShapeSet, boolean) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
- getUnionBounds(Box3D, Box3D) - Static method in class mgui.geometry.util.GeometryFunctions
- getUnionBounds(Rect2D, Rect2D) - Static method in class mgui.geometry.util.GeometryFunctions
- getUnionSphere(Sphere3D, Sphere3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns a sphere that is the union of the two spheres s1 and s2
- getUniqueName(String) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
-
Finds a unique name by iteratively adding numbers to the end of
name. - getUnit() - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns the spatial unit for this shape set.
- getUnit() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
- getUnit() - Method in interface mgui.interfaces.shapes.ShapeSet
- getUnit() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
- getUnit() - Method in class mgui.neuro.graphs.NeuralNetNode
- getUnit(String) - Static method in class mgui.interfaces.InterfaceEnvironment
- getUnitCount() - Method in class mgui.neuro.networks.AbstractNeuralNet
- getUnitX() - Method in class mgui.interfaces.plots.sgt.SgtPlotObject
-
Returns the unit for the X values of this object.
- getUnitY() - Method in class mgui.interfaces.plots.sgt.SgtPlotObject
-
Returns the unit for the Y values of this object.
- getUnknownValue() - Method in class mgui.datasources.LinkedDataStream
-
Value to use when a key is not found in the linked source
- getUpdateable() - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getUpdateFieldStatement(String, DataField, DataField) - Static method in class mgui.datasources.util.DataSourceFunctions
-
Returns an SQL statement to update
old_fieldto matchnew_field. - getUpdateFieldStatement(String, DataField, DataField, DataSourceDriver) - Static method in class mgui.datasources.util.DataSourceFunctions
-
Returns an SQL statement to update
old_fieldto matchnew_field. - getUpVector() - Method in class mgui.interfaces.maps.Camera3D
- getUrl() - Method in class mgui.datasources.DataConnection
- getUrl() - Method in class mgui.datasources.DataSourceDriver
- getUrl() - Method in class mgui.interfaces.datasources.DataSourceDialogPanel
- getUrl(String) - Static method in class mgui.datasources.DataSourceDrivers
- getURL() - Method in class mgui.io.FileWriter
- getUrlFromName(String) - Method in class mgui.datasources.DataSourceDriver
- getUrlFromName(String) - Method in class mgui.datasources.odbc.JdbcOdbcDriver
- getUrlFromName(String) - Method in class mgui.datasources.postgresql.PostgreSQLDriver
- getUrlFromName(String) - Method in class mgui.datasources.tinysql.TinySQLDriver
- getUrlPrefix() - Method in class mgui.datasources.DataSourceDriver
- getUrlPrefix() - Method in class mgui.datasources.odbc.JdbcOdbcDriver
- getUrlPrefix() - Method in class mgui.datasources.tinysql.TinySQLDriver
- getUrlReference() - Method in class mgui.datasources.DataSourceDriver
- getUrlReference() - Method in interface mgui.interfaces.io.PersistentObject
-
Returns the URL reference for this persistent object; i.e., the location where its data were loaded and where it should be written.
- getUrlReference() - Method in class mgui.interfaces.shapes.InterfaceShape
- getUserObject() - Method in class mgui.interfaces.attributes.tree.AttributeTreeNode
- getUserObject() - Method in class mgui.interfaces.shapes.trees.Shape2DTreeNode
- getUserObject() - Method in class mgui.interfaces.shapes.trees.Shape3DTreeNode
- getV_Ca() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getV_K() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getV_L() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getV_Na() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getV_T() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getV_T_Ca() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getV_T_K() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getV_T_Na() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getV_T_V() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getV_T_Z() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getVal() - Method in class mgui.interfaces.tools.ToolInputEvent
- getValidTitle(String) - Method in class mgui.interfaces.InterfaceDisplayPanel
-
Returns a valid title for a new window in this display panel.
- getVals() - Method in class mgui.interfaces.shapes.mesh.MeshDataMaskOptionsDialog
- getValue() - Method in class mgui.datasources.DataField
- getValue() - Method in class mgui.interfaces.attributes.Attribute
-
Returns the value of this
Attribute. - getValue() - Method in class mgui.interfaces.attributes.AttributeSelectionMap
- getValue() - Method in class mgui.interfaces.Clipboard.Item
- getValue() - Method in class mgui.io.foreign.vol.CoordAttr
- getValue() - Method in class mgui.io.foreign.vol.StringAttr
- getValue() - Method in class mgui.numbers.MguiBoolean
- getValue() - Method in class mgui.numbers.MguiDouble
- getValue() - Method in class mgui.numbers.MguiFloat
- getValue() - Method in class mgui.numbers.MguiInteger
- getValue() - Method in class mgui.numbers.MguiLong
- getValue() - Method in interface mgui.numbers.MguiNumber
-
Returns the value of this number
- getValue() - Method in class mgui.numbers.MguiShort
- getValue(byte[], DataType, ByteOrder) - Static method in class mgui.io.util.IoFunctions
- getValue(int) - Method in class mgui.interfaces.maps.ValueMap
- getValue(int) - Method in class mgui.interfaces.variables.StringVectorInt
- getValue(int) - Method in class mgui.interfaces.variables.VectorInt
- getValue(int, int) - Method in class mgui.interfaces.variables.MatrixInt
- getValue(String) - Method in class mgui.interfaces.attributes.AttributeList
-
Get the current value of the attribute named
name. - getValue(String) - Method in class mgui.interfaces.queries.QueryResult
-
Returns the value of the specified property
- getValue(String) - Static method in class mgui.numbers.MguiDouble
- getValue(String) - Static method in class mgui.numbers.MguiFloat
- getValue(String) - Static method in class mgui.numbers.MguiInteger
- getValue(String) - Static method in class mgui.numbers.MguiLong
- getValue(String) - Static method in class mgui.numbers.MguiShort
- getValue(String, ShapeDataInputOptions.Format) - Method in class mgui.io.domestic.shapes.ShapeDataLoader
- getValue(List<Integer>) - Method in class mgui.interfaces.variables.MatrixInt
- getValue(List<Integer>) - Method in class mgui.interfaces.variables.StringVectorInt
- getValue(List<Integer>) - Method in class mgui.interfaces.variables.VariableInt
-
Returns the value at the given indices; throws an exception if they are out of bounds.
- getValue(List<Integer>) - Method in class mgui.interfaces.variables.VectorInt
- getValue(T, String) - Method in class mgui.datasources.LinkedDataStream
- getValueAt(int, int) - Method in class mgui.datasources.DataRecordSet
-
Returns the value at the given record and field indices.
- getValueAt(int, int) - Method in interface mgui.datasources.DataSet
- getValueAt(int, int) - Method in class mgui.interfaces.attributes.table.AttributeTableModel
- getValueAt(int, int) - Method in class mgui.interfaces.datasources.DataTableModel
- getValueAt(int, int) - Method in class mgui.interfaces.gui.RowNumberTable
- getValueAt(int, int) - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog.YTableModel
- getValueAt(int, int) - Method in class mgui.interfaces.plots.sgt.SgtScatterPlotDialog.XYTableModel
- getValueAt(int, int) - Method in class mgui.interfaces.queries.tables.QueryResultTableModel
- getValueAt(int, int) - Method in class mgui.interfaces.shapes.InterfaceShapesPanel.VertexSelectionTableModel
- getValueAt(int, int) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel.OverlayVolumeTableModel
- getValueAt(int, int) - Method in class mgui.interfaces.trees.TreeTableModelAdapter
- getValueAt(int, int) - Method in class mgui.interfaces.variables.tables.VariableTableModel
- getValueAt(int, int) - Method in class mgui.io.domestic.maps.NameMapOutDialogBox.TableModel
- getValueAt(int, int) - Method in class mgui.io.domestic.shapes.PointSet2DInputDialogBox.TableModel
- getValueAt(int, int) - Method in class mgui.io.domestic.shapes.PointSet3DDataInputDialogBox.TableModel
- getValueAt(int, int) - Method in class mgui.io.domestic.shapes.PointSet3DInputDialogBox.TableModel
- getValueAt(int, int) - Method in class mgui.io.domestic.shapes.PolygonSet3DInputDialogBox.TableModel
- getValueAt(int, int) - Method in class mgui.io.domestic.shapes.ShapeInputDialogBox.TableModel
- getValueAt(int, int) - Method in class mgui.io.domestic.shapes.ShapeModel3DOutputDialog.TableModel
- getValueAt(int, int) - Method in class mgui.io.domestic.shapes.SurfaceDataInputDialogBox.TableModel
- getValueAt(int, int) - Method in class mgui.io.domestic.shapes.SurfaceDataOutputDialogBox.TableModel
- getValueAt(int, int) - Method in class mgui.io.domestic.shapes.SurfaceInputDialogBox.TableModel
- getValueAt(int, int) - Method in class mgui.io.domestic.shapes.VectorSet3DInputDialogBox.TableModel
- getValueAt(int, int) - Method in class mgui.io.domestic.variables.MatrixInDialogBox.TableModel
- getValueAt(Object, int) - Method in interface mgui.interfaces.trees.TreeTableModel
-
Returns the value to be displayed for node
node, at column numbercolumn. - getValueAt(List<Integer>) - Method in class mgui.interfaces.variables.VariableInt
-
Returns the value of this variable at the given indices; throws an exception if they are out of bounds, or of a higher dimensionality than the variable supports.
