Index
All Classes|All Packages
P
- p1 - Variable in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
- P1 - Variable in class mgui.morph.sections.RadialRepresentation
- p2 - Variable in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
- p3 - Variable in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
- pad - Variable in class mgui.io.foreign.duff.DuffSurfaceHeader
- pad1 - Variable in class mgui.io.foreign.trackvis.TrackVisTractHeader
- pad2 - Variable in class mgui.io.foreign.trackvis.TrackVisTractHeader
- padding - Variable in class mgui.interfaces.maps.ContinuousColourBar
- page_count - Variable in class mgui.interfaces.layouts.LayoutDocument
- paint(Graphics) - Method in class au.edu.unsw.cse.Applet3d
- paint(Graphics) - Method in class au.edu.unsw.cse.Paint3d
- paint(Graphics) - Method in interface au.edu.unsw.cse.Painter
- paint(Graphics) - Method in class au.edu.unsw.cse.PaintVRML
- paint(Graphics) - Method in class au.edu.unsw.cse.Viewer
- paint(Graphics) - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
-
Paints the value.
- paint(Graphics) - Method in class mgui.interfaces.frames.SessionFrame
- paint(Graphics) - Method in class mgui.interfaces.graphs.shapes.GraphShape
- paint(Graphics) - Method in class mgui.interfaces.graphs.tree.GraphTreeCellRenderer
- paint(Graphics) - Method in class mgui.interfaces.shapes.trees.ShapeTreeCellRenderer
- paint(Graphics) - Method in class mgui.interfaces.trees.InterfaceTreeTable.TreeTableCellRenderer
- paint(Graphics, JComponent) - Method in class mgui.interfaces.util.VerticalLabelUI
- Paint3d - Class in au.edu.unsw.cse
- Paint3d(Viewer) - Constructor for class au.edu.unsw.cse.Paint3d
-
Create a canvas for rendering model in.
- paintBorder(Graphics) - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow.GraphicButton
- paintBorder(Graphics) - Method in class mgui.interfaces.gui.ColourButton
- paintBorder(Graphics) - Method in class mgui.interfaces.layouts.CategoryTitle
- paintComponent(Graphics) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
- paintComponent(Graphics) - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow.GraphicButton
- paintComponent(Graphics) - Method in class mgui.interfaces.gui.ColourButton
- paintComponent(Graphics) - Method in class mgui.interfaces.InterfaceDisplayPanel
- paintComponent(Graphics) - Method in class mgui.interfaces.io.temp.TempBitmapDrawer
- paintComponent(Graphics) - Method in class mgui.interfaces.layouts.CategoryTitle
- paintComponent(Graphics) - Method in class mgui.interfaces.maps.ContinuousColourBar
- paintComponent(Graphics) - Method in class mgui.interfaces.shapes.util.StrokeSample
-
Draws a line using the sample stroke.
- paintComponent(Graphics) - Method in class mgui.interfaces.stats.HistogramPlot
- Painter - Interface in au.edu.unsw.cse
- paintFocus(Graphics, int, int, int, int, Color) - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
- PaintVRML - Class in au.edu.unsw.cse
- PaintVRML(Applet3d) - Constructor for class au.edu.unsw.cse.PaintVRML
- PajekGraphInputDialog - Class in mgui.io.foreign.pajek
-
Options dialog box for PajekGraphLoader.
- PajekGraphInputDialog() - Constructor for class mgui.io.foreign.pajek.PajekGraphInputDialog
- PajekGraphInputDialog(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.foreign.pajek.PajekGraphInputDialog
- PajekGraphInputOptions - Class in mgui.io.foreign.pajek
-
Options for Pajek graph input.
- PajekGraphInputOptions() - Constructor for class mgui.io.foreign.pajek.PajekGraphInputOptions
- PajekGraphLoader - Class in mgui.io.foreign.pajek
-
Loads a graph from the Pajek graph format (see http://pajek.imfm.si/doku.php).
- PajekGraphLoader() - Constructor for class mgui.io.foreign.pajek.PajekGraphLoader
- pan(int, int) - Method in class au.edu.unsw.cse.View3d
- panDI(double, double) - Method in class au.edu.unsw.cse.View3dInfo
- PaneDestroyed - mgui.interfaces.SplitPanelEvent.EventType
- panel - Variable in class mgui.interfaces.graphics.InterfaceGraphicWindow
- panel - Variable in class mgui.interfaces.layouts.InterfaceLayoutFrame
- panel - Variable in class mgui.interfaces.neuro.CorticalThicknessDataTableOptions
- panel - Variable in class mgui.interfaces.neuro.CorticalThicknessOptions
- panel - Variable in class mgui.io.domestic.videos.VideoOutputDialog
- panel1 - Variable in class mgui.interfaces.InterfaceSplitPanel
- panel2 - Variable in class mgui.interfaces.InterfaceSplitPanel
- panels - Variable in class mgui.interfaces.InterfaceComboPanel
- panRate - Variable in class mgui.interfaces.tools.graphics.ToolMouseOrbit3D
- ParallelOutputStream - Class in mgui.io.util
-
Simple class which writes to multiple output streams
- ParallelOutputStream() - Constructor for class mgui.io.util.ParallelOutputStream
- ParallelOutputStream(ArrayList<OutputStream>) - Constructor for class mgui.io.util.ParallelOutputStream
- parameters - Variable in class mgui.command.CommandInstance
- parameters - Variable in class mgui.pipelines.PipelineProcess
- parameters - Variable in class mgui.pipelines.PipelineProcessInstance
- params - Variable in class mgui.interfaces.shapes.volume.VolumeMaskUpdater
- parent - Variable in class au.edu.unsw.cse.ColorControl
- parent - Variable in class au.edu.unsw.cse.Viewer
- parent - Variable in class mgui.interfaces.graphics.PostRenderingCanvas3D
- parent - Variable in class mgui.interfaces.shapes.Text2DIntMouseCoords
- parent - Variable in class mgui.neuro.components.AbstractNeuronalComponent
- parent - Variable in class mgui.neuro.components.compartments.NeuronalCompartmentalComponent
- parent_panel - Variable in class mgui.interfaces.graphics.InterfaceGraphicWindow
- parent_panel - Variable in class mgui.interfaces.InterfaceDisplayPanel
- parent_section_set - Variable in class mgui.interfaces.shapes.ShapeSet2DInt
- parent_set - Variable in class mgui.interfaces.shapes.InterfaceShape
- parent_table - Variable in class mgui.interfaces.datasources.DataFieldOptions
- parent_tree - Variable in class mgui.interfaces.trees.InterfaceTreeNode
- parent2D - Variable in class mgui.interfaces.shapes.Shape3DInt
- parentFrame - Variable in class mgui.interfaces.InterfaceDisplayPanel
- parentObj - Variable in class mgui.interfaces.layouts.CategoryTitle
- parentPanel - Variable in class mgui.interfaces.attributes.table.InterfaceAttributeTable
- parentPanel - Variable in class mgui.interfaces.InterfaceDialogBox
- parents - Variable in class mgui.interfaces.shapes.Shape2DSelectionSet
- parentSet - Variable in class mgui.morph.sections.MorphSections3DInt
- parentShape - Variable in class mgui.interfaces.shapes.Shape2DInt
- parse(InputStream) - Method in class mgui.io.standard.xml.svg.SVGParser
- parse(String) - Static method in class mgui.util.Colours
-
Parses a space-delimited list of numbers, and returns a colour of the appropriate size
- parse(String, int) - Static method in class mgui.util.Colours
-
Parses a space-delimited list of numbers, and returns a colour of size n
- parseArg(String) - Static method in class mgui.neuro.imaging.camino.CaminoFunctions
