Package mgui.interfaces.shapes.dynamic

Class Volume4DInt

java.lang.Object

mgui.interfaces.AbstractInterfaceObject

mgui.interfaces.shapes.InterfaceShape

mgui.interfaces.shapes.Shape3DInt

mgui.interfaces.shapes.Volume3DInt

mgui.interfaces.shapes.dynamic.Volume4DInt

All Implemented Interfaces:

java.awt.datatransfer.Transferable, java.lang.Comparable<InterfaceShape>, AttributeListener, AttributeObject, InterfaceObject, PersistentObject, ColourMapListener, VariableObject, PopupMenuObject, NamedObject, InterfaceQueryObject, Shape4DInt, InterfaceShapeQueryObject, ShapeListener, VertexDataColumnListener, InterfaceTransferable, TreeObject, CleanableObject, XMLObject, IconObject, org.jogamp.java3d.GeometryUpdater, org.jogamp.java3d.ImageComponent3D.Updater

public class Volume4DInt
extends Volume3DInt
implements Shape4DInt

Volume with 3 space and 1 time dimension.

Author:

Andrew Reid

Nested Class Summary

Nested classes/interfaces inherited from class mgui.interfaces.shapes.Shape3DInt

Shape3DInt.VertexShapeTransformer

Nested classes/interfaces inherited from class mgui.interfaces.shapes.InterfaceShape

InterfaceShape.VertexDataSet

Nested classes/interfaces inherited from interface mgui.interfaces.xml.XMLObject

XMLObject.XMLEncoding, XMLObject.XMLType

Field Summary

Fields

Modifier and Type	Field	Description
Grid3D	baseGrid
int	dynX
int	dynY
int	dynZ
DataType	sampleDataType

Fields inherited from class mgui.interfaces.shapes.Volume3DInt

apply_mask, box_node, colour_models, composite_alphas, composite_column_order, dataFile, group_node, intRect3D, loader, masks, render_node, renderer, show_in_composite, textureSet, updater, xml_composite_alphas, xml_composite_column_order, xml_is_reading_composite_order, xml_is_reading_header, xml_show_in_composite

Fields inherited from class mgui.interfaces.shapes.Shape3DInt

boundBox, boundBoxNode, bounds_group, bounds_shape, boundSphere, centerPt, children2D, creatable_scene_node, drawEngine2D, has_3d_node, hasCameraListener, idStr, nodeListener, parent2D, scene3DObject, sceneNode, selected_vertices_group, shape_group, shape3d, vertex_shape_transformer, vertices_group

Fields inherited from class mgui.interfaces.shapes.InterfaceShape

attributes, constraints, data_columns, icon, ID, is_auxiliary, is_registered, isDrawable, isImageShape, isLight, isOverridden, last_column_added, last_column_changed, last_column_removed, linked_colour_maps, loader_options, notifyListeners, overrideAttr, parent_set, selected_nodes, shapeListeners, vertex_data, writer_options, xml_current_column, xml_current_loader, xml_current_shape, xml_current_shape_options, xml_current_type, xml_current_url, xml_is_vertex_data, xml_root_dir

Fields inherited from class mgui.interfaces.AbstractInterfaceObject

isDestroyed, tree_nodes

Constructor Summary

Constructors

Constructor	Description
Volume4DInt()
Volume4DInt(Grid3D dyn_grid, Grid3D base_grid)
Volume4DInt(Grid3D dyn_grid, Grid3D base_grid, ColourMap cmap)

Method Summary

Modifier and Type	Method	Description
Grid3D	getBaseGrid()
int	getMaxValue()
int	getMinValue()
protected void	init()
void	setBaseGrid(Grid3D grid)
void	setSample(int i)	Sets the display grid with sample i from this volume's input stream, using the integration method specified in the IntegrateMethod attribute.
boolean	showBaseGrid()
void	showBaseGrid(boolean show)

