Package mgui.neuro.components

Class AbstractDendrites

java.lang.Object

mgui.interfaces.AbstractInterfaceObject

mgui.models.networks.components.AbstractNetworkComponent

mgui.neuro.components.AbstractNeuroComponent

mgui.neuro.components.AbstractNeuronalComponent

mgui.neuro.components.AbstractDendrites

All Implemented Interfaces:

java.lang.Cloneable, java.lang.Comparable<DynamicModelComponent>, AttributeListener, AttributeObject, InterfaceObject, NamedObject, TreeObject, CleanableObject, DynamicModelComponent, TimeStepListener, Updateable, Dendrites, NeuronalComponent

Direct Known Subclasses:

SimpleDendrites

public abstract class AbstractDendrites
extends AbstractNeuronalComponent
implements Dendrites

Default class for dendrites. Contains a list of dendrite objects which can be connected to other dendrites. A dendrite can only be connected to one other dendrite, thus running connectDendrites will disconnect any existing connections d1 has. A dendrite can receive any number of connections; thus the set of connected dendrites is either disjoint or a tree. All dendrites without forward connections should be connected to a soma by the instance of Neuron that contains them. NOTE: the tree constraint can be broken by overriding methods, if this is for some reason desirable.

Version:

1.0

Author:

Andrew Reid

Field Summary

Fields

Modifier and Type	Field	Description
java.util.ArrayList<AbstractDendrite>	components

Fields inherited from class mgui.neuro.components.AbstractNeuronalComponent

parent

Fields inherited from class mgui.neuro.components.AbstractNeuroComponent

attributes, clock, connections, events, hasSubComponents, id, listeners, solver, updated

Fields inherited from class mgui.interfaces.AbstractInterfaceObject

isDestroyed, tree_nodes

Constructor Summary

Constructors

Constructor	Description
AbstractDendrites()

Method Summary

Modifier and Type	Method	Description
void	addDendrite(Dendrite d)
void	addDendrite(Dendrite d, Dendrite d2)
java.util.ArrayList<DynamicModelComponent>	getSubComponents()	Returns a list of the complete subcomponent tree.
java.util.ArrayList<Synapse>	getSynapses()
protected void	init()
void	removeDendrite(Dendrite d)
void	setParent(AbstractNeuron n)
void	setTreeNode(InterfaceTreeNode treeNode)	Sets the children for this node's InterfaceTreeNode.
java.lang.String	toString()

Methods inherited from class mgui.neuro.components.AbstractNeuronalComponent

clone, getParent, setParent

Methods inherited from class mgui.neuro.components.AbstractNeuroComponent

addConnection, addEvent, addListener, addToEngine, attributeUpdated, compareTo, executeEvent, executeEvents, fireListeners, fireListeners, getAttribute, getAttributes, getConnections, getDelay, getID, getName, getODESolver, getRate, getSolver, hasSubComponents, removeConnection, removeListener, reset, resetClock, setAttribute, setAttributes, setDelay, setID, setID, setName, setODESolver, setSolver, setSolver, timeElapsed, updateComponent, updateFromClock

Methods inherited from class mgui.models.networks.components.AbstractNetworkComponent

getAttributeValue

Methods inherited from class mgui.interfaces.AbstractInterfaceObject

clean, destroy, getTreeLabel, isDestroyed, issueTreeNode, updateTreeNodes

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface mgui.interfaces.util.CleanableObject

clean

Methods inherited from interface java.lang.Comparable

compareTo

Methods inherited from interface mgui.models.dynamic.DynamicModelComponent

addConnection, addEvent, addToEngine, clone, executeEvents, getID, hasSubComponents, removeConnection, reset, setID, setID

Methods inherited from interface mgui.interfaces.InterfaceObject

destroy, isDestroyed

Methods inherited from interface mgui.interfaces.NamedObject

getName, setName

Methods inherited from interface mgui.neuro.components.NeuronalComponent

getParent, setParent

Methods inherited from interface mgui.models.dynamic.TimeStepListener

timeElapsed

Methods inherited from interface mgui.interfaces.trees.TreeObject

getTreeLabel, issueTreeNode

Field Details

components

public java.util.ArrayList<AbstractDendrite> components

Constructor Details

AbstractDendrites

public AbstractDendrites()

Method Details

init

protected void init()

Overrides:

init in class AbstractNeuroComponent

addDendrite

public void addDendrite(Dendrite d)
                 throws NeuroException

Specified by:

addDendrite in interface Dendrites

Throws:

NeuroException

addDendrite

public void addDendrite(Dendrite d,
Dendrite d2)
                 throws NeuroException

Specified by:

addDendrite in interface Dendrites

Throws:

NeuroException

removeDendrite

public void removeDendrite(Dendrite d)
                    throws NeuroException

Specified by:

removeDendrite in interface Dendrites

Throws:

NeuroException

setParent

public void setParent(AbstractNeuron n)

setTreeNode

public void setTreeNode(InterfaceTreeNode treeNode)

Description copied from interface: TreeObject

Sets the children for this node's InterfaceTreeNode.

Specified by:

setTreeNode in interface TreeObject

Overrides:

setTreeNode in class AbstractInterfaceObject

getSubComponents

public java.util.ArrayList<DynamicModelComponent> getSubComponents()

Description copied from class: AbstractNeuroComponent

Returns a list of the complete subcomponent tree. Subclasses containing subcomponents should override this and provide an enumeration of all subcomponents, also calling this method for each subcomponent to ensure a complete tree is returned.

Specified by:

getSubComponents in interface DynamicModelComponent

Overrides:

getSubComponents in class AbstractNeuroComponent

getSynapses

public java.util.ArrayList<Synapse> getSynapses()

Specified by:

getSynapses in interface Dendrites

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object