Package mgui.io.foreign.interfile

Class InterfileLoader

java.lang.Object

mgui.io.FileLoader

mgui.io.domestic.shapes.InterfaceShapeLoader

mgui.io.domestic.shapes.VolumeFileLoader

mgui.io.foreign.interfile.InterfileLoader

All Implemented Interfaces:

InterfaceIO, IconObject

public class InterfileLoader
extends VolumeFileLoader

Loads volume data stored in Interfile format. Header information is stored in an ASCII file with extension 'hdr' or 'ihr'. Voxel data is stored in a binary file with the extension 'img'. The data type for the img file is specified in the header file.

Version:

1.0

Author:

Andrew Reid

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
class	InterfileLoader.InterfileHeader

Field Summary

Fields inherited from class mgui.io.domestic.shapes.VolumeFileLoader

dataMax, dataMin, flipX, flipY, flipZ, maxAlpha, minAlpha, setAlpha

Fields inherited from class mgui.io.FileLoader

dataFile, dataURL, options

Constructor Summary

Constructors

Constructor	Description
InterfileLoader()

Method Summary

Modifier and Type	Method	Description
VolumeMetadata	getVolumeMetadata()	Returns a set of metadata describing the current volume file.
boolean	setGrid3D(Grid3D grid)
void	setHeader()
protected boolean	setVolume3DBlocking(Volume3DInt volume, java.lang.String column, int v, VolumeInputOptions options, ProgressUpdater progress)

Methods inherited from class mgui.io.domestic.shapes.VolumeFileLoader

getDefaultOptions, getObjectIcon, getSupportedObjects, getVolCount, getVolume3D, getVolume3D, getVolume3D, getVolume3D, getVolume3D, getVolume3DCustom, load, loadObject, loadShape, loadVolume, loadVolume, loadVolume, setAlpha, setAlpha, setVolume3D, setVolume3D, setVolume3D, setVolume3D, setVolume3DWorker

Methods inherited from class mgui.io.FileLoader

getComplementIOType, getFailureMessage, getFile, getIOType, getOptions, getProgressMessage, getSuccessMessage, getTitle, getWriterComplement, load, load, loadObject, loadObject, loadObject, setFile, setOptions, setURL, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

InterfileLoader

public InterfileLoader()

Method Details

setGrid3D

public boolean setGrid3D(Grid3D grid)

setHeader

public void setHeader()

getVolumeMetadata

public VolumeMetadata getVolumeMetadata()
                                 throws java.io.IOException,
java.io.FileNotFoundException

Description copied from class: VolumeFileLoader

Returns a set of metadata describing the current volume file.

Specified by:

getVolumeMetadata in class VolumeFileLoader

Returns:

Throws:

java.io.IOException

java.io.FileNotFoundException

setVolume3DBlocking

protected boolean setVolume3DBlocking(Volume3DInt volume,
java.lang.String column,
int v,
VolumeInputOptions options,
ProgressUpdater progress)
                               throws ShapeIOException

Specified by:

setVolume3DBlocking in class VolumeFileLoader

Throws:

ShapeIOException