Serialized Form

Package au.edu.unsw.cse

Class au.edu.unsw.cse.AnimationWidget extends java.awt.Panel implements Serializable

Serialized Fields

auto
```
boolean auto
```
delay
```
int delay
```
engine
```
java.lang.Thread engine
```
first
```
java.awt.Button first
```
frameNo
```
int frameNo
```
last
```
java.awt.Button last
```
lastFrame
```
int lastFrame
```
next
```
java.awt.Button next
```
prev
```
java.awt.Button prev
```
scroll
```
java.awt.Scrollbar scroll
```
start
```
java.awt.Button start
```
stop
```
java.awt.Button stop
```
text
```
java.awt.TextField text
```
viewer
```
Viewer viewer
```

Class au.edu.unsw.cse.AnimationWidgetVRML extends AnimationWidget implements Serializable

Class au.edu.unsw.cse.Applet3d extends java.applet.Applet implements Serializable

Serialized Fields

modelChoice
```
java.awt.Choice modelChoice
```
parameters
```
java.util.Hashtable parameters
```
reset
```
java.awt.Button reset
```
transform
```
java.awt.Choice transform
```
transformValues
```
java.awt.TextField transformValues
```
viewer
```
Viewer viewer
```
windowValues
```
java.awt.TextField windowValues
```

Class au.edu.unsw.cse.AppletDepth extends Applet3d implements Serializable

Class au.edu.unsw.cse.AppletHull extends Applet3d implements Serializable

Serialized Fields

axes
```
Axes axes
```
dataChoice
```
java.awt.Choice dataChoice
```
dataChoice2d
```
java.awt.Choice dataChoice2d
```
dataChoice3d
```
java.awt.Choice dataChoice3d
```
dataSize
```
java.awt.TextField dataSize
```
dimensionChoice
```
java.awt.Choice dimensionChoice
```
mainPanel
```
java.awt.Panel mainPanel
```
modelChoice
```
java.awt.Choice modelChoice
```
moreButton
```
java.awt.Button moreButton
```
moreMessage
```
java.lang.String moreMessage
```
points
```
Point3dObject3d[] points
```
points3d
```
Points3d points3d
```

Class au.edu.unsw.cse.AppletPatch extends Applet3d implements Serializable
Class au.edu.unsw.cse.ColorControl extends java.awt.Checkbox implements Serializable
- Serialized Fields
  - c
    
    java.awt.Color c
  - i
    
    int i
  - id
    
    java.lang.String id
  - parent
    
    Viewer parent
  - tip
    
    java.lang.String tip
Class au.edu.unsw.cse.Paint3d extends java.awt.Canvas implements Serializable
- Serialized Fields
  - g
    
    java.awt.Graphics g
  - model
    
    Object3d model
  - offscreen
    
    java.awt.Image offscreen
  - viewer
    
    Viewer viewer

Class au.edu.unsw.cse.Viewer extends java.awt.Panel implements Serializable

Serialized Fields

animationWidget
```
AnimationWidget animationWidget
```
colcontrols
```
ColorControl[] colcontrols
```
engine
```
java.lang.Thread engine
```
extras
```
int[] extras
```
hash
```
java.util.Hashtable hash
```
home
```
View3dInfo home
```
lastsect
```
int lastsect
```
lastsecx
```
int lastsecx
```
lastsecy
```
int lastsecy
```
lastt
```
long lastt
```
lastx
```
int lastx
```
lasty
```
int lasty
```
lessButton
```
java.awt.Button lessButton
```
locked
```
boolean locked
```
model
```
Object3d model
```
moreButton
```
java.awt.Button moreButton
```
noColors
```
int noColors
```
noPanelsDisplayed
```
int noPanelsDisplayed
```
painter
```
Painter painter
```
panelPanel
```
java.awt.Panel panelPanel
```
parent
```
Applet3d parent
```
projectionChoice
```
java.awt.Choice projectionChoice
```
repaint
```
boolean repaint
```
set
```
java.awt.Button set
```
spinning
```
boolean spinning
```
spinx
```
double spinx
```
spiny
```
double spiny
```
timeget
```
long timeget
```
v
```
View3d v
```
viewPanel
```
java.awt.Panel viewPanel
```
views
```
java.lang.Object[][] views
```
visPanel
```
java.awt.Panel visPanel
```

Package mgui.collections
- Class mgui.collections.ReifiedArrayList extends java.util.ArrayList<E> implements Serializable
  - Serialized Fields
    
    generic_type
    
    java.lang.Class<?> generic_type
Package mgui.command
- Class mgui.command.CommandException extends java.lang.Exception implements Serializable
Package mgui.datasources
- Class mgui.datasources.DataFieldEvent extends java.util.EventObject implements Serializable
  - Serialized Fields
    
    event_code
    
    DataFieldEvent.EventCode event_code
- Class mgui.datasources.DataSourceException extends java.lang.Exception implements Serializable
Package mgui.geometry.mesh
- Class mgui.geometry.mesh.MeshFunctionException extends java.lang.Exception implements Serializable
Package mgui.geometry.neuro.mesh
- Class mgui.geometry.neuro.mesh.NeuroMeshFunctionsException extends java.lang.Exception implements Serializable
Package mgui.geometry.util
- Class mgui.geometry.util.NodeShapeComboRenderer extends InterfaceComboBoxRenderer implements Serializable
  - Serialized Fields
    
    colour
    
    java.awt.Color colour
Package mgui.graphs.networks
- Class mgui.graphs.networks.AbstractNetworkGraph extends DefaultGraph implements Serializable
- Class mgui.graphs.networks.NetworkGraphEvent extends java.util.EventObject implements Serializable

Package mgui.interfaces

Class mgui.interfaces.DisplayPanelEvent extends java.util.EventObject implements Serializable
- Serialized Fields
  - type
    
    DisplayPanelEvent.EventType type
Class mgui.interfaces.InterfaceButton extends javax.swing.JButton implements Serializable
- Serialized Fields
  - thisTool
    
    Tool2D thisTool
Class mgui.interfaces.InterfaceButtonPanel extends InterfacePanel implements Serializable
- Serialized Fields
  - targetPanel
    
    InterfaceDisplayPanel targetPanel
Class mgui.interfaces.InterfaceComboPanel extends InterfacePanel implements Serializable
- Serialized Fields
  - cmbPanels
    
    InterfaceComboBox cmbPanels
  - currentPanel
    
    InterfacePanel currentPanel
  - panels
    
    java.util.ArrayList<InterfacePanel> panels
  - scrollPane
    
    javax.swing.JScrollPane scrollPane

Class mgui.interfaces.InterfaceDialogBox extends javax.swing.JDialog implements Serializable

Serialized Fields

buttonPanel
```
javax.swing.JPanel buttonPanel
```
buttonType
```
int buttonType
```
cmdCancel
```
javax.swing.JButton cmdCancel
```
cmdOK
```
javax.swing.JButton cmdOK
```
mainLayout
```
java.awt.LayoutManager mainLayout
```
mainPanel
```
javax.swing.JPanel mainPanel
```
minButtonSize
```
int minButtonSize
```
minMainSize
```
int minMainSize
```
minWidth
```
int minWidth
```
parentPanel
```
InterfacePanel parentPanel
```
type
```
java.lang.String type
```
updater
```
InterfaceDialogUpdater updater
```
Deprecated.

Class mgui.interfaces.InterfaceDisplayPanel extends InterfacePanel implements Serializable

Serialized Fields

currentModel
```
ShapeModel3D currentModel
```
currentSelection
```
ShapeSelectionSet currentSelection
```
currentTool
```
Tool currentTool
```

displayPanelListeners

java.util.ArrayList<DisplayPanelListener> displayPanelListeners

excludeToSelection
```
boolean excludeToSelection
```

expanded_from_split_panel

InterfaceSplitPanel expanded_from_split_panel

expanded_from_split_ratio
```
double expanded_from_split_ratio
```
expanded_from_split_side
```
int expanded_from_split_side
```
expanded_window
```
InterfaceGraphicWindow expanded_window
```
isDestroyed
```
boolean isDestroyed
```
last_split_orientation
```
int last_split_orientation
```

mouse_listeners

java.util.TreeSet<GraphicMouseListener> mouse_listeners

objectTree
```
InterfaceTreePanel objectTree
```
parent_panel
```
InterfaceDisplayPanel parent_panel
```
parentFrame
```
InterfaceFrame parentFrame
```

selectionIndex

java.util.ArrayList<mgui.interfaces.InterfaceDisplayPanel.SelIDRef> selectionIndex

titles

java.util.ArrayList<javax.swing.JLabel> titles

toolLock
```
boolean toolLock
```

unexpanded_window

InterfaceGraphicWindow unexpanded_window

window
```
InterfaceGraphicWindow window
```
workspace
```
InterfaceWorkspace workspace
```

Class mgui.interfaces.InterfaceFrame extends javax.swing.JFrame implements Serializable
Class mgui.interfaces.InterfaceHideablePanel extends InterfacePanel implements Serializable
- Serialized Fields
  - isHidden
    
    boolean isHidden
  - thisPanel
    
    InterfacePanel thisPanel
  - thisTitle
    
    javax.swing.JLabel thisTitle
Class mgui.interfaces.InterfaceListPanel extends InterfacePanel implements Serializable
- Serialized Fields
  - thisList
    
    javax.swing.JList thisList
  - thisPane
    
    javax.swing.JScrollPane thisPane
Class mgui.interfaces.InterfaceOptionsDialogBox extends InterfaceDialogBox implements Serializable
- Serialized Fields
  - options
    
    InterfaceOptions options
Class mgui.interfaces.InterfaceOptionsTabbedDialogBox extends InterfaceOptionsDialogBox implements Serializable
- Serialized Fields
  - tabs
    
    javax.swing.JTabbedPane tabs
Class mgui.interfaces.InterfacePanel extends javax.swing.JPanel implements Serializable
- Serialized Fields
  - attributes
    
    AttributeList attributes
  - last_click_point
    
    java.awt.Point last_click_point
  - type
    
    java.lang.String type

Class mgui.interfaces.InterfaceSelectionPanel extends InterfacePanel implements Serializable

Serialized Fields

chkActionRecursive

javax.swing.JCheckBox chkActionRecursive

chkAttrOverride
```
javax.swing.JCheckBox chkAttrOverride
```
chkDisplayCenter
```
javax.swing.JCheckBox chkDisplayCenter
```
chkDisplayExcl
```
javax.swing.JCheckBox chkDisplayExcl
```
chkDisplayZoom
```
javax.swing.JCheckBox chkDisplayZoom
```
chkMouse2D
```
javax.swing.JCheckBox chkMouse2D
```
chkMouse3D
```
javax.swing.JCheckBox chkMouse3D
```
chkMouseAdd
```
javax.swing.JCheckBox chkMouseAdd
```
chkMouseBox
```
javax.swing.JCheckBox chkMouseBox
```
chkMouseClick
```
javax.swing.JCheckBox chkMouseClick
```
chkMouseRem
```
javax.swing.JCheckBox chkMouseRem
```
cmbActionSource
```
javax.swing.JComboBox cmbActionSource
```
cmbCurrentModel
```
javax.swing.JComboBox cmbCurrentModel
```
cmbCurrentSelSet
```
javax.swing.JComboBox cmbCurrentSelSet
```
cmdAttrSetAll
```
javax.swing.JButton cmdAttrSetAll
```
cmdCurrentSetAdd
```
javax.swing.JButton cmdCurrentSetAdd
```
cmdCurrentSetRem
```
javax.swing.JButton cmdCurrentSetRem
```
cmdMouseStartStop
```
javax.swing.JButton cmdMouseStartStop
```
cmdOpCopy
```
javax.swing.JButton cmdOpCopy
```
cmdOpIntersect
```
javax.swing.JButton cmdOpIntersect
```
cmdOpSubtract
```
javax.swing.JButton cmdOpSubtract
```
cmdOpUnion
```
javax.swing.JButton cmdOpUnion
```
cmdQueryContains
```
javax.swing.JButton cmdQueryContains
```
cmdQueryDisjoint
```
javax.swing.JButton cmdQueryDisjoint
```
current_model
```
ShapeModel3D current_model
```
current_query_tool
```
ToolQueryShape3D current_query_tool
```
current_select_tool
```
ToolSelectShape3D current_select_tool
```
current_set
```
ShapeSelectionSet current_set
```
lblActionOps
```
javax.swing.JLabel lblActionOps
```
lblActionQuery
```
javax.swing.JLabel lblActionQuery
```
lblActions
```
CategoryTitle lblActions
```
lblAttributes
```
CategoryTitle lblAttributes
```
lblCurrentModel
```
javax.swing.JLabel lblCurrentModel
```
lblCurrentSelSet
```
javax.swing.JLabel lblCurrentSelSet
```
lblCurrentSelSetName
```
javax.swing.JLabel lblCurrentSelSetName
```
lblDisplay
```
CategoryTitle lblDisplay
```
lblMouse
```
CategoryTitle lblMouse
```
lblSelection
```
CategoryTitle lblSelection
```
lblSelShapes
```
javax.swing.JLabel lblSelShapes
```
lstActionSets
```
javax.swing.JList lstActionSets
```
lstAttributes
```
InterfaceAttributePanel lstAttributes
```
lstSelShapes
```
javax.swing.JList lstSelShapes
```

modActionSets

javax.swing.DefaultListModel modActionSets

modSelShapes

javax.swing.DefaultListModel modSelShapes

previousTool2D
```
Tool2D previousTool2D
```
previousTool3D
```
Tool3D previousTool3D
```
scrActionSets
```
javax.swing.JScrollPane scrActionSets
```
scrSelShapes
```
javax.swing.JScrollPane scrSelShapes
```

txtCurrentSelSetName

javax.swing.JTextField txtCurrentSelSetName

Class mgui.interfaces.InterfaceSplitPanel extends InterfaceGraphicWindow implements Serializable

Serialized Fields

listeners

java.util.ArrayList<SplitPanelListener> listeners

panel1
```
InterfaceGraphicWindow panel1
```
panel2
```
InterfaceGraphicWindow panel2
```
split_orientation
```
int split_orientation
```
split_pane
```
javax.swing.JSplitPane split_pane
```

Class mgui.interfaces.InterfaceStatusBarPanel extends InterfacePanel implements Serializable
- Serialized Fields
  - boxes
    
    java.util.ArrayList<InterfaceTextBox> boxes
Class mgui.interfaces.InterfaceTabbedDialogBox extends InterfaceDialogBox implements Serializable
- Serialized Fields
  - tabs
    
    javax.swing.JTabbedPane tabs

Class mgui.interfaces.InterfaceTabbedDisplayPanel extends InterfaceDisplayPanel implements Serializable

Serialized Fields

default_tab
```
java.lang.String default_tab
```

tab_listeners

java.util.ArrayList<TabbedDisplayListener> tab_listeners

tabbed_pane
```
javax.swing.JTabbedPane tabbed_pane
```

tabbed_panels

java.util.HashMap<java.lang.String,InterfaceDisplayPanel> tabbed_panels

update_name
```
boolean update_name
```

Class mgui.interfaces.InterfaceTextBox extends javax.swing.JLabel implements Serializable
Class mgui.interfaces.SplitPanelEvent extends java.util.EventObject implements Serializable
- Serialized Fields
  - type
    
    SplitPanelEvent.EventType type
Class mgui.interfaces.TabbedDisplayEvent extends java.util.EventObject implements Serializable
- Serialized Fields
  - type
    
    TabbedDisplayEvent.EventType type

Package mgui.interfaces.attributes
- Class mgui.interfaces.attributes.AttributeComparator extends java.lang.Object implements Serializable
- Class mgui.interfaces.attributes.AttributeDialogBox extends InterfaceDialogBox implements Serializable
  - Serialized Fields
    
    attributes_table
    
    InterfaceAttributeTable attributes_table
    
    cmbObject
    
    InterfaceComboBox cmbObject
    
    current_object
    
    AttributeObject current_object
    
    is_init
    
    boolean is_init
    
    list_class
    
    java.lang.Class<?> list_class
    
    lstAttributes
    
    javax.swing.JScrollPane lstAttributes
    
    updateCombo
    
    boolean updateCombo
- Class mgui.interfaces.attributes.AttributeEvent extends java.util.EventObject implements Serializable
- Class mgui.interfaces.attributes.AttributeException extends java.lang.Exception implements Serializable
- Class mgui.interfaces.attributes.InterfaceAttributePanel extends InterfacePanel implements Serializable
  - Serialized Fields
    
    attrModel
    
    AttributeTableModel attrModel
    
    attrTable
    
    InterfaceAttributeTable attrTable
    
    colourDlg
    
    javax.swing.JColorChooser colourDlg
    
    scrollPane
    
    javax.swing.JScrollPane scrollPane
Package mgui.interfaces.attributes.table
- Class mgui.interfaces.attributes.table.AttributeCellEditor extends javax.swing.AbstractCellEditor implements Serializable
  - Serialized Fields
    
    booleanBox
    
    javax.swing.JCheckBox booleanBox
    
    cmbType
    
    javax.swing.JComboBox cmbType
    
    colourButton
    
    ColourButton colourButton
    
    colourChooser
    
    javax.swing.JColorChooser colourChooser
    
    current_obj
    
    java.lang.Object current_obj
    
    currentBool
    
    MguiBoolean currentBool
    
    currentColour
    
    java.awt.Color currentColour
    
    currentSel
    
    AttributeSelection<?> currentSel
    
    currentStroke
    
    java.awt.BasicStroke currentStroke
    
    currentText
    
    java.lang.String currentText
    
    currentType
    
    TypeMap currentType
    
    currentValue
    
    Attribute<?> currentValue
    
    matrixButton
    
    AttributeButton matrixButton
    
    strokeSample
    
    StrokeSample strokeSample
    
    styleDialog
    
    LineStyleDialog styleDialog
    
    valueBox
    
    javax.swing.JTextField valueBox
- Class mgui.interfaces.attributes.table.AttributeTableModel extends javax.swing.table.AbstractTableModel implements Serializable
  - Serialized Fields
    
    attributes
    
    AttributeList attributes
    
    isEditable
    
    boolean isEditable
- Class mgui.interfaces.attributes.table.InterfaceAttributeTable extends javax.swing.JTable implements Serializable
  - Serialized Fields
    
    editor
    
    AttributeCellEditor editor
    
    model
    
    AttributeTableModel model
    
    parentPanel
    
    InterfaceAttributePanel parentPanel
    
    renderer
    
    AttributeCellRenderer renderer
Package mgui.interfaces.attributes.tree
- Class mgui.interfaces.attributes.tree.AttributeButton extends javax.swing.JButton implements Serializable
  - Serialized Fields
    
    sourceAttr
    
    Attribute sourceAttr
- Class mgui.interfaces.attributes.tree.AttributeTreeCellEditor extends javax.swing.AbstractCellEditor implements Serializable
  - Serialized Fields
    
    booleanBox
    
    javax.swing.JCheckBox booleanBox
    
    cmbInterface
    
    InterfaceComboBox cmbInterface
    
    cmbOption
    
    InterfaceComboBox cmbOption
    
    cmbType
    
    InterfaceComboBox cmbType
    
    CMD_CHANGE_BOOL
    
    java.lang.String CMD_CHANGE_BOOL
    
    CMD_CHANGE_COLOUR
    
    java.lang.String CMD_CHANGE_COLOUR
    
    CMD_CHANGE_STROKE
    
    java.lang.String CMD_CHANGE_STROKE
    
    CMD_CHANGE_TEXT
    
    java.lang.String CMD_CHANGE_TEXT
    
    CMD_CHANGE_TYPE
    
    java.lang.String CMD_CHANGE_TYPE
    
    colourButton
    
    ColourButton colourButton
    
    colourChooser
    
    javax.swing.JColorChooser colourChooser
    
    currentBool
    
    MguiBoolean currentBool
    
    currentColour
    
    java.awt.Color currentColour
    
    currentFont
    
    java.awt.Font currentFont
    
    currentStroke
    
    java.awt.BasicStroke currentStroke
    
    currentText
    
    java.lang.String currentText
    
    currentType
    
    TypeMap currentType
    
    currentValue
    
    Attribute currentValue
    
    editorComponent
    
    java.awt.Component editorComponent
    
    file_button
    
    FileButton file_button
    
    fontButton
    
    AttributeButton fontButton
    
    fontChooser
    
    FontDialog fontChooser
    
    selectedBG
    
    java.awt.Color selectedBG
    
    strokeSample
    
    StrokeSample strokeSample
    
    updateItem
    
    boolean updateItem
    
    valueBox
    
    javax.swing.JTextField valueBox
- Class mgui.interfaces.attributes.tree.AttributeTreeCellRenderer extends javax.swing.tree.DefaultTreeCellRenderer implements Serializable
  - Serialized Fields
    
    selectedBG
    
    java.awt.Color selectedBG
- Class mgui.interfaces.attributes.tree.AttributeTreeNode extends InterfaceTreeNode implements Serializable
- Class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer extends javax.swing.JLabel implements Serializable
  - Serialized Fields
    
    backgroundNonSelectionColor
    
    java.awt.Color backgroundNonSelectionColor
    
    Color to use for the background when the node isn't selected.
    
    backgroundSelectionColor
    
    java.awt.Color backgroundSelectionColor
    
    Color to use for the background when a node is selected.
    
    borderSelectionColor
    
    java.awt.Color borderSelectionColor
    
    Color to use for the focus indicator when the node has focus.
    
    drawDashedFocusIndicator
    
    boolean drawDashedFocusIndicator
    
    If true, a dashed line is drawn as the focus indicator.
    
    drawsFocusBorderAroundIcon
    
    boolean drawsFocusBorderAroundIcon
    
    True if draws focus border around icon as well.
    
    focusBGColor
    
    java.awt.Color focusBGColor
    
    Color to draw the focus indicator in, determined from the background. color.
    
    hasFocus
    
    boolean hasFocus
    
    True if has focus.
    
    isDropCell
    
    boolean isDropCell
    
    selected
    
    boolean selected
    
    Is the value currently selected.
    
    textNonSelectionColor
    
    java.awt.Color textNonSelectionColor
    
    Color to use for the foreground for non-selected nodes.
    
    textSelectionColor
    
    java.awt.Color textSelectionColor
    
    Color to use for the foreground for selected nodes.
    
    tree
    
    javax.swing.JTree tree
    
    Last tree the renderer was painted in.
    
    treeBGColor
    
    java.awt.Color treeBGColor
    
    Background color of the tree.