Methods inherited from class mgui.interfaces.shapes.Volume3DInt

addMask, addMask, addVertexData, addVertexData, addVertexData, applyMask, attributeUpdated, clearMask, colourMapChanged, deregisterCameraListener, getApplyMasks, getBox, getCameraListener, getCenterOfVoxel, getClosestVertex, getColourModel, getColourModel, getCompositeAlpha, getCompositeOrderedColumns, getDataType, getDataType, getDatumAtPoint, getDatumAtPoint, getDatumAtVoxel, getDatumAtVoxel, getDatumAtVoxel, getDatumAtVoxel, getEffectiveMask, getGeometryInstance, getGrid, getInterpolatedValueAtPoint, getInterpolatedValueAtPoint, getInterpolatedValueAtPoint, getInterpolatedValueAtPoint, getMapMax, getMapMin, getMask, getMaskNames, getMasks, getRenderMode, getShape2D, getTexture, getVertexIndex, getVertexIndex, handleXMLElementEnd, handleXMLElementStart, hasAlpha, hasAlpha, hasAlpha, invertMask, isByRef, isComposite, isComposite, isComposite, isMaskApplied, isMaskedAtPoint, isMaskedAtVoxel, isMaskedAtVoxel, registerCameraListener, removeMask, removeVertexData, renameVertexDataColumn, sampleFromVolume, sampleFromVolume, sampleFromVolume, sampleFromVolume, setAllMasks, setApplyMasks, setBounds, setCompositeAlpha, setCompositeAlpha, setCompositeIndex, setCompositeIndex, setDatumAtVoxel, setDatumAtVoxel, setDatumAtVoxel, setDatumAtVoxel, setDatumAtVoxel, setDatumAtVoxel, setDatumAtVoxel, setDatumAtVoxel, setGrid, setGrid, setIcon, setMapMax, setMapMin, setMask, setMask, setMaskApplied, setParentSet, setRenderMode, setScene3DObject, setTexture, setTexture, setUpdater, shapeUpdated, showInComposite, showInComposite, showInComposite, toString, unionMask, unionMaskWithVolume, unionMaskWithVolume, update, updateData, updateDataColumns, updateSceneNode, updateShape, updateTexture, updateTextureColourMap, updateTextureValues, vertexDataColumnChanged, vertexDataColumnColourMapChanged, writeFullXML, writeXML

Methods inherited from class mgui.interfaces.shapes.Shape3DInt

addShape2DChild, clear2DChildren, contains, copyAttributes, crossesPlane, destroy, draw2D, drawShape2D, drawShape2D, drawShape2D, fireChildren2D, fireChildren2DModified, fireShapeListeners, fireShapeModified, geometryChanged, getAlpha, getBoundBox, getBoundBoxNode, getBoundSphere, getCenterOfGravity, getDimensions, getDTD, getFullName, getGeometricCenter, getGeometry, getIcon, getInheritingAttribute, getLabelColour, getLabelFont, getLabelScale, getLineColour, getLineStyle, getLocalName, getModifiedAttribute, getParent2D, getParentAttribute, getPopupMenu, getPopupMenuLength, getProximity, getScene3DObject, getScene3DObject, getShape, getShape2D, getShape2DInt, getShape2DInt, getShapeSceneNode, getShapeSceneNode, getShortXML, getTransferData, getTransferDataFlavors, getTreeLabel, getVertex, getVertexAppearance, getVertexColour, getVertexColour, getVertexCount, getVertexScale, getVertexScale, getVertexSelection, getVertices, handlePopupEvent, hasCameraListener, hasParentShape, isDataFlavorSupported, isHeritableAttribute, isInheritingAttribute, isLive, issueTreeNode, needsRedraw, performTransfer, releaseScene3DChildren, removeShape2DChild, setAlpha, setBoundBoxNode, setCreatableSceneNode, setCurrentColumn, setGeometry, setGraphic3DPopupMenu, setLabelColour, setLabelFont, setLabelScale, setLineStyle, setLive, setParent2D, setScene3DObject, setSelectedVertices, setShape, setShapeSceneNode, setShowSelectedVertices, setVertexSelection, showPopupMenu, showVertices, showVertices, updateChildren2D, updateData, updateSelectedVertices, updateVertices