- parseArg(String) - Static method in class mgui.pipelines.PipelineFunctions
- parseArg(String, String, String) - Static method in class mgui.neuro.imaging.camino.CaminoFunctions
- parseArg(String, String, String) - Static method in class mgui.pipelines.PipelineFunctions
-
Parses an argument, replacing special symbols contained within "{" and "}" characters with their value; including: instance The current pipeline instance root The current root directory instances_dir The subdirectory for instance data (relative to root; note that root_dir will be prepended to this string, and instance will be appended) project_dir The subdirectory for project data (relative to root; note that root_dir will be prepended to this string)
- parseArg(String, String, String, String, String) - Static method in class mgui.pipelines.PipelineFunctions
-
Parses an argument, replacing special symbols contained within "{" and "}" characters with their value; including: instance The current pipeline instance root_dir The current root directory instances_dir The subdirectory for instance data (relative to root; note that root_dir will be prepended to this string, and instance will be appended) project_dir The subdirectory for project data (relative to root; note that root_dir will be prepended to this string)
- parseArg(String, String, InterfaceProject) - Static method in class mgui.pipelines.PipelineFunctions
-
Parses an argument, replacing special symbols contained within "{" and "}" characters with their value; including: instance The current pipeline instance root The current root directory instances_dir The subdirectory for instance data (relative to root; note that root_dir will be prepended to this string, and instance will be appended) project_dir The subdirectory for project data (relative to root; note that root_dir will be prepended to this string)
- parseClass(SVGPath, String) - Method in class mgui.io.standard.xml.svg.SVGParser
- parseColor(String) - Static method in class mgui.interfaces.xml.XMLFunctions
-
Parses a color string (three space-delimited values) and returns the corresponding font
- parseFill(SVGPath, String) - Method in class mgui.io.standard.xml.svg.SVGParser
- parseFont(String) - Static method in class mgui.interfaces.xml.XMLFunctions
-
Parses a font string (returned by Font.toString()) and returns the corresponding font
- parseMatrix(String) - Method in class mgui.io.standard.gifti.xml.GiftiXMLHandler
- parsePathData(SVGPath, String) - Method in class mgui.io.standard.xml.svg.SVGParser
- parseStroke(String) - Static method in class mgui.interfaces.xml.XMLFunctions
-
Parses the string for a BasicStroke.
- parseStyle(SVGStyle, String) - Method in class mgui.io.standard.xml.svg.SVGParser
- password - Variable in class mgui.datasources.DataSourceDriver
- path - Variable in class mgui.pipelines.NativeProcess
- PathDataRenderer - Class in mgui.interfaces.shapes.paths
-
Specifies how data attached to a path is to be rendered.
- PathDataRenderer() - Constructor for class mgui.interfaces.shapes.paths.PathDataRenderer
- paths - Variable in class mgui.io.standard.xml.svg.SVGParser
- pd_offset - Variable in class mgui.io.foreign.duff.DuffSurfaceHeader
- PerceptronNet - Class in mgui.neuro.networks
- PerceptronNet() - Constructor for class mgui.neuro.networks.PerceptronNet
- perform(InterfaceGraphic<?>, long) - Method in class mgui.interfaces.graphics.video.VideoTask
-
Performs this video task, for the given
time. - performOperationBlocking(Volume3DInt, Double, VolumeFunctions.Operation, ProgressUpdater) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Performs the specified operation on one grid and a constant value, and returns and new volume.
- performOperationBlocking(Volume3DInt, Volume3DInt, VolumeFunctions.Operation, ProgressUpdater) - Static method in class mgui.geometry.volume.VolumeFunctions
-
Performs the specified operation on the two volumes, and returns the result as a new
Grid3Dinstance. - performTransfer(TransferHandler.TransferSupport) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
- performTransfer(TransferHandler.TransferSupport) - Method in class mgui.interfaces.shapes.Shape2DInt
- performTransfer(TransferHandler.TransferSupport) - Method in class mgui.interfaces.shapes.Shape3DInt
-
Moves a list of shapes to a position above this shape in its parent set.
- performTransfer(TransferHandler.TransferSupport) - Method in class mgui.interfaces.shapes.ShapeModel3D
- performTransfer(TransferHandler.TransferSupport) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
- performTransfer(TransferHandler.TransferSupport) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
- performTransfer(TransferHandler.TransferSupport) - Method in interface mgui.interfaces.transfers.InterfaceTransferable
- PersistentObject - Interface in mgui.interfaces.io
-
Interface for objects which can be made persistent (loaded from and written to persistent memory).
- phase_dim - Variable in class mgui.io.standard.nifti.Nifti1Dataset
- pickCanvasGeom - Variable in class mgui.interfaces.graphics.InterfaceGraphic3D
- pickCanvasNode - Variable in class mgui.interfaces.graphics.InterfaceGraphic3D
- PickInfoShape2D - Class in mgui.interfaces.graphics.util
-
Provides information about a
Shape2DIntobject which has been intersected with a pick operation. - PickInfoShape2D(Shape2DInt, int, float) - Constructor for class mgui.interfaces.graphics.util.PickInfoShape2D
- pickShape(Point, int) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
- pipeline - Variable in class mgui.pipelines.PipelineFork
- pipeline - Variable in class mgui.pipelines.PipelineLauncher
- pipeline - Variable in class mgui.pipelines.PipelineProcessInstance
- pipeline - Variable in class mgui.pipelines.PipelineState
- Pipeline - mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree.PopupObject
- Pipeline - mgui.interfaces.pipelines.trees.PipelineTree.PopupObject
- Pipeline - mgui.interfaces.pipelines.trees.PipelineTreeTransferHandler.TransferType
- pipeline_flavor - Static variable in class mgui.interfaces.pipelines.trees.PipelineTreeTransferHandler
- PipelineException - Exception in mgui.pipelines
- PipelineException(String) - Constructor for exception mgui.pipelines.PipelineException
- PipelineFork - Class in mgui.pipelines
-
Represents a fork in a pipeline; i.e., a branching point, where the output of the previous process becomes the input of two or more independent pipelines.
- PipelineFork(String) - Constructor for class mgui.pipelines.PipelineFork
- PipelineFork(String, boolean) - Constructor for class mgui.pipelines.PipelineFork
- PipelineFork(String, boolean, Collection<InterfacePipeline>) - Constructor for class mgui.pipelines.PipelineFork
- PipelineFork(String, boolean, Collection<InterfacePipeline>, InterfacePipeline) - Constructor for class mgui.pipelines.PipelineFork
- PipelineFunctions - Class in mgui.pipelines
-
Provides a set of common functions operating on pipeline objects.
