Package mgui.io.foreign.vol

Class VolumeInputOptions

java.lang.Object

mgui.interfaces.InterfaceOptions

mgui.io.InterfaceIOOptions

mgui.io.domestic.shapes.ShapeInputOptions

mgui.io.foreign.vol.VolumeInputOptions

All Implemented Interfaces:

InterfaceObject, NamedObject, TreeObject, CleanableObject, XMLObject

Direct Known Subclasses:

Volume4DInputOptions

public class VolumeInputOptions
extends ShapeInputOptions

Nested Class Summary

Nested classes/interfaces inherited from interface mgui.interfaces.xml.XMLObject

XMLObject.XMLEncoding, XMLObject.XMLType

Field Summary

Fields

Modifier and Type	Field	Description
ColourMap	colourMap
double	dataMax
double	dataMin
int	dataType
DataType	dynDataType
int	dynFormat
java.lang.String	dynInputType
java.io.File	file
boolean	flipX
boolean	flipY
boolean	flipZ
int	format	options: calculate alpha from intensity max/min alpha cutoffs colour map
static int	FORMAT_ANALYZE
static int	FORMAT_MINC
static int	FORMAT_NIFTI
static int	FORMAT_VOL
java.lang.String	gridType
java.lang.String	inputType
boolean	isDynamic
float	maxAlpha
float	minAlpha
static int	SET_DYNAMIC
static int	SET_VOLUME
boolean	setAlpha
boolean	setAxes
boolean	setDims
boolean	setGeom
boolean	setMax
boolean	setOrig
boolean	setType
static java.lang.String	TYPE_ABGR
static java.lang.String	TYPE_ARGB
static java.lang.String	TYPE_BGR
static java.lang.String	TYPE_BGRA
static java.lang.String	TYPE_CMAP
static java.lang.String	TYPE_INTENSITY
static java.lang.String	TYPE_RGB
static java.lang.String	TYPE_RGBA
java.io.File[]	volumes
org.jogamp.vecmath.Vector3f	xAxis
int	xDim
float	xGeom
float	xOrig
org.jogamp.vecmath.Vector3f	yAxis
int	yDim
float	yGeom
float	yOrig
org.jogamp.vecmath.Vector3f	zAxis
int	zDim
float	zGeom
float	zOrig

Fields inherited from class mgui.io.domestic.shapes.ShapeInputOptions

files, names, shape, shape_set

Constructor Summary

Constructors

Constructor	Description
VolumeInputOptions()

Method Summary

Modifier and Type	Method	Description
boolean	hasColourMap()
void	setFrom(VolumeInputOptions options)

Methods inherited from class mgui.io.domestic.shapes.ShapeInputOptions

getFileChooser, getFileChooser, getFiles, setFiles, setObject, setShapeSet

Methods inherited from class mgui.io.InterfaceIOOptions

getDTD, getLocalName, getShortXML, getXML, getXML, getXMLSchema, handleXMLElementEnd, handleXMLElementStart, handleXMLString, setFromComplementaryOptions, writeXML, writeXML, writeXML

Methods inherited from class mgui.interfaces.InterfaceOptions

clean, destroy, getName, getTreeLabel, isDestroyed, issueTreeNode, setName, setTreeNode

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

SET_VOLUME

public static final int SET_VOLUME

See Also:

Constant Field Values

SET_DYNAMIC

public static final int SET_DYNAMIC

See Also:

Constant Field Values

format

public int format

options: calculate alpha from intensity max/min alpha cutoffs colour map

file

public java.io.File file

inputType

public java.lang.String inputType

gridType

public java.lang.String gridType

setAlpha

public boolean setAlpha

maxAlpha

public float maxAlpha

minAlpha

public float minAlpha

flipX

public boolean flipX

flipY

public boolean flipY

flipZ

public boolean flipZ

xDim

public int xDim

yDim

public int yDim

zDim

public int zDim

xGeom

public float xGeom

yGeom

public float yGeom

zGeom

public float zGeom

dataMin

public double dataMin

dataMax

public double dataMax

dataType

public int dataType

xOrig

public float xOrig

yOrig

public float yOrig

zOrig

public float zOrig

xAxis

public org.jogamp.vecmath.Vector3f xAxis

yAxis

public org.jogamp.vecmath.Vector3f yAxis

zAxis

public org.jogamp.vecmath.Vector3f zAxis

colourMap

public ColourMap colourMap

isDynamic

public boolean isDynamic

volumes

public java.io.File[] volumes

dynFormat

public int dynFormat

dynDataType

public DataType dynDataType

dynInputType

public java.lang.String dynInputType

setDims

public boolean setDims

setGeom

public boolean setGeom

setType

public boolean setType

setOrig

public boolean setOrig

setMax

public boolean setMax

setAxes

public boolean setAxes

TYPE_RGB

public static final java.lang.String TYPE_RGB

See Also:

Constant Field Values

TYPE_RGBA

public static final java.lang.String TYPE_RGBA

See Also:

Constant Field Values

TYPE_ARGB

public static final java.lang.String TYPE_ARGB

See Also:

Constant Field Values

TYPE_BGR

public static final java.lang.String TYPE_BGR

See Also:

Constant Field Values

TYPE_BGRA

public static final java.lang.String TYPE_BGRA

See Also:

Constant Field Values

TYPE_ABGR

public static final java.lang.String TYPE_ABGR

See Also:

Constant Field Values

TYPE_INTENSITY

public static final java.lang.String TYPE_INTENSITY

See Also:

Constant Field Values

TYPE_CMAP

public static final java.lang.String TYPE_CMAP

See Also:

Constant Field Values

FORMAT_VOL

public static final int FORMAT_VOL

See Also:

Constant Field Values

FORMAT_ANALYZE

public static final int FORMAT_ANALYZE

See Also:

Constant Field Values

FORMAT_NIFTI

public static final int FORMAT_NIFTI

See Also:

Constant Field Values

FORMAT_MINC

public static final int FORMAT_MINC

See Also:

Constant Field Values

Constructor Details

VolumeInputOptions

public VolumeInputOptions()

Method Details

hasColourMap

public boolean hasColourMap()

setFrom

public void setFrom(VolumeInputOptions options)