- getValueAtDistance(float) - Method in class mgui.interfaces.shapes.paths.PathDataRenderer
- getValueAtVertex(int) - Method in class mgui.interfaces.shapes.VertexDataColumn
-
Returns the value in this column for the vertex at
index, as an {link MguiDouble} - getValueAtVoxel(int, int, int) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
-
Returns the value in this column at voxel index [i, j, k]
- getValueForObject(Object) - Static method in class mgui.numbers.NumberFunctions
-
Determines the numeric value of
objand returns it as adouble. - getValueFromRecordSetAt(int, int) - Method in class mgui.interfaces.datasources.DataTableModel
- getValueStr() - Method in class mgui.interfaces.attributes.Attribute
- getValueStr(String) - Method in class mgui.interfaces.attributes.Attribute
- getVar_Ca() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getVar_K() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getVar_Na() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getVar_V() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getVar_Z() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- getVariable() - Method in class mgui.interfaces.variables.tables.VariableTableModel
- getVariableByName(String) - Method in class mgui.interfaces.InterfaceWorkspace
-
Returns the variable in this workspace corresponding to the given name.
- getVariableCombo(InterfaceShape) - Static method in class mgui.interfaces.shapes.InterfaceShapesPanel.VertexSelectionTableModel
- getVariableNames() - Method in class mgui.interfaces.io.DataBridgeNamedXY
- getVariableNames() - Method in interface mgui.interfaces.io.DataInputStreamNamedXY
-
Returns a list of the channels in this stream.
- getVariableNames() - Method in interface mgui.interfaces.io.DataOutputStreamNamedXY
-
Returns a list of the channels in this stream.
- getVariableObjects() - Method in class mgui.interfaces.InterfaceWorkspace
-
Returns a list of all objects in this workspace which are instances of
VariableObject. - getVariables() - Method in class mgui.interfaces.InterfaceWorkspace
-
Returns a list of all variables currently in this workspace.
- getVariables() - Method in class mgui.interfaces.io.DataBridgeNamedXY
- getVariables() - Method in interface mgui.interfaces.math.VariableObject
-
Returns a list of variables for this object, which can be inserted into a mathematical expression.
- getVariables() - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns this shape's columns as a list of variables.
- getVariablesNode() - Method in class mgui.interfaces.InterfaceWorkspace
- getVariableType() - Method in interface mgui.interfaces.math.VariableObject
-
Specifies the class type of the object returned by
getVariableValues(). - getVariableType() - Method in class mgui.interfaces.shapes.InterfaceShape
- getVariableValue(String, int[]) - Method in interface mgui.interfaces.math.VariableObject
-
Returns the value of a variable in this object, at the specified element location.
- getVariableValue(String, int[]) - Method in class mgui.interfaces.shapes.InterfaceShape
- getVariableValues(String) - Method in interface mgui.interfaces.math.VariableObject
-
Returns an object containing the set of values for
variable. - getVariableValues(String) - Method in class mgui.interfaces.shapes.InterfaceShape
- getVector() - Method in class mgui.geometry.Radius2D
- getVector() - Method in class mgui.geometry.Vector2D
- getVector() - Method in class mgui.geometry.Vector3D
- getVector() - Method in class mgui.interfaces.shapes.Vector2DInt
- getVector() - Method in class mgui.interfaces.shapes.Vector3DInt
- getVector(Point2f, Point2f) - Static method in class mgui.geometry.util.GeometryFunctions
- getVector2d(String) - Static method in class mgui.interfaces.xml.XMLFunctions
- getVector3d(String) - Static method in class mgui.interfaces.xml.XMLFunctions
- getVector3f(FloatTuple) - Method in class mgui.io.foreign.wavefront.WavefrontSurfaceLoader
- getVector3f(String) - Static method in class mgui.interfaces.xml.XMLFunctions
- getVectorAngle(Vector2f) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns the angle that a 2D vector makes with the x-axis.
- getVectorEndpoint(Point2f, Vector2f) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns the endpoint of a vector starting at
startPt. - getVectorFromAngles(double, double) - Static method in class mgui.geometry.util.GeometryFunctions
- getVectorRotation(Vector3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines the rotation that converts [1, 0, 0] to
vector. - getVectors() - Method in class mgui.interfaces.shapes.VectorSet3DInt
- getVectorSet() - Method in class mgui.interfaces.shapes.Vector3DInt
- getVectorStr(Tuple2d, int) - Static method in class mgui.interfaces.xml.XMLFunctions
- getVectorStr(Tuple2f, int) - Static method in class mgui.interfaces.xml.XMLFunctions
- getVectorTransform(Matrix4d, Vector3d) - Static method in class mgui.geometry.util.GeometryFunctions
- getVersion() - Static method in class mgui.interfaces.InterfaceEnvironment
- getVertex(int) - Method in class mgui.geometry.Box3D
- getVertex(int) - Method in class mgui.geometry.Circle2D
- getVertex(int) - Method in class mgui.geometry.Cube3D
- getVertex(int) - Method in class mgui.geometry.Ellipse2D
- getVertex(int) - Method in class mgui.geometry.Graph3D
- getVertex(int) - Method in class mgui.geometry.Grid3D
-
Returns the midpoint of the voxel identified by
i, where i is determined by the order s < t < r. - getVertex(int) - Method in class mgui.geometry.LineSegment2D
- getVertex(int) - Method in class mgui.geometry.LineSegment3D
- getVertex(int) - Method in class mgui.geometry.Mesh3D
- getVertex(int) - Method in class mgui.geometry.Plane3D
- getVertex(int) - Method in class mgui.geometry.Point2D
- getVertex(int) - Method in class mgui.geometry.PointSet2D
- getVertex(int) - Method in class mgui.geometry.PointSet3D
- getVertex(int) - Method in class mgui.geometry.Polygon2D
- getVertex(int) - Method in class mgui.geometry.Polygon3D
- getVertex(int) - Method in class mgui.geometry.Radius2D
- getVertex(int) - Method in class mgui.geometry.Rect2D
- getVertex(int) - Method in class mgui.geometry.Rect3D
- getVertex(int) - Method in class mgui.geometry.Shape2D
- getVertex(int) - Method in class mgui.geometry.Shape3D
-
Returns the vertex at the specified index as a
Point3f. - getVertex(int) - Method in class mgui.geometry.Sphere3D
- getVertex(int) - Method in class mgui.geometry.Text2D
- getVertex(int) - Method in class mgui.geometry.Triangle2D
- getVertex(int) - Method in class mgui.geometry.Triangle3D
- getVertex(int) - Method in class mgui.geometry.Vector2D
- getVertex(int) - Method in class mgui.geometry.Vector3D
- getVertex(int) - Method in class mgui.interfaces.shapes.Shape2DInt
- getVertex(int) - Method in class mgui.interfaces.shapes.Shape3DInt
-
Returns the vertex at index
i. - getVertex(int) - Method in class mgui.morph.sections.RadialRep2D
- getVertexAlpha(int) - Method in class mgui.interfaces.shapes.PointSet3DInt
- getVertexAppearance(int) - Method in class mgui.interfaces.shapes.PointSet3DInt
- getVertexAppearance(int) - Method in class mgui.interfaces.shapes.Shape3DInt
-
Returns the appearance of vertex i.
- getVertexAppearance(AbstractGraphNode) - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
- getVertexByLabel(String) - Method in class mgui.interfaces.graphs.DefaultGraph
-
Returns the node corresponding to
label. - getVertexColour() - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns the colour of this shape's vertices.
- getVertexColour() - Method in class mgui.interfaces.shapes.Shape2DInt
- getVertexColour() - Method in class mgui.interfaces.shapes.Shape3DInt
- getVertexColour(int) - Method in class mgui.interfaces.shapes.PointSet3DInt
- getVertexColour(int) - Method in class mgui.interfaces.shapes.Shape3DInt
-
Returns the colour of vertex i; depends on whether the
ShowDataattribute istrue, and this shape has a current vertex data column. - getVertexColour(AbstractGraphNode) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt
- getVertexColour(AbstractGraphNode) - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
- getVertexCount() - Method in class mgui.geometry.Mesh3D
- getVertexCount() - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns the number of vertices defining the geometry of this shape.
- getVertexCount() - Method in class mgui.interfaces.shapes.Shape2DInt
- getVertexCount() - Method in class mgui.interfaces.shapes.Shape3DInt
- getVertexData() - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns a live version of the data in the current column.
- getVertexData(String) - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns a live version of the data in
column. - getVertexData(String) - Method in class mgui.interfaces.shapes.Shape2DInt
- getVertexData(String) - Method in class mgui.interfaces.shapes.Vector3DInt
- getVertexDataColumn(String) - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns the vertex data column associated with
name. - getVertexDataColumn(String) - Method in class mgui.interfaces.shapes.Shape2DInt
- getVertexDataColumnCount() - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns the number of vertex data columns associated with this shape.
- getVertexDataColumnNames() - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns a list of the names of all vertex data columns.
- getVertexDataColumnNames() - Method in class mgui.interfaces.shapes.Shape2DInt
- getVertexDataColumnNode(VertexDataColumn) - Method in class mgui.interfaces.shapes.trees.ShapeTreeNode
- getVertexDataColumns() - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns a list of all vertex data columns.