- PipelineFunctions() - Constructor for class mgui.pipelines.PipelineFunctions
- PipelineInputOptions - Class in mgui.io.domestic.pipelines
-
Options for loading a pipeline or multiple pipelines.
- PipelineInputOptions() - Constructor for class mgui.io.domestic.pipelines.PipelineInputOptions
- PipelineJob - Class in mgui.pipelines
- PipelineJob() - Constructor for class mgui.pipelines.PipelineJob
- pipelineLaunched(DynamicPipelineEvent) - Method in class mgui.interfaces.pipelines.InterfacePipelinesPanel
- pipelineLaunched(DynamicPipelineEvent) - Method in interface mgui.pipelines.DynamicPipelineListener
-
Called when a pipeline is initially launched
- pipelineLaunched(DynamicPipelineEvent) - Method in class mgui.pipelines.PipelineLauncher
- PipelineLauncher - Class in mgui.pipelines
-
A launcher for an
InterfacePipelineobject. - PipelineLauncher(InterfacePipeline) - Constructor for class mgui.pipelines.PipelineLauncher
- PipelineLauncher(InterfacePipeline, String, InterfaceProject) - Constructor for class mgui.pipelines.PipelineLauncher
- PipelineLoader - Class in mgui.io.domestic.pipelines
-
Loads a pipeline (or multiple pipelines) from file.
- PipelineLoader() - Constructor for class mgui.io.domestic.pipelines.PipelineLoader
- PipelineLoader(File) - Constructor for class mgui.io.domestic.pipelines.PipelineLoader
- PipelineModified - mgui.pipelines.StaticPipelineEvent.EventType
- PipelineOutputOptions - Class in mgui.io.domestic.pipelines
- PipelineOutputOptions() - Constructor for class mgui.io.domestic.pipelines.PipelineOutputOptions
- PipelineOutputOptions(ArrayList<InterfacePipeline>) - Constructor for class mgui.io.domestic.pipelines.PipelineOutputOptions
- PipelineProcess - Class in mgui.pipelines
-
Represents a Java process specification, specified by an executable process (native or Java) and a set of parameters.
- PipelineProcess() - Constructor for class mgui.pipelines.PipelineProcess
- PipelineProcessDialogBox - Class in mgui.interfaces.pipelines
-
A dialog box for creating or modifying a
PipelineProcess. - PipelineProcessDialogBox() - Constructor for class mgui.interfaces.pipelines.PipelineProcessDialogBox
- PipelineProcessDialogBox(InterfaceOptions) - Constructor for class mgui.interfaces.pipelines.PipelineProcessDialogBox
- PipelineProcessInstance - Class in mgui.pipelines
-
Represents a specific instance of a Java process.
- PipelineProcessInstance() - Constructor for class mgui.pipelines.PipelineProcessInstance
- PipelineProcessInstance(PipelineProcessInstance) - Constructor for class mgui.pipelines.PipelineProcessInstance
- PipelineProcessInstance(PipelineProcess, int) - Constructor for class mgui.pipelines.PipelineProcessInstance
- PipelineProcessInstanceDialogBox - Class in mgui.interfaces.pipelines
-
Dialog box for specifying a pipeline process instance.
- PipelineProcessInstanceDialogBox() - Constructor for class mgui.interfaces.pipelines.PipelineProcessInstanceDialogBox
- PipelineProcessInstanceDialogBox(JFrame, PipelineProcessInstanceOptions) - Constructor for class mgui.interfaces.pipelines.PipelineProcessInstanceDialogBox
- PipelineProcessInstanceOptions - Class in mgui.interfaces.pipelines
-
Options for a pipeline process instance.
- PipelineProcessInstanceOptions(PipelineProcessInstance) - Constructor for class mgui.interfaces.pipelines.PipelineProcessInstanceOptions
- PipelineProcessLibrary - Class in mgui.interfaces.pipelines.libraries
-
Represents a collection of
PipelineProcesses, typically referring to the same underlying software library. - PipelineProcessLibrary(String) - Constructor for class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
- PipelineProcessLibraryLoader - Class in mgui.io.domestic.pipelines
-
Loads a
PipelineProcessLibraryfrom file. - PipelineProcessLibraryLoader() - Constructor for class mgui.io.domestic.pipelines.PipelineProcessLibraryLoader
- PipelineProcessLibraryLoader(File) - Constructor for class mgui.io.domestic.pipelines.PipelineProcessLibraryLoader
- PipelineProcessLibraryOptions - Class in mgui.interfaces.pipelines.libraries
-
Options for a PipelineProcessLibrary
- PipelineProcessLibraryOptions(PipelineProcessLibrary) - Constructor for class mgui.interfaces.pipelines.libraries.PipelineProcessLibraryOptions
- PipelineProcessLibraryWriter - Class in mgui.io.domestic.pipelines
-
Writes a
PipelineProcessLibraryto file. - PipelineProcessLibraryWriter() - Constructor for class mgui.io.domestic.pipelines.PipelineProcessLibraryWriter
- PipelineProcessLibraryWriter(File) - Constructor for class mgui.io.domestic.pipelines.PipelineProcessLibraryWriter
- PipelineProcessLibraryXMLHandler - Class in mgui.io.domestic.pipelines
-
XML handler for reading pipeline process libraries.
- PipelineProcessLibraryXMLHandler() - Constructor for class mgui.io.domestic.pipelines.PipelineProcessLibraryXMLHandler
- PipelineProcessOptions - Class in mgui.interfaces.pipelines
-
Options for a
PipelineProcess. - PipelineProcessOptions() - Constructor for class mgui.interfaces.pipelines.PipelineProcessOptions
- PipelineProcessOptions(PipelineProcess) - Constructor for class mgui.interfaces.pipelines.PipelineProcessOptions
- pipelines - Variable in class mgui.interfaces.InterfaceWorkspace
- pipelines - Variable in class mgui.io.domestic.pipelines.PipelineOutputOptions
- pipelines - Variable in class mgui.neuro.imaging.camino.CaminoProject
- pipelines - Variable in class mgui.pipelines.PipelineFork
- pipelinesNode - Variable in class mgui.interfaces.InterfaceWorkspace
- PipelineState - Class in mgui.pipelines
-
Represents the state of a pipeline.
- PipelineState(InterfacePipeline) - Constructor for class mgui.pipelines.PipelineState
-
Construct a new pipeline state for the given pipeline.
- PipelineState.ErrorStreamListener - Class in mgui.pipelines
- PipelineTask - Class in mgui.pipelines
-
A task is a launchable component of a pipeline.
- PipelineTask() - Constructor for class mgui.pipelines.PipelineTask
- PipelineTask(String) - Constructor for class mgui.pipelines.PipelineTask
- PipelineTask.Status - Enum in mgui.pipelines
- PipelineTaskEvent - Class in mgui.pipelines
- PipelineTaskEvent(PipelineTask) - Constructor for class mgui.pipelines.PipelineTaskEvent
- pipelineTaskLaunched(DynamicPipelineEvent, PipelineTask) - Method in class mgui.interfaces.pipelines.InterfacePipelinesPanel
- pipelineTaskLaunched(DynamicPipelineEvent, PipelineTask) - Method in interface mgui.pipelines.DynamicPipelineListener
-
Called when a pipeline task is launched.
