Package mgui.neuro.components.simple

Class SimpleSoma

java.lang.Object

mgui.interfaces.AbstractInterfaceObject

mgui.models.networks.components.AbstractNetworkComponent

mgui.neuro.components.AbstractNeuroComponent

mgui.neuro.components.AbstractNeuronalComponent

mgui.neuro.components.AbstractSoma

mgui.neuro.components.simple.SimpleSoma

All Implemented Interfaces:

java.lang.Cloneable, java.lang.Comparable<DynamicModelComponent>, AttributeListener, AttributeObject, InterfaceObject, NamedObject, TreeObject, CleanableObject, DynamicModelComponent, TimeStepListener, Updateable, NeuronalComponent, Soma

public class SimpleSoma
extends AbstractSoma

Simple soma for, e.g., SimpleNeuron. Fires an "action potential" of magnitude specified by the output parameter, if potential > threshold.

Since:

1.0

Version:

1.0

Author:

Andrew Reid

Field Summary

Fields

Modifier and Type	Field	Description
double	potential
Function	transferFunction

Fields inherited from class mgui.neuro.components.AbstractNeuronalComponent

parent

Fields inherited from class mgui.neuro.components.AbstractNeuroComponent

attributes, clock, connections, events, hasSubComponents, id, listeners, solver, updated

Fields inherited from class mgui.interfaces.AbstractInterfaceObject

isDestroyed, tree_nodes

Constructor Summary

Constructors

Constructor	Description
SimpleSoma(double threshold, double output, double restingV)

Method Summary

Modifier and Type	Method	Description
java.lang.Object	clone()
protected boolean	executeEvent(DynamicModelEvent e)
double	getOutput()
double	getRestingV()
double	getThreshold()
protected void	init()
void	setOutput(double o)
void	setRestingV(double r)
void	setThreshold(double t)
protected boolean	updateComponent()

Methods inherited from class mgui.neuro.components.AbstractSoma

toString

Methods inherited from class mgui.neuro.components.AbstractNeuronalComponent

getParent, setParent

Methods inherited from class mgui.neuro.components.AbstractNeuroComponent

addConnection, addEvent, addListener, addToEngine, attributeUpdated, compareTo, executeEvents, fireListeners, fireListeners, getAttribute, getAttributes, getConnections, getDelay, getID, getName, getODESolver, getRate, getSolver, getSubComponents, hasSubComponents, removeConnection, removeListener, reset, resetClock, setAttribute, setAttributes, setDelay, setID, setID, setName, setODESolver, setSolver, setSolver, timeElapsed, updateFromClock

Methods inherited from class mgui.models.networks.components.AbstractNetworkComponent

getAttributeValue

Methods inherited from class mgui.interfaces.AbstractInterfaceObject

clean, destroy, getTreeLabel, isDestroyed, issueTreeNode, setTreeNode, updateTreeNodes

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface mgui.interfaces.util.CleanableObject

clean

Methods inherited from interface java.lang.Comparable

compareTo

Methods inherited from interface mgui.models.dynamic.DynamicModelComponent

addConnection, addEvent, addToEngine, executeEvents, getID, getSubComponents, hasSubComponents, removeConnection, reset, setID, setID

Methods inherited from interface mgui.interfaces.InterfaceObject

destroy, isDestroyed

Methods inherited from interface mgui.interfaces.NamedObject

getName, setName

Methods inherited from interface mgui.neuro.components.NeuronalComponent

getParent, setParent

Methods inherited from interface mgui.models.dynamic.TimeStepListener

timeElapsed

Methods inherited from interface mgui.interfaces.trees.TreeObject

getTreeLabel, issueTreeNode, setTreeNode

Field Details

transferFunction

public Function transferFunction

potential

public double potential

Constructor Details

SimpleSoma

public SimpleSoma(double threshold,
double output,
double restingV)

Method Details

init

protected void init()

Overrides:

init in class AbstractNeuroComponent

setThreshold

public void setThreshold(double t)

getThreshold

public double getThreshold()

setOutput

public void setOutput(double o)

getOutput

public double getOutput()

setRestingV

public void setRestingV(double r)

getRestingV

public double getRestingV()

executeEvent

protected boolean executeEvent(DynamicModelEvent e)
                        throws NeuroException

Overrides:

executeEvent in class AbstractNeuroComponent

Throws:

NeuroException

updateComponent

protected boolean updateComponent()

Overrides:

updateComponent in class AbstractNeuroComponent

clone

public java.lang.Object clone()

Specified by:

clone in interface DynamicModelComponent

Specified by:

clone in class AbstractNeuronalComponent