Package mgui.interfaces.attributes.video

Class mgui.interfaces.attributes.video.AttributeObjectVideoTaskDialogPanel extends VideoTaskDialogPanel implements Serializable

Serialized Fields

chkBooleanValue
```
javax.swing.JCheckBox chkBooleanValue
```
chkEndValue
```
javax.swing.JCheckBox chkEndValue
```
cmbAttribute
```
InterfaceComboBox cmbAttribute
```
cmbShape
```
InterfaceComboBox cmbShape
```
handleCombo
```
boolean handleCombo
```
lblAttribute
```
javax.swing.JLabel lblAttribute
```
lblShape
```
javax.swing.JLabel lblShape
```
lblStartValue
```
javax.swing.JLabel lblStartValue
```
lblStep
```
javax.swing.JLabel lblStep
```
task
```
AttributeObjectVideoTask task
```
txtEndValue
```
javax.swing.JTextField txtEndValue
```
txtStartValue
```
javax.swing.JTextField txtStartValue
```
txtStep
```
javax.swing.JTextField txtStep
```
value_component
```
javax.swing.JComponent value_component
```
value_constraints
```
LineLayoutConstraints value_constraints
```

Package mgui.interfaces.cocomac
- Class mgui.interfaces.cocomac.InterfaceCoCoMacPanel extends InterfacePanel implements Serializable
  - Serialized Fields
    
    lblDatabase
    
    CategoryTitle lblDatabase
    
    lblNetworks
    
    CategoryTitle lblNetworks

Package mgui.interfaces.console

Class mgui.interfaces.console.InterfaceConsoleDisplay extends InterfaceGraphic<Tool> implements Serializable

Serialized Fields

adapter

mgui.interfaces.console.InterfaceConsoleDisplay.ConsoleAdapter adapter

error_input_stream

java.io.PipedInputStream error_input_stream

error_output_stream

java.io.PipedOutputStream error_output_stream

error_reader
```
java.lang.Thread error_reader
```
input_reader
```
java.lang.Thread input_reader
```
input_stream
```
java.io.PipedInputStream input_stream
```
output_stream
```
java.io.PipedOutputStream output_stream
```
scrConsole
```
javax.swing.JScrollPane scrConsole
```

txtConsole

mgui.interfaces.console.InterfaceConsoleDisplay.ConsolePane txtConsole

Package mgui.interfaces.datasources

Class mgui.interfaces.datasources.DataFieldTreeNode extends InterfaceTreeNode implements Serializable
Class mgui.interfaces.datasources.DataSetTreeNode extends javax.swing.tree.DefaultMutableTreeNode implements Serializable

Class mgui.interfaces.datasources.DataSourceDialogBox extends InterfaceOptionsDialogBox implements Serializable

Serialized Fields

blnUpdate
```
boolean blnUpdate
```
checked
```
java.lang.String checked
```
chkLocal
```
javax.swing.JCheckBox chkLocal
```
chkNew
```
javax.swing.JCheckBox chkNew
```
cmbDriver
```
javax.swing.JComboBox cmbDriver
```
dbPanel
```
DataSourceDialogPanel dbPanel
```
is_encrypted
```
boolean is_encrypted
```
lblDriver
```
javax.swing.JLabel lblDriver
```
lblLogin
```
javax.swing.JLabel lblLogin
```
lblNewDataSource
```
javax.swing.JLabel lblNewDataSource
```
lblPassword
```
javax.swing.JLabel lblPassword
```
lineLayout
```
LineLayout lineLayout
```

newDataSourcePanel

DataSourceDialogPanel newDataSourcePanel

temp_source
```
DataSource temp_source
```
txtLogin
```
javax.swing.JTextField txtLogin
```
txtNewDataSource
```
javax.swing.JTextField txtNewDataSource
```
txtPassword
```
javax.swing.JPasswordField txtPassword
```

Class mgui.interfaces.datasources.DataSourceDialogPanel extends javax.swing.JPanel implements Serializable
- Serialized Fields
  - height
    
    int height
  - lblURL
    
    javax.swing.JLabel lblURL
  - txtURL
    
    javax.swing.JTextField txtURL

Class mgui.interfaces.datasources.DataSourceDriverDialogBox extends InterfaceOptionsDialogBox implements Serializable

Serialized Fields

attr_table
```
javax.swing.JTable attr_table
```
attr_table_model
```
AttributeTableModel attr_table_model
```
cmbDriver
```
javax.swing.JComboBox cmbDriver
```
cmdAddNew
```
javax.swing.JButton cmdAddNew
```
cmdDelete
```
javax.swing.JButton cmdDelete
```
cmdRefresh
```
javax.swing.JButton cmdRefresh
```
cmdRemove
```
javax.swing.JButton cmdRemove
```
cmdRevert
```
javax.swing.JButton cmdRevert
```
cmdSave
```
javax.swing.JButton cmdSave
```
cmdUpdate
```
javax.swing.JButton cmdUpdate
```

dialog_class

java.lang.Class<? extends DataSourceDialogPanel> dialog_class

is_encrypted
```
boolean is_encrypted
```
lblAttributes
```
javax.swing.JLabel lblAttributes
```
lblClass
```
javax.swing.JLabel lblClass
```
lblDriver
```
javax.swing.JLabel lblDriver
```
lblLogin
```
javax.swing.JLabel lblLogin
```
lblName
```
javax.swing.JLabel lblName
```
lblPassword
```
javax.swing.JLabel lblPassword
```
lblUrl
```
javax.swing.JLabel lblUrl
```
new_driver
```
DataSourceDriver new_driver
```
scrAttributes
```
javax.swing.JScrollPane scrAttributes
```
txtClass
```
javax.swing.JTextField txtClass
```
txtLogin
```
javax.swing.JTextField txtLogin
```
txtName
```
javax.swing.JTextField txtName
```
txtPassword
```
javax.swing.JPasswordField txtPassword
```
txtUrl
```
javax.swing.JTextField txtUrl
```

Class mgui.interfaces.datasources.DataSourceListDialogPanel extends DataSourceDialogPanel implements Serializable

Serialized Fields

attr_table
```
javax.swing.JTable attr_table
```
attr_table_model
```
AttributeTableModel attr_table_model
```
driver
```
DataSourceDriver driver
```
is_init
```
boolean is_init
```
lblAttributes
```
javax.swing.JLabel lblAttributes
```
lblSources
```
javax.swing.JLabel lblSources
```
lstSources
```
javax.swing.JScrollPane lstSources
```

model

javax.swing.table.DefaultTableModel model

scrAttributes
```
javax.swing.JScrollPane scrAttributes
```
sourceList
```
javax.swing.JTable sourceList
```

Class mgui.interfaces.datasources.DataTableDialog extends InterfaceDialogBox implements Serializable

Class mgui.interfaces.datasources.DataTableModel extends InterfaceTableModel implements Serializable

Serialized Fields

cache

java.util.ArrayList<java.util.ArrayList<java.lang.Object>> cache

ds_item
```
DataSourceItem ds_item
```

filter

java.util.ArrayList<java.lang.Integer> filter

is_cached
```
boolean is_cached
```
is_new_record
```
boolean is_new_record
```
is_thread_caching
```
boolean is_thread_caching
```
isFiltered
```
boolean isFiltered
```
progress_updater
```
ProgressUpdater progress_updater
```
recordSet
```
DataRecordSet recordSet
```

Class mgui.interfaces.datasources.EditDataFieldDialogBox extends InterfaceOptionsDialogBox implements Serializable

Serialized Fields

chkIsKey
```
javax.swing.JCheckBox chkIsKey
```
chkIsRequired
```
javax.swing.JCheckBox chkIsRequired
```
chkIsUnique
```
javax.swing.JCheckBox chkIsUnique
```
cmbDataType
```
InterfaceComboBox cmbDataType
```
data_field
```
DataField data_field
```
lblDataType
```
javax.swing.JLabel lblDataType
```
lblLength
```
javax.swing.JLabel lblLength
```
lblName
```
javax.swing.JLabel lblName
```
txtLength
```
javax.swing.JTextField txtLength
```
txtName
```
javax.swing.JTextField txtName
```

Class mgui.interfaces.datasources.EditDataTableDialog extends InterfaceOptionsDialogBox implements Serializable

Serialized Fields

changed_names

java.util.HashMap<java.lang.String,java.lang.String> changed_names

cmdAddField
```
javax.swing.JButton cmdAddField
```
cmdRemField
```
javax.swing.JButton cmdRemField
```
data_table
```
DataTable data_table
```
exception
```
boolean exception
```

fields_model

mgui.interfaces.datasources.EditDataTableDialog.FieldsTableModel fields_model

fields_table
```
javax.swing.JTable fields_table
```
is_edit
```
boolean is_edit
```
lblFields
```
javax.swing.JLabel lblFields
```
lblName
```
javax.swing.JLabel lblName
```
scrFields
```
javax.swing.JScrollPane scrFields
```
txtName
```
javax.swing.JTextField txtName
```

Class mgui.interfaces.datasources.EditQueryDialogBox extends InterfaceOptionsDialogBox implements Serializable
- Serialized Fields
  - lblName
    
    javax.swing.JLabel lblName
  - query_changed
    
    boolean query_changed
  - txtName
    
    javax.swing.JTextField txtName
  - txtSQL
    
    javax.swing.JTextArea txtSQL

Class mgui.interfaces.datasources.InterfaceDatasourcePanel extends InterfacePanel implements Serializable

Serialized Fields

cmbQueriesShow
```
InterfaceComboBox cmbQueriesShow
```
cmbSourcesCurrent
```
InterfaceComboBox cmbSourcesCurrent
```
cmbTablesShow
```
InterfaceComboBox cmbTablesShow
```

cmdAdminDefineDrivers

javax.swing.JButton cmdAdminDefineDrivers

cmdFieldsAddNew
```
javax.swing.JButton cmdFieldsAddNew
```
cmdFieldsEdit
```
javax.swing.JButton cmdFieldsEdit
```
cmdFieldsRemove
```
javax.swing.JButton cmdFieldsRemove
```
cmdIOExportData
```
javax.swing.JButton cmdIOExportData
```
cmdIOImportData
```
javax.swing.JButton cmdIOImportData
```
cmdQueriesAddNew
```
javax.swing.JButton cmdQueriesAddNew
```
cmdQueriesEdit
```
javax.swing.JButton cmdQueriesEdit
```
cmdQueriesExecute
```
javax.swing.JButton cmdQueriesExecute
```
cmdQueriesRemove
```
javax.swing.JButton cmdQueriesRemove
```
cmdQueriesShow
```
javax.swing.JButton cmdQueriesShow
```
cmdSourcesConnect
```
javax.swing.JButton cmdSourcesConnect
```

cmdSourcesCreateUpdate

javax.swing.JButton cmdSourcesCreateUpdate

cmdSourcesDefineEdit

javax.swing.JButton cmdSourcesDefineEdit

cmdSourcesDrop
```
javax.swing.JButton cmdSourcesDrop
```
cmdSourcesLoad
```
javax.swing.JButton cmdSourcesLoad
```
cmdSourcesRefresh
```
javax.swing.JButton cmdSourcesRefresh
```
cmdSourcesRemove
```
javax.swing.JButton cmdSourcesRemove
```
cmdSourcesSave
```
javax.swing.JButton cmdSourcesSave
```
cmdTablesAddNew
```
javax.swing.JButton cmdTablesAddNew
```
cmdTablesEdit
```
javax.swing.JButton cmdTablesEdit
```
cmdTablesRemove
```
javax.swing.JButton cmdTablesRemove
```
cmdTablesShow
```
javax.swing.JButton cmdTablesShow
```
current_field
```
DataField current_field
```
current_query
```
DataQuery current_query
```
current_source
```
DataSource current_source
```
LOCAL

current_source_options

DataSourceOptions current_source_options

current_table
```
DataTable current_table
```

data_fields_model

mgui.interfaces.datasources.InterfaceDatasourcePanel.FieldListModel data_fields_model

data_tables_model

mgui.interfaces.datasources.InterfaceDatasourcePanel.TableListModel data_tables_model

doUpdate
```
boolean doUpdate
```
lblAdmin
```
CategoryTitle lblAdmin
```
ADMIN
lblFields
```
CategoryTitle lblFields
```
FIELDS
lblIO
```
CategoryTitle lblIO
```
I/O
lblQueries
```
CategoryTitle lblQueries
```
QUERIES
lblQueriesShow
```
javax.swing.JLabel lblQueriesShow
```
lblSources
```
CategoryTitle lblSources
```
SOURCES
lblSourcesCurrent
```
javax.swing.JLabel lblSourcesCurrent
```
lblTables
```
CategoryTitle lblTables
```
TABLES
lblTablesShow
```
javax.swing.JLabel lblTablesShow
```
queries_list
```
javax.swing.JList queries_list
```

queries_list_model

javax.swing.DefaultListModel queries_list_model

scrFields
```
javax.swing.JScrollPane scrFields
```
scrQueries
```
javax.swing.JScrollPane scrQueries
```
scrTables
```
javax.swing.JScrollPane scrTables
```
tblFields
```
javax.swing.JTable tblFields
```
tblTables
```
javax.swing.JTable tblTables
```
txtQuerySQL
```
javax.swing.JTextArea txtQuerySQL
```

Package mgui.interfaces.datasources.tinysql
- Class mgui.interfaces.datasources.tinysql.TinySQLDialogPanel extends DataSourceDialogPanel implements Serializable
  - Serialized Fields
    
    driver
    
    DataSourceDriver driver
Package mgui.interfaces.events
- Class mgui.interfaces.events.CameraEvent extends java.util.EventObject implements Serializable
  - Serialized Fields
    
    type
    
    CameraEvent.EventType type
- Class mgui.interfaces.events.DataSourceEvent extends java.util.EventObject implements Serializable
- Class mgui.interfaces.events.DialogActionEvent extends java.awt.event.ActionEvent implements Serializable
Package mgui.interfaces.frames
- Class mgui.interfaces.frames.SessionFrame extends InterfaceFrame implements Serializable
  - Serialized Fields
    
    currentTool
    
    Tool2D currentTool
    
    splitPane
    
    javax.swing.JSplitPane splitPane

Package mgui.interfaces.graphics

Class mgui.interfaces.graphics.CanvasEvent extends java.util.EventObject implements Serializable
Class mgui.interfaces.graphics.GraphicEvent extends java.util.EventObject implements Serializable
- Serialized Fields
  - type
    
    GraphicEvent.EventType type

Class mgui.interfaces.graphics.InterfaceCanvas3D extends javax.swing.JPanel implements Serializable

Serialized Fields

canvas3D
```
org.jogamp.java3d.Canvas3D canvas3D
```

cListener

mgui.interfaces.graphics.InterfaceCanvas3D.CanvasMouseListener cListener

graphic3D
```
InterfaceGraphic3D graphic3D
```
has_been_dragged
```
boolean has_been_dragged
```

mouseListeners

java.util.ArrayList<java.awt.event.MouseListener> mouseListeners

mouseMotionListeners

java.util.ArrayList<java.awt.event.MouseMotionListener> mouseMotionListeners

mouseWheelListeners

java.util.ArrayList<java.awt.event.MouseWheelListener> mouseWheelListeners

Class mgui.interfaces.graphics.InterfaceGraphic extends InterfacePanel implements Serializable

Serialized Fields

excludeToSelection
```
boolean excludeToSelection
```

graphic_listeners

java.util.ArrayList<InterfaceGraphicListener> graphic_listeners

init_once
```
boolean init_once
```
is_snapshot
```
boolean is_snapshot
```
last_screen_shot_file
```
java.io.File last_screen_shot_file
```
popup_length
```
int popup_length
```

post_render_tasks

java.util.HashMap<java.lang.String,java.lang.Object> post_render_tasks

status_listeners

java.util.ArrayList<GraphicMouseListener> status_listeners

status_map

java.util.HashMap<GraphicMouseListener,java.lang.Integer> status_map

theMap
```
Map theMap
```
title_panel
```
InterfaceGraphicWindow title_panel
```
toolInputAdapter
```
ToolInputAdapter toolInputAdapter
```

Class mgui.interfaces.graphics.InterfaceGraphic2D extends InterfaceGraphic<Tool2D> implements Serializable

Serialized Fields

childSets

java.util.ArrayList<ShapeSet2DInt> childSets

clip_planes

java.util.ArrayList<ClipPlane> clip_planes

currentSections
```
SectionSet3DInt currentSections
```
currentSelection
```
ShapeSelectionSet currentSelection
```
currentTool
```
Tool2D currentTool
```
defaultTool
```
Tool2D defaultTool
```
drawEngine
```
DrawingEngine drawEngine
```
drawMouseOnly
```
boolean drawMouseOnly
```

graphicListeners

java.util.ArrayList<InterfaceGraphicListener> graphicListeners

grids

java.util.ArrayList<Graphic2DGrid> grids

isDestroyed
```
boolean isDestroyed
```
mouseCoords
```
java.awt.Point mouseCoords
```

propertyChange

java.beans.PropertyChangeSupport propertyChange

shape3DObjects
```
ShapeSet2DInt shape3DObjects
```

shapeList

java.util.ArrayList<Shape2DInt> shapeList

temp_shapes

java.util.ArrayList<Shape2DInt> temp_shapes

Class mgui.interfaces.graphics.InterfaceGraphic2DTextBox extends InterfaceTextBox implements Serializable

Serialized Fields

interfaceType
```
int interfaceType
```

mouseAdapter

mgui.interfaces.graphics.InterfaceGraphic2DTextBox.TextMouseListener mouseAdapter

propertyAdapter

mgui.interfaces.graphics.InterfaceGraphic2DTextBox.TextPropertyListener propertyAdapter

theMap
```
Map2D theMap
```
thisRef
```
InterfaceGraphic2DTextBox thisRef
```

Class mgui.interfaces.graphics.InterfaceGraphic3D extends InterfaceGraphic<Tool3D> implements Serializable

Serialized Fields

ambientLight

org.jogamp.java3d.AmbientLight ambientLight

axes
```
Axes3D axes
```

axes_transform

org.jogamp.java3d.TransformGroup axes_transform

background
```
org.jogamp.java3d.Background background
```
canvas3D
```
InterfaceCanvas3D canvas3D
```
currentScene
```
ShapeSceneNode currentScene
```
currentSelection
```
ShapeSelectionSet currentSelection
```
currentSet
```
ShapeSet3DInt currentSet
```
currentTool
```
Tool3D currentTool
```
defaultTool
```
Tool3D defaultTool
```
lightNode
```
org.jogamp.java3d.BranchGroup lightNode
```

lights

java.util.ArrayList<org.jogamp.java3d.DirectionalLight> lights

lightSource

org.jogamp.java3d.DirectionalLight lightSource

M3_temp
```
org.jogamp.vecmath.Matrix3d M3_temp
```
min_screen_dim
```
float min_screen_dim
```
model
```
ShapeModel3D model
```

pickCanvasGeom

org.jogamp.java3d.utils.pickfast.PickCanvas pickCanvasGeom

pickCanvasNode

org.jogamp.java3d.utils.pickfast.PickCanvas pickCanvasNode

R_temp
```
org.jogamp.java3d.Transform3D R_temp
```
R_temp2
```
org.jogamp.java3d.Transform3D R_temp2
```
resize_timer
```
javax.swing.Timer resize_timer
```

temp_popup_shape

org.jogamp.java3d.BranchGroup temp_popup_shape

tempBounds

org.jogamp.java3d.BoundingSphere tempBounds

toolInput3DAdapter

ToolBehavior3DAdapter toolInput3DAdapter

viewer

org.jogamp.java3d.utils.universe.Viewer viewer

viewingPlatform

org.jogamp.java3d.utils.universe.ViewingPlatform viewingPlatform

Class mgui.interfaces.graphics.InterfaceGraphicPanel extends InterfacePanel implements Serializable

Serialized Fields

chkVideo3DLoop
```
javax.swing.JCheckBox chkVideo3DLoop
```
chkViews3DNamed
```
javax.swing.JCheckBox chkViews3DNamed
```
chkViews3DSetAll
```
javax.swing.JCheckBox chkViews3DSetAll
```

chkViews3DSetImmediate

javax.swing.JCheckBox chkViews3DSetImmediate

chkViews3DSetSelected

javax.swing.JCheckBox chkViews3DSetSelected

chkViews3DTarget
```
javax.swing.JCheckBox chkViews3DTarget
```
chkViews3DWindow
```
javax.swing.JCheckBox chkViews3DWindow
```
chkViews3DZoom
```
javax.swing.JCheckBox chkViews3DZoom
```
CMB_SOURCE_WIN
```
java.lang.String CMB_SOURCE_WIN
```
cmbSourceWindow
```
InterfaceComboBox cmbSourceWindow
```

cmbVideo3DOutputFormat

javax.swing.JComboBox cmbVideo3DOutputFormat

cmbVideo3DVideo
```
javax.swing.JComboBox cmbVideo3DVideo
```
cmbVideo3DWindow
```
InterfaceComboBox cmbVideo3DWindow
```
cmbViews3DNamed
```
InterfaceComboBox cmbViews3DNamed
```
cmbViews3DWindow
```
InterfaceComboBox cmbViews3DWindow
```
CMD_ADD_WIN
```
java.lang.String CMD_ADD_WIN
```
CMD_APPLY_WIN
```
java.lang.String CMD_APPLY_WIN
```
CMD_DOWN_WIN
```
java.lang.String CMD_DOWN_WIN
```
CMD_REF_SOURCE
```
java.lang.String CMD_REF_SOURCE
```
CMD_REM_WIN
```
java.lang.String CMD_REM_WIN
```
CMD_SET_SOURCE
```
java.lang.String CMD_SET_SOURCE
```
CMD_UP_WIN
```
java.lang.String CMD_UP_WIN
```
cmdAddWindow
```
javax.swing.JButton cmdAddWindow
```
cmdApplyWindows
```
javax.swing.JButton cmdApplyWindows
```
cmdMoveDown
```
javax.swing.JButton cmdMoveDown
```
cmdMoveUp
```
javax.swing.JButton cmdMoveUp
```
cmdRefreshSource
```
javax.swing.JButton cmdRefreshSource
```

cmdRefreshSourceList

javax.swing.JButton cmdRefreshSourceList

cmdRemoveWindow
```
javax.swing.JButton cmdRemoveWindow
```
cmdResetWindows
```
javax.swing.JButton cmdResetWindows
```
cmdSetSource
```
javax.swing.JButton cmdSetSource
```
cmdSetWindowSource
```
javax.swing.JButton cmdSetWindowSource
```
cmdVideo3DDelete
```
javax.swing.JButton cmdVideo3DDelete
```
cmdVideo3DEditTask
```
javax.swing.JButton cmdVideo3DEditTask
```
cmdVideo3DEnd
```
javax.swing.JButton cmdVideo3DEnd
```
cmdVideo3DForward
```
javax.swing.JButton cmdVideo3DForward
```
cmdVideo3DLoad
```
javax.swing.JButton cmdVideo3DLoad
```
cmdVideo3DNew
```
javax.swing.JButton cmdVideo3DNew
```
cmdVideo3DNewTask
```
javax.swing.JButton cmdVideo3DNewTask
```

cmdVideo3DOffsetTask

javax.swing.JButton cmdVideo3DOffsetTask

cmdVideo3DOutput
```
javax.swing.JButton cmdVideo3DOutput
```

cmdVideo3DOutputFile

javax.swing.JButton cmdVideo3DOutputFile

cmdVideo3DOutputOptions

javax.swing.JButton cmdVideo3DOutputOptions

cmdVideo3DRemoveTask

javax.swing.JButton cmdVideo3DRemoveTask

cmdVideo3DReverse
```
javax.swing.JButton cmdVideo3DReverse
```
cmdVideo3DSave
```
javax.swing.JButton cmdVideo3DSave
```
cmdVideo3DStart
```
javax.swing.JButton cmdVideo3DStart
```
cmdVideo3DStop
```
javax.swing.JButton cmdVideo3DStop
```
cmdVideo3DUpdate
```
javax.swing.JButton cmdVideo3DUpdate
```
cmdViews3DDelete
```
javax.swing.JButton cmdViews3DDelete
```
cmdViews3DLOS_flip
```
javax.swing.JButton cmdViews3DLOS_flip
```
cmdViews3DSave
```
javax.swing.JButton cmdViews3DSave
```
cmdViews3DSet
```
javax.swing.JButton cmdViews3DSet
```

cmdViews3DTranslation_zero

javax.swing.JButton cmdViews3DTranslation_zero

cmdViews3DUp_flip
```
javax.swing.JButton cmdViews3DUp_flip
```
currentSourceWindow
```
InterfacePanel currentSourceWindow
```
currentVideo3D
```
Video3D currentVideo3D
```
currentView
```
View3D currentView
```

displayNodes

java.util.ArrayList<javax.swing.tree.DefaultMutableTreeNode> displayNodes

doUpdate
```
boolean doUpdate
```

graphic_transformer

org.apache.commons.collections15.Transformer<java.lang.Object,java.lang.String> graphic_transformer

handleCombo
```
boolean handleCombo
```
lblOrder
```
javax.swing.JLabel lblOrder
```
lblSources
```
CategoryTitle lblSources
```
lblSourceTree
```
javax.swing.JLabel lblSourceTree
```
lblSourceWindow
```
javax.swing.JLabel lblSourceWindow
```
lblVideo3D
```
CategoryTitle lblVideo3D
```
lblVideo3DClock
```
javax.swing.JLabel lblVideo3DClock
```
lblVideo3DControls
```
javax.swing.JLabel lblVideo3DControls
```
lblVideo3DDuration
```
javax.swing.JLabel lblVideo3DDuration
```
lblVideo3DName
```
javax.swing.JLabel lblVideo3DName
```
lblVideo3DOutput
```
javax.swing.JLabel lblVideo3DOutput
```
lblVideo3DOutputFile
```
javax.swing.JLabel lblVideo3DOutputFile
```

lblVideo3DOutputFormat

javax.swing.JLabel lblVideo3DOutputFormat

lblVideo3DRefresh
```
javax.swing.JLabel lblVideo3DRefresh
```
lblVideo3DTask
```
javax.swing.JLabel lblVideo3DTask
```
lblVideo3DVideo
```
javax.swing.JLabel lblVideo3DVideo
```
lblVideo3DWindow
```
javax.swing.JLabel lblVideo3DWindow
```
lblViews3D
```
CategoryTitle lblViews3D
```
lblViews3DLOS
```
javax.swing.JLabel lblViews3DLOS
```
lblViews3DName
```
javax.swing.JLabel lblViews3DName
```
lblViews3DSet
```
javax.swing.JLabel lblViews3DSet
```

lblViews3DTranslation

javax.swing.JLabel lblViews3DTranslation

lblViews3DUp
```
javax.swing.JLabel lblViews3DUp
```
lblWindowCount
```
javax.swing.JLabel lblWindowCount
```
lblWindowList
```
javax.swing.JLabel lblWindowList
```
lblWindows
```
CategoryTitle lblWindows
```
lstVideo3DTasks
```
javax.swing.JTable lstVideo3DTasks
```
lstViews3DWindows
```
javax.swing.JList lstViews3DWindows
```

ma

mgui.interfaces.graphics.InterfaceGraphicPanel.mouseAdapter ma

newWindowName
```
java.lang.String newWindowName
```
newWindowType
```
java.lang.String newWindowType
```

rootNode

javax.swing.tree.DefaultMutableTreeNode rootNode

scrVideo3DTasks
```
javax.swing.JScrollPane scrVideo3DTasks
```

scrViews3DSetSelected

javax.swing.JScrollPane scrViews3DSetSelected

scrWindowList
```
javax.swing.JScrollPane scrWindowList
```
sldVideoClock
```
javax.swing.JSlider sldVideoClock
```
sldViews3DUp
```
javax.swing.JSlider sldViews3DUp
```
sldViews3DZoom
```
javax.swing.JSlider sldViews3DZoom
```

sourceTypes

java.util.ArrayList<InterfaceGraphic<?>> sourceTypes

treeSourcePanel
```
javax.swing.JPanel treeSourcePanel
```
treeSources
```
javax.swing.JTree treeSources
```

treeSourceScrollPane

javax.swing.JScrollPane treeSourceScrollPane

txtVideo3DClock
```
javax.swing.JTextField txtVideo3DClock
```

txtVideo3DDuration

javax.swing.JTextField txtVideo3DDuration

txtVideo3DName
```
javax.swing.JTextField txtVideo3DName
```

txtVideo3DOutputFile

javax.swing.JTextField txtVideo3DOutputFile

txtVideo3DRefresh

javax.swing.JTextField txtVideo3DRefresh

txtViews3DLOS_x
```
javax.swing.JTextField txtViews3DLOS_x
```
txtViews3DLOS_y
```
javax.swing.JTextField txtViews3DLOS_y
```
txtViews3DLOS_z
```
javax.swing.JTextField txtViews3DLOS_z
```
txtViews3DName
```
javax.swing.JTextField txtViews3DName
```

txtViews3DTarget_x

javax.swing.JTextField txtViews3DTarget_x

txtViews3DTarget_y

javax.swing.JTextField txtViews3DTarget_y

txtViews3DTarget_z

javax.swing.JTextField txtViews3DTarget_z

txtViews3DTranslation_x

javax.swing.JTextField txtViews3DTranslation_x

txtViews3DTranslation_y

javax.swing.JTextField txtViews3DTranslation_y

txtViews3DUp_x
```
javax.swing.JTextField txtViews3DUp_x
```
txtViews3DUp_y
```
javax.swing.JTextField txtViews3DUp_y
```
txtViews3DUp_z
```
javax.swing.JTextField txtViews3DUp_z
```
txtViews3DZoom
```
javax.swing.JTextField txtViews3DZoom
```
txtWindowCount
```
javax.swing.JTextField txtWindowCount
```
video3DOutputOptions
```
VideoOutputOptions video3DOutputOptions
```

video3DTaskModel

mgui.interfaces.graphics.InterfaceGraphicPanel.VideoTaskListModel video3DTaskModel

videoTaskOptions
```
VideoTaskOptions videoTaskOptions
```
window_list
```
javax.swing.JTable window_list
```

window_list_model

mgui.interfaces.graphics.InterfaceGraphicPanel.WindowListModel window_list_model

windowNew
```
int[] windowNew
```

Class mgui.interfaces.graphics.InterfaceGraphicPanel.GraphicWindowListEditor extends javax.swing.AbstractCellEditor implements Serializable
- Serialized Fields
  - combo_box
    