- pipelineTaskLaunched(DynamicPipelineEvent, PipelineTask) - Method in class mgui.pipelines.PipelineLauncher
- PipelineTaskListener - Interface in mgui.pipelines
- pipelineTaskTerminated(DynamicPipelineEvent, PipelineTask) - Method in class mgui.interfaces.pipelines.InterfacePipelinesPanel
- pipelineTaskTerminated(DynamicPipelineEvent, PipelineTask) - Method in interface mgui.pipelines.DynamicPipelineListener
-
Called when a pipeline task is terminated.
- pipelineTaskTerminated(DynamicPipelineEvent, PipelineTask) - Method in class mgui.pipelines.PipelineLauncher
- pipelineTaskUpdated(DynamicPipelineEvent, PipelineTask) - Method in class mgui.interfaces.pipelines.InterfacePipelinesPanel
- pipelineTaskUpdated(DynamicPipelineEvent, PipelineTask) - Method in interface mgui.pipelines.DynamicPipelineListener
-
Called when a pipeline task requests to publish an update.
- pipelineTaskUpdated(DynamicPipelineEvent, PipelineTask) - Method in class mgui.pipelines.PipelineLauncher
- pipelineTerminated(DynamicPipelineEvent) - Method in class mgui.interfaces.pipelines.InterfacePipelinesPanel
- pipelineTerminated(DynamicPipelineEvent) - Method in interface mgui.pipelines.DynamicPipelineListener
-
Called when a pipeline is terminated.
- pipelineTerminated(DynamicPipelineEvent) - Method in class mgui.pipelines.PipelineLauncher
- PipelineTree - Class in mgui.interfaces.pipelines.trees
-
Implements a tree interface for ModelGUI pipelines.
- PipelineTree() - Constructor for class mgui.interfaces.pipelines.trees.PipelineTree
- PipelineTree(InterfacePipeline) - Constructor for class mgui.interfaces.pipelines.trees.PipelineTree
- PipelineTree.PopupObject - Enum in mgui.interfaces.pipelines.trees
- PipelineTreeTransferHandler - Class in mgui.interfaces.pipelines.trees
- PipelineTreeTransferHandler() - Constructor for class mgui.interfaces.pipelines.trees.PipelineTreeTransferHandler
- PipelineTreeTransferHandler.TransferType - Enum in mgui.interfaces.pipelines.trees
- pipelineUpdated(StaticPipelineEvent) - Method in class mgui.interfaces.InterfaceWorkspace
- pipelineUpdated(StaticPipelineEvent) - Method in class mgui.interfaces.pipelines.InterfacePipelinesPanel
- pipelineUpdated(StaticPipelineEvent) - Method in class mgui.interfaces.pipelines.trees.PipelineTree
- pipelineUpdated(StaticPipelineEvent) - Method in interface mgui.pipelines.StaticPipelineListener
-
Called when a static change is made to a pipeline.
- PipelineWriter - Class in mgui.io.domestic.pipelines
-
Writes an
InterfacePipelineinstance to file. - PipelineWriter() - Constructor for class mgui.io.domestic.pipelines.PipelineWriter
- PipelineWriter(File) - Constructor for class mgui.io.domestic.pipelines.PipelineWriter
- PipelineXMLHandler - Class in mgui.io.domestic.pipelines
-
Handler for XML encoding of modelGUI pipelines.
- PipelineXMLHandler() - Constructor for class mgui.io.domestic.pipelines.PipelineXMLHandler
- pixdim - Variable in class mgui.io.standard.nifti.Nifti1Dataset
- Plain - mgui.io.domestic.datasources.DataSourceLoader.FileType
- Plain - mgui.io.domestic.datasources.DataSourceWriter.FileType
- plane - Variable in class mgui.interfaces.shapes.util.ClipPlane
- plane_is_changed - Variable in class mgui.interfaces.shapes.util.Plane3DDialog
- Plane3D - Class in mgui.geometry
-
Represents a plane in 3 dimensions, using a Point3d and a Vector3d (normal)
- Plane3D() - Constructor for class mgui.geometry.Plane3D
- Plane3D(Plane3D) - Constructor for class mgui.geometry.Plane3D
- Plane3D(Point3f, Point3f, Point3f) - Constructor for class mgui.geometry.Plane3D
- Plane3D(Point3f, Vector3f, Vector3f) - Constructor for class mgui.geometry.Plane3D
- Plane3D(Point3f, Vector3f, Vector3f, boolean) - Constructor for class mgui.geometry.Plane3D
- Plane3DDialog - Class in mgui.interfaces.shapes.util
-
Dialog box to specify a plane 3D
- Plane3DDialog(JFrame) - Constructor for class mgui.interfaces.shapes.util.Plane3DDialog
- Plane3DDialog(JFrame, Plane3D) - Constructor for class mgui.interfaces.shapes.util.Plane3DDialog
- Plane3DInt - Class in mgui.interfaces.shapes
- Plane3DInt() - Constructor for class mgui.interfaces.shapes.Plane3DInt
- planePoly - Variable in class mgui.interfaces.shapes.Volume2DInt
- planeRect - Variable in class mgui.interfaces.shapes.Volume2DInt
- plateau_slope - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
- plot - Variable in class mgui.interfaces.plots.InterfacePlotOptions
- plot - Variable in class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog
- plot - Variable in class mgui.interfaces.plots.sgt.SgtScatterPlotDialog
- plot_background - Variable in class mgui.interfaces.plots.sgt.SgtPlotLayoutOptions
-
Main pane color
- plot_layout - Variable in class mgui.interfaces.plots.sgt.InterfacePlotSgt
- PlotDisplay - mgui.interfaces.graphics.InterfaceGraphic.GraphicType
- PlotException - Exception in mgui.interfaces.plots
-
Plotting-related exception.
- PlotException(String) - Constructor for exception mgui.interfaces.plots.PlotException
- PlotInputException - Exception in mgui.interfaces.plots
- PlotInputException(String) - Constructor for exception mgui.interfaces.plots.PlotInputException
- PlotMap2D - Class in mgui.interfaces.plots.mgui
-
Specifies a mapping from data units to plot units and to graphic units.
- PlotMap2D() - Constructor for class mgui.interfaces.plots.mgui.PlotMap2D
- PlotMap2D.AxisType - Enum in mgui.interfaces.plots.mgui
- plotObjectAdded(SgtPlotEvent) - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
- plotObjectAdded(SgtPlotEvent) - Method in interface mgui.interfaces.plots.sgt.SgtPlotListener
-
Updates this plot in response to an additional data object.
- plotObjectModified(SgtPlotEvent) - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
- plotObjectModified(SgtPlotEvent) - Method in interface mgui.interfaces.plots.sgt.SgtPlotListener
-
Updates this plot in response to the modification of a data object.
- plotObjectRemoved(SgtPlotEvent) - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
- plotObjectRemoved(SgtPlotEvent) - Method in interface mgui.interfaces.plots.sgt.SgtPlotListener
-
Updates this plot in response to the removal of a data object.