- getVertexDataColumns() - Method in class mgui.interfaces.shapes.Shape2DInt
- getVertexDataMap() - Method in class mgui.interfaces.shapes.InterfaceShape
-
Retrieves a hash map containing the vertex-wise data associated with this shape.
- getVertexDataMap() - Method in class mgui.interfaces.shapes.Shape2DInt
- getVertexDataNode() - Method in class mgui.interfaces.shapes.trees.ShapeTreeNode
- getVertexIndex(int[]) - Method in class mgui.interfaces.shapes.Volume3DInt
-
Obtains an absolute (vertex) index for the specified voxel indices
- getVertexIndex(int, int, int) - Method in class mgui.interfaces.shapes.Volume3DInt
-
Obtains an absolute (vertex) index for the specified voxel indices
- getVertexLabeller() - Static method in class mgui.interfaces.graphs.util.GraphFunctions
-
Returns a
Transformerobject which produces a label for a vertex. - getVertexScale() - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns the scale of this shape's vertices
- getVertexScale() - Method in class mgui.interfaces.shapes.PointSet2DInt
- getVertexScale() - Method in class mgui.interfaces.shapes.Shape2DInt
- getVertexScale() - Method in class mgui.interfaces.shapes.Shape3DInt
- getVertexScale(int) - Method in class mgui.interfaces.shapes.Shape3DInt
-
Returns the scale for vertex i; this depends on whether
ScaleVertexValuesis set. - getVertexScale(AbstractGraphNode) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt
- getVertexScale(AbstractGraphNode) - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
- getVertexSelection() - Method in class mgui.interfaces.shapes.InterfaceShape
-
Returns a list of the currently selected vertices for this shape.
- getVertexSelection() - Method in class mgui.interfaces.shapes.Shape2DInt
-
TODO: implement me
- getVertexSelection() - Method in class mgui.interfaces.shapes.Shape3DInt
- getVertexShape() - Method in class mgui.interfaces.shapes.Shape2DInt
- getVertexShape(AbstractGraphNode) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt
- getVertexShape(AbstractGraphNode) - Method in class mgui.interfaces.shapes.PointSet2DInt
- getVertexShapes() - Static method in class mgui.interfaces.InterfaceEnvironment
-
Returns a map of vertex shapes.
- getVertexWiseCurvature(Mesh3D, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Computes the mean curvature at each node in the mesh.
- getVertexWiseCurvature_bak(Mesh3D, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Computes the mean curvature at each node in the mesh.
- getVertexWiseCurvatureBak(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
- getVertices() - Method in class mgui.geometry.Box3D
- getVertices() - Method in class mgui.geometry.Circle2D
- getVertices() - Method in class mgui.geometry.Cube3D
- getVertices() - Method in class mgui.geometry.Ellipse2D
- getVertices() - Method in class mgui.geometry.Graph3D
- getVertices() - Method in class mgui.geometry.LineSegment2D
- getVertices() - Method in class mgui.geometry.LineSegment3D
- getVertices() - Method in class mgui.geometry.Mesh3D
- getVertices() - Method in class mgui.geometry.Plane3D
- getVertices() - Method in class mgui.geometry.Point2D
- getVertices() - Method in class mgui.geometry.PointSet2D
- getVertices() - Method in class mgui.geometry.PointSet3D
- getVertices() - Method in class mgui.geometry.Polygon2D
- getVertices() - Method in class mgui.geometry.Polygon3D
- getVertices() - Method in class mgui.geometry.Radius2D
- getVertices() - Method in class mgui.geometry.Rect2D
- getVertices() - Method in class mgui.geometry.Rect3D
- getVertices() - Method in class mgui.geometry.Shape2D
- getVertices() - Method in class mgui.geometry.Shape3D
-
Returns a list of this shape's nodes as
Point3f's. - getVertices() - Method in class mgui.geometry.Sphere3D
- getVertices() - Method in class mgui.geometry.Text2D
- getVertices() - Method in class mgui.geometry.Triangle2D
- getVertices() - Method in class mgui.geometry.Triangle3D
- getVertices() - Method in class mgui.geometry.Vector2D
- getVertices() - Method in class mgui.geometry.Vector3D
- getVertices() - Method in class mgui.interfaces.shapes.queries.InterfaceShapeQuery
- getVertices() - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getVertices() - Method in class mgui.interfaces.shapes.Shape2DInt
- getVertices() - Method in class mgui.interfaces.shapes.Shape3DInt
- getVertices() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
- getVertices() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
-
Returns a list of all nodes of all members in this set, including all shapes in all subsets.
- getVertices() - Method in class mgui.morph.sections.RadialRep2D
- getVertices(ArrayList<Point2f>) - Method in class mgui.geometry.Shape2D
- getVerticesAsPoints() - Method in class mgui.interfaces.shapes.PointSet3DInt
- getVerticesAsSpheres() - Method in class mgui.interfaces.shapes.PointSet3DInt
- getVerticesFromSection(ArrayList<Point2f>, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
- getVideo() - Method in class mgui.interfaces.graphics.video.xml.VideoXMLHandler
- getVideo() - Method in class mgui.io.domestic.videos.VideoInputOptions
- getVideo() - Method in class mgui.io.domestic.videos.VideoOutputOptions
- getVideo3DClock() - Method in class mgui.interfaces.graphics.InterfaceGraphicPanel
- getVideos() - Method in class mgui.interfaces.InterfaceWorkspace
- getVideos3D() - Method in class mgui.interfaces.InterfaceWorkspace
- getVideoTaskType(Class) - Static method in class mgui.interfaces.InterfaceEnvironment
- getVideoTaskTypes() - Static method in class mgui.interfaces.InterfaceEnvironment
-
Returns a dialog panel for the indicated driver, if one exists.
- getView() - Method in class au.edu.unsw.cse.Viewer
- getView() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getView3D() - Method in interface mgui.interfaces.graphics.InterfaceView3DObject
- getView3D() - Method in class mgui.interfaces.shapes.SectionSet3DInt
-
TODO: update coordinates to according to model's coordinate system public void setModel(ShapeModel3D m){ if (model == m) return; if (model != null) removeShapeListener(model); model = m; setID(model.idFactory.getID()); addShapeListener(model); Iterator
itr = sections.values().iterator(); while (itr.hasNext()) itr.next().setModel(m); } - getView3D(double) - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getView3D(String) - Method in class mgui.interfaces.InterfaceWorkspace
- getViewer() - Method in class au.edu.unsw.cse.VRMLState
- getViewer() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
-
Gets the
VisualizationViewerfor this window. - getViewingPlatform() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getViewPlatformTransform() - Method in class mgui.interfaces.maps.Map3D
- getViews() - Method in class mgui.io.domestic.views.View3DLoader.View3DXMLHandler
- getViews3D() - Method in class mgui.interfaces.InterfaceWorkspace
- getVisibility() - Method in class mgui.interfaces.shapes.Shape2DInt
-
Deprecated.
- getVolCount() - Method in class mgui.io.domestic.shapes.VolumeFileLoader
- getVolCount() - Method in class mgui.io.standard.nifti.NiftiVolumeLoader
- getVolume() - Method in class mgui.neuro.components.cortical.CorticalVolume
- getVolume() - Method in class mgui.neuro.components.CorticalVolume
- getVolume(String) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
- getVolume3D() - Method in class mgui.io.domestic.shapes.VolumeFileLoader
- getVolume3D() - Method in class mgui.io.foreign.vol.VolFileLoader
- getVolume3D(int) - Method in class mgui.io.domestic.shapes.VolumeFileLoader
-
Load the volume at time point t.
- getVolume3D(int) - Method in class mgui.io.foreign.vol.VolFileLoader
-
Return a Grid3D object representing the geometrical boundary of this volume
- getVolume3D(int, ProgressUpdater) - Method in class mgui.io.domestic.shapes.VolumeFileLoader
-
Creates and returns a grid based on the metadata.
- getVolume3D(VolumeInputOptions) - Method in class mgui.io.domestic.shapes.VolumeFileLoader
-
Creates and returns a grid based on the parameters in
options. - getVolume3D(VolumeInputOptions, int, ProgressUpdater) - Method in class mgui.io.domestic.shapes.VolumeFileLoader
-
Creates and returns a grid based on the metadata.
- getVolume3DCustom(VolumeInputOptions, int, ProgressUpdater) - Method in class mgui.io.domestic.shapes.VolumeFileLoader
-
Creates and returns a grid based on the parameters in
options. - getVolume3DInt(Volume3DInt) - Method in class mgui.io.domestic.shapes.VolumeFileInterface
- getVolumeAndArea(Mesh3D, ArrayList<MguiNumber>, ArrayList<MguiNumber>, double) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Given a mesh and a set of thickness values, returns an area and a volume calculation (in that order).
- getVolumeAsBytes(Volume3DInt) - Method in class mgui.io.domestic.shapes.VolumeFileDataSource
- getVolumeMetadata() - Method in class mgui.io.domestic.shapes.VolumeFileLoader
-
Returns a set of metadata describing the current volume file.