    InterfaceComboBox combo_box
  - update
    
    boolean update
Class mgui.interfaces.graphics.InterfaceGraphicPanel.GraphicWindowListRenderer extends InterfaceComboBox implements Serializable

Class mgui.interfaces.graphics.InterfaceGraphicTextBox extends InterfaceTextBox implements Serializable

Serialized Fields

map2D
```
Map2D map2D
```
map3D
```
Map3D map3D
```

mouseAdapter

mgui.interfaces.graphics.InterfaceGraphicTextBox.TextMouseListener mouseAdapter

propertyAdapter

mgui.interfaces.graphics.InterfaceGraphicTextBox.TextPropertyListener propertyAdapter

theMap
```
Map theMap
```
thisRef
```
InterfaceGraphicTextBox thisRef
```

Class mgui.interfaces.graphics.InterfaceGraphicWindow extends InterfacePanel implements Serializable

Serialized Fields

old_panel
```
InterfaceGraphic<?> old_panel
```
panel
```
InterfaceGraphic<?> panel
```
parent_panel
```
WindowContainer parent_panel
```
popup_length
```
int popup_length
```

title_button

InterfaceGraphicWindow.GraphicButton title_button

window_listeners

java.util.ArrayList<WindowListener> window_listeners

Class mgui.interfaces.graphics.InterfaceGraphicWindow.GraphicButton extends javax.swing.JButton implements Serializable
- Serialized Fields
  - hover_background
    
    java.awt.Color hover_background
  - is_expanded
    
    boolean is_expanded
  - regular_background
    
    java.awt.Color regular_background
Class mgui.interfaces.graphics.PostRenderingCanvas3D extends org.jogamp.java3d.Canvas3D implements Serializable
- Serialized Fields
  - offscreen_canvas
    
    mgui.interfaces.graphics.PostRenderingCanvas3D.OffScreenCanvas3D offscreen_canvas
  - parent
    
    InterfaceCanvas3D parent
  - post_render
    
    boolean post_render
  - post_render_shapes
    
    java.util.ArrayList<Shape2DInt> post_render_shapes
Class mgui.interfaces.graphics.WindowEvent extends java.util.EventObject implements Serializable
- Serialized Fields
  - type
    
    WindowEvent.EventType type

Package mgui.interfaces.graphics.util
- Class mgui.interfaces.graphics.util.AxesEvent extends java.util.EventObject implements Serializable
Package mgui.interfaces.graphics.video
- Class mgui.interfaces.graphics.video.RotateView3DTaskDialogPanel extends VideoTaskDialogPanel implements Serializable
  - Serialized Fields
    
    handle_combo
    
    boolean handle_combo
    
    lblAngleX
    
    javax.swing.JLabel lblAngleX
    
    lblAngleY
    
    javax.swing.JLabel lblAngleY
    
    task
    
    RotateView3DTask task
    
    txtAngleX
    
    javax.swing.JTextField txtAngleX
    
    txtAngleY
    
    javax.swing.JTextField txtAngleY
- Class mgui.interfaces.graphics.video.SetView3DTaskDialogPanel extends VideoTaskDialogPanel implements Serializable
  - Serialized Fields
    
    chkTarget
    
    javax.swing.JCheckBox chkTarget
    
    chkZoom
    
    javax.swing.JCheckBox chkZoom
    
    cmbView
    
    InterfaceComboBox cmbView
    
    handle_combo
    
    boolean handle_combo
    
    lblView
    
    javax.swing.JLabel lblView
    
    task
    
    SetView3DTask task
- Class mgui.interfaces.graphics.video.VideoEvent extends java.util.EventObject implements Serializable
- Class mgui.interfaces.graphics.video.VideoException extends java.lang.Exception implements Serializable
- Class mgui.interfaces.graphics.video.VideoTaskDialog extends InterfaceOptionsDialogBox implements Serializable
  - Serialized Fields
    
    cmbTask
    
    javax.swing.JComboBox cmbTask
    
    lblStart
    
    javax.swing.JLabel lblStart
    
    lblStop
    
    javax.swing.JLabel lblStop
    
    lblTask
    
    javax.swing.JLabel lblTask
    
    panel
    
    InterfacePanel panel
    
    pnlVideoTask
    
    VideoTaskDialogPanel pnlVideoTask
    
    txtStart
    
    javax.swing.JTextField txtStart
    
    txtStop
    
    javax.swing.JTextField txtStop
    
    video_type
    
    int video_type
- Class mgui.interfaces.graphics.video.VideoTaskDialogPanel extends InterfacePanel implements Serializable

Package mgui.interfaces.graphs

Class mgui.interfaces.graphs.DefaultGraph extends InterfaceAbstractGraph implements Serializable
- Serialized Fields
  - nodes
    
    java.util.HashMap<java.lang.String,AbstractGraphNode> nodes
Class mgui.interfaces.graphs.GraphException extends java.lang.Exception implements Serializable

Class mgui.interfaces.graphs.InterfaceAbstractGraph extends edu.uci.ics.jung.graph.SparseGraph<AbstractGraphNode,AbstractGraphEdge> implements Serializable

Serialized Fields

attributes
```
AttributeList attributes
```

graphListeners

java.util.ArrayList<InterfaceGraphListener> graphListeners

isDestroyed
```
boolean isDestroyed
```
name
```
java.lang.String name
```
treeNode
```
InterfaceTreeNode treeNode
```

treeNodes

java.util.ArrayList<InterfaceTreeNode> treeNodes

xml_block
```
java.lang.String xml_block
```
xml_count
```
int xml_count
```
xml_itr
```
int xml_itr
```

xml_nodes

java.util.HashMap<java.lang.Integer,AbstractGraphNode> xml_nodes

Class mgui.interfaces.graphs.InterfaceGraphDisplay extends InterfaceGraphic<ToolGraph> implements Serializable

Serialized Fields

arrow_colour_transformer

org.apache.commons.collections15.Transformer<AbstractGraphEdge,java.awt.Paint> arrow_colour_transformer

current_layout

edu.uci.ics.jung.algorithms.layout.Layout<AbstractGraphNode,AbstractGraphEdge> current_layout

currentTool
```
ToolGraph currentTool
```
defaultTool
```
ToolGraph defaultTool
```

edge_colour_transformer

org.apache.commons.collections15.Transformer<AbstractGraphEdge,java.awt.Paint> edge_colour_transformer

edge_label_renderer

GraphFunctions.GraphEdgeLabelRenderer edge_label_renderer

edge_label_transformer

org.apache.commons.collections15.Transformer<AbstractGraphEdge,java.lang.String> edge_label_transformer

edge_stroke_transformer

org.apache.commons.collections15.Transformer<AbstractGraphEdge,java.awt.Stroke> edge_stroke_transformer

graph
```
InterfaceAbstractGraph graph
```

label_position

edu.uci.ics.jung.visualization.renderers.Renderer.VertexLabel.Position label_position

node_fill_transformer

org.apache.commons.collections15.Transformer<AbstractGraphNode,java.awt.Paint> node_fill_transformer

node_font_transformer

org.apache.commons.collections15.Transformer<AbstractGraphNode,java.awt.Font> node_font_transformer

node_label_renderer

GraphFunctions.GraphNodeLabelRenderer node_label_renderer

observable_graph

edu.uci.ics.jung.graph.ObservableGraph<AbstractGraphNode,AbstractGraphEdge> observable_graph

propertyChange

java.beans.PropertyChangeSupport propertyChange

scrollPane

edu.uci.ics.jung.visualization.GraphZoomScrollPane scrollPane

show_arrows

GraphFunctions.ArrowVisibility show_arrows

show_edges

GraphFunctions.EdgeVisibility show_edges

show_nodes

GraphFunctions.NodeVisibility show_nodes

toolLock
```
boolean toolLock
```

vertex_label_transformer

org.apache.commons.collections15.Transformer<AbstractGraphNode,java.lang.String> vertex_label_transformer

vertex_shape_transformer

org.apache.commons.collections15.Transformer<AbstractGraphNode,java.awt.Shape> vertex_shape_transformer

viewer

edu.uci.ics.jung.visualization.VisualizationViewer<AbstractGraphNode,AbstractGraphEdge> viewer

viewer_adapter

mgui.interfaces.graphs.InterfaceGraphDisplay.ViewerMouseListener viewer_adapter

Class mgui.interfaces.graphs.InterfaceGraphDisplayTitle extends InterfaceGraphicWindow implements Serializable
Class mgui.interfaces.graphs.InterfaceGraphEvent extends java.util.EventObject implements Serializable
- Serialized Fields
  - eventCode
    
    int eventCode

Package mgui.interfaces.graphs.tree
- Class mgui.interfaces.graphs.tree.GraphTreeCellRenderer extends javax.swing.JPanel implements Serializable
  - Serialized Fields
    
    hasFocus
    
    boolean hasFocus
    
    label
    
    javax.swing.JLabel label
    
    selected
    
    boolean selected
    
    selectedBG
    
    java.awt.Color selectedBG
    
    tree
    
    javax.swing.JTree tree
Package mgui.interfaces.gui
- Class mgui.interfaces.gui.ColourBarOutDialog extends javax.swing.JDialog implements Serializable
  - Serialized Fields
    
    cmdCancel
    
    javax.swing.JButton cmdCancel
    
    cmdWrite
    
    javax.swing.JButton cmdWrite
    
    colour_bar
    
    ContinuousColourBar colour_bar
    
    split_pane
    
    javax.swing.JSplitPane split_pane
    
    split_pos
    
    double split_pos
    
    update_split_pos
    
    boolean update_split_pos
- Class mgui.interfaces.gui.ColourButton extends javax.swing.JButton implements Serializable
  - Serialized Fields
    
    border_width
    
    float border_width
    
    colour
    
    java.awt.Color colour
    
    current_listener
    
    java.awt.event.ActionListener current_listener
    
    show_dialog
    
    boolean show_dialog
    
    show_label
    
    boolean show_label
- Class mgui.interfaces.gui.FileButton extends javax.swing.JButton implements Serializable
  - Serialized Fields
    
    current_file
    
    InterfaceFile current_file
    
    external_action_command
    
    java.lang.String external_action_command
- Class mgui.interfaces.gui.FontDialog extends javax.swing.JDialog implements Serializable
  - Serialized Fields
    
    font
    
    mgui.interfaces.gui.FontDialog.FontChooser font
- Class mgui.interfaces.gui.InterfaceComboBox extends javax.swing.JComboBox<java.lang.Object> implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    
    mode
    
    InterfaceComboBox.RenderMode mode
    
    name_transformer
    
    org.apache.commons.collections15.Transformer<java.lang.Object,java.lang.String> name_transformer
    
    popupWidth
    
    int popupWidth
    
    ui
    
    mgui.interfaces.gui.SteppedComboBoxUI ui
- Class mgui.interfaces.gui.InterfaceComboBoxBak extends javax.swing.JComboBox implements Serializable
  - Serialized Fields
    
    height
    
    int height
    
    mode
    
    InterfaceComboBoxBak.RenderMode mode
    
    show_icons
    
    boolean show_icons
    
    width
    
    int width
- Class mgui.interfaces.gui.InterfaceComboBoxRenderer extends javax.swing.plaf.basic.BasicComboBoxRenderer implements Serializable
  - Serialized Fields
    
    icon
    
    javax.swing.Icon icon
    
    name_transformer
    
    org.apache.commons.collections15.Transformer<java.lang.Object,java.lang.String> name_transformer
    
    show_icon
    
    boolean show_icon
- Class mgui.interfaces.gui.InterfaceProgressBar extends javax.swing.JPanel implements Serializable
  - Serialized Fields
    
    allow_changes
    
    boolean allow_changes
    
    cancel
    
    javax.swing.JButton cancel
    
    is_cancelled
    
    boolean is_cancelled
    
    is_registered
    
    boolean is_registered
    
    isDestroyed
    
    boolean isDestroyed
    
    label
    
    javax.swing.JLabel label
    
    last_progress
    
    int last_progress
    
    progressBar
    
    javax.swing.JProgressBar progressBar
    
    update_interval
    
    float update_interval
- Class mgui.interfaces.gui.LineStyleDialog extends InterfaceDialogBox implements Serializable
  - Serialized Fields
    
    caps
    
    NameMap caps
    
    cmbCap
    
    javax.swing.JComboBox cmbCap
    
    cmbDash
    
    javax.swing.JComboBox cmbDash
    
    cmbJoin
    
    javax.swing.JComboBox cmbJoin
    
    cmbWidth
    
    javax.swing.JComboBox cmbWidth
    
    cmdAddDash
    
    javax.swing.JButton cmdAddDash
    
    cmdRemDash
    
    javax.swing.JButton cmdRemDash
    
    cmdWidthDown
    
    javax.swing.JButton cmdWidthDown
    
    cmdWidthUp
    
    javax.swing.JButton cmdWidthUp
    
    currentStroke
    
    java.awt.BasicStroke currentStroke
    
    joins
    
    NameMap joins
    
    lblCap
    
    javax.swing.JLabel lblCap
    
    lblDash
    
    javax.swing.JLabel lblDash
    
    lblJoin
    
    javax.swing.JLabel lblJoin
    
    lblSample
    
    javax.swing.JLabel lblSample
    
    lblWidth
    
    javax.swing.JLabel lblWidth
    
    lineLayout
    
    LineLayout lineLayout
    
    pnlSample
    
    mgui.interfaces.gui.LineStyleDialog.LineSample pnlSample
    
    strokeRenderer
    
    mgui.interfaces.gui.LineStyleDialog.StrokeSample strokeRenderer
    
    txtDashArray
    
    javax.swing.JTextField txtDashArray
    
    txtWidth
    
    javax.swing.JTextField txtWidth
- Class mgui.interfaces.gui.MatrixEditorDialog extends InterfaceDialogBox implements Serializable
  - Serialized Fields
    
    cmdInvert
    
    javax.swing.JButton cmdInvert
    
    cmdLoad
    
    javax.swing.JButton cmdLoad
    
    lblMessage
    
    javax.swing.JLabel lblMessage
    
    matrix
    
    org.jogamp.vecmath.Matrix4d matrix
    
    model
    
    mgui.interfaces.gui.MatrixEditorDialog.MatrixModel model
    
    panel
    
    InterfacePanel panel
    
    table
    
    javax.swing.JTable table
- Class mgui.interfaces.gui.RowNumberTable extends javax.swing.JTable implements Serializable
  - Serialized Fields
    
    main
    
    javax.swing.JTable main
- Class mgui.interfaces.gui.RowNumberTable.RowNumberRenderer extends javax.swing.table.DefaultTableCellRenderer implements Serializable
- Class mgui.interfaces.gui.VariableComboBox extends javax.swing.JComboBox implements Serializable
  - Serialized Fields
    
    listener
    
    mgui.interfaces.gui.PopupListener listener
    
    listWidth
    
    int listWidth

Package mgui.interfaces.io

Class mgui.interfaces.io.DataSourceEvent extends java.util.EventObject implements Serializable
- Serialized Fields
  - size
    
    int size

Class mgui.interfaces.io.InterfaceFilePanel extends InterfacePanel implements Serializable

Serialized Fields

cmbInputFileType
```
InterfaceComboBox cmbInputFileType
```
cmbOutputFileType
```
InterfaceComboBox cmbOutputFileType
```
cmdExecuteInput
```
javax.swing.JButton cmdExecuteInput
```
cmdExecuteOutput
```
javax.swing.JButton cmdExecuteOutput
```
cmdInputFile
```
javax.swing.JButton cmdInputFile
```
cmdInputOptions
```
javax.swing.JButton cmdInputOptions
```
cmdOutputFile
```
javax.swing.JButton cmdOutputFile
```
cmdOutputOptions
```
javax.swing.JButton cmdOutputOptions
```
currentInputDialog
```
InterfaceIODialogBox currentInputDialog
```
currentInputOptions
```
InterfaceIOOptions currentInputOptions
```
currentInputType
```
InterfaceIOType currentInputType
```

currentOutputDialog

InterfaceIODialogBox currentOutputDialog

currentOutputOptions
```
InterfaceIOOptions currentOutputOptions
```
currentOutputType
```
InterfaceIOType currentOutputType
```
inputFiles
```
java.io.File[] inputFiles
```

ioTypes

java.util.HashMap<java.lang.String,InterfaceIOType> ioTypes

lblInputFile
```
javax.swing.JLabel lblInputFile
```
lblInputFileType
```
javax.swing.JLabel lblInputFileType
```
lblInputHeader
```
CategoryTitle lblInputHeader
```
lblOutputFile
```
javax.swing.JLabel lblOutputFile
```
lblOutputFileType
```
javax.swing.JLabel lblOutputFileType
```
lblOutputHeader
```
CategoryTitle lblOutputHeader
```
outputFiles
```
java.io.File[] outputFiles
```
txtInputFile
```
javax.swing.JTextField txtInputFile
```
txtOutputFile
```
javax.swing.JTextField txtOutputFile
```

Class mgui.interfaces.io.InterfaceIODialogBox extends InterfaceDialogBox implements Serializable
- Serialized Fields
  - io_objects
    
    java.util.ArrayList<InterfaceObject> io_objects
  - io_panel
    
    InterfaceIOPanel io_panel
  - options
    
    InterfaceIOOptions options

Class mgui.interfaces.io.VolumeFileWriteDialog extends InterfaceDialogBox implements Serializable

Serialized Fields

chkRemAlpha
```
javax.swing.JCheckBox chkRemAlpha
```
Deprecated.

cmbAnalyzeDataType

javax.swing.JComboBox cmbAnalyzeDataType

Deprecated.

cmbFileFormat
```
javax.swing.JComboBox cmbFileFormat
```
Deprecated.
cmdBrowse
```
javax.swing.JButton cmdBrowse
```
Deprecated.

filters

java.util.ArrayList<javax.swing.filechooser.FileNameExtensionFilter> filters

Deprecated.

lblAnalyzeDataType
```
javax.swing.JLabel lblAnalyzeDataType
```
Deprecated.
lblFileFormat
```
javax.swing.JLabel lblFileFormat
```
Deprecated.
lblFileName
```
javax.swing.JLabel lblFileName
```
Deprecated.
lineLayout
```
LineLayout lineLayout
```
Deprecated.
txtFileName
```
javax.swing.JTextField txtFileName
```
Deprecated.
updateFormat
```
boolean updateFormat
```
Deprecated.
volFile
```
java.io.File volFile
```
Deprecated.
volume
```
Grid3D volume
```
Deprecated.

Package mgui.interfaces.io.temp
- Class mgui.interfaces.io.temp.TempBitmapDrawer extends javax.swing.JPanel implements Serializable
  - Serialized Fields
    
    data
    
    byte[] data
    
    editable
    
    boolean editable
    
    image
    
    java.awt.image.BufferedImage image
Package mgui.interfaces.layouts
- Class mgui.interfaces.layouts.CategoryLayout extends LineLayout implements Serializable
  - Serialized Fields
    
    categories
    
    java.util.ArrayList<mgui.interfaces.layouts.CategoryLayout.catObj> categories
    
    categoryHeight
    
    int categoryHeight
    
    categorySpacing
    
    int categorySpacing
    
    constraints
    
    java.util.ArrayList<CategoryLayoutConstraints> constraints
    
    height
    
    int height
- Class mgui.interfaces.layouts.CategoryLayoutConstraints extends java.lang.Object implements Serializable
  - Serialized Fields
    
    category
    
    java.lang.String category
    
    hPos
    
    double hPos
    
    hWeight
    
    double hWeight
    
    lineFrom
    
    int lineFrom
    
    lineTo
    
    int lineTo
    
    vWeight
    
    double vWeight
- Class mgui.interfaces.layouts.CategoryTitle extends javax.swing.JButton implements Serializable
  - Serialized Fields
    
    category
    
    java.lang.String category
    
    down_arrow
    
    java.awt.image.BufferedImage down_arrow
    
    isExpanded
    
    boolean isExpanded
    
    parentObj
    
    InterfacePanel parentObj
    
    right_arrow
    
    java.awt.image.BufferedImage right_arrow
- Class mgui.interfaces.layouts.InterfaceLayoutFrame extends javax.swing.JFrame implements Serializable
  - Serialized Fields
    
    panel
    
    InterfaceLayoutPanel panel
    
    scroll_pane
    
    javax.swing.JScrollPane scroll_pane
- Class mgui.interfaces.layouts.InterfaceLayoutPanel extends InterfacePanel implements Serializable
- Class mgui.interfaces.layouts.InterfaceLayoutWindow extends InterfaceGraphic<ToolLayout2D> implements Serializable
- Class mgui.interfaces.layouts.LineLayout extends java.lang.Object implements Serializable
  - Serialized Fields
    
    components
    
    java.util.ArrayList<java.awt.Component> components
    
    constraints
    
    java.util.ArrayList<LineLayoutConstraints> constraints
    
    flexible_component
    
    java.awt.Component flexible_component
    
    lineGap
    
    int lineGap
    
    lineHeight
    
    int lineHeight
    
    lineWidth
    
    int lineWidth
    
    maximumSize
    
    java.awt.Dimension maximumSize
    
    minimumSize
    
    java.awt.Dimension minimumSize
    
    preferredSize
    
    java.awt.Dimension preferredSize

Package mgui.interfaces.maps

Class mgui.interfaces.maps.ContinuousColourBar extends InterfacePanel implements Serializable

Serialized Fields

actionListeners

java.util.ArrayList<java.awt.event.ActionListener> actionListeners

bar
```
java.awt.image.BufferedImage bar
```
decimals
```
int decimals
```
divFont
```
java.lang.String divFont
```
divSize
```
double divSize
```
fontScale
```
double fontScale
```
isDragging
```
boolean isDragging
```
label_font
```
java.awt.Font label_font
```
lineWeightScale
```
double lineWeightScale
```
map
```
ContinuousColourMap map
```
max
```
double max
```
min
```
double min
```
noDivisions
```
int noDivisions
```
normalLine
```
java.awt.BasicStroke normalLine
```
padding
```
int padding
```
selectedAnchor
```
int selectedAnchor
```
selectedLine
```
java.awt.BasicStroke selectedLine
```
showAnchors
```
boolean showAnchors
```
showDivisions
```
boolean showDivisions
```
updateBar
```
boolean updateBar
```

Class mgui.interfaces.maps.DiscreteColourMapLayout extends InterfaceLayoutPanel implements Serializable
- Serialized Fields
  - box_size
    
    int box_size
  - font
    
    java.awt.Font font
  - lineLayout
    
    LineLayout lineLayout
  - map
    
    DiscreteColourMap map
  - preferred_y
    
    int preferred_y
Class mgui.interfaces.maps.DiscreteColourMapTable extends javax.swing.JTable implements Serializable
- Serialized Fields
  - model
    
    mgui.interfaces.maps.DiscreteColourMapTable.TableModel model
Class mgui.interfaces.maps.DiscreteColourMapTable.Editor extends javax.swing.AbstractCellEditor implements Serializable
- Serialized Fields
  - colourButton
    