- plots - Variable in class mgui.interfaces.InterfaceWorkspace
- plots - Variable in class mgui.interfaces.plots.InterfacePlotMulti
- plots - Variable in class mgui.interfaces.plots.osp.InterfaceStripChart
- PlotTimeSeriesDataSource<T extends MguiNumber> - Class in mgui.interfaces.plots
-
A plot data source for XY data, with multiple named Y channels.
- PlotTimeSeriesDataSource() - Constructor for class mgui.interfaces.plots.PlotTimeSeriesDataSource
- PlotTimeSeriesDataSource(int, int) - Constructor for class mgui.interfaces.plots.PlotTimeSeriesDataSource
- PlotXYDataSource<T extends MguiNumber> - Class in mgui.interfaces.plots
-
Plot data source for X-Y data sets.
- PlotXYDataSource() - Constructor for class mgui.interfaces.plots.PlotXYDataSource
- PlotXYDataSource(int) - Constructor for class mgui.interfaces.plots.PlotXYDataSource
- plugins - Variable in class mgui.interfaces.tools.graphs.ToolGraph
- PLUS_X - Static variable in interface mgui.io.foreign.vol.VolRendConstants
- PLUS_Y - Static variable in interface mgui.io.foreign.vol.VolRendConstants
- PLUS_Z - Static variable in interface mgui.io.foreign.vol.VolRendConstants
- pMaskAll - Variable in class mgui.interfaces.shapes.volume.VolumeMaskDialog_old
- pMaskAxis1 - Variable in class mgui.interfaces.shapes.volume.VolumeMaskDialog_old
- pMaskAxis2 - Variable in class mgui.interfaces.shapes.volume.VolumeMaskDialog_old
- pMaskAxis3 - Variable in class mgui.interfaces.shapes.volume.VolumeMaskDialog_old
- pMaskBox - Variable in class mgui.interfaces.shapes.volume.VolumeMaskDialog_old
- pMaskSphere - Variable in class mgui.interfaces.shapes.volume.VolumeMaskDialog_old
- pMaskWedge - Variable in class mgui.interfaces.shapes.volume.VolumeMaskDialog_old
- point - Variable in class mgui.geometry.Point2D
- point - Variable in class mgui.geometry.util.GeometryFunctions.AnglePoint2D
- point - Variable in class mgui.morph.sections.AttributeNode2D
- point_set - Variable in class mgui.interfaces.tools.shapes.ToolGetConvexHull2DOptions
- Point2D - Class in mgui.geometry
-
Represents a 2D point.
- Point2D(float, float) - Constructor for class mgui.geometry.Point2D
- Point2D(Point2f) - Constructor for class mgui.geometry.Point2D
- Point2DInt - Class in mgui.interfaces.shapes
- Point2DInt(Point2D) - Constructor for class mgui.interfaces.shapes.Point2DInt
- Point2DInt(Point2D, Color, int) - Constructor for class mgui.interfaces.shapes.Point2DInt
- Point2DShape - Class in mgui.interfaces.shapes.util
-
Represents a 2D point object, rendering a vector at a specified coordinate
- Point2DShape(ArrayList<Shape>, ArrayList<Boolean>) - Constructor for class mgui.interfaces.shapes.util.Point2DShape
- Point2DShapeLoader - Class in mgui.io.domestic.shapes
- Point2DShapeLoader(File) - Constructor for class mgui.io.domestic.shapes.Point2DShapeLoader
- Point3d - Class in au.edu.unsw.cse
- Point3d() - Constructor for class au.edu.unsw.cse.Point3d
- Point3d(double, double, double) - Constructor for class au.edu.unsw.cse.Point3d
- Point3dObject3d - Class in au.edu.unsw.cse
-
A Point3d that is also an Object 3d so that it can be rendered
- Point3dObject3d(Point3d) - Constructor for class au.edu.unsw.cse.Point3dObject3d
- Point3dObject3d(Point3d, int) - Constructor for class au.edu.unsw.cse.Point3dObject3d
- Point3fComp() - Constructor for class mgui.geometry.util.GeometryFunctions.Point3fComp
- Point3fComparatorX() - Constructor for class mgui.interfaces.shapes.util.ShapeFunctions.Point3fComparatorX
- Point3fComparatorY() - Constructor for class mgui.interfaces.shapes.util.ShapeFunctions.Point3fComparatorY
- Point3fComparatorZ() - Constructor for class mgui.interfaces.shapes.util.ShapeFunctions.Point3fComparatorZ
- Points3d - Class in au.edu.unsw.cse
- Points3d() - Constructor for class au.edu.unsw.cse.Points3d
- pointset - Variable in class mgui.io.domestic.shapes.PointSet3DDataInputOptions
- PointSet2D - Class in mgui.geometry
-
Represents a set of 2D points.
- PointSet2D() - Constructor for class mgui.geometry.PointSet2D
- PointSet2D(float[]) - Constructor for class mgui.geometry.PointSet2D
- PointSet2DInputDialogBox - Class in mgui.io.domestic.shapes
- PointSet2DInputDialogBox() - Constructor for class mgui.io.domestic.shapes.PointSet2DInputDialogBox
- PointSet2DInputDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.domestic.shapes.PointSet2DInputDialogBox
- PointSet2DInputDialogBox.TableModel - Class in mgui.io.domestic.shapes
- PointSet2DInputOptions - Class in mgui.io.domestic.shapes
-
Options for loading a PointSet2DInt object.
- PointSet2DInputOptions() - Constructor for class mgui.io.domestic.shapes.PointSet2DInputOptions
- PointSet2DInt - Class in mgui.interfaces.shapes
-
Shape interface for a set of 2D vertices.
- PointSet2DInt() - Constructor for class mgui.interfaces.shapes.PointSet2DInt
- PointSet2DInt(PointSet2D) - Constructor for class mgui.interfaces.shapes.PointSet2DInt
- PointSet2DLoader - Class in mgui.io.domestic.shapes
-
Loader class for PointSet2DInt objects.
- PointSet2DLoader() - Constructor for class mgui.io.domestic.shapes.PointSet2DLoader
- PointSet2DLoader(File) - Constructor for class mgui.io.domestic.shapes.PointSet2DLoader
- PointSet3D - Class in mgui.geometry
-
Represents a set of 3D points.
- PointSet3D() - Constructor for class mgui.geometry.PointSet3D
- PointSet3D(float[]) - Constructor for class mgui.geometry.PointSet3D
- PointSet3D(PointSet3D) - Constructor for class mgui.geometry.PointSet3D
- PointSet3DDataInputDialogBox - Class in mgui.io.domestic.shapes
- PointSet3DDataInputDialogBox() - Constructor for class mgui.io.domestic.shapes.PointSet3DDataInputDialogBox
- PointSet3DDataInputDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.domestic.shapes.PointSet3DDataInputDialogBox
- PointSet3DDataInputDialogBox.TableModel - Class in mgui.io.domestic.shapes
- PointSet3DDataInputOptions - Class in mgui.io.domestic.shapes
- PointSet3DDataInputOptions() - Constructor for class mgui.io.domestic.shapes.PointSet3DDataInputOptions
- PointSet3DDataLoader - Class in mgui.io.domestic.shapes
- PointSet3DDataLoader() - Constructor for class mgui.io.domestic.shapes.PointSet3DDataLoader
- PointSet3DDataLoader(File) - Constructor for class mgui.io.domestic.shapes.PointSet3DDataLoader
- PointSet3DInputDialogBox - Class in mgui.io.domestic.shapes
- PointSet3DInputDialogBox() - Constructor for class mgui.io.domestic.shapes.PointSet3DInputDialogBox
- PointSet3DInputDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.domestic.shapes.PointSet3DInputDialogBox
- PointSet3DInputDialogBox.TableModel - Class in mgui.io.domestic.shapes
- PointSet3DInputOptions - Class in mgui.io.domestic.shapes
-
Options for loading a PointSet3DInt object.