- getVolumeMetadata() - Method in class mgui.io.foreign.fsl.FSLVolumeLoader
- getVolumeMetadata() - Method in class mgui.io.foreign.interfile.InterfileLoader
- getVolumeMetadata() - Method in class mgui.io.foreign.vol.VolFileLoader
- getVolumeMetadata() - Method in class mgui.io.foreign.wunil.WunilVolumeLoader
- getVolumeMetadata() - Method in class mgui.io.standard.nifti.NiftiVolumeLoader
- getVolumeOptions() - Method in class mgui.interfaces.neuro.CorticalThicknessDialogBox
- getVolumeSpaceMidPoint(Grid3D, int) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Returns the midpoint of this voxel in
grid's coordinate space. - getVolumeSpaceMidPoint(Grid3D, int[]) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Returns the midpoint of this voxel in
grid's coordinate space. - getVoxelDim() - Method in interface mgui.interfaces.shapes.volume.VolumeMetadata
-
Returns the intravoxel dimension (e.g., time or vector/tensor information)
- getVoxelDim() - Method in class mgui.io.foreign.fsl.FSLVolumeMetadata
- getVoxelDim() - Method in class mgui.io.foreign.wunil.WunilDataset
- getVoxelDim() - Method in class mgui.io.standard.nifti.NiftiMetadata
- getVoxelMidPoint(int) - Method in class mgui.geometry.Grid3D
-
Returns the grid coordinate at the absolute index
idx - getVoxelMidPoint(int[]) - Method in class mgui.geometry.Grid3D
-
Returns the geometric midpoint of
voxel - getVoxelMidPoint(int, int, int) - Method in class mgui.geometry.Grid3D
-
Returns the geometric midpoint of the grid coordinate i, j, k
- getVoxelsAsDouble() - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
-
Returns the voxel-wise data as a 3D array of type
double - getVRMLColor(int) - Method in class au.edu.unsw.cse.View3d
-
get a colour for VRML objects
- getVRMLColor(int) - Method in class au.edu.unsw.cse.VRMLState
- getWeight() - Method in class mgui.graphs.networks.AbstractNetworkGraphConnection
- getWeight() - Method in class mgui.interfaces.graphs.DefaultGraphEdge
- getWeight() - Method in interface mgui.interfaces.graphs.WeightedGraphEdge
- getWeight() - Method in class mgui.morph.sections.MorphNodeMap2D
- getWeight() - Method in class mgui.neuro.components.cortical.AbstractCorticalConnection
- getWeight() - Method in class mgui.neuro.components.simple.SimpleSynapse
- getWeight() - Method in interface mgui.neuro.components.types.WeightedSynapse
- getWeight() - Method in class mgui.neuro.graphs.NeuralNetConnection
- getWeight(AbstractNetworkGraphNode) - Method in class mgui.graphs.networks.AbstractNetworkGraphNode
- getWeight(AbstractNetworkGraphNode) - Method in class mgui.neuro.graphs.CorticalNetworkGraphNode
- getWeight(NeuralNetNode) - Method in class mgui.neuro.graphs.NeuralNetNode
-
Returns the weight of the connection of this node with the target node, if it exists.
- getWeightedBasicNormalStats(ArrayList<MguiNumber>, ArrayList<MguiNumber>) - Static method in class mgui.stats.StatFunctions
-
Return statistics describing a set of weighted normally distributed values ordered as follows (see http://en.wikipedia.org/wiki/Weighted_mean): mean sum standard deviation sum of squares
- getWeightTransformer() - Static method in class mgui.interfaces.graphs.DefaultGraphEdge
- getWidth() - Method in class mgui.geometry.Rect2D
-
Returns the width of this rectangle, which is a distance along
rotation. - getWidth() - Method in class mgui.geometry.Rect3D
- getWidth() - Method in class mgui.interfaces.layouts.LayoutItem
-
Returns the width of this item, in document units.
- getWildcardFiles(File, String) - Static method in class mgui.pipelines.PipelineFunctions
-
Returns a list of all files that match the specified wildcard
pattern. - getWildcardFiles(File, String, HashMap<String, ArrayList<String>>) - Static method in class mgui.pipelines.PipelineFunctions
-
Returns a list of all files that match the specified wildcard
pattern. - getWildcardPathFiles(File, String) - Static method in class mgui.io.util.IoFunctions
-
Matches a wildcard string to all paths, relative to the directory
root. - getWindow(int) - Method in class mgui.interfaces.InterfaceSplitPanel
-
Returns the window on the specified side of the panel; where 0 = left, 1 = right.
- getWindowMid() - Method in class mgui.image.util.WindowedColourModel
- getWindows() - Method in class mgui.interfaces.InterfaceDisplayPanel
-
Returns a list of the windows contained in this display panel.
- getWindows() - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
- getWindows(int, int) - Method in class mgui.interfaces.InterfaceSplitPanel
- getWindowsBreadthFirst() - Method in class mgui.interfaces.InterfaceSplitPanel
-
Returns a breadth-first list of windows contained by this split panel; meaning that the first windows are on the top-most level and later windows are increasingly deep in the nesting tree.
- getWindowsDepthFirst() - Method in class mgui.interfaces.InterfaceDisplayPanel
-
Returns a list of the windows contained in this display panel.
- getWindowsDepthFirst() - Method in class mgui.interfaces.InterfaceSplitPanel
-
Returns a depth-first list of all windows contained by this split panel or its nested panels (left or top first).
- getWindowsDepthFirst() - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
- getWindowWidth() - Method in class mgui.image.util.WindowedColourModel
- getWorkingSelection() - Method in class mgui.interfaces.shapes.ShapeModel3D
-
Returns the working selection set for this model.
- getWorkspace() - Method in class mgui.datasources.DataSource
- getWorkspace() - Method in class mgui.interfaces.InterfaceDisplayPanel
- getWorkspace() - Static method in class mgui.interfaces.InterfaceSession
-
Returns the workspace for the current session.
- getWorkspaceInstance() - Static method in class mgui.interfaces.InterfaceEnvironment
- getWrapLines() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
- getWriterComplement() - Method in class mgui.io.domestic.shapes.Mesh3DLoader
- getWriterComplement() - Method in class mgui.io.FileLoader
-
Returns the
InterfaceIOTypeof aFileWriterwhich is the complement of this loader; i.e., writes what this loader reads with identical encoding. - getWriterComplement() - Method in class mgui.io.foreign.minc.MincSurfaceLoader
- getWriterComplement() - Method in class mgui.io.standard.gifti.GiftiSurfaceLoader
- getWriterComplement() - Method in class mgui.io.standard.nifti.NiftiVolumeLoader
- getWriterIOType() - Method in class mgui.interfaces.projects.ProjectDataItem
- getWriterOptions() - Method in class mgui.datasources.DataSourceDriver
- getWriterOptions() - Method in interface mgui.interfaces.io.PersistentObject
-
Returns the options used to last write this object, if available
- getWriterOptions() - Method in class mgui.interfaces.shapes.InterfaceShape
- getX() - Method in class mgui.interfaces.plots.XYData
-
Returns the X value for this pair (cloned)
- getXAngle(Vector3d) - Static method in class mgui.geometry.util.GeometryFunctions
- getXAngle(Vector3f) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns angle of
vectorwith x-axis. - getXColour() - Method in class mgui.interfaces.shapes.TensorVolume3DInt
- getXData() - Method in class mgui.interfaces.io.DataBridgeXY
- getXData() - Method in interface mgui.interfaces.io.DataInputStreamXY
-
Returns the X data as a value of type
T. - getXDim() - Method in class mgui.io.foreign.vol.VolFileLoader
-
Gets the X dimension of the volume
- getXML() - Method in class mgui.datasources.DataConnection
- getXML() - Method in class mgui.datasources.DataField
- getXML() - Method in class mgui.datasources.DataQuery
- getXML() - Method in class mgui.datasources.DataSource
- getXML() - Method in class mgui.datasources.DataTable
- getXML() - Method in class mgui.datasources.DataTableSet
- getXML() - Method in class mgui.geometry.Shape2D
- getXML() - Method in class mgui.geometry.Shape3D
- getXML() - Method in class mgui.image.util.WindowedColourModel
- getXML() - Method in class mgui.interfaces.attributes.Attribute
- getXML() - Method in class mgui.interfaces.attributes.AttributeList
- getXML() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
- getXML() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
- getXML() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getXML() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
- getXML() - Method in class mgui.interfaces.graphics.video.Video
- getXML() - Method in class mgui.interfaces.graphics.video.VideoTask
- getXML() - Method in class mgui.interfaces.graphics.View3D
- getXML() - Method in class mgui.interfaces.graphs.AbstractGraphEdge
- getXML() - Method in class mgui.interfaces.graphs.AbstractGraphNode
- getXML() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
- getXML() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
- getXML() - Method in class mgui.interfaces.InterfaceDisplayPanel
- getXML() - Method in class mgui.interfaces.InterfaceWorkspace
- getXML() - Method in class mgui.interfaces.layouts.InterfaceLayoutWindow
- getXML() - Method in class mgui.interfaces.layouts.LayoutItem
- getXML() - Method in class mgui.interfaces.maps.Camera3D
- getXML() - Method in class mgui.interfaces.maps.ColourMap
- getXML() - Method in class mgui.interfaces.maps.Map2D
- getXML() - Method in class mgui.interfaces.maps.Map3D
- getXML() - Method in class mgui.interfaces.maps.NameMap
- getXML() - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
- getXML() - Method in class mgui.interfaces.plots.InterfacePlotDisplay
- getXML() - Method in class mgui.interfaces.projects.InterfaceProject
- getXML() - Method in class mgui.interfaces.projects.ProjectDirectory
- getXML() - Method in class mgui.interfaces.projects.ProjectInstance
- getXML() - Method in class mgui.interfaces.shapes.InterfaceShape
- getXML() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
- getXML() - Method in class mgui.interfaces.shapes.ShapeModel3D
- getXML() - Method in class mgui.interfaces.shapes.VertexDataColumn
- getXML() - Method in class mgui.interfaces.tables.InterfaceDataTable
- getXML() - Method in class mgui.interfaces.variables.VariableInt
- getXML() - Method in interface mgui.interfaces.xml.XMLObject
-
Returns this object's XML representation as a single string.