Methods inherited from class mgui.interfaces.shapes.InterfaceShape

_init, addDataLink, addShapeListener, addVertexData, addVertexData, addVertexData, addVertexData, addVertexData, addVertexData, cleanTreeNodes, compareTo, finalizeAfterXML, fromVariable, getAllVertexData, getAttribute, getAttributes, getAttributeValue, getByReferenceUrls, getColourMap, getColourMap, getConstraint, getConstraints, getCurrentColumn, getCurrentDataColumn, getCurrentVertexData, getDataLink, getDataMax, getDataMin, getDatumAtVertex, getDatumAtVertex, getDefaultColourMap, getFileLoader, getFileWriter, getID, getInheritedAttribute, getInheritedAttributes, getInheritedAttributeValue, getLastColumnAdded, getLastColumnChanged, getLastColumnRemoved, getLegalName, getLinkedVertexData, getLinkedVertexDatum, getLoaderOptions, getModel, getName, getNameMap, getNameMap, getNonLinkedDataColumns, getObjectIcon, getParentSet, getPopupMenu, getSourceURL, getUnit, getUrlReference, getVariables, getVariableType, getVariableValue, getVariableValues, getVertexData, getVertexData, getVertexDataColumn, getVertexDataColumnCount, getVertexDataColumnNames, getVertexDataColumns, getVertexDataMap, getWriterOptions, getXML, getXML, getXML, getXMLSchema, handleXMLString, hasAttribute, hasColumn, hasData, inheritAttributesFromParent, isAuxiliaryShape, isAuxiliaryShape, isDestroyed, isDrawable, isImageShape, isLegalName, isLight, isSelectable, isVisible, newVertexData, queryObject, queryShapeAtVertex, register, removeColourMap, removeDataLink, removeNameMap, removeShapeListener, setAttribute, setAttributes, setColourMap, setColourMap, setConstraint, setCurrentColumn, setDataMax, setDataMax, setDataMax, setDataMin, setDataMin, setDataMin, setDatumAtVertex, setDatumAtVertex, setDatumAtVertex, setDatumAtVertex, setDefaultColourMap, setDefaultColourMap, setFileLoader, setFileLoader, setFileWriter, setID, setLoaderOptions, setName, setNameMap, setOverride, setSelectable, setTreeNode, setUnit, setUrlReference, setVariableValues, setVariableValues, setVertexData, setVertexData, setVertexData, setVertexDataMap, setVisible, setWriterOptions, setXMLRoot, show2D, show2D, show3D, show3D, showData, showData, supportsVariableType, toVariable, unsetOverride, writeXML, writeXML

Methods inherited from class mgui.interfaces.AbstractInterfaceObject

clean, updateTreeNodes

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface mgui.interfaces.util.CleanableObject

clean

Methods inherited from interface mgui.interfaces.shapes.util.ShapeListener

destroy, isDestroyed

Field Details

baseGrid

public Grid3D baseGrid

sampleDataType

public DataType sampleDataType

dynX

public int dynX

dynY

public int dynY

dynZ

public int dynZ

Constructor Details

Volume4DInt

public Volume4DInt()

Volume4DInt

public Volume4DInt(Grid3D dyn_grid,
Grid3D base_grid)

Volume4DInt

public Volume4DInt(Grid3D dyn_grid,
Grid3D base_grid,
ColourMap cmap)

Method Details

init

protected void init()

Overrides:

init in class Volume3DInt

setBaseGrid

public void setBaseGrid(Grid3D grid)

getBaseGrid

public Grid3D getBaseGrid()

showBaseGrid

public boolean showBaseGrid()

showBaseGrid

public void showBaseGrid(boolean show)

getMinValue

public int getMinValue()

getMaxValue

public int getMaxValue()

setSample

public void setSample(int i)
               throws java.io.IOException

Sets the display grid with sample i from this volume's input stream, using the integration method specified in the IntegrateMethod attribute. Sets a new updater which must be called using the update() method in order for the changes to be applied.

Parameters:

i - sample with which to set grid

Throws:

java.io.IOException - if inputStream is null or inputStream.sample(i) throws an exception