- PointSet3DInputOptions() - Constructor for class mgui.io.domestic.shapes.PointSet3DInputOptions
- PointSet3DInt - Class in mgui.interfaces.shapes
-
Shape interface for a set of 3D points.
- PointSet3DInt() - Constructor for class mgui.interfaces.shapes.PointSet3DInt
- PointSet3DInt(PointSet3D) - Constructor for class mgui.interfaces.shapes.PointSet3DInt
- PointSet3DInt(PointSet3D, String) - Constructor for class mgui.interfaces.shapes.PointSet3DInt
- PointSet3DLoader - Class in mgui.io.domestic.shapes
-
Domestic loader for a 3D point set.
- PointSet3DLoader() - Constructor for class mgui.io.domestic.shapes.PointSet3DLoader
- PointSet3DLoader(File) - Constructor for class mgui.io.domestic.shapes.PointSet3DLoader
- PointStack - Class in au.edu.unsw.cse
-
This class stores the points that still need to be processed.
- PointStack() - Constructor for class au.edu.unsw.cse.PointStack
- Polar - mgui.interfaces.plots.sgt.SgtPlotLayout.GraphType
- Polygon2D - Class in mgui.geometry
-
Represents a series of connected 2D points, defining either a polyline or a closed polygon.
- Polygon2D() - Constructor for class mgui.geometry.Polygon2D
- Polygon2D(ArrayList<Point2f>) - Constructor for class mgui.geometry.Polygon2D
- Polygon2D(ArrayList<Point2f>, ArrayList<Boolean>) - Constructor for class mgui.geometry.Polygon2D
- Polygon2DInt - Class in mgui.interfaces.shapes
-
Interface for a 2D polygon.
- Polygon2DInt() - Constructor for class mgui.interfaces.shapes.Polygon2DInt
- Polygon2DInt(Polygon2D) - Constructor for class mgui.interfaces.shapes.Polygon2DInt
- Polygon3d - Class in au.edu.unsw.cse
- Polygon3d(Point3d[], Color) - Constructor for class au.edu.unsw.cse.Polygon3d
-
Create a polygon with given colour
- Polygon3D - Class in mgui.geometry
-
Geometry class for a polygon in R3.
- Polygon3D() - Constructor for class mgui.geometry.Polygon3D
- Polygon3D(ArrayList<Point3f>) - Constructor for class mgui.geometry.Polygon3D
- Polygon3D(Point3f[]) - Constructor for class mgui.geometry.Polygon3D
- Polygon3DInt - Class in mgui.interfaces.shapes
-
Interface for a 3D polygon object.
- Polygon3DInt() - Constructor for class mgui.interfaces.shapes.Polygon3DInt
- Polygon3DInt(Polygon3D) - Constructor for class mgui.interfaces.shapes.Polygon3DInt
- Polygon3DInt(Polygon3D, String) - Constructor for class mgui.interfaces.shapes.Polygon3DInt
- PolygonEngine - Class in mgui.geometry.polygon
- PolygonEngine() - Constructor for class mgui.geometry.polygon.PolygonEngine
- PolygonFunctions - Class in mgui.geometry.polygon
-
25 July, 2009 This file is part of modelGUI[core] (mgui-core).
- PolygonFunctions() - Constructor for class mgui.geometry.polygon.PolygonFunctions
- PolygonFunctions.PolyDirection - Enum in mgui.geometry.polygon
- polygonizeCell(Point3f[], double[], ArrayList<Point3f>, double) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Uses the marching cubes lookup tables to find triangular faces intersecting the given grid cell at the given isolevel
- polygons - Variable in class mgui.interfaces.shapes.PolygonSet3DInt
- PolygonSet3DInputDialogBox - Class in mgui.io.domestic.shapes
- PolygonSet3DInputDialogBox() - Constructor for class mgui.io.domestic.shapes.PolygonSet3DInputDialogBox
- PolygonSet3DInputDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.domestic.shapes.PolygonSet3DInputDialogBox
- PolygonSet3DInputDialogBox.TableModel - Class in mgui.io.domestic.shapes
- PolygonSet3DInputOptions - Class in mgui.io.domestic.shapes
-
Options for loading a PolygonSet3DInt object.
- PolygonSet3DInputOptions() - Constructor for class mgui.io.domestic.shapes.PolygonSet3DInputOptions
- PolygonSet3DInt - Class in mgui.interfaces.shapes
-
Interface for a set of 3D polygons.
- PolygonSet3DInt() - Constructor for class mgui.interfaces.shapes.PolygonSet3DInt
- PolygonSet3DLoader - Class in mgui.io.domestic.shapes
-
Loads a set of 3D polygon objects (*.poly3d) from text.
- PolygonSet3DLoader() - Constructor for class mgui.io.domestic.shapes.PolygonSet3DLoader
- populate(DataRecordSet) - Method in class mgui.datasources.DataIndex
-
Populates this index with data from
recordset. - populateComboBox(JComboBox) - Method in class mgui.interfaces.attributes.AttributeSelectionMap
- populateShapeCombo(JComboBox) - Method in class mgui.interfaces.InterfaceWorkspace
- populateShapeSetCombo(JComboBox) - Method in class mgui.interfaces.InterfaceWorkspace
- populateShapeTypeCombo(JComboBox, Shape3DInt) - Method in class mgui.interfaces.InterfaceWorkspace
- popup_handler - Variable in class mgui.interfaces.trees.InterfaceTreeNode
- popup_menu - Variable in class mgui.interfaces.trees.InterfaceTreeNode
- popupMenuCanceled(PopupMenuEvent) - Method in class mgui.interfaces.gui.InterfaceComboBoxBak
- PopupMenuObject - Interface in mgui.interfaces.menus
-
Interface which should be implemented for all graphical objects which require popup menu functionality.
- popupMenuWillBecomeInvisible(PopupMenuEvent) - Method in class mgui.interfaces.gui.InterfaceComboBoxBak
- popupMenuWillBecomeVisible(PopupMenuEvent) - Method in class mgui.interfaces.gui.InterfaceComboBoxBak
- popupWidth - Variable in class mgui.interfaces.gui.InterfaceComboBox
- position() - Method in class mgui.io.util.BufferedRandomAccessFile
- position(long) - Method in class mgui.io.util.BufferedRandomAccessFile
- post_render - Variable in class mgui.interfaces.graphics.PostRenderingCanvas3D
- post_render_shapes - Variable in class mgui.interfaces.graphics.PostRenderingCanvas3D
- post_render_tasks - Variable in class mgui.interfaces.graphics.InterfaceGraphic
- PostgreSQLDriver - Class in mgui.datasources.postgresql
-
Specifies the driver for PostgreSQL connectivity.