- getXML() - Method in class mgui.io.InterfaceIOOptions
- getXML() - Method in class mgui.neuro.graphs.CorticalNetworkGraphNode
- getXML() - Method in class mgui.neuro.imaging.camino.CaminoProject
- getXML() - Method in class mgui.numbers.MguiBoolean
- getXML() - Method in class mgui.numbers.MguiDouble
- getXML() - Method in class mgui.numbers.MguiFloat
- getXML() - Method in class mgui.numbers.MguiInteger
- getXML() - Method in class mgui.numbers.MguiLong
- getXML() - Method in class mgui.numbers.MguiShort
- getXML() - Method in class mgui.pipelines.PipelineProcess
- getXML() - Method in class mgui.pipelines.PipelineTask
- getXML() - Method in class mgui.util.Colour
- getXML(int) - Method in class mgui.datasources.DataConnection
- getXML(int) - Method in class mgui.datasources.DataField
- getXML(int) - Method in class mgui.datasources.DataQuery
- getXML(int) - Method in class mgui.datasources.DataSource
- getXML(int) - Method in class mgui.datasources.DataTable
- getXML(int) - Method in class mgui.datasources.DataTableSet
- getXML(int) - Method in class mgui.geometry.Mesh3D
- getXML(int) - Method in class mgui.geometry.Plane3D
- getXML(int) - Method in class mgui.geometry.Shape2D
- getXML(int) - Method in class mgui.geometry.Shape3D
- getXML(int) - Method in class mgui.image.util.WindowedColourModel
- getXML(int) - Method in class mgui.interfaces.attributes.Attribute
- getXML(int) - Method in class mgui.interfaces.attributes.AttributeList
- getXML(int) - Method in class mgui.interfaces.attributes.video.AttributeObjectVideoTask
- getXML(int) - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
- getXML(int) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
- getXML(int) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getXML(int) - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
- getXML(int) - Method in class mgui.interfaces.graphics.video.RotateView3DTask
- getXML(int) - Method in class mgui.interfaces.graphics.video.SetView3DTask
- getXML(int) - Method in class mgui.interfaces.graphics.video.Video
- getXML(int) - Method in class mgui.interfaces.graphics.video.VideoTask
- getXML(int) - Method in class mgui.interfaces.graphics.View3D
- getXML(int) - Method in class mgui.interfaces.graphs.AbstractGraphEdge
- getXML(int) - Method in class mgui.interfaces.graphs.AbstractGraphNode
- getXML(int) - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
- getXML(int) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
- getXML(int) - Method in class mgui.interfaces.InterfaceDisplayPanel
- getXML(int) - Method in class mgui.interfaces.InterfaceWorkspace
- getXML(int) - Method in class mgui.interfaces.layouts.InterfaceLayoutWindow
- getXML(int) - Method in class mgui.interfaces.layouts.LayoutItem
- getXML(int) - Method in class mgui.interfaces.maps.Camera3D
- getXML(int) - Method in class mgui.interfaces.maps.ColourMap
- getXML(int) - Method in class mgui.interfaces.maps.ContinuousColourMap
- getXML(int) - Method in class mgui.interfaces.maps.DiscreteColourMap
- getXML(int) - Method in class mgui.interfaces.maps.Map2D
- getXML(int) - Method in class mgui.interfaces.maps.Map3D
- getXML(int) - Method in class mgui.interfaces.maps.NameMap
- getXML(int) - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
- getXML(int) - Method in class mgui.interfaces.plots.InterfacePlotDisplay
- getXML(int) - Method in class mgui.interfaces.projects.InterfaceProject
- getXML(int) - Method in class mgui.interfaces.projects.ProjectDirectory
- getXML(int) - Method in class mgui.interfaces.projects.ProjectInstance
- getXML(int) - Method in class mgui.interfaces.shapes.InterfaceShape
- getXML(int) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
- getXML(int) - Method in class mgui.interfaces.shapes.ShapeModel3D
- getXML(int) - Method in class mgui.interfaces.shapes.VertexDataColumn
- getXML(int) - Method in class mgui.interfaces.tables.InterfaceDataTable
- getXML(int) - Method in class mgui.interfaces.variables.VariableInt
- getXML(int) - Method in interface mgui.interfaces.xml.XMLObject
-
Returns this object's XML representation as a single string.
- getXML(int) - Method in class mgui.io.domestic.shapes.SurfaceOutputOptions
- getXML(int) - Method in class mgui.io.domestic.shapes.VolumeOutputOptions
- getXML(int) - Method in class mgui.io.InterfaceIOOptions
- getXML(int) - Method in class mgui.neuro.imaging.camino.CaminoProject
- getXML(int) - Method in class mgui.numbers.MguiBoolean
- getXML(int) - Method in class mgui.numbers.MguiDouble
- getXML(int) - Method in class mgui.numbers.MguiFloat
- getXML(int) - Method in class mgui.numbers.MguiInteger
- getXML(int) - Method in class mgui.numbers.MguiLong
- getXML(int) - Method in class mgui.numbers.MguiShort
- getXML(int) - Method in class mgui.pipelines.InterfacePipeline
- getXML(int) - Method in class mgui.pipelines.JavaProcess
- getXML(int) - Method in class mgui.pipelines.NativeProcess
- getXML(int) - Method in class mgui.pipelines.PipelineProcess
- getXML(int) - Method in class mgui.pipelines.PipelineProcessInstance
- getXML(int) - Method in class mgui.pipelines.PipelineTask
- getXML(int) - Method in class mgui.pipelines.TaskParameter
- getXML(int) - Method in class mgui.pipelines.TaskParameterInstance
- getXML(int) - Method in class mgui.util.Colour
- getXML(int) - Method in class mgui.util.Colour3f
- getXML(int) - Method in class mgui.util.Colour4f
- getXML(int, int) - Method in class mgui.interfaces.graphs.AbstractGraphNode
-
Get XML representation for the given index.
- getXML(int, int, int) - Method in class mgui.interfaces.graphs.AbstractGraphEdge
-
Returns an XML representation for this edge given from and to indices.
- getXML(int, int, int) - Method in class mgui.interfaces.graphs.DefaultGraphEdge
- getXML(int, XMLObject.XMLType) - Method in class mgui.interfaces.shapes.InterfaceShape
- getXML(int, XMLObject.XMLType) - Method in class mgui.interfaces.shapes.Mesh3DInt
- getXML(int, XMLObject.XMLType) - Method in class mgui.interfaces.shapes.PointSet3DInt
- getXML(int, XMLObject.XMLType) - Method in class mgui.interfaces.shapes.SectionSet3DInt
- getXML(int, XMLObject.XMLType) - Method in class mgui.interfaces.shapes.ShapeModel3D
- getXML(int, XMLObject.XMLType) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
- getXMLCodedString(String) - Static method in class mgui.interfaces.xml.XMLFunctions
-
Encodes a string into an XML-friendly line by replacing angle brackets with their escape characters: < --> < > --> >
- getXMLDecodedString(String) - Static method in class mgui.interfaces.xml.XMLFunctions
-
Decodes a string from an XML-friendly line by replacing angle brackets escape characters with their characters.