    ColourButton colourButton
  - currentValue
    
    java.lang.Object currentValue
  - indexBox
    
    javax.swing.JTextField indexBox
  - nameBox
    
    javax.swing.JTextField nameBox

Class mgui.interfaces.maps.InterfaceMapPanel extends InterfacePanel implements Serializable

Serialized Fields

barContinuousColour
```
ContinuousColourBar barContinuousColour
```

chkDiscreteNameMap

javax.swing.JCheckBox chkDiscreteNameMap

cmbContinuousColourMaps

InterfaceComboBox cmbContinuousColourMaps

cmbDiscreteColourMaps
```
InterfaceComboBox cmbDiscreteColourMaps
```
cmbDiscreteNameMaps
```
InterfaceComboBox cmbDiscreteNameMaps
```
cmbNameMaps
```
InterfaceComboBox cmbNameMaps
```
cmdAddContinuous
```
javax.swing.JButton cmdAddContinuous
```
cmdAnchorColour
```
ColourButton cmdAnchorColour
```
cmdCopyContinuous
```
javax.swing.JButton cmdCopyContinuous
```
cmdDelContinuous
```
javax.swing.JButton cmdDelContinuous
```
cmdDiscreteDelete
```
javax.swing.JButton cmdDiscreteDelete
```

cmdDiscreteLayoutColour

javax.swing.JButton cmdDiscreteLayoutColour

cmdDiscreteLoad
```
javax.swing.JButton cmdDiscreteLoad
```
cmdDiscreteNew
```
javax.swing.JButton cmdDiscreteNew
```
cmdDiscreteSave
```
javax.swing.JButton cmdDiscreteSave
```

cmdDiscreteShowLayout

javax.swing.JButton cmdDiscreteShowLayout

cmdInvertContinuous
```
javax.swing.JButton cmdInvertContinuous
```
cmdLoadContinuous
```
javax.swing.JButton cmdLoadContinuous
```
cmdNextAnchor
```
javax.swing.JButton cmdNextAnchor
```
cmdPrevAnchor
```
javax.swing.JButton cmdPrevAnchor
```
cmdSaveContinuous
```
javax.swing.JButton cmdSaveContinuous
```
cmdUpdateContinuous
```
javax.swing.JButton cmdUpdateContinuous
```
lblAnchor
```
javax.swing.JLabel lblAnchor
```
lblAnchorAlpha
```
javax.swing.JLabel lblAnchorAlpha
```
lblAnchorColour
```
javax.swing.JLabel lblAnchorColour
```
lblAnchorValue
```
javax.swing.JLabel lblAnchorValue
```
lblContinuousColour
```
CategoryTitle lblContinuousColour
```
lblContMapName
```
javax.swing.JLabel lblContMapName
```
lblDiscreteColour
```
CategoryTitle lblDiscreteColour
```
lblNameMaps
```
CategoryTitle lblNameMaps
```

paneDiscreteColour

javax.swing.JScrollPane paneDiscreteColour

paneNameMap
```
javax.swing.JScrollPane paneNameMap
```

tblDiscreteColour

DiscreteColourMapTable tblDiscreteColour

tblNameMap
```
NameMapTable tblNameMap
```
txtAnchor
```
javax.swing.JTextField txtAnchor
```
txtAnchorAlpha
```
javax.swing.JTextField txtAnchorAlpha
```
txtAnchorValue
```
javax.swing.JTextField txtAnchorValue
```
txtContMapName
```
javax.swing.JTextField txtContMapName
```
updateCombo
```
boolean updateCombo
```

Class mgui.interfaces.maps.InvalidValueClassException extends java.lang.Exception implements Serializable
Class mgui.interfaces.maps.MapEvent extends java.util.EventObject implements Serializable
Class mgui.interfaces.maps.NameMapTable extends javax.swing.JTable implements Serializable
- Serialized Fields
  - model
    
    mgui.interfaces.maps.NameMapTable.TableModel model
Class mgui.interfaces.maps.NoSuchTypeException extends java.lang.Exception implements Serializable
Class mgui.interfaces.maps.TypeExistsException extends java.lang.Exception implements Serializable

Package mgui.interfaces.math

Class mgui.interfaces.math.MathExpressionDialogBox extends InterfaceOptionsDialogBox implements Serializable

Serialized Fields

cmdClear
```
javax.swing.JButton cmdClear
```
cmdVerify
```
javax.swing.JButton cmdVerify
```
lblExpression
```
javax.swing.JLabel lblExpression
```
lblVariable
```
javax.swing.JLabel lblVariable
```
lblVariableList
```
javax.swing.JLabel lblVariableList
```
lstVariables
```
javax.swing.JList lstVariables
```
scrExpression
```
javax.swing.JScrollPane scrExpression
```
scrVariables
```
javax.swing.JScrollPane scrVariables
```
txtExpression
```
javax.swing.JTextArea txtExpression
```
txtVariable
```
javax.swing.JTextField txtVariable
```

Package mgui.interfaces.menus
- Class mgui.interfaces.menus.InterfaceMenu extends javax.swing.JMenu implements Serializable
  - Serialized Fields
    
    action_command
    
    java.lang.String action_command
    
    object
    
    PopupMenuObject object
- Class mgui.interfaces.menus.InterfacePopupMenu extends javax.swing.JPopupMenu implements Serializable
  - Serialized Fields
    
    object
    
    PopupMenuObject object

Package mgui.interfaces.models

Class mgui.interfaces.models.InterfaceDynamicModelPanel extends InterfacePanel implements Serializable

Serialized Fields

cmbExecTask
```
javax.swing.JComboBox cmbExecTask
```
cmbModel
```
javax.swing.JComboBox cmbModel
```
cmbModelType
```
javax.swing.JComboBox cmbModelType
```
cmdAddModel
```
javax.swing.JButton cmdAddModel
```
cmdCopyModel
```
javax.swing.JButton cmdCopyModel
```
cmdDelModel
```
javax.swing.JButton cmdDelModel
```
cmdExecPlay
```
javax.swing.JButton cmdExecPlay
```
cmdExecPlayAll
```
javax.swing.JButton cmdExecPlayAll
```
cmdExecReset
```
javax.swing.JButton cmdExecReset
```
cmdExecSetEngine
```
javax.swing.JButton cmdExecSetEngine
```
cmdExecSetModel
```
javax.swing.JButton cmdExecSetModel
```
cmdExecStep
```
javax.swing.JButton cmdExecStep
```
cmdExecStop
```
javax.swing.JButton cmdExecStop
```
cmdSetModel
```
javax.swing.JButton cmdSetModel
```
currentModel
```
DynamicModel currentModel
```
engine
```
DynamicModelEngine engine
```
lblExecControlParams
```
javax.swing.JLabel lblExecControlParams
```
lblExecConverge
```
javax.swing.JLabel lblExecConverge
```
lblExecDeltaE
```
javax.swing.JLabel lblExecDeltaE
```
lblExecEnergy
```
javax.swing.JLabel lblExecEnergy
```
lblExecExecute
```
javax.swing.JLabel lblExecExecute
```
lblExecIteration
```
javax.swing.JLabel lblExecIteration
```
lblExecIterStep
```
javax.swing.JLabel lblExecIterStep
```
lblExecPlayRate
```
javax.swing.JLabel lblExecPlayRate
```
lblExecSample
```
javax.swing.JLabel lblExecSample
```
lblExecStepTo
```
javax.swing.JLabel lblExecStepTo
```
lblExecSysInfo
```
javax.swing.JLabel lblExecSysInfo
```
lblExecTask
```
javax.swing.JLabel lblExecTask
```
lblExecTime
```
javax.swing.JLabel lblExecTime
```
lblExecTimeStep
```
javax.swing.JLabel lblExecTimeStep
```
lblExecution
```
CategoryTitle lblExecution
```
lblModel
```
javax.swing.JLabel lblModel
```
lblModels
```
CategoryTitle lblModels
```
lblModelType
```
javax.swing.JLabel lblModelType
```
selectedModel
```
DynamicModel selectedModel
```
txtExecConverge
```
javax.swing.JTextField txtExecConverge
```
txtExecDeltaE
```
javax.swing.JTextField txtExecDeltaE
```
txtExecEnergy
```
javax.swing.JTextField txtExecEnergy
```
txtExecIteration
```
javax.swing.JTextField txtExecIteration
```
txtExecIterStep
```
javax.swing.JTextField txtExecIterStep
```
txtExecPlayRate
```
javax.swing.JTextField txtExecPlayRate
```
txtExecSample
```
javax.swing.JTextField txtExecSample
```
txtExecStepTo
```
javax.swing.JTextField txtExecStepTo
```
txtExecTime
```
javax.swing.JTextField txtExecTime
```
txtExecTimeStep
```
javax.swing.JTextField txtExecTimeStep
```

Package mgui.interfaces.neuro

Class mgui.interfaces.neuro.CorticalThicknessDataTableDialogBox extends InterfaceOptionsDialogBox implements Serializable

Serialized Fields

lblDataTable
```
javax.swing.JLabel lblDataTable
```

rootNode

javax.swing.tree.DefaultMutableTreeNode rootNode

selected_field
```
java.lang.String selected_field
```
selected_source
```
java.lang.String selected_source
```
selected_table
```
java.lang.String selected_table
```
treeSourcePanel
```
javax.swing.JPanel treeSourcePanel
```
treeSources
```
javax.swing.JTree treeSources
```

treeSourceScrollPane

javax.swing.JScrollPane treeSourceScrollPane

Class mgui.interfaces.neuro.CorticalThicknessDialogBox extends InterfaceOptionsTabbedDialogBox implements Serializable

Serialized Fields

atlas_table_model

mgui.interfaces.neuro.CorticalThicknessDialogBox.AtlasTableModel atlas_table_model

chkPrependSubject
```
javax.swing.JCheckBox chkPrependSubject
```
chkVolAlpha
```
javax.swing.JCheckBox chkVolAlpha
```
chkVolAsComposite
```
javax.swing.JCheckBox chkVolAsComposite
```
chkVolDataType
```
javax.swing.JCheckBox chkVolDataType
```
chkVolDim
```
javax.swing.JCheckBox chkVolDim
```

chkVolFixedIntensity

javax.swing.JCheckBox chkVolFixedIntensity

chkVolFlipX
```
javax.swing.JCheckBox chkVolFlipX
```
chkVolFlipY
```
javax.swing.JCheckBox chkVolFlipY
```
chkVolFlipZ
```
javax.swing.JCheckBox chkVolFlipZ
```
chkVolGeom
```
javax.swing.JCheckBox chkVolGeom
```
chkVolOrigin
```
javax.swing.JCheckBox chkVolOrigin
```

chkVolPreserveExisting

javax.swing.JCheckBox chkVolPreserveExisting

chkVolRelIntensity

javax.swing.JCheckBox chkVolRelIntensity

chkVolShow3D
```
javax.swing.JCheckBox chkVolShow3D
```
cmbMeshDataLoader
```
javax.swing.JComboBox cmbMeshDataLoader
```
cmbMeshDataWriter
```
javax.swing.JComboBox cmbMeshDataWriter
```
cmbMeshLoader
```
javax.swing.JComboBox cmbMeshLoader
```
cmbMeshWriter
```
javax.swing.JComboBox cmbMeshWriter
```
cmbVolColourMap
```
javax.swing.JComboBox cmbVolColourMap
```
cmbVolDataType
```
javax.swing.JComboBox cmbVolDataType
```
cmbVolumeLoader
```
javax.swing.JComboBox cmbVolumeLoader
```
cmbVolumeWriter
```
javax.swing.JComboBox cmbVolumeWriter
```
cmdAddAtlas
```
javax.swing.JButton cmdAddAtlas
```
cmdBrowseAtlas
```
javax.swing.JButton cmdBrowseAtlas
```
cmdBrowseDir
```
javax.swing.JButton cmdBrowseDir
```
cmdLoadProfile
```
javax.swing.JButton cmdLoadProfile
```
cmdRemoveAtlas
```
javax.swing.JButton cmdRemoveAtlas
```
cmdSaveProfile
```
javax.swing.JButton cmdSaveProfile
```
lblAtlasDir
```
javax.swing.JLabel lblAtlasDir
```
lblAtlases
```
javax.swing.JLabel lblAtlases
```
lblCurrentAtlases
```
javax.swing.JLabel lblCurrentAtlases
```
lblGMContains
```
javax.swing.JLabel lblGMContains
```
lblLeftContains
```
javax.swing.JLabel lblLeftContains
```
lblMeshDataLoader
```
javax.swing.JLabel lblMeshDataLoader
```
lblMeshDataWriter
```
javax.swing.JLabel lblMeshDataWriter
```
lblMeshLoader
```
javax.swing.JLabel lblMeshLoader
```
lblMeshWriter
```
javax.swing.JLabel lblMeshWriter
```
lblMidContains
```
javax.swing.JLabel lblMidContains
```
lblProfileName
```
javax.swing.JLabel lblProfileName
```
lblRightContains
```
javax.swing.JLabel lblRightContains
```
lblSubjectDir
```
javax.swing.JLabel lblSubjectDir
```
lblSubjectPrefix
```
javax.swing.JLabel lblSubjectPrefix
```
lblVolAlphaMax
```
javax.swing.JLabel lblVolAlphaMax
```
lblVolAlphaMin
```
javax.swing.JLabel lblVolAlphaMin
```
lblVolBrightness
```
javax.swing.JLabel lblVolBrightness
```
lblVolColourMap
```
javax.swing.JLabel lblVolColourMap
```
lblVolContrast
```
javax.swing.JLabel lblVolContrast
```
lblVolDim
```
javax.swing.JLabel lblVolDim
```
lblVolDims
```
javax.swing.JLabel lblVolDims
```
lblVolFlipX
```
javax.swing.JLabel lblVolFlipX
```
lblVolFlipY
```
javax.swing.JLabel lblVolFlipY
```
lblVolFlipZ
```
javax.swing.JLabel lblVolFlipZ
```
lblVolFromHeader
```
javax.swing.JLabel lblVolFromHeader
```
lblVolGeom
```
javax.swing.JLabel lblVolGeom
```
lblVolIntensity
```
javax.swing.JLabel lblVolIntensity
```
lblVolMaxPct
```
javax.swing.JLabel lblVolMaxPct
```
lblVolMinPct
```
javax.swing.JLabel lblVolMinPct
```
lblVolOrigin
```
javax.swing.JLabel lblVolOrigin
```
lblVolumeLoader
```
javax.swing.JLabel lblVolumeLoader
```
lblVolumeWriter
```
javax.swing.JLabel lblVolumeWriter
```
lblWMContains
```
javax.swing.JLabel lblWMContains
```
lstAtlases
```
javax.swing.JScrollPane lstAtlases
```
txtAtlasDir
```
javax.swing.JTextField txtAtlasDir
```
txtGMContains
```
javax.swing.JTextField txtGMContains
```
txtLeftContains
```
javax.swing.JTextField txtLeftContains
```
txtMidContains
```
javax.swing.JTextField txtMidContains
```
txtProfileName
```
javax.swing.JTextField txtProfileName
```
txtRightContains
```
javax.swing.JTextField txtRightContains
```
txtSubjectDir
```
javax.swing.JTextField txtSubjectDir
```
txtSubjectPrefix
```
javax.swing.JTextField txtSubjectPrefix
```
txtVolAlphaMax
```
javax.swing.JTextField txtVolAlphaMax
```
txtVolAlphaMin
```
javax.swing.JTextField txtVolAlphaMin
```
txtVolBrightness
```
javax.swing.JTextField txtVolBrightness
```
txtVolContrast
```
javax.swing.JTextField txtVolContrast
```
txtVolDimX
```
javax.swing.JTextField txtVolDimX
```
txtVolDimY
```
javax.swing.JTextField txtVolDimY
```
txtVolDimZ
```
javax.swing.JTextField txtVolDimZ
```
txtVolGeomX
```
javax.swing.JTextField txtVolGeomX
```
txtVolGeomY
```
javax.swing.JTextField txtVolGeomY
```
txtVolGeomZ
```
javax.swing.JTextField txtVolGeomZ
```
txtVolMaxPct
```
javax.swing.JTextField txtVolMaxPct
```
txtVolMinPct
```
javax.swing.JTextField txtVolMinPct
```
txtVolOriginX
```
javax.swing.JTextField txtVolOriginX
```
txtVolOriginY
```
javax.swing.JTextField txtVolOriginY
```
txtVolOriginZ
```
javax.swing.JTextField txtVolOriginZ
```
txtWMContains
```
javax.swing.JTextField txtWMContains
```

Class mgui.interfaces.neuro.InterfaceCorticalThicknessPanel extends InterfacePanel implements Serializable

Serialized Fields

atlas_table_left

mgui.interfaces.neuro.InterfaceCorticalThicknessPanel.AtlasTableModel atlas_table_left

atlas_table_right

mgui.interfaces.neuro.InterfaceCorticalThicknessPanel.AtlasTableModel atlas_table_right

chkDataFilter
```
javax.swing.JCheckBox chkDataFilter
```
chkSubjectLeft
```
javax.swing.JCheckBox chkSubjectLeft
```
chkSubjectRight
```
javax.swing.JCheckBox chkSubjectRight
```
cmbDataWindow
```
javax.swing.JComboBox cmbDataWindow
```
cmbProfile
```
javax.swing.JComboBox cmbProfile
```

cmbSubjectShapeSet

javax.swing.JComboBox cmbSubjectShapeSet

cmdDataAddTable
```
javax.swing.JButton cmdDataAddTable
```
cmdDataRemTable
```
javax.swing.JButton cmdDataRemTable
```
cmdDataShowTable
```
javax.swing.JButton cmdDataShowTable
```
cmdProfileApply
```
javax.swing.JButton cmdProfileApply
```
cmdProfileEdit
```
javax.swing.JButton cmdProfileEdit
```
cmdProfileLoad
```
javax.swing.JButton cmdProfileLoad
```
cmdProfileNew
```
javax.swing.JButton cmdProfileNew
```
cmdSubjectLoad
```
javax.swing.JButton cmdSubjectLoad
```
cmdSubjectNext
```
javax.swing.JButton cmdSubjectNext
```
cmdSubjectPrev
```
javax.swing.JButton cmdSubjectPrev
```
cmdSubjectPreview
```
javax.swing.JButton cmdSubjectPreview
```

current_volume_input_options

VolumeInputOptions current_volume_input_options

data_tables

java.util.ArrayList<mgui.interfaces.neuro.InterfaceCorticalThicknessPanel.SubjectDataTable> data_tables

datatable_dialog

CorticalThicknessDataTableDialogBox datatable_dialog

datatable_options

CorticalThicknessDataTableOptions datatable_options

directory_dialog

CorticalThicknessDialogBox directory_dialog

directory_options

CorticalThicknessOptions directory_options

lblAtlas
```
javax.swing.JLabel lblAtlas
```
lblAtlases
```
CategoryTitle lblAtlases
```
lblAtlasesLeft
```
javax.swing.JLabel lblAtlasesLeft
```
lblAtlasesRight
```
javax.swing.JLabel lblAtlasesRight
```
lblAttributes
```
CategoryTitle lblAttributes
```
lblDataSource
```
CategoryTitle lblDataSource
```
lblDataTables
```
javax.swing.JLabel lblDataTables
```
lblDataWindow
```
javax.swing.JLabel lblDataWindow
```
lblOperations
```
CategoryTitle lblOperations
```
lblPlots
```
CategoryTitle lblPlots
```
lblProfile
```
javax.swing.JLabel lblProfile
```
lblProject
```
CategoryTitle lblProject
```
lblQueries
```
CategoryTitle lblQueries
```
lblShapes
```
CategoryTitle lblShapes
```
lblStatistics
```
CategoryTitle lblStatistics
```
lblSubjectData
```
javax.swing.JLabel lblSubjectData
```
lblSubjectList
```
javax.swing.JLabel lblSubjectList
```
lblSubjects
```
CategoryTitle lblSubjects
```
lblSubjectShapeSet
```
javax.swing.JLabel lblSubjectShapeSet
```
lblSubjectSurfaces
```
javax.swing.JLabel lblSubjectSurfaces
```
lblSubjectVolumes
```
javax.swing.JLabel lblSubjectVolumes
```

lstAtlas

mgui.interfaces.neuro.InterfaceCorticalThicknessPanel.SubjectList lstAtlas

lstAtlasesLeft
```
javax.swing.JScrollPane lstAtlasesLeft
```
lstAtlasesRight
```
javax.swing.JScrollPane lstAtlasesRight
```

lstDataTables

mgui.interfaces.neuro.InterfaceCorticalThicknessPanel.DataTableList lstDataTables

lstSubjects

mgui.interfaces.neuro.InterfaceCorticalThicknessPanel.SubjectList lstSubjects

lstSurfaces

mgui.interfaces.neuro.InterfaceCorticalThicknessPanel.SubjectList lstSurfaces

lstSurfData

mgui.interfaces.neuro.InterfaceCorticalThicknessPanel.SubjectList lstSurfData

lstVolumes

mgui.interfaces.neuro.InterfaceCorticalThicknessPanel.SubjectList lstVolumes

parent_set
```
ShapeSet3DInt parent_set
```
shape_set
```
ShapeSet3DInt shape_set
```
tblAttributes
```
InterfaceAttributePanel tblAttributes
```

Class mgui.interfaces.neuro.InterfaceNetworkTreeNode extends InterfaceTreeNode implements Serializable
Class mgui.interfaces.neuro.InterfaceNeuroTreeNode extends InterfaceTreeNode implements Serializable
Class mgui.interfaces.neuro.NeuralNetEvent extends NetworkEvent implements Serializable
Class mgui.interfaces.neuro.NeuroComponentEvent extends NetworkComponentEvent implements Serializable
- Serialized Fields
  - eventCode
    
    int eventCode

Package mgui.interfaces.neuro.imaging.camino

Class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree extends javax.swing.JTree implements Serializable
- Serialized Fields
  - current_location
    
    java.awt.Point current_location
  - current_popup
    
    CaminoPipelineTree.PopupObject current_popup
Class mgui.interfaces.neuro.imaging.camino.CaminoProcess extends JavaProcess implements Serializable

Class mgui.interfaces.neuro.imaging.camino.CaminoProcessDialogBox extends InterfaceOptionsDialogBox implements Serializable

Serialized Fields

chkLogger
```
javax.swing.JCheckBox chkLogger
```
cmdAddParameter
```
javax.swing.JButton cmdAddParameter
```
cmdRemoveParameter
```
javax.swing.JButton cmdRemoveParameter
```
current_process
```
CaminoProcess current_process
```
lblMainClass
```
javax.swing.JLabel lblMainClass
```
lblName
```
javax.swing.JLabel lblName
```
lblParameters
```
javax.swing.JLabel lblParameters
```

parameter_model

mgui.interfaces.neuro.imaging.camino.CaminoProcessDialogBox.ParameterTableModel parameter_model

scrParameters
```
javax.swing.JScrollPane scrParameters
```
tblParameters
```
javax.swing.JTable tblParameters
```
txtLogger
```
javax.swing.JTextField txtLogger
```
txtMainClass
```
javax.swing.JTextField txtMainClass
```
txtName
```
javax.swing.JTextField txtName
```

Class mgui.interfaces.neuro.imaging.camino.CaminoProjectDialogBox extends InterfaceOptionsTabbedDialogBox implements Serializable

Serialized Fields

chkSubRemFileSystem

javax.swing.JCheckBox chkSubRemFileSystem

cmdMainApply
```
javax.swing.JButton cmdMainApply
```
cmdMainRevert
```
javax.swing.JButton cmdMainRevert
```
cmdMainRootFolder
```
javax.swing.JButton cmdMainRootFolder
```
cmdSubAddSubfolder
```
javax.swing.JButton cmdSubAddSubfolder
```
cmdSubAddSubject
```
javax.swing.JButton cmdSubAddSubject
```

cmdSubAddSubjectList

javax.swing.JButton cmdSubAddSubjectList

cmdSubApply
```
javax.swing.JButton cmdSubApply
```
cmdSubRemSubfolder
```
javax.swing.JButton cmdSubRemSubfolder
```
cmdSubRemSubject
```
javax.swing.JButton cmdSubRemSubject
```
cmdSubRevert
```
javax.swing.JButton cmdSubRevert
```
lblMainName
```
javax.swing.JLabel lblMainName
```
lblMainRootFolder
```
javax.swing.JLabel lblMainRootFolder
```
lblSubjectPrefix
```
javax.swing.JLabel lblSubjectPrefix
```
lblSubSubfolders
```
javax.swing.JLabel lblSubSubfolders
```
lblSubSubjects
```
javax.swing.JLabel lblSubSubjects
```
lstSubSubfolders
```
javax.swing.JList lstSubSubfolders
```
lstSubSubjects
```
javax.swing.JList lstSubSubjects
```

scrSubSubfolders

javax.swing.JScrollPane scrSubSubfolders

scrSubSubjects
```
javax.swing.JScrollPane scrSubSubjects
```

subfolder_model

javax.swing.DefaultListModel subfolder_model

subject_model

javax.swing.DefaultListModel subject_model

txtMainName
```
javax.swing.JTextField txtMainName
```

txtMainRootFolder

javax.swing.JTextField txtMainRootFolder

txtSubjectPrefix
```
javax.swing.JTextField txtSubjectPrefix
```

Class mgui.interfaces.neuro.imaging.camino.CaminoTaskDialogBox extends InterfaceOptionsDialogBox implements Serializable