- PostgreSQLDriver() - Constructor for class mgui.datasources.postgresql.PostgreSQLDriver
- PostgreSQLDriver(String, String, String) - Constructor for class mgui.datasources.postgresql.PostgreSQLDriver
- postRender() - Method in class mgui.interfaces.graphics.InterfaceCanvas3D
- postRender() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
-
Executes any post-rendering tasks, called through the
postSwapmethod ofPostRenderingCanvas3D. - postRender() - Method in class mgui.interfaces.graphics.PostRenderingCanvas3D
- PostRenderingCanvas3D - Class in mgui.interfaces.graphics
-
Extends
Canvas3Dto provide post-rendering capabilities. - PostRenderingCanvas3D(InterfaceCanvas3D, GraphicsConfiguration) - Constructor for class mgui.interfaces.graphics.PostRenderingCanvas3D
- PostRenderingCanvas3D(InterfaceCanvas3D, GraphicsConfiguration, boolean) - Constructor for class mgui.interfaces.graphics.PostRenderingCanvas3D
- postSwap() - Method in class mgui.interfaces.graphics.PostRenderingCanvas3D
- potential - Variable in class mgui.neuro.components.compartments.AbstractCompartment
- potential - Variable in class mgui.neuro.components.simple.SimpleDendriteEvent
- potential - Variable in class mgui.neuro.components.simple.SimpleSoma
- potential - Variable in class mgui.neuro.components.simple.SimpleSynapse
- potential - Variable in class mgui.neuro.components.simple.SimpleSynapseEvent
- PowerfulTokenizer - Class in mgui.util
- PowerfulTokenizer(String, String) - Constructor for class mgui.util.PowerfulTokenizer
-
Constructor
- PowerfulTokenizer(String, String, boolean) - Constructor for class mgui.util.PowerfulTokenizer
-
Constructor
- powerOfTwo(int) - Static method in class mgui.geometry.volume.VolumeFunctions
- powerOfTwo(int) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
- precision - Variable in class mgui.io.domestic.datasources.ExportDataTableTextOptions
- precision - Variable in class mgui.io.domestic.variables.DefaultMatrixFileWriter
- precision - Variable in class mgui.io.domestic.variables.MatrixOutOptions
- precision - Variable in class mgui.io.foreign.duff.DuffSurfaceHeader
- preConcatenate(AffineTransform) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
- preferred_y - Variable in class mgui.interfaces.maps.DiscreteColourMapLayout
- preferredLayoutSize(Container) - Method in class au.edu.unsw.cse.StackLayout
- preferredLayoutSize(Container) - Method in class mgui.interfaces.layouts.LineLayout
- preferredSize - Variable in class mgui.interfaces.layouts.LineLayout
- prefillCache() - Method in class mgui.interfaces.datasources.DataTableModel
- prefix - Variable in class mgui.interfaces.graphs.util.GraphFunctions.EdgeFactory
- prefix - Variable in class mgui.interfaces.graphs.util.GraphFunctions.NodeFactory
- prefix - Variable in class mgui.interfaces.tools.shapes.ToolCutMeshWithPlaneOptions
- prefixStr - Variable in class mgui.io.standard.xml.svg.SVGInputOptions
- prepend_instance_input - Variable in class mgui.pipelines.PipelineProcessInstance
- prepend_instance_output - Variable in class mgui.pipelines.PipelineProcessInstance
- prepend_subject_name - Variable in class mgui.interfaces.neuro.CorticalThicknessOptions
- preserveVolExisting - Variable in class mgui.interfaces.neuro.CorticalThicknessOptions
- prev - Variable in class au.edu.unsw.cse.AnimationWidget
- prev() - Method in class au.edu.unsw.cse.AnimationWidget
- prev() - Method in class au.edu.unsw.cse.AnimationWidgetVRML
- prevAngle - Variable in class mgui.interfaces.shapes.volume.Volume3DRenderer
- previous_tool - Variable in class mgui.interfaces.tools.graphics.Tool3D
- previous_value - Variable in class mgui.pipelines.StaticPipelineEvent
- previousIndex(int) - Method in class mgui.geometry.volume.TricubicSplineInterpolaterUpdater
-
Compute the previous index of an array, clipping if necessary.
- previousSet - Variable in class mgui.neuro.stats.SimpleStatistics
- prevSect - Variable in class mgui.morph.sections.MappedPolygon2D
- PrimaryKeyChanged - mgui.datasources.DataFieldEvent.EventCode
- printall() - Static method in class au.edu.unsw.cse.Timer
- printAll() - Method in class mgui.io.foreign.caret.CaretPaintLoader.Header
- printCamera() - Method in class mgui.interfaces.maps.Camera3D
- printDoubleTmcrs(double[]) - Method in class mgui.io.standard.nifti.Nifti1Dataset
-
Print a voxel timecourse to standard out.
- printHeader() - Method in class mgui.io.standard.nifti.Nifti1Dataset
-
Print header information to standard out.
- printMap() - Method in class mgui.morph.sections.MappedPolygon2D
- printMap() - Method in class mgui.morph.sections.MorphNodeMap2D
- printNodes() - Method in class mgui.interfaces.shapes.Shape2DInt
- printRep() - Method in class mgui.morph.sections.RadialRep2D
- printRep() - Method in class mgui.morph.sections.RadialRepresentation
- printToConsole() - Method in class mgui.interfaces.maps.ColourMap
- printWeights(double[][]) - Method in class mgui.morph.sections.MappedPolygon2D
- process - Variable in class mgui.interfaces.neuro.imaging.camino.CaminoProcessOptions
- process - Variable in class mgui.interfaces.pipelines.PipelineProcessOptions
- process - Variable in class mgui.pipelines.PipelineJob
- process - Variable in class mgui.pipelines.PipelineProcessInstance
- process(List<PipelineLauncher.TaskEvent>) - Method in class mgui.pipelines.PipelineLauncher
- Process - mgui.interfaces.pipelines.trees.PipelineTree.PopupObject
- process_instance - Variable in class mgui.interfaces.pipelines.PipelineProcessInstanceOptions
- processAWTEvents(AWTEvent[]) - Method in class mgui.interfaces.tools.ToolBehavior3DAdapter
- processCompleted(PipelineProcessInstance, boolean, PipelineState) - Static method in class mgui.pipelines.PipelineFunctions
-
Called when a
SwingWorkerinvoked bylaunchPipelineProcesscompletes. - processes - Variable in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
- processes - Variable in class mgui.io.domestic.pipelines.PipelineProcessLibraryXMLHandler
- processes - Static variable in class mgui.neuro.imaging.camino.CaminoEnvironment
- processes - Static variable in class mgui.neuro.imaging.camino.CaminoProcesses
- Processing - mgui.pipelines.PipelineTask.Status
- processingFinished(boolean, PipelineState) - Method in class mgui.pipelines.PipelineProcessInstance
-
Called when a process worker thread finishes execution or terminates unexpectedly.