- getXMLFileFilter() - Static method in class mgui.interfaces.xml.XMLFunctions
- getXMLForAttributeObject(Object, int) - Static method in class mgui.interfaces.xml.XMLFunctions
-
Returns a string representing
objin anAttribute. - getXMLForObject(Object, int) - Static method in class mgui.interfaces.xml.XMLFunctions
- getXMLForPoint2f(Point2f, int) - Static method in class mgui.interfaces.xml.XMLFunctions
- getXMLFriendlyString(String) - Static method in class mgui.interfaces.xml.XMLFunctions
-
Returns a string which is an XML-friendly version of
string, for insertion into a tag value. - getXMLHeader() - Static method in class mgui.interfaces.InterfaceEnvironment
- getXMLHeader() - Static method in class mgui.interfaces.xml.XMLFunctions
-
Returns the XML header from the current environment
- getXMLHeader(int) - Method in class mgui.io.domestic.shapes.SurfaceOutputOptions
- getXMLInstance(Attributes) - Static method in class mgui.interfaces.attributes.Attribute
- getXMLInstance(Attributes) - Static method in class mgui.interfaces.attributes.AttributeList
- getXMLInstance(Attributes) - Static method in class mgui.interfaces.attributes.video.AttributeObjectVideoTask
- getXMLInstance(Attributes) - Static method in class mgui.interfaces.graphics.video.RotateView3DTask
- getXMLInstance(Attributes) - Static method in class mgui.interfaces.graphics.video.SetView3DTask
- getXMLInstance(Attributes) - Static method in class mgui.interfaces.graphics.video.Video3D
- getXMLInstance(Attributes) - Static method in class mgui.interfaces.graphics.View3D
- getXMLInstance(Attributes) - Method in class mgui.interfaces.maps.Camera3D
- getXMLInstance(Attributes) - Method in class mgui.interfaces.maps.ContinuousColourMap
- getXMLInstance(Attributes) - Static method in class mgui.interfaces.maps.DiscreteColourMap
- getXMLInstance(Attributes) - Method in class mgui.interfaces.maps.NameMap
- getXMLInstance(Attributes) - Static method in class mgui.numbers.MguiBoolean
- getXMLInstance(Attributes) - Static method in class mgui.numbers.MguiDouble
- getXMLInstance(Attributes) - Static method in class mgui.numbers.MguiFloat
- getXMLInstance(Attributes) - Static method in class mgui.numbers.MguiInteger
- getXMLInstance(Attributes) - Static method in class mgui.numbers.MguiLong
- getXMLInstance(Attributes) - Static method in class mgui.numbers.MguiShort
- getXMLInstance(Attributes) - Static method in class mgui.util.Colour1f
- getXMLInstance(Attributes) - Static method in class mgui.util.Colour2f
- getXMLInstance(Attributes) - Static method in class mgui.util.Colour3f
- getXMLInstance(Attributes) - Static method in class mgui.util.Colour4f
- getXMLSchema() - Method in class mgui.datasources.DataConnection
- getXMLSchema() - Method in class mgui.datasources.DataField
- getXMLSchema() - Method in class mgui.datasources.DataQuery
- getXMLSchema() - Method in class mgui.datasources.DataSource
- getXMLSchema() - Method in class mgui.datasources.DataTable
- getXMLSchema() - Method in class mgui.datasources.DataTableSet
- getXMLSchema() - Method in class mgui.geometry.Shape2D
- getXMLSchema() - Method in class mgui.geometry.Shape3D
- getXMLSchema() - Method in class mgui.image.util.WindowedColourModel
- getXMLSchema() - Method in class mgui.interfaces.attributes.Attribute
- getXMLSchema() - Method in class mgui.interfaces.attributes.AttributeList
- getXMLSchema() - Method in class mgui.interfaces.attributes.video.AttributeObjectVideoTask
- getXMLSchema() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
- getXMLSchema() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
- getXMLSchema() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- getXMLSchema() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
- getXMLSchema() - Method in class mgui.interfaces.graphics.video.RotateView3DTask
- getXMLSchema() - Method in class mgui.interfaces.graphics.video.SetView3DTask
- getXMLSchema() - Method in class mgui.interfaces.graphics.video.Video
- getXMLSchema() - Method in class mgui.interfaces.graphics.View3D
- getXMLSchema() - Method in class mgui.interfaces.graphs.AbstractGraphEdge
- getXMLSchema() - Method in class mgui.interfaces.graphs.AbstractGraphNode
- getXMLSchema() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
- getXMLSchema() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
- getXMLSchema() - Method in class mgui.interfaces.InterfaceDisplayPanel
- getXMLSchema() - Method in class mgui.interfaces.InterfaceWorkspace
- getXMLSchema() - Method in class mgui.interfaces.layouts.InterfaceLayoutWindow
- getXMLSchema() - Method in class mgui.interfaces.layouts.LayoutItem
- getXMLSchema() - Method in class mgui.interfaces.maps.Camera3D
- getXMLSchema() - Method in class mgui.interfaces.maps.ColourMap
- getXMLSchema() - Method in class mgui.interfaces.maps.Map2D
- getXMLSchema() - Method in class mgui.interfaces.maps.Map3D
- getXMLSchema() - Method in class mgui.interfaces.maps.NameMap
- getXMLSchema() - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
- getXMLSchema() - Method in class mgui.interfaces.plots.InterfacePlotDisplay
- getXMLSchema() - Method in class mgui.interfaces.projects.InterfaceProject
- getXMLSchema() - Method in class mgui.interfaces.projects.ProjectDirectory
- getXMLSchema() - Method in class mgui.interfaces.projects.ProjectInstance
- getXMLSchema() - Method in class mgui.interfaces.shapes.InterfaceShape
- getXMLSchema() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
- getXMLSchema() - Method in class mgui.interfaces.shapes.ShapeModel3D
- getXMLSchema() - Method in class mgui.interfaces.shapes.VertexDataColumn
- getXMLSchema() - Method in class mgui.interfaces.shapes.video.ChangeSectionVideoTask
- getXMLSchema() - Method in class mgui.interfaces.tables.InterfaceDataTable
- getXMLSchema() - Method in class mgui.interfaces.variables.VariableInt
- getXMLSchema() - Method in interface mgui.interfaces.xml.XMLObject
-
Returns the XML schema for this object's XML representation
- getXMLSchema() - Method in class mgui.io.InterfaceIOOptions
- getXMLSchema() - Method in class mgui.neuro.imaging.camino.CaminoProject
- getXMLSchema() - Method in class mgui.numbers.MguiBoolean
- getXMLSchema() - Method in class mgui.numbers.MguiDouble
- getXMLSchema() - Method in class mgui.numbers.MguiFloat
- getXMLSchema() - Method in class mgui.numbers.MguiInteger
- getXMLSchema() - Method in class mgui.numbers.MguiLong
- getXMLSchema() - Method in class mgui.numbers.MguiShort
- getXMLSchema() - Method in class mgui.pipelines.PipelineProcess
- getXMLSchema() - Method in class mgui.pipelines.PipelineTask
- getXMLSchema() - Method in class mgui.util.Colour
- getXMLStrForType(XMLObject.XMLType) - Static method in class mgui.interfaces.xml.XMLFunctions
-
Returns a String corresponding to the XMLObject.XMLType.
- getXMLTabbedString(String, int) - Static method in class mgui.interfaces.xml.XMLFunctions
-
Prepends all newline characters with the appropriate tab character, for friendlier XML output
- getXMLType() - Method in class mgui.io.domestic.graphs.GraphFileWriter
-
Gets the current XML type for this writer.
- getXMLTypeForStr(String) - Static method in class mgui.interfaces.xml.XMLFunctions
-
Returns the XMLObject.XMLType corresponding to
string. - getXMLUntabbedString(String, int) - Static method in class mgui.interfaces.xml.XMLFunctions
-
Removes all new-line tabs from an XML input string
- getXRange() - Method in class mgui.interfaces.plots.osp.InterfaceStripChart
- getXRotation(Vector4f, float) - Static method in class mgui.geometry.util.GeometryFunctions
- getY() - Method in class mgui.interfaces.plots.XYData
-
Returns the Y value for this pair (cloned)
- getY(int) - Method in class mgui.geometry.Grid3D
- getY(String) - Method in class mgui.interfaces.plots.PlotTimeSeriesDataSource
-
Returns the full set of Y data for the channel named
name. - getYAngle(Vector3d) - Static method in class mgui.geometry.util.GeometryFunctions
- getYAngle(Vector3f) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns angle of
vectorwith y-axis. - getYColour() - Method in class mgui.interfaces.shapes.TensorVolume3DInt
- getYData() - Method in class mgui.interfaces.io.DataBridgeXY
- getYData() - Method in interface mgui.interfaces.io.DataInputStreamXY
-
Returns the Y data for all channels, as a list of type
T. - getYData(int) - Method in class mgui.interfaces.io.DataBridgeXY
- getYData(int) - Method in interface mgui.interfaces.io.DataInputStreamXY
-
Returns the Y data for the i'th channel, as type
T. - getYData(String) - Method in class mgui.interfaces.io.DataBridgeNamedXY
- getYData(String) - Method in interface mgui.interfaces.io.DataInputStreamNamedXY
-
Returns the Y data for the channel named
channel, as a list of typeT. - getYDim() - Method in class mgui.io.foreign.vol.VolFileLoader
-
Gets the Y dimension of the volume
- getYRange() - Method in class mgui.interfaces.plots.osp.InterfaceStripChart
- getYRotation(Vector4f) - Static method in class mgui.geometry.util.GeometryFunctions
-
Rotate this plane about the Y axis
- getYRotation(Vector4f, float) - Static method in class mgui.geometry.util.GeometryFunctions
- getZAngle(Vector3d) - Static method in class mgui.geometry.util.GeometryFunctions
- getZAngle(Vector3f) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns angle of
vectorwith z-axis. - getZColour() - Method in class mgui.interfaces.shapes.TensorVolume3DInt
- getZDim() - Method in class mgui.io.foreign.vol.VolFileLoader
-
Gets the Z dimension of the volume
- getZeros(int) - Static method in class mgui.numbers.MguiDouble
- getZeroValue(int) - Static method in class mgui.image.util.WindowedColourModel
-
Returns the "zero" value for the given transfer type.
- getZoom() - Method in class mgui.interfaces.maps.Map
- getZoom() - Method in class mgui.interfaces.maps.Map2D
- getZoom() - Method in class mgui.interfaces.maps.Map3D
- getZRotation(Vector4f) - Static method in class mgui.geometry.util.GeometryFunctions
-
Rotate this plane about the Z axis
- getZRotation(Vector4f, float) - Static method in class mgui.geometry.util.GeometryFunctions
- GiftiInputOptions - Class in mgui.io.standard.gifti
-
Options specific for Gifti surfaces.