Serialized Fields

chkInputFile
```
javax.swing.JCheckBox chkInputFile
```
chkInputNone
```
javax.swing.JCheckBox chkInputNone
```
chkInputPrepend
```
javax.swing.JCheckBox chkInputPrepend
```
chkInputPrevious
```
javax.swing.JCheckBox chkInputPrevious
```
chkOutputFile
```
javax.swing.JCheckBox chkOutputFile
```
chkOutputPrepend
```
javax.swing.JCheckBox chkOutputPrepend
```
cmbProcess
```
javax.swing.JComboBox cmbProcess
```
cmdDefineProcesses
```
javax.swing.JButton cmdDefineProcesses
```
cmdInputFile
```
javax.swing.JButton cmdInputFile
```
cmdOutputFile
```
javax.swing.JButton cmdOutputFile
```

current_instance

PipelineProcessInstance current_instance

lblParameters
```
javax.swing.JLabel lblParameters
```
lblProcess
```
javax.swing.JLabel lblProcess
```

parameter_model

mgui.interfaces.neuro.imaging.camino.CaminoTaskDialogBox.ParameterTableModel parameter_model

scrParameters
```
javax.swing.JScrollPane scrParameters
```
tblParameters
```
javax.swing.JTable tblParameters
```
txtInputFile
```
javax.swing.JTextField txtInputFile
```
txtOutputFile
```
javax.swing.JTextField txtOutputFile
```
update_combo
```
boolean update_combo
```

Class mgui.interfaces.neuro.imaging.camino.InterfaceCaminoPanel extends InterfacePanel implements Serializable

Serialized Fields

chkPipelineAllSubjects

javax.swing.JCheckBox chkPipelineAllSubjects

chkPipelineFailOnException

javax.swing.JCheckBox chkPipelineFailOnException

chkPipelineNoSubjects

javax.swing.JCheckBox chkPipelineNoSubjects

chkPipelineParallel

javax.swing.JCheckBox chkPipelineParallel

chkPipelineSelSubjects

javax.swing.JCheckBox chkPipelineSelSubjects

chkPipelineSerial
```
javax.swing.JCheckBox chkPipelineSerial
```
cmbCommand
```
javax.swing.JComboBox cmbCommand
```
cmdCommandExec
```
javax.swing.JButton cmdCommandExec
```

cmdEnvironmentAddProcess

javax.swing.JButton cmdEnvironmentAddProcess

cmdEnvironmentEditProcess

javax.swing.JButton cmdEnvironmentEditProcess

cmdEnvironmentInitFile

javax.swing.JButton cmdEnvironmentInitFile

cmdEnvironmentUpdate

javax.swing.JButton cmdEnvironmentUpdate

cmdPipelineLaunch
```
javax.swing.JButton cmdPipelineLaunch
```
cmdPipelineLoad
```
javax.swing.JButton cmdPipelineLoad
```
cmdPipelineNew
```
javax.swing.JButton cmdPipelineNew
```

cmdPipelineProcessAdd

javax.swing.JButton cmdPipelineProcessAdd

cmdPipelineProcessDown

javax.swing.JButton cmdPipelineProcessDown

cmdPipelineProcessEdit

javax.swing.JButton cmdPipelineProcessEdit

cmdPipelineProcessRem

javax.swing.JButton cmdPipelineProcessRem

cmdPipelineProcessUp

javax.swing.JButton cmdPipelineProcessUp

cmdPipelineRem
```
javax.swing.JButton cmdPipelineRem
```
cmdPipelineReset
```
javax.swing.JButton cmdPipelineReset
```
cmdPipelineSave
```
javax.swing.JButton cmdPipelineSave
```
cmdProjectEdit
```
javax.swing.JButton cmdProjectEdit
```
cmdProjectNew
```
javax.swing.JButton cmdProjectNew
```
cmdProjectOpen
```
javax.swing.JButton cmdProjectOpen
```
cmdProjectRem
```
javax.swing.JButton cmdProjectRem
```
cmdProjectSave
```
javax.swing.JButton cmdProjectSave
```
cmdProjectSelect
```
javax.swing.JButton cmdProjectSelect
```
cmdSubjectsAdd
```
javax.swing.JButton cmdSubjectsAdd
```
cmdSubjectsRem
```
javax.swing.JButton cmdSubjectsRem
```
currentProject
```
CaminoProject currentProject
```
lblCommand
```
javax.swing.JLabel lblCommand
```
lblCommandArgs
```
javax.swing.JLabel lblCommandArgs
```
lblCommandLine
```
CategoryTitle lblCommandLine
```
lblEnvironment
```
CategoryTitle lblEnvironment
```

lblEnvironmentInitFile

javax.swing.JLabel lblEnvironmentInitFile

lblEnvironmentProcesses

javax.swing.JLabel lblEnvironmentProcesses

lblEnvironmentUpdate
```
javax.swing.JLabel lblEnvironmentUpdate
```
lblPipelineAddRem
```
javax.swing.JLabel lblPipelineAddRem
```
lblPipelinePipelines
```
javax.swing.JLabel lblPipelinePipelines
```

lblPipelineProcessAddRem

javax.swing.JLabel lblPipelineProcessAddRem

lblPipelines
```
CategoryTitle lblPipelines
```
lblPipelineSubjects
```
javax.swing.JLabel lblPipelineSubjects
```
lblProject
```
CategoryTitle lblProject
```
lblSubjects
```
CategoryTitle lblSubjects
```

lstEnvironmentProcesses

javax.swing.JList lstEnvironmentProcesses

lstProjects
```
javax.swing.JList lstProjects
```
lstSubjects
```
javax.swing.JList lstSubjects
```

process_model

javax.swing.DefaultListModel process_model

project_model

javax.swing.DefaultListModel project_model

projects

java.util.ArrayList<CaminoProject> projects

scrCommandArgs
```
javax.swing.JScrollPane scrCommandArgs
```

scrEnvironmentProcesses

javax.swing.JScrollPane scrEnvironmentProcesses

scrPipelines
```
javax.swing.JScrollPane scrPipelines
```
scrProjects
```
javax.swing.JScrollPane scrProjects
```
scrSubjects
```
javax.swing.JScrollPane scrSubjects
```

subject_model

javax.swing.DefaultListModel subject_model

treePipelines
```
CaminoPipelineTree treePipelines
```
txtCommandArgs
```
javax.swing.JTextArea txtCommandArgs
```

txtEnvironmentInitFile

javax.swing.JTextField txtEnvironmentInitFile

Package mgui.interfaces.pipelines

Class mgui.interfaces.pipelines.InterfacePipelinesPanel extends InterfacePanel implements Serializable

serialVersionUID:: -3560533997426865226L

Serialized Fields

chkPipelineParallelInstances

javax.swing.JCheckBox chkPipelineParallelInstances

chkPipelineSerialInstances

javax.swing.JCheckBox chkPipelineSerialInstances

chkPipelineSingle
```
javax.swing.JCheckBox chkPipelineSingle
```
chkProjectAssign
```
javax.swing.JCheckBox chkProjectAssign
```
cmbGeneralPipeline
```
InterfaceComboBox cmbGeneralPipeline
```
cmbProcessesLibrary
```
InterfaceComboBox cmbProcessesLibrary
```
cmbProjectCurrent
```
InterfaceComboBox cmbProjectCurrent
```

cmdGeneralCreateEdit

javax.swing.JButton cmdGeneralCreateEdit

cmdGeneralDelete
```
javax.swing.JButton cmdGeneralDelete
```
cmdGeneralLoad
```
javax.swing.JButton cmdGeneralLoad
```
cmdGeneralRoot
```
javax.swing.JButton cmdGeneralRoot
```
cmdGeneralSave
```
javax.swing.JButton cmdGeneralSave
```
cmdPipelineAppend
```
javax.swing.JButton cmdPipelineAppend
```
cmdPipelineDelete
```
javax.swing.JButton cmdPipelineDelete
```
cmdPipelineEdit
```
javax.swing.JButton cmdPipelineEdit
```
cmdPipelineInsert
```
javax.swing.JButton cmdPipelineInsert
```
cmdPipelineLaunch
```
javax.swing.JButton cmdPipelineLaunch
```
cmdPipelineLoad
```
javax.swing.JButton cmdPipelineLoad
```
cmdPipelineSave
```
javax.swing.JButton cmdPipelineSave
```

cmdPipelineStopReset

javax.swing.JButton cmdPipelineStopReset

cmdProcessesAdd
```
javax.swing.JButton cmdProcessesAdd
```
cmdProcessesEdit
```
javax.swing.JButton cmdProcessesEdit
```
cmdProcessesHelp
```
javax.swing.JButton cmdProcessesHelp
```

cmdProcessesLibraryAdd

javax.swing.JButton cmdProcessesLibraryAdd

cmdProcessesLibraryEnvironment

javax.swing.JButton cmdProcessesLibraryEnvironment

cmdProcessesLibraryLoad

javax.swing.JButton cmdProcessesLibraryLoad

cmdProcessesLibraryRemove

javax.swing.JButton cmdProcessesLibraryRemove

cmdProcessesLibraryRename

javax.swing.JButton cmdProcessesLibraryRename

cmdProcessesLibrarySave

javax.swing.JButton cmdProcessesLibrarySave

cmdProcessesRemove
```
javax.swing.JButton cmdProcessesRemove
```

cmdProjectDeselectInstance

javax.swing.JButton cmdProjectDeselectInstance

cmdProjectSelectAll
```
javax.swing.JButton cmdProjectSelectAll
```

cmdProjectSelectFilter

javax.swing.JButton cmdProjectSelectFilter

cmdProjectSelectInstance

javax.swing.JButton cmdProjectSelectInstance

cmdProjectSelectNone

javax.swing.JButton cmdProjectSelectNone

current_pipeline
```
InterfacePipeline current_pipeline
```
current_project
```
InterfaceProject current_project
```
current_root
```
java.io.File current_root
```
doUpdate
```
boolean doUpdate
```

executing_pipelines

java.util.HashMap<InterfacePipeline,PipelineLauncher> executing_pipelines

instances_list
```
javax.swing.JTable instances_list
```

instances_table_model

mgui.interfaces.pipelines.InterfacePipelinesPanel.InstancesTableModel instances_table_model

lblGeneral
```
CategoryTitle lblGeneral
```
lblGeneralPipeline
```
javax.swing.JLabel lblGeneralPipeline
```
lblGeneralRoot
```
javax.swing.JLabel lblGeneralRoot
```
lblPipeline
```
CategoryTitle lblPipeline
```
lblProcesses
```
CategoryTitle lblProcesses
```
lblProcessesLibrary
```
javax.swing.JLabel lblProcessesLibrary
```

lblProcessesProcesses

javax.swing.JLabel lblProcessesProcesses

lblProject
```
CategoryTitle lblProject
```
lblProjectCurrent
```
javax.swing.JLabel lblProjectCurrent
```
lblProjectInstances
```
javax.swing.JLabel lblProjectInstances
```
pipeline_tree
```
PipelineTree pipeline_tree
```
processes_list
```
javax.swing.JList processes_list
```

processes_list_model

javax.swing.DefaultListModel processes_list_model

scrPipelineTree
```
javax.swing.JScrollPane scrPipelineTree
```

scrProcessesList

javax.swing.JScrollPane scrProcessesList

scrProjectInstances

javax.swing.JScrollPane scrProjectInstances

serial_launch_instances

java.util.HashMap<InterfacePipeline,mgui.interfaces.pipelines.InterfacePipelinesPanel.SerialPipelineLaunchInstance> serial_launch_instances

Class mgui.interfaces.pipelines.PipelineProcessDialogBox extends InterfaceOptionsDialogBox implements Serializable

Serialized Fields

cmbType
```
javax.swing.JComboBox cmbType
```
cmdAddParameter
```
javax.swing.JButton cmdAddParameter
```
cmdParameterDown
```
javax.swing.JButton cmdParameterDown
```
cmdParameterUp
```
javax.swing.JButton cmdParameterUp
```
cmdRemoveParameter
```
javax.swing.JButton cmdRemoveParameter
```
current_process
```
PipelineProcess current_process
```
doUpdate
```
boolean doUpdate
```
lblHelpParam
```
javax.swing.JLabel lblHelpParam
```
lblInputParam
```
javax.swing.JLabel lblInputParam
```
lblMainClass
```
javax.swing.JLabel lblMainClass
```
lblName
```
javax.swing.JLabel lblName
```
lblOutputParam
```
javax.swing.JLabel lblOutputParam
```
lblParameters
```
javax.swing.JLabel lblParameters
```
lblPath
```
javax.swing.JLabel lblPath
```
lblSetChar
```
javax.swing.JLabel lblSetChar
```
lblType
```
javax.swing.JLabel lblType
```

parameter_model

mgui.interfaces.pipelines.PipelineProcessDialogBox.ParameterTableModel parameter_model

scrParameters
```
javax.swing.JScrollPane scrParameters
```
tblParameters
```
javax.swing.JTable tblParameters
```
txtHelpParam
```
javax.swing.JTextField txtHelpParam
```
txtInputParam
```
javax.swing.JTextField txtInputParam
```
txtMainClass
```
javax.swing.JTextField txtMainClass
```
txtName
```
javax.swing.JTextField txtName
```
txtOutputParam
```
javax.swing.JTextField txtOutputParam
```
txtPath
```
javax.swing.JTextField txtPath
```
txtSetChar
```
javax.swing.JTextField txtSetChar
```

Class mgui.interfaces.pipelines.PipelineProcessInstanceDialogBox extends InterfaceOptionsDialogBox implements Serializable

Serialized Fields

chkInputFile
```
javax.swing.JCheckBox chkInputFile
```
chkInputNone
```
javax.swing.JCheckBox chkInputNone
```
chkInputPrepend
```
javax.swing.JCheckBox chkInputPrepend
```
chkInputPrevious
```
javax.swing.JCheckBox chkInputPrevious
```
chkOutputFile
```
javax.swing.JCheckBox chkOutputFile
```
chkOutputPrepend
```
javax.swing.JCheckBox chkOutputPrepend
```
cmbLibrary
```
InterfaceComboBox cmbLibrary
```
cmbProcess
```
InterfaceComboBox cmbProcess
```
cmdDefineProcesses
```
javax.swing.JButton cmdDefineProcesses
```
cmdInputFile
```
javax.swing.JButton cmdInputFile
```
cmdOutputFile
```
javax.swing.JButton cmdOutputFile
```

current_instance

PipelineProcessInstance current_instance

is_ok
```
boolean is_ok
```
lblLibrary
```
javax.swing.JLabel lblLibrary
```
lblParameters
```
javax.swing.JLabel lblParameters
```
lblProcess
```
javax.swing.JLabel lblProcess
```

parameter_model

mgui.interfaces.pipelines.PipelineProcessInstanceDialogBox.ParameterTableModel parameter_model

scrParameters
```
javax.swing.JScrollPane scrParameters
```
tblParameters
```
javax.swing.JTable tblParameters
```
txtInputFile
```
javax.swing.JTextField txtInputFile
```
txtOutputFile
```
javax.swing.JTextField txtOutputFile
```
update_combo
```
boolean update_combo
```

Package mgui.interfaces.pipelines.trees
- Class mgui.interfaces.pipelines.trees.PipelineTree extends javax.swing.JTree implements Serializable
  - Serialized Fields
    
    current_location
    
    java.awt.Point current_location
    
    current_popup
    
    PipelineTree.PopupObject current_popup
    
    model
    
    javax.swing.tree.DefaultTreeModel model
    
    parameter_font
    
    java.awt.Font parameter_font
    
    root_font
    
    java.awt.Font root_font
- Class mgui.interfaces.pipelines.trees.PipelineTreeTransferHandler extends javax.swing.TransferHandler implements Serializable
  - Serialized Fields
    
    source_task
    
    PipelineTask source_task
    
    target_pipeline
    
    InterfacePipeline target_pipeline
    
    target_task
    
    PipelineTask target_task
    
    transferable
    
    java.awt.datatransfer.Transferable transferable
- Class mgui.interfaces.pipelines.trees.TaskTreeNode extends InterfaceTreeNode implements Serializable
  - Serialized Fields
    
    listeners
    
    java.util.Vector<TaskTreeNodeListener> listeners
    
    model
    
    javax.swing.tree.DefaultTreeModel model
    
    tree
    
    PipelineTree tree
- Class mgui.interfaces.pipelines.trees.TaskTreeNodeEvent extends java.util.EventObject implements Serializable
Package mgui.interfaces.plots
- Class mgui.interfaces.plots.InterfacePlot extends InterfacePanel implements Serializable
  - Serialized Fields
    
    icon
    
    javax.swing.Icon icon
    
    inputs
    
    java.util.ArrayList<DataInputStream<T extends MguiNumber>> inputs
    
    isDestroyed
    
    boolean isDestroyed
    
    relay_listeners
    
    java.util.ArrayList<MouseRelayListener> relay_listeners
    
    treeNode
    
    InterfaceTreeNode treeNode
- Class mgui.interfaces.plots.InterfacePlotDialog extends InterfaceOptionsDialogBox implements Serializable
  - Serialized Fields
    
    scrSourceTree
    
    javax.swing.JScrollPane scrSourceTree
    
    source_tree
    
    InterfaceTreePanel source_tree
- Class mgui.interfaces.plots.InterfacePlotDisplay extends InterfaceGraphic<ToolPlot> implements Serializable
  - Serialized Fields
    
    current_plot
    
    InterfacePlot<?> current_plot
    
    mouse_relay_listener
    
    MouseRelayListener mouse_relay_listener
- Class mgui.interfaces.plots.InterfacePlotMulti extends InterfacePlot<MguiNumber> implements Serializable
  - Serialized Fields
    
    plots
    
    java.util.ArrayList<InterfacePlot<?>> plots
- Class mgui.interfaces.plots.InterfacePlotPanel extends InterfacePanel implements Serializable
  - Serialized Fields
    
    lblOrigin
    
    CategoryTitle lblOrigin
- Class mgui.interfaces.plots.NewPlotDialog extends InterfaceDialogBox implements Serializable
  - Serialized Fields
    
    lblChoose
    
    javax.swing.JLabel lblChoose
    
    new_plot
    
    InterfacePlot<?> new_plot
    
    scrTypeList
    
    javax.swing.JScrollPane scrTypeList
    
    type_list
    
    javax.swing.JList type_list
    
    type_model
    
    mgui.interfaces.plots.NewPlotDialog.TypeModel type_model
- Class mgui.interfaces.plots.PlotException extends java.lang.Exception implements Serializable
- Class mgui.interfaces.plots.PlotInputException extends PlotException implements Serializable
Package mgui.interfaces.plots.mgui
- Class mgui.interfaces.plots.mgui.InterfacePlotMgui extends InterfacePlot<MguiDouble> implements Serializable
- Class mgui.interfaces.plots.mgui.MatrixImagePlot extends InterfacePlotMgui implements Serializable
  - Serialized Fields
    
    data_source
    
    MatrixPlotDataSource data_source
    
    image
    
    java.awt.image.BufferedImage image
- Class mgui.interfaces.plots.mgui.MguiPlotEvent extends java.util.EventObject implements Serializable
Package mgui.interfaces.plots.osp
- Class mgui.interfaces.plots.osp.InterfacePlotOsp extends InterfacePlot<MguiDouble> implements Serializable
  - Serialized Fields
    
    plottingPanel
    
    org.opensourcephysics.display.PlottingPanel plottingPanel
- Class mgui.interfaces.plots.osp.InterfaceStripChart extends InterfacePlotOsp implements Serializable
  - Serialized Fields
    
    plots
    
    java.util.ArrayList<org.opensourcephysics.display.Stripchart> plots
    
    variables
    
    java.util.ArrayList<InterfaceStripChart.Variable> variables

Package mgui.interfaces.plots.sgt

Class mgui.interfaces.plots.sgt.InterfacePlotSgt extends InterfacePlot<MguiDouble> implements Serializable

Serialized Fields

last_added
```
SgtPlotObject<?> last_added
```
last_modified
```
SgtPlotObject<?> last_modified
```
last_removed
```
SgtPlotObject<?> last_removed
```

objects

java.util.HashMap<java.lang.String,T extends SgtPlotObject<?>> objects

plot_layout

SgtPlotLayout<T extends SgtPlotObject<?>,?,?> plot_layout

Class mgui.interfaces.plots.sgt.SgtCartesianLayout extends SgtPlotLayout<T extends SgtPlotObject<?>,gov.noaa.pmel.sgt.CartesianGraph,gov.noaa.pmel.sgt.PlainAxis> implements Serializable
- Serialized Fields
  - base_x
    
    java.lang.String base_x
    
    Names for the base X and Y axes
  - base_y
    
    java.lang.String base_y
    
    Names for the base X and Y axes
Class mgui.interfaces.plots.sgt.SgtLineLayout extends SgtCartesianLayout<SgtLine> implements Serializable

Class mgui.interfaces.plots.sgt.SgtMultilinePlot extends InterfacePlotSgt<SgtLine> implements Serializable

Serialized Fields

data_source

PlotTimeSeriesDataSource<MguiDouble> data_source

x
```
java.util.ArrayList<MguiDouble> x
```

y

java.util.ArrayList<java.util.ArrayList<MguiDouble>> y

Class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog extends InterfacePlotDialog<SgtMultilinePlot> implements Serializable

Serialized Fields

cmdAddY
```
javax.swing.JButton cmdAddY
```
cmdKeepY
```
javax.swing.JButton cmdKeepY
```
cmdRemoveY
```
javax.swing.JButton cmdRemoveY
```
cmdSetX
```
javax.swing.JButton cmdSetX
```
lblTitle
```
javax.swing.JLabel lblTitle
```
lblXData
```
javax.swing.JLabel lblXData
```
lblYData
```
javax.swing.JLabel lblYData
```
plot
```
SgtMultilinePlot plot
```
scrYData
```
javax.swing.JScrollPane scrYData
```
txtTitle
```
javax.swing.JTextField txtTitle
```
txtXData
```
javax.swing.JTextField txtXData
```

y_model

SgtMultilinePlotDialog.YTableModel y_model

y_table
```
javax.swing.JTable y_table
```

Class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog.YTableModel extends javax.swing.table.AbstractTableModel implements Serializable

Serialized Fields

colours

java.util.ArrayList<Attribute<java.awt.Color>> colours

select

java.util.ArrayList<Attribute<MguiBoolean>> select

strokes

java.util.ArrayList<Attribute<java.awt.Stroke>> strokes

titles

java.util.ArrayList<Attribute<java.lang.String>> titles

variables

java.util.ArrayList<Attribute<java.lang.String>> variables

Class mgui.interfaces.plots.sgt.SgtPlotEvent extends java.util.EventObject implements Serializable

Class mgui.interfaces.plots.sgt.SgtPlotLayout extends gov.noaa.pmel.sgt.JPane implements Serializable

Serialized Fields

attributes
```
AttributeList attributes
```
auto_interval_x
```
int auto_interval_x
```
auto_interval_y
```
int auto_interval_y
```
auto_range_x
```
boolean auto_range_x
```
auto_range_y
```
boolean auto_range_y
```

axis_map

java.util.HashMap<java.lang.String,SgtAxis<A extends gov.noaa.pmel.sgt.Axis>> axis_map

base_layer
```
java.lang.String base_layer
```

data_attributes

java.util.HashMap<gov.noaa.pmel.sgt.dm.SGTData,gov.noaa.pmel.sgt.Attribute> data_attributes

data_collection

gov.noaa.pmel.sgt.dm.Collection data_collection

graph_map

java.util.HashMap<java.lang.String,gov.noaa.pmel.sgt.Graph> graph_map

graph_type
```
SgtPlotLayout.GraphType graph_type
```
is_destroyed
```
boolean is_destroyed
```

layers

java.util.HashMap<java.lang.String,gov.noaa.pmel.sgt.Layer> layers

object_key
```
gov.noaa.pmel.sgt.DataKey object_key
```

object_map

java.util.HashMap<java.lang.String,SgtPlotObject<?>> object_map

rev_axis_x
```
boolean rev_axis_x
```
rev_axis_y
```
boolean rev_axis_y
```

treeNodes

java.util.ArrayList<InterfaceTreeNode> treeNodes

Class mgui.interfaces.plots.sgt.SgtPointSetLayout extends SgtCartesianLayout<SgtPointSet> implements Serializable
Class mgui.interfaces.plots.sgt.SgtScatterplot extends InterfacePlotSgt<SgtPointSet> implements Serializable
- Serialized Fields
  - data_source
    
    PlotXYDataSource<MguiDouble> data_source
  - xy
    
    java.util.HashMap<java.lang.String,java.util.List<XYData<MguiDouble>>> xy

Class mgui.interfaces.plots.sgt.SgtScatterPlotDialog extends InterfacePlotDialog<SgtScatterplot> implements Serializable