- processMouseEvent(MouseEvent) - Method in class mgui.interfaces.tools.MouseBehavior
- processMouseWheelEvent(MouseWheelEvent) - Method in class mgui.interfaces.tools.MouseBehavior
- processStimulus(Iterator<WakeupCriterion>) - Method in class mgui.interfaces.maps.Camera3DLight
- progressBar - Static variable in class mgui.geometry.mesh.MeshFunctions
- progressBar - Variable in class mgui.interfaces.gui.InterfaceProgressBar
- ProgressUpdater - Interface in mgui.interfaces
-
Interface specifying methods to enable progress updates.
- ProgressUpdater.Mode - Enum in mgui.interfaces
- project - Variable in class mgui.interfaces.neuro.imaging.camino.CaminoProjectOptions
- project - Variable in class mgui.interfaces.projects.InterfaceProjectOptions
- project - Variable in class mgui.interfaces.projects.util.ProjectOptions
- project - Variable in class mgui.pipelines.PipelineLauncher
- ProjectDataItem - Class in mgui.interfaces.projects
-
Specifies a data item in a modelGUI project, including its name, its I/O classes, and its filename form (a pattern identifying the location or URL of the item).
- ProjectDataItem(String, String) - Constructor for class mgui.interfaces.projects.ProjectDataItem
- ProjectDirectory - Class in mgui.interfaces.projects
-
Specifies a project directory, including its subdirectories and all prespecified data items that it contains.
- ProjectDirectory(String) - Constructor for class mgui.interfaces.projects.ProjectDirectory
- ProjectDirectoryDialogBox - Class in mgui.interfaces.projects
-
Dialog box to define a
ProjectDirectory, and in particular the list ofProjectDataItems it contains. - ProjectDirectoryDialogBox() - Constructor for class mgui.interfaces.projects.ProjectDirectoryDialogBox
- ProjectDirectoryDialogBox(JFrame, ProjectDirectoryOptions) - Constructor for class mgui.interfaces.projects.ProjectDirectoryDialogBox
- ProjectDirectoryOptions - Class in mgui.interfaces.projects
-
Options for a
ProjectDirectory. - ProjectDirectoryOptions() - Constructor for class mgui.interfaces.projects.ProjectDirectoryOptions
- ProjectFunctions - Class in mgui.interfaces.projects.util
-
Utilities for InterfaceProject objects.
- ProjectFunctions() - Constructor for class mgui.interfaces.projects.util.ProjectFunctions
- ProjectInstance - Class in mgui.interfaces.projects
-
Specifies an element instance in a project (e.g., a subject).
- ProjectInstance(String) - Constructor for class mgui.interfaces.projects.ProjectInstance
- ProjectInstance(String, String) - Constructor for class mgui.interfaces.projects.ProjectInstance
- ProjectInstanceGroup - Class in mgui.interfaces.projects
-
Represents a group partition in a project, which refers to a set of subdirectories within the instances directory, each representing a different level of the group.
- ProjectInstanceGroup(String, ArrayList<String>) - Constructor for class mgui.interfaces.projects.ProjectInstanceGroup
-
Constructs a new instance group, and a list of levels.
- ProjectIOException - Exception in mgui.interfaces.projects
- ProjectIOException(String) - Constructor for exception mgui.interfaces.projects.ProjectIOException
- projection_plane - Variable in class mgui.interfaces.graphs.layouts.CoordinateLayout
- projection_plane - Variable in class mgui.interfaces.shapes.graphs.util.Graph2DLayout
- ProjectOptions - Class in mgui.interfaces.projects.util
-
Options for a project.
- ProjectOptions(InterfaceProject) - Constructor for class mgui.interfaces.projects.util.ProjectOptions
- projects - Variable in class mgui.interfaces.InterfaceWorkspace
- property_name - Variable in class mgui.io.foreign.trackvis.TrackVisTractHeader
- propertyAdapter - Variable in class mgui.interfaces.graphics.InterfaceGraphic2DTextBox
- propertyAdapter - Variable in class mgui.interfaces.graphics.InterfaceGraphicTextBox
- propertyChange(PropertyChangeEvent) - Method in class mgui.interfaces.gui.ColourBarOutDialog
- propertyChange(PropertyChangeEvent) - Method in class mgui.interfaces.gui.InterfaceProgressBar
- propertyChange(PropertyChangeEvent) - Method in class mgui.interfaces.gui.RowNumberTable
- propertyChange(PropertyChangeEvent) - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
- propertyChange(PropertyChangeEvent) - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
- prototype - Variable in class mgui.io.domestic.network.CorticalNetworkMatrixInOptions
- pt - Variable in class mgui.geometry.mesh.MeshFunctions.IndexedPoint3f
- pt - Variable in class mgui.geometry.util.SortedShape3D.Vertex
- pt1 - Variable in class mgui.geometry.LineSegment2D
- pt1 - Variable in class mgui.geometry.LineSegment3D
- pt2 - Variable in class mgui.geometry.LineSegment2D
- pt2 - Variable in class mgui.geometry.LineSegment3D
- pts - Variable in class au.edu.unsw.cse.Points3d
- pts - Variable in class au.edu.unsw.cse.QuadMesh3d
- pulses - Variable in class mgui.models.updaters.PulseTrainUpdater
- pulses - Variable in class mgui.neuro.updaters.PulseTrainUpdater
- PulseTrainUpdater - Class in mgui.models.updaters
- PulseTrainUpdater - Class in mgui.neuro.updaters
- PulseTrainUpdater() - Constructor for class mgui.models.updaters.PulseTrainUpdater
- PulseTrainUpdater() - Constructor for class mgui.neuro.updaters.PulseTrainUpdater
- PulseTrainUpdater(boolean, double) - Constructor for class mgui.models.updaters.PulseTrainUpdater
- PulseTrainUpdater(boolean, double) - Constructor for class mgui.neuro.updaters.PulseTrainUpdater
- PulseTrainUpdater.CurrentPulse - Class in mgui.models.updaters
- PulseTrainUpdater.CurrentPulse - Class in mgui.neuro.updaters
- push(InterfacePipeline) - Method in class mgui.pipelines.PipelineFork
- push(PipelineTask) - Method in class mgui.pipelines.InterfacePipeline
- put() - Method in class au.edu.unsw.cse.Mousedelta
- put() - Method in class au.edu.unsw.cse.Viewer
- put(int, int, int) - Method in class au.edu.unsw.cse.Mousedelta
- put(int, int, int) - Method in class au.edu.unsw.cse.Viewer
- put(int, Color) - Method in class au.edu.unsw.cse.Viewer
- put(Edge3d) - Method in class au.edu.unsw.cse.EdgeStack
- put(Point3d, Point3d) - Method in class au.edu.unsw.cse.EdgeStack
- put(Point3d, Point3d) - Method in class au.edu.unsw.cse.PointStack
- putFrameNo(int) - Method in class au.edu.unsw.cse.Mousedelta
- putFrameNo(int) - Method in class au.edu.unsw.cse.Viewer
-
this sets the frame no in the View
- putp(Edge3d) - Method in class au.edu.unsw.cse.EdgeStack
- putp(Point3d, Point3d) - Method in class au.edu.unsw.cse.EdgeStack
- putPROTO(String, String) - Method in class au.edu.unsw.cse.VRMLState
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