- GiftiInputOptions() - Constructor for class mgui.io.standard.gifti.GiftiInputOptions
- GiftiOutputOptions - Class in mgui.io.standard.gifti
-
Options for writing a surface to a Gifti format file.
- GiftiOutputOptions() - Constructor for class mgui.io.standard.gifti.GiftiOutputOptions
- GiftiOutputOptions.ByteOrder - Enum in mgui.io.standard.gifti
- GiftiOutputOptions.ColumnFormat - Enum in mgui.io.standard.gifti
- GiftiOutputOptions.GiftiEncoding - Enum in mgui.io.standard.gifti
- GiftiSurfaceInDialogBox - Class in mgui.io.standard.gifti
-
Dialog box for inputting a GIFTI-format surface.
- GiftiSurfaceInDialogBox() - Constructor for class mgui.io.standard.gifti.GiftiSurfaceInDialogBox
- GiftiSurfaceInDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.standard.gifti.GiftiSurfaceInDialogBox
- GiftiSurfaceLoader - Class in mgui.io.standard.gifti
-
Loads an XML-format GIFTI file.
- GiftiSurfaceLoader() - Constructor for class mgui.io.standard.gifti.GiftiSurfaceLoader
- GiftiSurfaceLoader(File) - Constructor for class mgui.io.standard.gifti.GiftiSurfaceLoader
- GiftiSurfaceOutDialogBox - Class in mgui.io.standard.gifti
-
Opotions dialog box for a Gifti surface write operation.
- GiftiSurfaceOutDialogBox() - Constructor for class mgui.io.standard.gifti.GiftiSurfaceOutDialogBox
- GiftiSurfaceOutDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.standard.gifti.GiftiSurfaceOutDialogBox
- GiftiSurfaceWriter - Class in mgui.io.standard.gifti
-
Writes a surface to Gifti format.
- GiftiSurfaceWriter() - Constructor for class mgui.io.standard.gifti.GiftiSurfaceWriter
- GiftiSurfaceWriter(File) - Constructor for class mgui.io.standard.gifti.GiftiSurfaceWriter
- GiftiXMLHandler - Class in mgui.io.standard.gifti.xml
-
XML handler for GIFTI format surface files.
- GiftiXMLHandler() - Constructor for class mgui.io.standard.gifti.xml.GiftiXMLHandler
- GiftiXMLHandler(Mesh3DInt) - Constructor for class mgui.io.standard.gifti.xml.GiftiXMLHandler
-
Instantiate this handler with a pre-defined mesh.
- GiftWrap - Class in au.edu.unsw.cse
- GiftWrap(Point3dObject3d[]) - Constructor for class au.edu.unsw.cse.GiftWrap
- GiftWrapQT - Class in au.edu.unsw.cse
- GiftWrapQT(Point3dObject3d[]) - Constructor for class au.edu.unsw.cse.GiftWrapQT
- glmax - Variable in class mgui.io.standard.nifti.Nifti1Dataset
- glmin - Variable in class mgui.io.standard.nifti.Nifti1Dataset
- gm_contains - Variable in class mgui.interfaces.neuro.CorticalThicknessOptions
- gm_mesh - Variable in class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt
- gradient_AP_A - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
- gradient_IS_S - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
- graph - Variable in class mgui.geometry.Graph2D
- graph - Variable in class mgui.geometry.Graph3D
- graph - Variable in class mgui.interfaces.graphs.InterfaceGraphDisplay
- graph_layout - Variable in class mgui.interfaces.shapes.graphs.Graph2DInt
- graph_map - Variable in class mgui.interfaces.plots.sgt.SgtPlotLayout
- graph_mouse - Variable in class mgui.interfaces.tools.graphs.ToolGraphTransform
- graph_names - Variable in class mgui.io.foreign.pajek.PajekGraphInputOptions
- graph_type - Variable in class mgui.interfaces.plots.sgt.SgtPlotLayout
- Graph2D - Class in mgui.geometry
-
Represents a graph as a 2D geometric shape.
- Graph2D() - Constructor for class mgui.geometry.Graph2D
- Graph2D(InterfaceAbstractGraph) - Constructor for class mgui.geometry.Graph2D
- Graph2D(InterfaceAbstractGraph, HashMap<AbstractGraphNode, Point2f>) - Constructor for class mgui.geometry.Graph2D
- Graph2DInt - Class in mgui.interfaces.shapes.graphs
-
Graph shape represented in R2.
- Graph2DInt() - Constructor for class mgui.interfaces.shapes.graphs.Graph2DInt
- Graph2DInt(Graph2D, Graph2DLayout<AbstractGraphNode, AbstractGraphEdge>) - Constructor for class mgui.interfaces.shapes.graphs.Graph2DInt
- Graph2DInt(Graph2D, Graph2DLayout<AbstractGraphNode, AbstractGraphEdge>, HashMap<AbstractGraphNode, Integer>) - Constructor for class mgui.interfaces.shapes.graphs.Graph2DInt
- Graph2DInt.DrawingTransformer - Class in mgui.interfaces.shapes.graphs
- Graph2DInt.RenderServer - Class in mgui.interfaces.shapes.graphs
- Graph2DLayout<V extends AbstractGraphNode,E extends AbstractGraphEdge> - Class in mgui.interfaces.shapes.graphs.util
-
Layout for use with
Graph2DInt. - Graph2DLayout(Graph<V, E>) - Constructor for class mgui.interfaces.shapes.graphs.util.Graph2DLayout
-
Creates an instance for the specified graph, with a default horizontal projection plane.
- Graph2DLayout(Graph<V, E>, Plane3D) - Constructor for class mgui.interfaces.shapes.graphs.util.Graph2DLayout
- Graph3D - Class in mgui.geometry
-
Represents a graph as a 3D geometric shape.
- Graph3D() - Constructor for class mgui.geometry.Graph3D
- Graph3D(InterfaceAbstractGraph) - Constructor for class mgui.geometry.Graph3D
- Graph3D(InterfaceAbstractGraph, HashMap<AbstractGraphNode, Point3f>) - Constructor for class mgui.geometry.Graph3D
- Graph3DInt - Class in mgui.interfaces.shapes.graphs
-
Represents a graph as a 3D shape.
- Graph3DInt - mgui.io.domestic.graphs.GraphInputOptions.GraphLoadType
- Graph3DInt() - Constructor for class mgui.interfaces.shapes.graphs.Graph3DInt
- Graph3DInt(Graph3D) - Constructor for class mgui.interfaces.shapes.graphs.Graph3DInt
- Graph3DInt(Graph3D, String) - Constructor for class mgui.interfaces.shapes.graphs.Graph3DInt
- Graph3DInt(InterfaceAbstractGraph) - Constructor for class mgui.interfaces.shapes.graphs.Graph3DInt
- Graph3DOutputOptions - Class in mgui.io.domestic.shapes
-
Output options for a Graph3DWriter
- Graph3DOutputOptions() - Constructor for class mgui.io.domestic.shapes.Graph3DOutputOptions
- Graph3DWriter - Class in mgui.io.domestic.shapes
-
Writer for a Graph3DInt object; default is to write using the domestic XML representation.
- Graph3DWriter() - Constructor for class mgui.io.domestic.shapes.Graph3DWriter
- GraphableObject - Interface in mgui.interfaces.graphs
- GraphDisplay - mgui.interfaces.graphics.InterfaceGraphic.GraphicType
- GraphEdgeLabelRenderer() - Constructor for class mgui.interfaces.graphs.util.GraphFunctions.GraphEdgeLabelRenderer
- GraphException - Exception in mgui.interfaces.graphs
-
Exception for Graph objects.
- GraphException(String) - Constructor for exception mgui.interfaces.graphs.GraphException
- GraphFileLoader - Class in mgui.io.domestic.graphs
-
Abstract loader class for loading graphs.
- GraphFileLoader() - Constructor for class mgui.io.domestic.graphs.GraphFileLoader
- GraphFileWriter - Class in mgui.io.domestic.graphs
-
Abstract class for all graph writers.
- GraphFileWriter(File) - Constructor for class mgui.io.domestic.graphs.GraphFileWriter
-
Constructor setting the output file.
- GraphFunctions - Class in mgui.interfaces.graphs.util
-
Provides utility functions for Graphs.
- GraphFunctions() - Constructor for class mgui.interfaces.graphs.util.GraphFunctions
- GraphFunctions.ArrowVisibility - Class in mgui.interfaces.graphs.util
- GraphFunctions.EdgeFactory - Class in mgui.interfaces.graphs.util
-
Factory to create graph edges.
- GraphFunctions.EdgeVisibility - Class in mgui.interfaces.graphs.util
- GraphFunctions.GraphEdgeLabelRenderer - Class in mgui.interfaces.graphs.util
-
Allows labels to be turned off.
- GraphFunctions.GraphNodeLabelRenderer - Class in mgui.interfaces.graphs.util
-
Allows labels to be turned off.
- GraphFunctions.NodeFactory - Class in mgui.interfaces.graphs.util
-
Factory to create graph nodes.
