Package mgui.neuro.components

Class AbstractDendrite

java.lang.Object

mgui.interfaces.AbstractInterfaceObject

mgui.models.networks.components.AbstractNetworkComponent

mgui.neuro.components.AbstractNeuroComponent

mgui.neuro.components.AbstractNeuronalComponent

mgui.neuro.components.AbstractDendrite

All Implemented Interfaces:

java.lang.Cloneable, java.lang.Comparable<DynamicModelComponent>, AttributeListener, AttributeObject, InterfaceObject, NamedObject, TreeObject, CleanableObject, DynamicModelComponent, TimeStepListener, Updateable, Dendrite, NeuronalComponent

Direct Known Subclasses:

SimpleDendrite

public abstract class AbstractDendrite
extends AbstractNeuronalComponent
implements Dendrite

Field Summary

Fields

Modifier and Type	Field	Description
AbstractDendrite	next
AbstractSoma	soma
java.util.ArrayList<Synapse>	synapses

Fields inherited from class mgui.neuro.components.AbstractNeuronalComponent

parent

Fields inherited from class mgui.neuro.components.AbstractNeuroComponent

attributes, clock, connections, events, hasSubComponents, id, listeners, solver, updated

Fields inherited from class mgui.interfaces.AbstractInterfaceObject

isDestroyed, tree_nodes

Constructor Summary

Constructors

Constructor	Description
AbstractDendrite()

Method Summary

Modifier and Type	Method	Description
void	addSynapse(Synapse s)	Add a synapse and create connection between this dendrite and synapse
void	connectTo(Dendrite d)	Connects this dendrite to another dendrite.
void	connectTo(Soma s)	Connects this dendrite to a soma.
void	disconnect()
java.util.ArrayList<DynamicModelComponent>	getSubComponents()	Returns a list of the complete subcomponent tree.
int	getSynapseCount()
java.util.ArrayList<Synapse>	getSynapses()
protected void	init()
boolean	isConnectedToDendrite()
boolean	isConnectedToSoma()
void	removeSynapse(Synapse s)	Remove a synapse along with its connection to this dendrite
void	setParent(Neuron n)
void	setTreeNode(InterfaceTreeNode treeNode)	Sets the children for this node's InterfaceTreeNode.
java.lang.String	toString()

Methods inherited from class mgui.neuro.components.AbstractNeuronalComponent

clone, getParent

Methods inherited from class mgui.neuro.components.AbstractNeuroComponent

addConnection, addEvent, addListener, addToEngine, attributeUpdated, compareTo, executeEvent, executeEvents, fireListeners, fireListeners, getAttribute, getAttributes, getConnections, getDelay, getID, getName, getODESolver, getRate, getSolver, hasSubComponents, removeConnection, removeListener, reset, resetClock, setAttribute, setAttributes, setDelay, setID, setID, setName, setODESolver, setSolver, setSolver, timeElapsed, updateComponent, updateFromClock

Methods inherited from class mgui.models.networks.components.AbstractNetworkComponent

getAttributeValue

Methods inherited from class mgui.interfaces.AbstractInterfaceObject

clean, destroy, getTreeLabel, isDestroyed, issueTreeNode, updateTreeNodes

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface mgui.interfaces.util.CleanableObject

clean

Methods inherited from interface java.lang.Comparable

compareTo

Methods inherited from interface mgui.models.dynamic.DynamicModelComponent

addConnection, addEvent, addToEngine, clone, executeEvents, getID, hasSubComponents, removeConnection, reset, setID, setID

Methods inherited from interface mgui.interfaces.InterfaceObject

destroy, isDestroyed

Methods inherited from interface mgui.interfaces.NamedObject

getName, setName

Methods inherited from interface mgui.neuro.components.NeuronalComponent

getParent

Methods inherited from interface mgui.models.dynamic.TimeStepListener

timeElapsed

Methods inherited from interface mgui.interfaces.trees.TreeObject

getTreeLabel, issueTreeNode

Field Details

synapses

public java.util.ArrayList<Synapse> synapses

next

public AbstractDendrite next

soma

public AbstractSoma soma

Constructor Details

AbstractDendrite

public AbstractDendrite()

Method Details

init

protected void init()

Overrides:

init in class AbstractNeuroComponent

addSynapse

public void addSynapse(Synapse s)
                throws NeuroException

Add a synapse and create connection between this dendrite and synapse

Specified by:

addSynapse in interface Dendrite

Parameters:

s - synapse to add

Throws:

NeuroException

removeSynapse

public void removeSynapse(Synapse s)

Remove a synapse along with its connection to this dendrite

Specified by:

removeSynapse in interface Dendrite

Parameters:

s - synapse to remove

connectTo

public void connectTo(Dendrite d)
               throws NeuroException

Connects this dendrite to another dendrite. All existing connections are removed.

Specified by:

connectTo in interface Dendrite

Parameters:

d - dendrite to connect to

Throws:

NeuroException

connectTo

public void connectTo(Soma s)
               throws NeuroException

Connects this dendrite to a soma. All existing connections are removed.

Specified by:

connectTo in interface Dendrite

Parameters:

s - soma to connect to

Throws:

NeuroException

disconnect

public void disconnect()

Specified by:

disconnect in interface Dendrite

isConnectedToDendrite

public boolean isConnectedToDendrite()

Specified by:

isConnectedToDendrite in interface Dendrite

isConnectedToSoma

public boolean isConnectedToSoma()

Specified by:

isConnectedToSoma in interface Dendrite

getSynapseCount

public int getSynapseCount()

Specified by:

getSynapseCount in interface Dendrite

getSynapses

public java.util.ArrayList<Synapse> getSynapses()

Specified by:

getSynapses in interface Dendrite

setParent

public void setParent(Neuron n)
               throws NeuroException

Specified by:

setParent in interface NeuronalComponent

Overrides:

setParent in class AbstractNeuronalComponent

Throws:

NeuroException

setTreeNode

public void setTreeNode(InterfaceTreeNode treeNode)

Description copied from interface: TreeObject

Sets the children for this node's InterfaceTreeNode.

Specified by:

setTreeNode in interface TreeObject

Overrides:

setTreeNode in class AbstractInterfaceObject

getSubComponents

public java.util.ArrayList<DynamicModelComponent> getSubComponents()

Description copied from class: AbstractNeuroComponent

Returns a list of the complete subcomponent tree. Subclasses containing subcomponents should override this and provide an enumeration of all subcomponents, also calling this method for each subcomponent to ensure a complete tree is returned.

Specified by:

getSubComponents in interface DynamicModelComponent

Overrides:

getSubComponents in class AbstractNeuroComponent

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object