Serialized Fields

cmdAddData
```
javax.swing.JButton cmdAddData
```
cmdKeep
```
javax.swing.JButton cmdKeep
```
cmdRemove
```
javax.swing.JButton cmdRemove
```
cmdSetX
```
javax.swing.JButton cmdSetX
```
cmdSetY
```
javax.swing.JButton cmdSetY
```
lblTitle
```
javax.swing.JLabel lblTitle
```
plot
```
SgtScatterplot plot
```
scrXYData
```
javax.swing.JScrollPane scrXYData
```
title_x
```
java.lang.String title_x
```
title_y
```
java.lang.String title_y
```
txtTitle
```
javax.swing.JTextField txtTitle
```
txtXData
```
javax.swing.JTextField txtXData
```
txtYData
```
javax.swing.JTextField txtYData
```

xy_model

SgtScatterPlotDialog.XYTableModel xy_model

xy_table
```
javax.swing.JTable xy_table
```

Class mgui.interfaces.plots.sgt.SgtScatterPlotDialog.XYTableModel extends javax.swing.table.AbstractTableModel implements Serializable

Serialized Fields

colours

java.util.ArrayList<Attribute<java.awt.Color>> colours

select

java.util.ArrayList<Attribute<MguiBoolean>> select

strokes

java.util.ArrayList<Attribute<java.awt.Stroke>> strokes

titles

java.util.ArrayList<Attribute<java.lang.String>> titles

variables_x

java.util.ArrayList<Attribute<java.lang.String>> variables_x

variables_y

java.util.ArrayList<Attribute<java.lang.String>> variables_y

Package mgui.interfaces.projects

Class mgui.interfaces.projects.InterfaceProjectDialogBox extends InterfaceOptionsTabbedDialogBox implements Serializable

Serialized Fields

chkAllowFSUpdate
```
javax.swing.JCheckBox chkAllowFSUpdate
```

chkSubRemFileSystem

javax.swing.JCheckBox chkSubRemFileSystem

cmbIconType
```
InterfaceComboBox cmbIconType
```
cmdMainApply
```
javax.swing.JButton cmdMainApply
```
cmdMainRevert
```
javax.swing.JButton cmdMainRevert
```
cmdMainRootFolder
```
javax.swing.JButton cmdMainRootFolder
```
cmdSubAddInstance
```
javax.swing.JButton cmdSubAddInstance
```

cmdSubAddInstanceList

javax.swing.JButton cmdSubAddInstanceList

cmdSubAddSubfolder
```
javax.swing.JButton cmdSubAddSubfolder
```
cmdSubApply
```
javax.swing.JButton cmdSubApply
```

cmdSubDefineSubfolder

javax.swing.JButton cmdSubDefineSubfolder

cmdSubRemInstance
```
javax.swing.JButton cmdSubRemInstance
```
cmdSubRemSubfolder
```
javax.swing.JButton cmdSubRemSubfolder
```
cmdSubRevert
```
javax.swing.JButton cmdSubRevert
```
current_project
```
InterfaceProject current_project
```

instance_model

javax.swing.DefaultListModel<ProjectInstance> instance_model

lblIconType
```
javax.swing.JLabel lblIconType
```
lblInstanceFolder
```
javax.swing.JLabel lblInstanceFolder
```
lblMainName
```
javax.swing.JLabel lblMainName
```
lblMainRootFolder
```
javax.swing.JLabel lblMainRootFolder
```
lblProjectFolder
```
javax.swing.JLabel lblProjectFolder
```
lblSubInstances
```
javax.swing.JLabel lblSubInstances
```
lblSubjectPrefix
```
javax.swing.JLabel lblSubjectPrefix
```
lblSubSubfolders
```
javax.swing.JLabel lblSubSubfolders
```
lstSubInstances
```
javax.swing.JList lstSubInstances
```
lstSubSubfolders
```
javax.swing.JList lstSubSubfolders
```
scrSubInstances
```
javax.swing.JScrollPane scrSubInstances
```

scrSubSubfolders

javax.swing.JScrollPane scrSubSubfolders

subfolder_model

javax.swing.DefaultListModel<ProjectDirectory> subfolder_model

txtInstanceFolder

javax.swing.JTextField txtInstanceFolder

txtMainName
```
javax.swing.JTextField txtMainName
```

txtMainRootFolder

javax.swing.JTextField txtMainRootFolder

txtProjectFolder
```
javax.swing.JTextField txtProjectFolder
```
txtSubjectPrefix
```
javax.swing.JTextField txtSubjectPrefix
```

Class mgui.interfaces.projects.InterfaceProjectPanel extends InterfacePanel implements Serializable

serialVersionUID:: 8467914691198300633L

Serialized Fields

cmbProjectCurrent
```
InterfaceComboBox cmbProjectCurrent
```
cmbUtilitiesProcess
```
InterfaceComboBox cmbUtilitiesProcess
```

cmdProjectCreateEdit

javax.swing.JButton cmdProjectCreateEdit

cmdProjectDelete
```
javax.swing.JButton cmdProjectDelete
```
cmdProjectRoot
```
javax.swing.JButton cmdProjectRoot
```
cmdUtilitiesExecute
```
javax.swing.JButton cmdUtilitiesExecute
```
current_project
```
InterfaceProject current_project
```
lblDatabase
```
CategoryTitle lblDatabase
```
lblDataItems
```
CategoryTitle lblDataItems
```
lblFileStructure
```
CategoryTitle lblFileStructure
```
lblProject
```
CategoryTitle lblProject
```
lblProjectCurrent
```
javax.swing.JLabel lblProjectCurrent
```
lblProjectRoot
```
javax.swing.JLabel lblProjectRoot
```
lblUtilities
```
CategoryTitle lblUtilities
```
lblUtilitiesProcess
```
javax.swing.JLabel lblUtilitiesProcess
```
txtProjectRoot
```
javax.swing.JTextField txtProjectRoot
```

Class mgui.interfaces.projects.ProjectDirectoryDialogBox extends InterfaceOptionsDialogBox implements Serializable

Serialized Fields

cmdAddItem
```
javax.swing.JButton cmdAddItem
```
cmdRemoveItems
```
javax.swing.JButton cmdRemoveItems
```
data_items_table
```
javax.swing.JTable data_items_table
```
lblDataItems
```
javax.swing.JLabel lblDataItems
```
lstDataItems
```
javax.swing.JScrollPane lstDataItems
```

table_model

mgui.interfaces.projects.ProjectDirectoryDialogBox.DataItemTableModel table_model

Class mgui.interfaces.projects.ProjectIOException extends java.io.IOException implements Serializable

Package mgui.interfaces.projects.util

Class mgui.interfaces.projects.util.ConsolidateDirectoriesDialogBox extends InterfaceOptionsDialogBox implements Serializable

serialVersionUID:: -4525437733636496559L

Serialized Fields

chkOverwrite
```
javax.swing.JCheckBox chkOverwrite
```
chkPrefix
```
javax.swing.JCheckBox chkPrefix
```
chkRetainOrig
```
javax.swing.JCheckBox chkRetainOrig
```
chkSuffix
```
javax.swing.JCheckBox chkSuffix
```
cmdAddSource
```
javax.swing.JButton cmdAddSource
```
cmdRemoveSource
```
javax.swing.JButton cmdRemoveSource
```
cmdSetTarget
```
javax.swing.JButton cmdSetTarget
```
current_progress
```
InterfaceProgressBar current_progress
```
current_target
```
java.io.File current_target
```
lblDirectories
```
javax.swing.JLabel lblDirectories
```
lblTarget
```
javax.swing.JLabel lblTarget
```

list_model

mgui.interfaces.projects.util.ConsolidateDirectoriesDialogBox.ListModel list_model

lstDirectories
```
javax.swing.JList lstDirectories
```
scrDirectories
```
javax.swing.JScrollPane scrDirectories
```
txtPrefix
```
javax.swing.JTextField txtPrefix
```
txtSuffix
```
javax.swing.JTextField txtSuffix
```
txtTarget
```
javax.swing.JTextField txtTarget
```

Package mgui.interfaces.queries
- Class mgui.interfaces.queries.InterfaceQueryPanel extends InterfacePanel implements Serializable
  - Serialized Fields
    
    chkResultsClear
    
    javax.swing.JCheckBox chkResultsClear
    
    cmdQueryNew
    
    javax.swing.JButton cmdQueryNew
    
    cmdQueryRemove
    
    javax.swing.JButton cmdQueryRemove
    
    cmdQueryStartStop
    
    javax.swing.JButton cmdQueryStartStop
    
    current_query
    
    InterfaceQuery current_query
    
    current_query_tool_2d
    
    ToolQueryShape2D current_query_tool_2d
    
    current_query_tool_3d
    
    ToolQueryShape3D current_query_tool_3d
    
    lblQueries
    
    CategoryTitle lblQueries
    
    lblQueryQueries
    
    javax.swing.JLabel lblQueryQueries
    
    lblResults
    
    CategoryTitle lblResults
    
    lblResultsWidth
    
    javax.swing.JLabel lblResultsWidth
    
    lstQueryQueries
    
    javax.swing.JList lstQueryQueries
    
    previous_tool_3d
    
    Tool3D previous_tool_3d
    
    queries_list_model
    
    javax.swing.DefaultListModel queries_list_model
    
    root_node
    
    javax.swing.tree.DefaultMutableTreeNode root_node
    
    scrQueryQueries
    
    javax.swing.JScrollPane scrQueryQueries
    
    scrResults
    
    javax.swing.JScrollPane scrResults
    
    treeResults
    
    javax.swing.JTree treeResults
    
    txtResultsWidth
    
    javax.swing.JTextField txtResultsWidth
- Class mgui.interfaces.queries.ObjectNotQueriableException extends java.lang.Exception implements Serializable
- Class mgui.interfaces.queries.QueryEvent extends java.util.EventObject implements Serializable
- Class mgui.interfaces.queries.QueryResultPanel extends javax.swing.JScrollPane implements Serializable
  - Serialized Fields
    
    max_property_chars
    
    int max_property_chars
    
    text_area
    
    javax.swing.JTextArea text_area
Package mgui.interfaces.queries.tables
- Class mgui.interfaces.queries.tables.QueryResultTable extends javax.swing.JPanel implements Serializable
  - Serialized Fields
    
    line_height
    
    int line_height
    
    line_width
    
    int line_width
    
    model
    
    QueryResultTableModel model
    
    table
    
    javax.swing.JTable table
    
    variable_width
    
    boolean variable_width
- Class mgui.interfaces.queries.tables.QueryResultTableModel extends javax.swing.table.AbstractTableModel implements Serializable
  - Serialized Fields
    
    result
    
    QueryResult result
- Class mgui.interfaces.queries.tables.QueryResultTableTreeEditor extends javax.swing.AbstractCellEditor implements Serializable
  - Serialized Fields
    
    last_component
    
    java.awt.Component last_component
    
    renderer
    
    QueryResultTableTreeRenderer renderer
- Class mgui.interfaces.queries.tables.QueryResultTableTreeRenderer extends InterfaceTreeCellRenderer implements Serializable
  - Serialized Fields
    
    column_model
    
    javax.swing.table.TableColumnModel column_model

Package mgui.interfaces.shapes

Class mgui.interfaces.shapes.InterfacePolygonPanel extends InterfacePanel implements Serializable

Serialized Fields

chkAll
```
javax.swing.JCheckBox chkAll
```
chkAllSets
```
javax.swing.JCheckBox chkAllSets
```
chkCurrentSet
```
javax.swing.JCheckBox chkCurrentSet
```

chkMergeRemoveExisting

javax.swing.JCheckBox chkMergeRemoveExisting

chkSel
```
javax.swing.JCheckBox chkSel
```
cmbCurrentPolygon
```
javax.swing.JComboBox cmbCurrentPolygon
```
cmdMerge
```
javax.swing.JButton cmdMerge
```
lblMerge
```
CategoryTitle lblMerge
```
lblPolygons
```
CategoryTitle lblPolygons
```

Class mgui.interfaces.shapes.InterfaceSectionSetPanel extends InterfacePanel implements Serializable

Serialized Fields

attrSectionDetails

InterfaceAttributePanel attrSectionDetails

attrSetDetails
```
InterfaceAttributePanel attrSetDetails
```
blnItemListen
```
boolean blnItemListen
```
chkAxisZ_flip
```
javax.swing.JCheckBox chkAxisZ_flip
```

clip_planes

java.util.ArrayList<ClipPlane> clip_planes

CMB_SECTIONS
```
java.lang.String CMB_SECTIONS
```
CMB_WINDOWS
```
java.lang.String CMB_WINDOWS
```
cmbSectionSet
```
InterfaceComboBox cmbSectionSet
```
cmbSelectedWindow
```
InterfaceComboBox cmbSelectedWindow
```
cmbUpdateSet
```
InterfaceComboBox cmbUpdateSet
```
cmbUpdateShapeSet
```
InterfaceComboBox cmbUpdateShapeSet
```
CMD_NEXT
```
java.lang.String CMD_NEXT
```
CMD_NEXT_SUB
```
java.lang.String CMD_NEXT_SUB
```
CMD_PREV
```
java.lang.String CMD_PREV
```
CMD_PREV_SUB
```
java.lang.String CMD_PREV_SUB
```
CMD_REF
```
java.lang.String CMD_REF
```
CMD_REF_SUB
```
java.lang.String CMD_REF_SUB
```
CMD_ROTX
```
java.lang.String CMD_ROTX
```
CMD_ROTY
```
java.lang.String CMD_ROTY
```
CMD_ROTZ
```
java.lang.String CMD_ROTZ
```
CMD_UPDATE
```
java.lang.String CMD_UPDATE
```
cmdDefX
```
javax.swing.JButton cmdDefX
```
cmdDefY
```
javax.swing.JButton cmdDefY
```
cmdDefZ
```
javax.swing.JButton cmdDefZ
```
cmdDelete
```
javax.swing.JButton cmdDelete
```
cmdNextSection
```
javax.swing.JButton cmdNextSection
```
cmdPrevSection
```
javax.swing.JButton cmdPrevSection
```
cmdRefSection
```
javax.swing.JButton cmdRefSection
```
cmdRotX
```
javax.swing.JButton cmdRotX
```
cmdRotY
```
javax.swing.JButton cmdRotY
```
cmdRotZ
```
javax.swing.JButton cmdRotZ
```
cmdUpdate
```
javax.swing.JButton cmdUpdate
```
currentSet
```
SectionSet3DInt currentSet
```
currentWindow
```
InterfaceGraphicWindow currentWindow
```

ihpSectionDetails

InterfaceHideablePanel ihpSectionDetails

ihpSetDetails
```
InterfaceHideablePanel ihpSetDetails
```
isDestroyed
```
boolean isDestroyed
```
lblAxisX
```
javax.swing.JLabel lblAxisX
```
lblAxisX_X
```
javax.swing.JLabel lblAxisX_X
```
lblAxisX_Y
```
javax.swing.JLabel lblAxisX_Y
```
lblAxisX_Z
```
javax.swing.JLabel lblAxisX_Z
```
lblAxisY
```
javax.swing.JLabel lblAxisY
```
lblAxisY_X
```
javax.swing.JLabel lblAxisY_X
```
lblAxisY_Y
```
javax.swing.JLabel lblAxisY_Y
```
lblAxisY_Z
```
javax.swing.JLabel lblAxisY_Z
```
lblAxisZ
```
javax.swing.JLabel lblAxisZ
```
lblAxisZ_X
```
javax.swing.JLabel lblAxisZ_X
```
lblAxisZ_Y
```
javax.swing.JLabel lblAxisZ_Y
```
lblAxisZ_Z
```
javax.swing.JLabel lblAxisZ_Z
```
lblCurrentSection
```
javax.swing.JLabel lblCurrentSection
```
lblNewUpdate
```
CategoryTitle lblNewUpdate
```
lblOrigin
```
javax.swing.JLabel lblOrigin
```
lblOriginX
```
javax.swing.JLabel lblOriginX
```
lblOriginY
```
javax.swing.JLabel lblOriginY
```
lblOriginZ
```
javax.swing.JLabel lblOriginZ
```
lblRotation
```
javax.swing.JLabel lblRotation
```
lblSections
```
CategoryTitle lblSections
```
lblSectionSet
```
javax.swing.JLabel lblSectionSet
```
lblSelectedWindow
```
javax.swing.JLabel lblSelectedWindow
```
lblUpdateName
```
javax.swing.JLabel lblUpdateName
```
lblUpdateSet
```
javax.swing.JLabel lblUpdateSet
```
lblUpdateShapeSet
```
javax.swing.JLabel lblUpdateShapeSet
```
lblUpdateSpacing
```
javax.swing.JLabel lblUpdateSpacing
```
lblWindows
```
CategoryTitle lblWindows
```
NEW_SET
```
java.lang.String NEW_SET
```
sectionAttr
```
AttributeList sectionAttr
```
showSubsections
```
boolean showSubsections
```
TXT_SECT
```
java.lang.String TXT_SECT
```
txtAxisX_X
```
javax.swing.JTextField txtAxisX_X
```
txtAxisX_Y
```
javax.swing.JTextField txtAxisX_Y
```
txtAxisX_Z
```
javax.swing.JTextField txtAxisX_Z
```
txtAxisY_X
```
javax.swing.JTextField txtAxisY_X
```
txtAxisY_Y
```
javax.swing.JTextField txtAxisY_Y
```
txtAxisY_Z
```
javax.swing.JTextField txtAxisY_Z
```
txtAxisZ_X
```
javax.swing.JTextField txtAxisZ_X
```
txtAxisZ_Y
```
javax.swing.JTextField txtAxisZ_Y
```
txtAxisZ_Z
```
javax.swing.JTextField txtAxisZ_Z
```

txtCurrentSection

javax.swing.JTextField txtCurrentSection

txtOriginX
```
javax.swing.JTextField txtOriginX
```
txtOriginY
```
javax.swing.JTextField txtOriginY
```
txtOriginZ
```
javax.swing.JTextField txtOriginZ
```
txtRotation
```
javax.swing.JTextField txtRotation
```
txtUpdateName
```
javax.swing.JTextField txtUpdateName
```
txtUpdateSpacing
```
javax.swing.JTextField txtUpdateSpacing
```
updateSet
```
SectionSet3DInt updateSet
```

Class mgui.interfaces.shapes.InterfaceShapesPanel extends InterfacePanel implements Serializable

Serialized Fields

barScaledColourBar
```
ContinuousColourBar barScaledColourBar
```
MISC STUFF
chkCurrentAll
```
javax.swing.JCheckBox chkCurrentAll
```
chkCurrentSet
```
javax.swing.JCheckBox chkCurrentSet
```

chkDataOperationsSelected

javax.swing.JCheckBox chkDataOperationsSelected

chkDataTransferSelected

javax.swing.JCheckBox chkDataTransferSelected

chkHistUseCurrent
```
javax.swing.JCheckBox chkHistUseCurrent
```

cmbConvexHullMethod

javax.swing.JComboBox<java.lang.String> cmbConvexHullMethod

cmbCurrentSet
```
javax.swing.JComboBox cmbCurrentSet
```
cmbCurrentShape
```
InterfaceComboBox cmbCurrentShape
```

cmbDataDisplayColourMap

InterfaceComboBox cmbDataDisplayColourMap

cmbDataDisplayColumn
```
InterfaceComboBox cmbDataDisplayColumn
```

cmbDataOperationsTarget

InterfaceComboBox cmbDataOperationsTarget

cmbDataSourcesLinkColumn

InterfaceComboBox cmbDataSourcesLinkColumn

cmbDataTransferInput

javax.swing.JComboBox cmbDataTransferInput

cmbDataTransferOperation

javax.swing.JComboBox cmbDataTransferOperation

cmbDataTransferShape
```
InterfaceComboBox cmbDataTransferShape
```
cmbDataTransferTarget
```
InterfaceComboBox cmbDataTransferTarget
```

cmbDataTransferType

javax.swing.JComboBox cmbDataTransferType

cmbHistColumn
```
InterfaceComboBox cmbHistColumn
```
cmbNameMap
```
InterfaceComboBox cmbNameMap
```
cmbNameMapColumn
```
InterfaceComboBox cmbNameMapColumn
```

cmbNormalizeMethod

javax.swing.JComboBox<java.lang.String> cmbNormalizeMethod

cmbTransformMethod

javax.swing.JComboBox<java.lang.String> cmbTransformMethod

cmbVertexSelectionConcat

javax.swing.JComboBox cmbVertexSelectionConcat

cmbVertexSelectionOp

javax.swing.JComboBox cmbVertexSelectionOp

cmbVolumeMethod

javax.swing.JComboBox<?> cmbVolumeMethod

cmbVolumeSource
```
InterfaceComboBox cmbVolumeSource
```
cmdApplyDataDisplay
```
javax.swing.JButton cmdApplyDataDisplay
```
cmdConvexHullApply
```
javax.swing.JButton cmdConvexHullApply
```

cmdDataOperationsApply

javax.swing.JButton cmdDataOperationsApply

cmdDataOperationsCreate

javax.swing.JButton cmdDataOperationsCreate

cmdDataOperationsDefine

javax.swing.JButton cmdDataOperationsDefine

cmdDataSourcesAddLink

javax.swing.JButton cmdDataSourcesAddLink

cmdDataSourcesEditLink

javax.swing.JButton cmdDataSourcesEditLink

cmdDataSourcesRemoveLink

javax.swing.JButton cmdDataSourcesRemoveLink

cmdDataTransferApply

javax.swing.JButton cmdDataTransferApply

cmdDataTransferCreate

javax.swing.JButton cmdDataTransferCreate

cmdDataTransferOptions

javax.swing.JButton cmdDataTransferOptions

cmdHistCalc
```
javax.swing.JButton cmdHistCalc
```
cmdHistReset
```
javax.swing.JButton cmdHistReset
```
cmdNormalize
```
javax.swing.JButton cmdNormalize
```
cmdNormalizeApply
```
javax.swing.JButton cmdNormalizeApply
```
cmdResetDataDisplay
```
javax.swing.JButton cmdResetDataDisplay
```
cmdTransformApply
```
javax.swing.JButton cmdTransformApply
```

cmdVertexSelectionAdd

javax.swing.JButton cmdVertexSelectionAdd

cmdVertexSelectionApply

javax.swing.JButton cmdVertexSelectionApply

cmdVertexSelectionClear

javax.swing.JButton cmdVertexSelectionClear

cmdVertexSelectionRemove

javax.swing.JButton cmdVertexSelectionRemove

cmdVolume
```
javax.swing.JButton cmdVolume
```
current_column
```
java.lang.String current_column
```
current_selection
```
ShapeSelectionSet current_selection
```
current_shape
```
InterfaceShape current_shape
```
currentDataSource
```
DataSource currentDataSource
```
currentDataTable
```
DataTable currentDataTable
```
currentLinkField
```
DataField currentLinkField
```

data_sources_model

mgui.interfaces.shapes.InterfaceShapesPanel.DataLinkTableModel data_sources_model

data_transfer_shape
```
InterfaceShape data_transfer_shape
```
doUpdate
```
boolean doUpdate
```
lblConvexHull
```
CategoryTitle lblConvexHull
```
lblConvexHullMethod
```
javax.swing.JLabel lblConvexHullMethod
```

lblConvexHullParameters

javax.swing.JLabel lblConvexHullParameters

lblCurrentShape
```
javax.swing.JLabel lblCurrentShape
```
lblDataDisplay
```
CategoryTitle lblDataDisplay
```

lblDataDisplayColourMap

javax.swing.JLabel lblDataDisplayColourMap

lblDataDisplayColumn
```
javax.swing.JLabel lblDataDisplayColumn
```
lblDataMax
```
javax.swing.JLabel lblDataMax
```
lblDataMin
```
javax.swing.JLabel lblDataMin
```
lblDataOperations
```
CategoryTitle lblDataOperations
```

lblDataOperationsTarget

javax.swing.JLabel lblDataOperationsTarget

lblDataSources
```
CategoryTitle lblDataSources
```

lblDataSourcesLinkColumn

javax.swing.JLabel lblDataSourcesLinkColumn

lblDataSourcesLinks
```
javax.swing.JLabel lblDataSourcesLinks
```
lblDataTransfer
```
CategoryTitle lblDataTransfer
```
lblDataTransferData
```
javax.swing.JLabel lblDataTransferData
```
lblDataTransferInput
```
javax.swing.JLabel lblDataTransferInput
```

lblDataTransferOperation

javax.swing.JLabel lblDataTransferOperation

lblDataTransferShape
```
javax.swing.JLabel lblDataTransferShape
```
lblDataTransferType
```
javax.swing.JLabel lblDataTransferType
```
lblHistBins
```
javax.swing.JLabel lblHistBins
```
lblHistColumn
```
javax.swing.JLabel lblHistColumn
```
lblHistMax
```
javax.swing.JLabel lblHistMax
```
lblHistMin
```
javax.swing.JLabel lblHistMin
```
lblHistogram
```
CategoryTitle lblHistogram
```
lblHistYScale
```
javax.swing.JLabel lblHistYScale
```
lblNameMap
```
javax.swing.JLabel lblNameMap
```
lblNameMapColumn
```
javax.swing.JLabel lblNameMapColumn
```
lblNameMaps
```
CategoryTitle lblNameMaps
```
lblNormalize
```
CategoryTitle lblNormalize
```
lblNormalizeMethod
```
javax.swing.JLabel lblNormalizeMethod
```

lblNormalizeParameters

javax.swing.JLabel lblNormalizeParameters

lblShapes
```
CategoryTitle lblShapes
```
lblTransform
```
CategoryTitle lblTransform
```
lblTransformMethod
```
javax.swing.JLabel lblTransformMethod
```

lblTransformParameters

javax.swing.JLabel lblTransformParameters

lblVertexSelect
```
javax.swing.JLabel lblVertexSelect
```
lblVertexSelection
```
CategoryTitle lblVertexSelection
```

lblVertexSelectionConcat

javax.swing.JLabel lblVertexSelectionConcat

lblVertexSelectionOp
```
javax.swing.JLabel lblVertexSelectionOp
```
lblVolume
```
CategoryTitle lblVolume
```
lblVolumeMethod
```
javax.swing.JLabel lblVolumeMethod
```
lblVolumeName
```
javax.swing.JLabel lblVolumeName
```
lblVolumeParameters
```
javax.swing.JLabel lblVolumeParameters
```
lblVolumeSource
```
javax.swing.JLabel lblVolumeSource
```

math_expression_options

MathExpressionOptions math_expression_options

mesh_expression_dialog

MathExpressionDialogBox mesh_expression_dialog

operation_expression_options

MathExpressionOptions operation_expression_options

pnlConvexHull
```
InterfaceAttributePanel pnlConvexHull
```
pnlHistPanel
```
HistogramPlot pnlHistPanel
```
pnlNormalize
```
InterfaceAttributePanel pnlNormalize
```
pnlTransform
```
InterfaceAttributePanel pnlTransform
```

scrDataSourcesLinks

javax.swing.JScrollPane scrDataSourcesLinks

scrVertexSelection

javax.swing.JScrollPane scrVertexSelection

shape_engine
```
ShapeEngine shape_engine
```
sldHistYScale
```
javax.swing.JSlider sldHistYScale
```
tblDataSourcesLinks
```
javax.swing.JTable tblDataSourcesLinks
```
txtDataMax
```
javax.swing.JTextField txtDataMax
```
txtDataMin
```
javax.swing.JTextField txtDataMin
```
txtHistBins
```
javax.swing.JTextField txtHistBins
```
txtHistMax
```
javax.swing.JTextField txtHistMax
```
txtHistMin
```
javax.swing.JTextField txtHistMin
```
txtHistYScale
```
javax.swing.JTextField txtHistYScale
```
txtVolumeName
```
javax.swing.JTextField txtVolumeName
```

vertex_selection_model

InterfaceShapesPanel.VertexSelectionTableModel vertex_selection_model

vertex_selection_table

javax.swing.JTable vertex_selection_table

volumeAttr
```
InterfaceAttributePanel volumeAttr
```

Class mgui.interfaces.shapes.InterfaceShapesPanel.VertexSelectionTableModel extends javax.swing.table.AbstractTableModel implements Serializable
- Serialized Fields
  - comparison
    
    java.util.ArrayList<java.lang.String> comparison
  - values
    
    java.util.ArrayList<java.lang.String> values
  - variables
    
    java.util.ArrayList<java.lang.String> variables
Class mgui.interfaces.shapes.ShapeModelEvent extends java.util.EventObject implements Serializable

serialVersionUID:

7726940386266127068L
- Serialized Fields
  - type
    
    ShapeModelEvent.EventType type

Class mgui.interfaces.shapes.ShapeStatsPanel extends InterfacePanel implements Serializable

Serialized Fields

chkCurrentAll
```
javax.swing.JCheckBox chkCurrentAll
```
chkCurrentSet
```
javax.swing.JCheckBox chkCurrentSet
```
chkCurrentShape
```
javax.swing.JCheckBox chkCurrentShape
```
cmbCurrentSet
```
javax.swing.JComboBox cmbCurrentSet
```
cmbCurrentShape
```
javax.swing.JComboBox cmbCurrentShape
```
cmbRPlaneShapeSet
```
javax.swing.JComboBox cmbRPlaneShapeSet
```
cmbRPlaneType
```
javax.swing.JComboBox cmbRPlaneType
```
cmdRPlaneCreate
```
javax.swing.JButton cmdRPlaneCreate
```
cmdRPlaneOptions
```
javax.swing.JButton cmdRPlaneOptions
```
current_selection
```
ShapeSelectionSet current_selection
```
current_shape
```
InterfaceShape current_shape
```
doUpdate
```
boolean doUpdate
```
MISC STUFF
lblRPlane
```
CategoryTitle lblRPlane
```
lblRPlaneShapeSet
```
javax.swing.JLabel lblRPlaneShapeSet
```
lblRPlaneType
```
javax.swing.JLabel lblRPlaneType
```
lblShapes
```
CategoryTitle lblShapes
```

Class mgui.interfaces.shapes.VertexDataColumnEvent extends java.util.EventObject implements Serializable
- Serialized Fields
  - type
    
    VertexDataColumnEvent.EventType type

Package mgui.interfaces.shapes.datasources

Class mgui.interfaces.shapes.datasources.DataSourceLinkDialogBox extends InterfaceOptionsDialogBox implements Serializable

Serialized Fields

chkNameMap
```
javax.swing.JCheckBox chkNameMap
```
cmbDataSource
```
javax.swing.JComboBox cmbDataSource
```
cmbDataTable
```
javax.swing.JComboBox cmbDataTable
```
cmbLinkField
```
javax.swing.JComboBox cmbLinkField
```
data_column
```
VertexDataColumn data_column
```
data_link_name
```
java.lang.String data_link_name
```
doUpdate
```
boolean doUpdate
```
lblDataSource
```
javax.swing.JLabel lblDataSource
```
lblDataTable
```
javax.swing.JLabel lblDataTable
```
lblLinkField
```
javax.swing.JLabel lblLinkField
```
lblName
```
javax.swing.JLabel lblName
```
txtName
```
javax.swing.JTextField txtName
```

Package mgui.interfaces.shapes.graphs
- Class mgui.interfaces.shapes.graphs.Graph2DInt.RenderServer extends edu.uci.ics.jung.visualization.BasicVisualizationServer<AbstractGraphNode,AbstractGraphEdge> implements Serializable
  - Serialized Fields
    
    current_size
    
    java.awt.Dimension current_size

Package mgui.interfaces.shapes.mesh

Class mgui.interfaces.shapes.mesh.InterfaceMeshPanel extends InterfacePanel implements Serializable

Serialized Fields

barScaledColourBar
```
ContinuousColourBar barScaledColourBar
```
chkAll
```
javax.swing.JCheckBox chkAll
```
chkMeshPartsData
```
javax.swing.JCheckBox chkMeshPartsData
```

chkMeshPartsShapeSet

javax.swing.JCheckBox chkMeshPartsShapeSet

chkMultiFileInputEmDir

javax.swing.JCheckBox chkMultiFileInputEmDir

chkMultiFileOutputEmDir

javax.swing.JCheckBox chkMultiFileOutputEmDir

chkMultiFileOutputInput

javax.swing.JCheckBox chkMultiFileOutputInput

chkSel
```
javax.swing.JCheckBox chkSel
```
chkSelSet
```
javax.swing.JCheckBox chkSelSet
```
chkSubmeshCreate
```
javax.swing.JCheckBox chkSubmeshCreate
```
chkSubmeshData
```
javax.swing.JCheckBox chkSubmeshData
```
chkSubmeshMask
```
javax.swing.JCheckBox chkSubmeshMask
```
chkSubmeshRemove
```
javax.swing.JCheckBox chkSubmeshRemove
```
chkSubmeshRetain
```
javax.swing.JCheckBox chkSubmeshRetain
```

chkSubmeshSelected

javax.swing.JCheckBox chkSubmeshSelected

cmbCurrentMesh
```
InterfaceComboBox cmbCurrentMesh
```
cmbCurrentSet
```
javax.swing.JComboBox cmbCurrentSet
```

cmbCurvatureMethod

javax.swing.JComboBox cmbCurvatureMethod

cmbDecimateMethod
```
javax.swing.JComboBox cmbDecimateMethod
```
cmbInflateMethod
```
javax.swing.JComboBox cmbInflateMethod
```

cmbMesh2VolumeMethod

javax.swing.JComboBox cmbMesh2VolumeMethod

cmbMesh2VolumeName

javax.swing.JComboBox cmbMesh2VolumeName

cmbMesh2VolumeSource
```
InterfaceComboBox cmbMesh2VolumeSource
```

cmbMultiFileFormat

javax.swing.JComboBox cmbMultiFileFormat

cmbRoisMethod
```
javax.swing.JComboBox cmbRoisMethod
```

cmbSmoothingMethod

javax.swing.JComboBox cmbSmoothingMethod

cmbSubdivideMethod

javax.swing.JComboBox cmbSubdivideMethod

cmbSubmeshMask
```
javax.swing.JComboBox cmbSubmeshMask
```
cmbValidateMesh2
```
InterfaceComboBox cmbValidateMesh2
```
cmbValidateOp
```
javax.swing.JComboBox cmbValidateOp
```
cmbVolumeMethod
```
javax.swing.JComboBox cmbVolumeMethod
```
cmbVolumeSource
```
InterfaceComboBox cmbVolumeSource
```
cmdCurvature
```
javax.swing.JButton cmdCurvature
```
cmdDecimate
```
javax.swing.JButton cmdDecimate
```
cmdInflate
```
javax.swing.JButton cmdInflate
```
cmdMesh2Volume
```
javax.swing.JButton cmdMesh2Volume
```
cmdMeshParts
```
javax.swing.JButton cmdMeshParts
```
cmdMultiFileAddOp
```
javax.swing.JButton cmdMultiFileAddOp
```
cmdMultiFileExecute
```
javax.swing.JButton cmdMultiFileExecute
```

cmdMultiFileInputDir

javax.swing.JButton cmdMultiFileInputDir

cmdMultiFileInputEmDir

javax.swing.JButton cmdMultiFileInputEmDir

cmdMultiFileOutputDir

javax.swing.JButton cmdMultiFileOutputDir

cmdMultiFileOutputEmDir

javax.swing.JButton cmdMultiFileOutputEmDir

cmdMultiFileRemOp
```
javax.swing.JButton cmdMultiFileRemOp
```
cmdRois
```
javax.swing.JButton cmdRois
```
cmdSmooth
```
javax.swing.JButton cmdSmooth
```
cmdSubdivide
```
javax.swing.JButton cmdSubdivide
```
cmdSubmesh
```
javax.swing.JButton cmdSubmesh
```
cmdValidate
```
javax.swing.JButton cmdValidate
```
cmdVolume
```
javax.swing.JButton cmdVolume
```

current_validate_panel

mgui.interfaces.shapes.mesh.InterfaceMeshPanel.SubPanel current_validate_panel

currentDataSource
```
DataSource currentDataSource
```
currentDataTable
```
DataTable currentDataTable
```
currentLinkField
```
DataField currentLinkField
```
currentMesh
```
Mesh3DInt currentMesh
```
curvatureAttr
```
InterfaceAttributePanel curvatureAttr
```
dataOpsMesh
```
Mesh3DInt dataOpsMesh
```
decimateAttr
```
InterfaceAttributePanel decimateAttr
```
doUpdate
```
boolean doUpdate
```
inflateAttr
```
InterfaceAttributePanel inflateAttr
```
lblCurvature
```
CategoryTitle lblCurvature
```
lblCurvatureMethod
```
javax.swing.JLabel lblCurvatureMethod
```
lblDecimateMethod
```
javax.swing.JLabel lblDecimateMethod
```

lblDecimateParameters

javax.swing.JLabel lblDecimateParameters

lblDecimation
```
CategoryTitle lblDecimation
```
lblInflateMethod
```
javax.swing.JLabel lblInflateMethod
```
lblInflateParameters
```
javax.swing.JLabel lblInflateParameters
```
lblInflation
```
CategoryTitle lblInflation
```
lblMesh2Volume
```
CategoryTitle lblMesh2Volume
```
lblMesh2VolumeMethod
```
javax.swing.JLabel lblMesh2VolumeMethod
```
lblMesh2VolumeName
```
javax.swing.JLabel lblMesh2VolumeName
```

lblMesh2VolumeParameters

javax.swing.JLabel lblMesh2VolumeParameters

lblMesh2VolumeSource
```
javax.swing.JLabel lblMesh2VolumeSource
```
lblMeshes
```
CategoryTitle lblMeshes
```
lblMeshParts
```
CategoryTitle lblMeshParts
```
lblMultiFile
```
CategoryTitle lblMultiFile
```
lblMultiFileFormat
```
javax.swing.JLabel lblMultiFileFormat
```
lblMultiFileInputDir
```
javax.swing.JLabel lblMultiFileInputDir
```

lblMultiFileInputMask

javax.swing.JLabel lblMultiFileInputMask

lblMultiFileOperations

javax.swing.JLabel lblMultiFileOperations

lblMultiFileOutputDir

javax.swing.JLabel lblMultiFileOutputDir

lblMultiFileOutputMask

javax.swing.JLabel lblMultiFileOutputMask

lblRois
```
CategoryTitle lblRois
```
lblRoisMethod
```
javax.swing.JLabel lblRoisMethod
```
lblRoisParameters
```
javax.swing.JLabel lblRoisParameters
```
lblSmoothing
```
CategoryTitle lblSmoothing
```
lblSmoothingMethod
```
javax.swing.JLabel lblSmoothingMethod
```
lblSmoothParameters
```
javax.swing.JLabel lblSmoothParameters
```
lblSubdivideMethod
```
javax.swing.JLabel lblSubdivideMethod
```

lblSubdivideParameters

javax.swing.JLabel lblSubdivideParameters

lblSubdivision
```
CategoryTitle lblSubdivision
```
lblSubmesh
```
CategoryTitle lblSubmesh
```
lblSubmeshValue
```
javax.swing.JLabel lblSubmeshValue
```
lblValidate
```
CategoryTitle lblValidate
```
lblValidateOp
```
javax.swing.JLabel lblValidateOp
```
lblVolume
```
CategoryTitle lblVolume
```
lblVolumeMethod
```
javax.swing.JLabel lblVolumeMethod
```
lblVolumeName
```
javax.swing.JLabel lblVolumeName
```
lblVolumeParameters
```
javax.swing.JLabel lblVolumeParameters
```
lblVolumeSource
```
javax.swing.JLabel lblVolumeSource
```

lstMultiFileOperations

mgui.interfaces.shapes.mesh.InterfaceMeshPanel.WindowList lstMultiFileOperations

maskDataOptions
```
MeshDataMaskOptions maskDataOptions
```
maskPlaneOptions
```
MeshPlaneMaskOptions maskPlaneOptions
```

math_expression_options

MathExpressionOptions math_expression_options

mesh_expression_dialog

MathExpressionDialogBox mesh_expression_dialog

mesh2VolumeAttr
```
InterfaceAttributePanel mesh2VolumeAttr
```
meshEngine
```
MeshEngine meshEngine
```
roisAttr
```
InterfaceAttributePanel roisAttr
```
smoothAttr
```
InterfaceAttributePanel smoothAttr
```
subdivideAttr
```
InterfaceAttributePanel subdivideAttr
```

thresholdDataOptions

MeshDataThresholdOptions thresholdDataOptions

txtMeshPartsShapeSet

javax.swing.JTextField txtMeshPartsShapeSet

txtMultiFileInputDir

javax.swing.JTextField txtMultiFileInputDir

txtMultiFileInputEmDir

javax.swing.JTextField txtMultiFileInputEmDir

txtMultiFileInputMask

javax.swing.JTextField txtMultiFileInputMask

txtMultiFileOutputDir

javax.swing.JTextField txtMultiFileOutputDir

txtMultiFileOutputEmDir

javax.swing.JTextField txtMultiFileOutputEmDir

txtMultiFileOutputMask

javax.swing.JTextField txtMultiFileOutputMask

txtSubmeshCreate
```
javax.swing.JTextField txtSubmeshCreate
```
txtSubmeshValue
```
javax.swing.JTextField txtSubmeshValue
```
txtVolumeName
```
javax.swing.JTextField txtVolumeName
```

validate_panels

java.util.HashMap<java.lang.String,mgui.interfaces.shapes.mesh.InterfaceMeshPanel.SubPanel> validate_panels

volumeAttr
```
InterfaceAttributePanel volumeAttr
```

Class mgui.interfaces.shapes.mesh.MeshDataMaskOptionsDialog extends InterfaceOptionsDialogBox implements Serializable

Serialized Fields

chkNames
```
javax.swing.JCheckBox chkNames
```
chkVals
```
javax.swing.JCheckBox chkVals
```
cmbNameMaps
```
javax.swing.JComboBox cmbNameMaps
```
doUpdate
```
boolean doUpdate
```
lblIn
```
javax.swing.JLabel lblIn
```
lblOut
```
javax.swing.JLabel lblOut
```
lineLayout
```
LineLayout lineLayout
```
list
```
javax.swing.JList list
```
listModel
```
javax.swing.DefaultListModel listModel
```
lstNames
```
javax.swing.JScrollPane lstNames
```
selModel
```
javax.swing.ListSelectionModel selModel
```
txtIn
```
javax.swing.JTextField txtIn
```
txtOut
```
javax.swing.JTextField txtOut
```
txtVals
```
javax.swing.JTextField txtVals
```

Class mgui.interfaces.shapes.mesh.MeshDataThresholdOptionsDialog extends InterfaceOptionsDialogBox implements Serializable

Serialized Fields

chkMax
```
javax.swing.JCheckBox chkMax
```
chkMin
```
javax.swing.JCheckBox chkMin
```
doUpdate
```
boolean doUpdate
```
lblMidVal
```
javax.swing.JLabel lblMidVal
```
lblSubVal
```
javax.swing.JLabel lblSubVal
```
lblSuperVal
```
javax.swing.JLabel lblSuperVal
```
lineLayout
```
LineLayout lineLayout
```
txtMax
```
javax.swing.JTextField txtMax
```
txtMidVal
```
javax.swing.JTextField txtMidVal
```
txtMin
```
javax.swing.JTextField txtMin
```
txtSubVal
```
javax.swing.JTextField txtSubVal
```
txtSuperVal
```
javax.swing.JTextField txtSuperVal
```
updater
```
InterfaceDialogUpdater updater
```

Class mgui.interfaces.shapes.mesh.MeshPlaneMaskOptionsDialog extends InterfaceOptionsDialogBox implements Serializable

Serialized Fields

cmbSectionSet
```
javax.swing.JComboBox cmbSectionSet
```
lblAbove
```
javax.swing.JLabel lblAbove
```
lblBelow
```
javax.swing.JLabel lblBelow
```
lblSection
```
javax.swing.JLabel lblSection
```
lblSectionSet
```
javax.swing.JLabel lblSectionSet
```
txtAbove
```
javax.swing.JTextField txtAbove
```
txtBelow
```
javax.swing.JTextField txtBelow
```
txtSection
```
javax.swing.JTextField txtSection
```

Class mgui.interfaces.shapes.mesh.MeshSubmeshOptionsDialog extends InterfaceOptionsDialogBox implements Serializable

Package mgui.interfaces.shapes.neuro

Class mgui.interfaces.shapes.neuro.InterfaceNeuroMeshPanel extends InterfacePanel implements Serializable

Serialized Fields

chkScalpGaussian
```
javax.swing.JCheckBox chkScalpGaussian
```

cmbScalpBrainSurface

javax.swing.JComboBox cmbScalpBrainSurface

cmbScalpMask
```
javax.swing.JComboBox cmbScalpMask
```

cmbScalpSectionSet

javax.swing.JComboBox cmbScalpSectionSet

cmbScalpShapeSet
```
javax.swing.JComboBox cmbScalpShapeSet
```
cmbScalpT1Volume
```
javax.swing.JComboBox cmbScalpT1Volume
```
cmdGaussian
```
javax.swing.JButton cmdGaussian
```
cmdScalpExecute
```
javax.swing.JButton cmdScalpExecute
```
cmdSphere
```
javax.swing.JButton cmdSphere
```
lblGaussian
```
javax.swing.JLabel lblGaussian
```

lblGaussianGaussianCutoff

javax.swing.JLabel lblGaussianGaussianCutoff

lblGaussianSigmaNormal

javax.swing.JLabel lblGaussianSigmaNormal

lblGaussianSigmaTangent

javax.swing.JLabel lblGaussianSigmaTangent

lblScalpBrainSurface
```
javax.swing.JLabel lblScalpBrainSurface
```

lblScalpGaussianCutoff

javax.swing.JLabel lblScalpGaussianCutoff

lblScalpMask
```
javax.swing.JLabel lblScalpMask
```
lblScalpMinDistB_IS
```
javax.swing.JLabel lblScalpMinDistB_IS
```
lblScalpMinDistOS_S
```
javax.swing.JLabel lblScalpMinDistOS_S
```
lblScalpMinSlope
```
javax.swing.JLabel lblScalpMinSlope
```
lblScalpPlane
```
javax.swing.JLabel lblScalpPlane
```
lblScalpSample
```
javax.swing.JLabel lblScalpSample
```
lblScalpSectionPlane
```
javax.swing.JLabel lblScalpSectionPlane
```
lblScalpSectionSet
```
javax.swing.JLabel lblScalpSectionSet
```
lblScalpShapeSet
```
javax.swing.JLabel lblScalpShapeSet
```
lblScalpSigmaNormal
```
javax.swing.JLabel lblScalpSigmaNormal
```
lblScalpSigmaTangent
```
javax.swing.JLabel lblScalpSigmaTangent
```
lblScalpSkull
```
CategoryTitle lblScalpSkull
```
lblScalpSphereN
```
javax.swing.JLabel lblScalpSphereN
```
lblScalpT1Volume
```
javax.swing.JLabel lblScalpT1Volume
```
lblScalpThreshold
```
javax.swing.JLabel lblScalpThreshold
```

lblScalpThresholdDist

javax.swing.JLabel lblScalpThresholdDist

lblSphere
```
javax.swing.JLabel lblSphere
```
lblSphereCenter
```
javax.swing.JLabel lblSphereCenter
```
lblSphereN
```
javax.swing.JLabel lblSphereN
```
lblSphereName
```
javax.swing.JLabel lblSphereName
```
lblSphereRadius
```
javax.swing.JLabel lblSphereRadius
```
lblTests
```
CategoryTitle lblTests
```

txtGaussianGaussianCutoff

javax.swing.JTextField txtGaussianGaussianCutoff

txtGaussianSigmaNormal

javax.swing.JTextField txtGaussianSigmaNormal

txtGaussianSigmaTangent

javax.swing.JTextField txtGaussianSigmaTangent

txtScalpGaussianCutoff

javax.swing.JTextField txtScalpGaussianCutoff

txtScalpMinDistB_IS

javax.swing.JTextField txtScalpMinDistB_IS

txtScalpMinDistOS_S

javax.swing.JTextField txtScalpMinDistOS_S

txtScalpMinSlope
```
javax.swing.JTextField txtScalpMinSlope
```
txtScalpSample
```
javax.swing.JTextField txtScalpSample
```

txtScalpSectionPlane

javax.swing.JTextField txtScalpSectionPlane

txtScalpSigmaNormal

javax.swing.JTextField txtScalpSigmaNormal

txtScalpSigmaTangent

javax.swing.JTextField txtScalpSigmaTangent

txtScalpSphereN
```
javax.swing.JTextField txtScalpSphereN
```

txtScalpThreshold

javax.swing.JTextField txtScalpThreshold

txtScalpThresholdDist

javax.swing.JTextField txtScalpThresholdDist

txtSphereCenter_x

javax.swing.JTextField txtSphereCenter_x

txtSphereCenter_y

javax.swing.JTextField txtSphereCenter_y

txtSphereCenter_z

javax.swing.JTextField txtSphereCenter_z

txtSphereN
```
javax.swing.JTextField txtSphereN
```
txtSphereName
```
javax.swing.JTextField txtSphereName
```
txtSphereRadius
```
javax.swing.JTextField txtSphereRadius
```
update_combos
```
boolean update_combos
```

Class mgui.interfaces.shapes.neuro.InterfaceNeuroMeshPanel2 extends InterfacePanel implements Serializable