- GraphFunctions.NodeVisibility - Class in mgui.interfaces.graphs.util
- graphic_listeners - Variable in class mgui.interfaces.graphics.InterfaceGraphic
- graphic_map - Variable in class mgui.interfaces.plots.mgui.PlotMap2D
- Graphic2D - mgui.interfaces.graphics.InterfaceGraphic.GraphicType
- Graphic2DGrid - Class in mgui.interfaces.graphics
-
Defines a 2D grid, for display in an
InterfaceGraphic2Dwindow. - Graphic2DGrid() - Constructor for class mgui.interfaces.graphics.Graphic2DGrid
- Graphic2DMouseListener - Interface in mgui.interfaces.graphics
- graphic3D - Variable in class mgui.interfaces.graphics.InterfaceCanvas3D
- Graphic3D - mgui.interfaces.graphics.InterfaceGraphic.GraphicType
- GraphicButton() - Constructor for class mgui.interfaces.graphics.InterfaceGraphicWindow.GraphicButton
- GraphicEvent - Class in mgui.interfaces.graphics
-
Event on an
InterfaceGraphicobjects. - GraphicEvent(InterfaceGraphic<?>) - Constructor for class mgui.interfaces.graphics.GraphicEvent
- GraphicEvent(InterfaceGraphic<?>, GraphicEvent.EventType) - Constructor for class mgui.interfaces.graphics.GraphicEvent
- GraphicEvent.EventType - Enum in mgui.interfaces.graphics
- GraphicListener - Interface in mgui.interfaces.graphics
-
Deprecated.
- graphicListeners - Variable in class mgui.interfaces.graphics.InterfaceGraphic2D
- GraphicMouseListener - Interface in mgui.interfaces.graphics
-
Mouse listener on an
InterfaceGraphicobject. - GraphicPropertyListener - Interface in mgui.interfaces.graphics
- GraphicsFunctions - Class in mgui.interfaces.graphics
- GraphicsFunctions() - Constructor for class mgui.interfaces.graphics.GraphicsFunctions
- graphicSourceChanged(GraphicEvent) - Method in interface mgui.interfaces.graphics.InterfaceGraphicListener
- graphicSourceChanged(GraphicEvent) - Method in class mgui.interfaces.shapes.InterfaceSectionSetPanel
- graphicSourceChanged(GraphicEvent) - Method in class mgui.interfaces.shapes.SectionSet2DInt
- graphicSourceChanged(GraphicEvent) - Method in class mgui.interfaces.shapes.ShapeModel3D
- graphicSourceChanged(GraphicEvent) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
- graphicSourceChanged(GraphicEvent) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
- graphicUpdated(GraphicEvent) - Method in interface mgui.interfaces.graphics.InterfaceGraphicListener
- graphicUpdated(GraphicEvent) - Method in class mgui.interfaces.shapes.InterfaceSectionSetPanel
- graphicUpdated(GraphicEvent) - Method in class mgui.interfaces.shapes.SectionSet2DInt
- graphicUpdated(GraphicEvent) - Method in class mgui.interfaces.shapes.ShapeModel3D
- graphicUpdated(GraphicEvent) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
- graphicUpdated(GraphicEvent) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
-
Respond to a window event; this is relevant for section nodes
- GraphicWindowListEditor() - Constructor for class mgui.interfaces.graphics.InterfaceGraphicPanel.GraphicWindowListEditor
- GraphicWindowListRenderer() - Constructor for class mgui.interfaces.graphics.InterfaceGraphicPanel.GraphicWindowListRenderer
- GraphImage - Class in mgui.interfaces.graphs.shapes
-
Draws an image on a graph display.
- GraphImage() - Constructor for class mgui.interfaces.graphs.shapes.GraphImage
- GraphImage(BufferedImage, Point2f, Point2f) - Constructor for class mgui.interfaces.graphs.shapes.GraphImage
- GraphInputOptions - Class in mgui.io.domestic.graphs
-
General options for loading a graph
- GraphInputOptions() - Constructor for class mgui.io.domestic.graphs.GraphInputOptions
- GraphInputOptions.GraphLoadType - Enum in mgui.io.domestic.graphs
- graphListeners - Variable in class mgui.interfaces.graphs.InterfaceAbstractGraph
- GraphNodeLabelRenderer() - Constructor for class mgui.interfaces.graphs.util.GraphFunctions.GraphNodeLabelRenderer
- GraphNodeLabelRenderer(Renderer.VertexLabel.Position) - Constructor for class mgui.interfaces.graphs.util.GraphFunctions.GraphNodeLabelRenderer
- GraphOutputOptions - Class in mgui.io.domestic.graphs
-
General options for writing a graph to file.
- GraphOutputOptions() - Constructor for class mgui.io.domestic.graphs.GraphOutputOptions
- graphs - Variable in class mgui.interfaces.InterfaceWorkspace
- graphs - Variable in class mgui.io.domestic.graphs.GraphOutputOptions
- graphs - Variable in class mgui.io.domestic.shapes.Graph3DOutputOptions
- GraphShape - Class in mgui.interfaces.graphs.shapes
-
Abstract class for objects which implement
VisualizationServer.Paintable; these can be used to render shapes on a graph display window. - GraphShape() - Constructor for class mgui.interfaces.graphs.shapes.GraphShape
- GraphTreeCellRenderer - Class in mgui.interfaces.graphs.tree
- GraphTreeCellRenderer() - Constructor for class mgui.interfaces.graphs.tree.GraphTreeCellRenderer
- graphUpdated(NetworkGraphEvent) - Method in interface mgui.graphs.networks.NetworkGraphListener
- graphUpdated(NetworkGraphEvent) - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
- graphUpdated(InterfaceGraphEvent) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
- graphUpdated(InterfaceGraphEvent) - Method in interface mgui.interfaces.graphs.InterfaceGraphListener
- GraphXMLFunctions - Class in mgui.io.domestic.graphs.xml
-
Utility class for XML operations involving graphs.
- GraphXMLFunctions() - Constructor for class mgui.io.domestic.graphs.xml.GraphXMLFunctions
- GREY_SCALE - Static variable in class mgui.interfaces.maps.ContinuousColourMap
- GreyFileLoader - Class in mgui.io.standard.imaging
- GreyFileLoader(File) - Constructor for class mgui.io.standard.imaging.GreyFileLoader
- Greyscale - mgui.interfaces.plots.mgui.MatrixImagePlot.ColourType
- grid - Variable in class mgui.interfaces.shapes.volume.VolumeMaskUpdater
- Grid3D - Class in mgui.geometry
-
Holds a 3D array of values and a Box3D defining the distribution of these values in R3.
- Grid3D() - Constructor for class mgui.geometry.Grid3D
- Grid3D(int, int, int, int, Box3D) - Constructor for class mgui.geometry.Grid3D
- Grid3D(int, int, int, Box3D) - Constructor for class mgui.geometry.Grid3D
- Grid3D(Grid3D) - Constructor for class mgui.geometry.Grid3D
- grids - Variable in class mgui.interfaces.graphics.InterfaceGraphic2D
- GridSampleModel - Class in mgui.interfaces.shapes.util
-
This class represents image data which is stored in a band interleaved fashion and for which each sample of a pixel occupies one data element of the DataBuffer.
- GridSampleModel(int, int, int, int) - Constructor for class mgui.interfaces.shapes.util.GridSampleModel
-
Constructs a BandedSampleModel with the specified parameters.
- GridSampleModel(int, int, int, int, int[], int[]) - Constructor for class mgui.interfaces.shapes.util.GridSampleModel
-
Constructs a BandedSampleModel with the specified parameters.
- gridType - Variable in class mgui.io.foreign.vol.VolumeInputOptions
- GridVertexDataColumn - Class in mgui.interfaces.shapes.volume
-
Vertex data column defined for a
Volume3DInt. - GridVertexDataColumn(String, Volume3DInt) - Constructor for class mgui.interfaces.shapes.volume.GridVertexDataColumn
- GridVertexDataColumn(String, Volume3DInt, ArrayList<MguiNumber>) - Constructor for class mgui.interfaces.shapes.volume.GridVertexDataColumn
- group_node - Variable in class mgui.interfaces.shapes.Shape3DInt
- group_node - Variable in class mgui.interfaces.shapes.Volume3DInt
- guessDataType(String) - Static method in class mgui.datasources.DataTypes
-
Returns a best guess for the data type of the given string.
- gunzipAndTarFiles(File, File) - Static method in class mgui.io.util.IoFunctions
-
Decompresses the contents of the tar.gz archive in the file
archivetotarget_dir. - Gzip - mgui.io.util.IoFunctions.FileType
- GZIP_EXT - Static variable in class mgui.io.standard.nifti.Nifti1Dataset
- gzip_xml - Variable in class mgui.io.domestic.shapes.ShapeModel3DOutputOptions
- gzipAndTarFiles(List<File>, File) - Static method in class mgui.io.util.IoFunctions
-
Compresses
fileusing tar/gzip compression. - gzipAndTarFiles(List<File>, File, String) - Static method in class mgui.io.util.IoFunctions
-
Compresses
fileusing tar/gzip compression. - GzipBase64Binary - mgui.io.standard.gifti.GiftiOutputOptions.GiftiEncoding
- gzipFile(File, File) - Static method in class mgui.io.util.IoFunctions
-
Compresses
fileusing gzip compression.
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