Serialized Fields

average_points_file
```
java.io.File average_points_file
```
chkControlAverage
```
javax.swing.JCheckBox chkControlAverage
```
chkControlShapes
```
javax.swing.JCheckBox chkControlShapes
```
chkControlSubject
```
javax.swing.JCheckBox chkControlSubject
```

chkCortexToVolumeFixedThickness

javax.swing.JCheckBox chkCortexToVolumeFixedThickness

chkCortexToVolumeThickness

javax.swing.JCheckBox chkCortexToVolumeThickness

chkEdgesIslands
```
javax.swing.JCheckBox chkEdgesIslands
```

chkMeshesGenerateControls

javax.swing.JCheckBox chkMeshesGenerateControls

chkRaysShapes
```
javax.swing.JCheckBox chkRaysShapes
```

chkVolumeToCortexFixedThickness

javax.swing.JCheckBox chkVolumeToCortexFixedThickness

chkVolumeToCortexThickness

javax.swing.JCheckBox chkVolumeToCortexThickness

cmbCortexToVolumeGrid
```
InterfaceComboBox cmbCortexToVolumeGrid
```

cmbCortexToVolumeName

javax.swing.JComboBox cmbCortexToVolumeName

cmbCortexToVolumeSurface

InterfaceComboBox cmbCortexToVolumeSurface

cmbCortexToVolumeThickness

InterfaceComboBox cmbCortexToVolumeThickness

cmbEdgesColumn
```
javax.swing.JComboBox cmbEdgesColumn
```
cmbEdgesMesh
```
javax.swing.JComboBox cmbEdgesMesh
```
cmbMaskHull
```
javax.swing.JComboBox cmbMaskHull
```
cmbShapeSet
```
javax.swing.JComboBox cmbShapeSet
```
cmbT1Image
```
javax.swing.JComboBox cmbT1Image
```
cmbVolumeToCortexGrid
```
InterfaceComboBox cmbVolumeToCortexGrid
```

cmbVolumeToCortexSurface

InterfaceComboBox cmbVolumeToCortexSurface

cmbVolumeToCortexThickness

InterfaceComboBox cmbVolumeToCortexThickness

cmdControlAverage
```
javax.swing.JButton cmdControlAverage
```
cmdControlPts
```
javax.swing.JButton cmdControlPts
```
cmdCortexToVolume
```
javax.swing.JButton cmdCortexToVolume
```
cmdEdgesFix
```
javax.swing.JButton cmdEdgesFix
```
cmdEdgesShow
```
javax.swing.JButton cmdEdgesShow
```
cmdMeshes
```
javax.swing.JButton cmdMeshes
```
cmdOptions
```
javax.swing.JButton cmdOptions
```
cmdRays
```
javax.swing.JButton cmdRays
```
cmdResetAll
```
javax.swing.JButton cmdResetAll
```
cmdVolumeToCortex
```
javax.swing.JButton cmdVolumeToCortex
```
control_points
```
int[][] control_points
```

cortexToVolumeAttr

InterfaceAttributePanel cortexToVolumeAttr

engine
```
NeuroMeshEngine engine
```
lblControlPrefix
```
javax.swing.JLabel lblControlPrefix
```
lblControlPts
```
CategoryTitle lblControlPts
```
lblCortexToVolume
```
CategoryTitle lblCortexToVolume
```

lblCortexToVolumeGrid

javax.swing.JLabel lblCortexToVolumeGrid

lblCortexToVolumeName

javax.swing.JLabel lblCortexToVolumeName

lblCortexToVolumeParameters

javax.swing.JLabel lblCortexToVolumeParameters

lblCortexToVolumeSurface

javax.swing.JLabel lblCortexToVolumeSurface

lblEdgesColumn
```
javax.swing.JLabel lblEdgesColumn
```
lblEdgesMaxNbr
```
javax.swing.JLabel lblEdgesMaxNbr
```
lblEdgesMesh
```
javax.swing.JLabel lblEdgesMesh
```
lblFixEdges
```
CategoryTitle lblFixEdges
```
lblGeneral
```
CategoryTitle lblGeneral
```
lblGenerateRays
```
CategoryTitle lblGenerateRays
```
lblMaskHull
```
javax.swing.JLabel lblMaskHull
```
lblMeshes
```
CategoryTitle lblMeshes
```
lblMeshesPrefix
```
javax.swing.JLabel lblMeshesPrefix
```
lblRaysPrefix
```
javax.swing.JLabel lblRaysPrefix
```
lblShapeSet
```
javax.swing.JLabel lblShapeSet
```
lblT1Image
```
javax.swing.JLabel lblT1Image
```
lblVolumeToCortex
```
CategoryTitle lblVolumeToCortex
```

lblVolumeToCortexGrid

javax.swing.JLabel lblVolumeToCortexGrid

lblVolumeToCortexName

javax.swing.JLabel lblVolumeToCortexName

lblVolumeToCortexParameters

javax.swing.JLabel lblVolumeToCortexParameters

lblVolumeToCortexSurface

javax.swing.JLabel lblVolumeToCortexSurface

options
```
ScalpAndSkullModelOptions options
```
rays_1
```
java.util.ArrayList<SampleRay> rays_1
```
rays_2
```
java.util.ArrayList<SampleRay> rays_2
```

txtControlAverage

javax.swing.JTextField txtControlAverage

txtControlPrefix
```
javax.swing.JTextField txtControlPrefix
```

txtCortexToVolumeFixedThickness

javax.swing.JTextField txtCortexToVolumeFixedThickness

txtEdgesMaxNbr
```
javax.swing.JTextField txtEdgesMaxNbr
```
txtMeshesPrefix
```
javax.swing.JTextField txtMeshesPrefix
```
txtRaysPrefix
```
javax.swing.JTextField txtRaysPrefix
```

txtVolumeToCortexFixedThickness

javax.swing.JTextField txtVolumeToCortexFixedThickness

txtVolumeToCortexName

javax.swing.JTextField txtVolumeToCortexName

update_controls
```
boolean update_controls
```

volumeToCortexAttr

InterfaceAttributePanel volumeToCortexAttr

Class mgui.interfaces.shapes.neuro.NeuroMeshOptionsDialog extends InterfaceOptionsDialogBox implements Serializable

Serialized Fields

chkApplyGaussian
```
javax.swing.JCheckBox chkApplyGaussian
```
lblMinBrainToSkull
```
javax.swing.JLabel lblMinBrainToSkull
```
lblNeighbourWeight
```
javax.swing.JLabel lblNeighbourWeight
```
lblNoNodes
```
javax.swing.JLabel lblNoNodes
```
lblPlateauLength
```
javax.swing.JLabel lblPlateauLength
```
lblPlateauMaxSlope
```
javax.swing.JLabel lblPlateauMaxSlope
```
lblPlateauSlope
```
javax.swing.JLabel lblPlateauSlope
```
lblSampleRate
```
javax.swing.JLabel lblSampleRate
```
lblScalpThreshold
```
javax.swing.JLabel lblScalpThreshold
```
lblSigmaCutoff
```
javax.swing.JLabel lblSigmaCutoff
```
lblSigmaNormal
```
javax.swing.JLabel lblSigmaNormal
```
lblSigmaTangent
```
javax.swing.JLabel lblSigmaTangent
```

txtMinBrainToSkull

javax.swing.JTextField txtMinBrainToSkull

txtNeighbourWeight

javax.swing.JTextField txtNeighbourWeight

txtNoNodes
```
javax.swing.JTextField txtNoNodes
```
txtPlateauLength
```
javax.swing.JTextField txtPlateauLength
```

txtPlateauMaxSlope

javax.swing.JTextField txtPlateauMaxSlope

txtPlateauSlope
```
javax.swing.JTextField txtPlateauSlope
```
txtSampleRate
```
javax.swing.JTextField txtSampleRate
```

txtScalpThreshold

javax.swing.JTextField txtScalpThreshold

txtSigmaCutoff
```
javax.swing.JTextField txtSigmaCutoff
```
txtSigmaNormal
```
javax.swing.JTextField txtSigmaNormal
```
txtSigmaTangent
```
javax.swing.JTextField txtSigmaTangent
```

Package mgui.interfaces.shapes.selection

Class mgui.interfaces.shapes.selection.InterfaceSelectionSet extends InterfacePanel implements Serializable

Serialized Fields

blnHandleItemChange
```
boolean blnHandleItemChange
```
chkSetExclusive
```
javax.swing.JCheckBox chkSetExclusive
```
cmbModels
```
javax.swing.JComboBox cmbModels
```
cmbSetList
```
javax.swing.JComboBox cmbSetList
```
currentModel
```
ShapeModel3D currentModel
```
currentSet
```
ShapeSelectionSet currentSet
```
interfaceType
```
int interfaceType
```
isSelecting
```
boolean isSelecting
```
lblHeader
```
javax.swing.JLabel lblHeader
```
lblModels
```
javax.swing.JLabel lblModels
```
lblSelectedShape
```
javax.swing.JLabel lblSelectedShape
```
lblSetList
```
javax.swing.JLabel lblSetList
```
lstSelectedShape
```
javax.swing.JList lstSelectedShape
```

modSelectedShape

javax.swing.DefaultListModel modSelectedShape

scrSelectedShape

javax.swing.JScrollPane scrSelectedShape

theMap
```
Map2D theMap
```

thisAdapter

mgui.interfaces.shapes.selection.InterfaceSelectionSet.ShapeMouseListener thisAdapter

thisObj
```
InterfaceSelectionSet thisObj
```
thisParent
```
InterfaceGraphic2D thisParent
```

Class mgui.interfaces.shapes.selection.ShapeSelectionEvent extends java.util.EventObject implements Serializable
- Serialized Fields
  - type
    
    ShapeSelectionEvent.EventType type

Package mgui.interfaces.shapes.trees
- Class mgui.interfaces.shapes.trees.Shape2DTreeNode extends ShapeTreeNode implements Serializable
  - Serialized Fields
    
    isDestroyed
    
    boolean isDestroyed
- Class mgui.interfaces.shapes.trees.Shape3DTreeNode extends ShapeTreeNode implements Serializable
- Class mgui.interfaces.shapes.trees.ShapeModel3DTreeNode extends InterfaceTreeNode implements Serializable
- Class mgui.interfaces.shapes.trees.ShapeTreeCellEditor extends javax.swing.AbstractCellEditor implements Serializable
- Class mgui.interfaces.shapes.trees.ShapeTreeCellRenderer extends javax.swing.JPanel implements Serializable
  - Serialized Fields
    
    hasFocus
    
    boolean hasFocus
    
    label
    
    javax.swing.JLabel label
    
    selected
    
    boolean selected
    
    selectedBG
    
    java.awt.Color selectedBG
    
    tree
    
    javax.swing.JTree tree
- Class mgui.interfaces.shapes.trees.ShapeTreeNode extends InterfaceTreeNode implements Serializable

Package mgui.interfaces.shapes.util

Class mgui.interfaces.shapes.util.Plane3DDialog extends InterfaceDialogBox implements Serializable

Serialized Fields

chkAxisZ_flip
```
javax.swing.JCheckBox chkAxisZ_flip
```
cmdDefX
```
javax.swing.JButton cmdDefX
```
cmdDefY
```
javax.swing.JButton cmdDefY
```
cmdDefZ
```
javax.swing.JButton cmdDefZ
```
current_plane
```
Plane3D current_plane
```
lblAxisX
```
javax.swing.JLabel lblAxisX
```
lblAxisX_X
```
javax.swing.JLabel lblAxisX_X
```
lblAxisX_Y
```
javax.swing.JLabel lblAxisX_Y
```
lblAxisX_Z
```
javax.swing.JLabel lblAxisX_Z
```
lblAxisY
```
javax.swing.JLabel lblAxisY
```
lblAxisY_X
```
javax.swing.JLabel lblAxisY_X
```
lblAxisY_Y
```
javax.swing.JLabel lblAxisY_Y
```
lblAxisY_Z
```
javax.swing.JLabel lblAxisY_Z
```
lblAxisZ
```
javax.swing.JLabel lblAxisZ
```
lblAxisZ_X
```
javax.swing.JLabel lblAxisZ_X
```
lblAxisZ_Y
```
javax.swing.JLabel lblAxisZ_Y
```
lblAxisZ_Z
```
javax.swing.JLabel lblAxisZ_Z
```
lblOrigin
```
javax.swing.JLabel lblOrigin
```
lblOriginX
```
javax.swing.JLabel lblOriginX
```
lblOriginY
```
javax.swing.JLabel lblOriginY
```
lblOriginZ
```
javax.swing.JLabel lblOriginZ
```
plane_is_changed
```
boolean plane_is_changed
```
txtAxisX_X
```
javax.swing.JTextField txtAxisX_X
```
txtAxisX_Y
```
javax.swing.JTextField txtAxisX_Y
```
txtAxisX_Z
```
javax.swing.JTextField txtAxisX_Z
```
txtAxisY_X
```
javax.swing.JTextField txtAxisY_X
```
txtAxisY_Y
```
javax.swing.JTextField txtAxisY_Y
```
txtAxisY_Z
```
javax.swing.JTextField txtAxisY_Z
```
txtAxisZ_X
```
javax.swing.JTextField txtAxisZ_X
```
txtAxisZ_Y
```
javax.swing.JTextField txtAxisZ_Y
```
txtAxisZ_Z
```
javax.swing.JTextField txtAxisZ_Z
```
txtOriginX
```
javax.swing.JTextField txtOriginX
```
txtOriginY
```
javax.swing.JTextField txtOriginY
```
txtOriginZ
```
javax.swing.JTextField txtOriginZ
```

Class mgui.interfaces.shapes.util.ShapeEvent extends java.util.EventObject implements Serializable

serialVersionUID:

7383217668410306626L
- Serialized Fields
  - already_responded
    
    java.util.ArrayList<ShapeListener> already_responded
  - eventType
    
    ShapeEvent.EventType eventType
  - is_consumed
    
    boolean is_consumed
  - modifies_shape_set
    
    boolean modifies_shape_set
Class mgui.interfaces.shapes.util.StrokeSample extends javax.swing.JButton implements Serializable
- Serialized Fields
  - preferredSize
    
    java.awt.Dimension preferredSize
    
    The preferred size of the component.
  - stroke
    
    java.awt.Stroke stroke
    
    The stroke being displayed.
Class mgui.interfaces.shapes.util.Texture3DTest extends java.applet.Applet implements Serializable

Package mgui.interfaces.shapes.video
- Class mgui.interfaces.shapes.video.ChangeSectionVideoTaskDialogPanel extends VideoTaskDialogPanel implements Serializable
  - Serialized Fields
    
    cmbWindow
    
    InterfaceComboBox cmbWindow
    
    handleCombo
    
    boolean handleCombo
    
    lblEndSection
    
    javax.swing.JLabel lblEndSection
    
    lblStartSection
    
    javax.swing.JLabel lblStartSection
    
    lblWindow
    
    javax.swing.JLabel lblWindow
    
    task
    
    ChangeSectionVideoTask task
    
    txtEndSection
    
    javax.swing.JTextField txtEndSection
    
    txtStartSection
    
    javax.swing.JTextField txtStartSection

Package mgui.interfaces.shapes.volume

Class mgui.interfaces.shapes.volume.InterfaceVolumePanel extends InterfacePanel implements Serializable

Serialized Fields

attrGrid3D
```
InterfaceAttributePanel attrGrid3D
```
chkAddNewColumn
```
javax.swing.JCheckBox chkAddNewColumn
```
chkIntSetAlpha
```
javax.swing.JCheckBox chkIntSetAlpha
```
chkIsComposite
```
javax.swing.JCheckBox chkIsComposite
```
chkIsosurfAuto
```
javax.swing.JCheckBox chkIsosurfAuto
```
chkIsosurfCmapMax
```
javax.swing.JCheckBox chkIsosurfCmapMax
```
chkIsosurfCmapMin
```
javax.swing.JCheckBox chkIsosurfCmapMin
```
chkIsosurfFixed
```
javax.swing.JCheckBox chkIsosurfFixed
```

chkLowIsTransparent

javax.swing.JCheckBox chkLowIsTransparent

chkMaskActive
```
javax.swing.JCheckBox chkMaskActive
```

chkMaskMergeOtherMask

javax.swing.JCheckBox chkMaskMergeOtherMask

chkRatios
```
javax.swing.JCheckBox chkRatios
```
chkSetImgStack
```
javax.swing.JCheckBox chkSetImgStack
```
chkSetNone
```
javax.swing.JCheckBox chkSetNone
```
chkSetVolFile
```
javax.swing.JCheckBox chkSetVolFile
```

chkUpdateCurrentColumn

javax.swing.JCheckBox chkUpdateCurrentColumn

cmbBlobOperation
```
InterfaceComboBox cmbBlobOperation
```
cmbDataType
```
javax.swing.JComboBox cmbDataType
```
cmbGrid
```
InterfaceComboBox cmbGrid
```
cmbIntColourMap
```
InterfaceComboBox cmbIntColourMap
```
cmbIsosurfColumn
```
InterfaceComboBox cmbIsosurfColumn
```
cmbIsosurfShapeSet
```
InterfaceComboBox cmbIsosurfShapeSet
```
cmbMask
```
javax.swing.JComboBox cmbMask
```

cmbMaskMergeOtherMask

javax.swing.JComboBox cmbMaskMergeOtherMask

cmbMaskMergeOtherVolume

javax.swing.JComboBox cmbMaskMergeOtherVolume

cmbMaskMergeShape
```
javax.swing.JComboBox cmbMaskMergeShape
```

cmbMaskShapeCombo1

javax.swing.JComboBox cmbMaskShapeCombo1

cmbOpFlipWhichDim
```
javax.swing.JComboBox cmbOpFlipWhichDim
```
cmbOpRotateAngle
```
javax.swing.JComboBox cmbOpRotateAngle
```
cmbOpRotateAxis
```
javax.swing.JComboBox cmbOpRotateAxis
```
cmbParentSet
```
InterfaceComboBox cmbParentSet
```
cmbSmoothingOperation
```
InterfaceComboBox cmbSmoothingOperation
```
cmbV2VOperation
```
InterfaceComboBox cmbV2VOperation
```
cmbV2VTarget
```
InterfaceComboBox cmbV2VTarget
```
cmdAddColumn
```
javax.swing.JButton cmdAddColumn
```
cmdApply
```
javax.swing.JButton cmdApply
```
cmdBlob
```
javax.swing.JButton cmdBlob
```
cmdDefGeometry
```
javax.swing.JButton cmdDefGeometry
```
cmdDefX
```
javax.swing.JButton cmdDefX
```
cmdDefY
```
javax.swing.JButton cmdDefY
```
cmdDefZ
```
javax.swing.JButton cmdDefZ
```
cmdDelete
```
javax.swing.JButton cmdDelete
```
cmdHistCalc
```
javax.swing.JButton cmdHistCalc
```
cmdHistReset
```
javax.swing.JButton cmdHistReset
```
cmdImgStack
```
javax.swing.JButton cmdImgStack
```
cmdIntApply
```
javax.swing.JButton cmdIntApply
```
cmdIntReset
```
javax.swing.JButton cmdIntReset
```
cmdIsosurfApply
```
javax.swing.JButton cmdIsosurfApply
```
cmdMaskAddUpdate
```
javax.swing.JButton cmdMaskAddUpdate
```
cmdMaskClear
```
javax.swing.JButton cmdMaskClear
```
cmdMaskInvert
```
javax.swing.JButton cmdMaskInvert
```

cmdMaskMergeFileBrowse

javax.swing.JButton cmdMaskMergeFileBrowse

cmdMaskMergeOtherApply

javax.swing.JButton cmdMaskMergeOtherApply

cmdMaskMergeShapeApply

javax.swing.JButton cmdMaskMergeShapeApply

cmdMaskRemove
```
javax.swing.JButton cmdMaskRemove
```
cmdMoveColumnDown
```
javax.swing.JButton cmdMoveColumnDown
```
cmdMoveColumnUp
```
javax.swing.JButton cmdMoveColumnUp
```
cmdOpFlipDim
```
javax.swing.JButton cmdOpFlipDim
```
cmdOpInvertImage
```
javax.swing.JButton cmdOpInvertImage
```
cmdOpRotate
```
javax.swing.JButton cmdOpRotate
```
cmdSmoothing
```
javax.swing.JButton cmdSmoothing
```
cmdUpdateSpecs
```
javax.swing.JButton cmdUpdateSpecs
```
cmdV2V
```
javax.swing.JButton cmdV2V
```
cmdVolumeFile
```
javax.swing.JButton cmdVolumeFile
```
cmdZeroes
```
javax.swing.JButton cmdZeroes
```
current_mask
```
boolean[][][] current_mask
```
current_mid_max
```
int current_mid_max
```
current_mid_min
```
int current_mid_min
```
current_width_max
```
int current_width_max
```
currentVolume
```
Volume3DInt currentVolume
```
default_mid_min
```
int default_mid_min
```
default_width_max
```
int default_width_max
```
gridAttributes
```
AttributeList gridAttributes
```

imgIntensity

mgui.interfaces.shapes.volume.InterfaceVolumePanel.ImageViewComponent imgIntensity

lastTool
```
Tool2D lastTool
```
lblApply
```
CategoryTitle lblApply
```
lblAttributes
```
CategoryTitle lblAttributes
```
lblAxisX
```
javax.swing.JLabel lblAxisX
```
lblAxisX_X
```
javax.swing.JLabel lblAxisX_X
```
lblAxisX_Y
```
javax.swing.JLabel lblAxisX_Y
```
lblAxisX_Z
```
javax.swing.JLabel lblAxisX_Z
```
lblAxisY
```
javax.swing.JLabel lblAxisY
```
lblAxisY_X
```
javax.swing.JLabel lblAxisY_X
```
lblAxisY_Y
```
javax.swing.JLabel lblAxisY_Y
```
lblAxisY_Z
```
javax.swing.JLabel lblAxisY_Z
```
lblAxisZ
```
javax.swing.JLabel lblAxisZ
```
lblAxisZ_X
```
javax.swing.JLabel lblAxisZ_X
```
lblAxisZ_Y
```
javax.swing.JLabel lblAxisZ_Y
```
lblAxisZ_Z
```
javax.swing.JLabel lblAxisZ_Z
```
lblBlobOperation
```
javax.swing.JLabel lblBlobOperation
```
lblBlobs
```
CategoryTitle lblBlobs
```
lblCurrentGrid
```
javax.swing.JLabel lblCurrentGrid
```
lblData
```
CategoryTitle lblData
```
lblDataType
```
javax.swing.JLabel lblDataType
```
lblDataX
```
javax.swing.JLabel lblDataX
```
lblDataY
```
javax.swing.JLabel lblDataY
```
lblDataZ
```
javax.swing.JLabel lblDataZ
```
lblDimData
```
javax.swing.JLabel lblDimData
```
lblDimGeom
```
javax.swing.JLabel lblDimGeom
```
lblGeomX
```
javax.swing.JLabel lblGeomX
```
lblGeomY
```
javax.swing.JLabel lblGeomY
```
lblGeomZ
```
javax.swing.JLabel lblGeomZ
```
lblGrid
```
CategoryTitle lblGrid
```
lblHistBins
```
javax.swing.JLabel lblHistBins
```
lblHistMax
```
javax.swing.JLabel lblHistMax
```
lblHistMin
```
javax.swing.JLabel lblHistMin
```
lblHistogram
```
CategoryTitle lblHistogram
```
lblHistYScale
```
javax.swing.JLabel lblHistYScale
```
lblIntAlpha
```
javax.swing.JLabel lblIntAlpha
```
lblIntAlphaMax
```
javax.swing.JLabel lblIntAlphaMax
```
lblIntAlphaMin
```
javax.swing.JLabel lblIntAlphaMin
```
lblIntColourMap
```
javax.swing.JLabel lblIntColourMap
```
lblIntensity
```
CategoryTitle lblIntensity
```
lblIntIntercept
```
javax.swing.JLabel lblIntIntercept
```
lblIntMax
```
javax.swing.JLabel lblIntMax
```
lblIntMid
```
javax.swing.JLabel lblIntMid
```
lblIntMin
```
javax.swing.JLabel lblIntMin
```
lblIntScale
```
javax.swing.JLabel lblIntScale
```
lblIntSlice
```
javax.swing.JLabel lblIntSlice
```
lblIntWidth
```
javax.swing.JLabel lblIntWidth
```
lblIsosurf
```
CategoryTitle lblIsosurf
```
lblIsosurfColumn
```
javax.swing.JLabel lblIsosurfColumn
```
lblIsosurfLevel
```
javax.swing.JLabel lblIsosurfLevel
```
lblIsosurfName
```
javax.swing.JLabel lblIsosurfName
```
lblIsosurfShapeSet
```
javax.swing.JLabel lblIsosurfShapeSet
```
lblMask
```
javax.swing.JLabel lblMask
```
lblMasking
```
CategoryTitle lblMasking
```
lblMaskMergeFile
```
javax.swing.JLabel lblMaskMergeFile
```
lblMaskMergeOther
```
javax.swing.JLabel lblMaskMergeOther
```

lblMaskMergeOtherVolume

javax.swing.JLabel lblMaskMergeOtherVolume

lblMaskMergeShape
```
javax.swing.JLabel lblMaskMergeShape
```
lblMaskMergeShape2
```
javax.swing.JLabel lblMaskMergeShape2
```
lblMaskName
```
javax.swing.JLabel lblMaskName
```
lblOperations
```
CategoryTitle lblOperations
```
lblOpFlipDim
```
javax.swing.JLabel lblOpFlipDim
```
lblOpFlipWhichDim
```
javax.swing.JLabel lblOpFlipWhichDim
```
lblOpRotate
```
javax.swing.JLabel lblOpRotate
```
lblOpRotateAngle
```
javax.swing.JLabel lblOpRotateAngle
```
lblOpRotateAxis
```
javax.swing.JLabel lblOpRotateAxis
```
lblOrigin
```
javax.swing.JLabel lblOrigin
```
lblOriginX
```
javax.swing.JLabel lblOriginX
```
lblOriginY
```
javax.swing.JLabel lblOriginY
```
lblOriginZ
```
javax.swing.JLabel lblOriginZ
```
lblParentSet
```
javax.swing.JLabel lblParentSet
```
lblPreview
```
CategoryTitle lblPreview
```
lblSmoothing
```
CategoryTitle lblSmoothing
```

lblSmoothingOperation

javax.swing.JLabel lblSmoothingOperation

lblSpecs
```
CategoryTitle lblSpecs
```
lblV2V
```
CategoryTitle lblV2V
```
lblV2VOperation
```
javax.swing.JLabel lblV2VOperation
```
lblV2VTarget
```
javax.swing.JLabel lblV2VTarget
```

lstBlobParameters

InterfaceAttributePanel lstBlobParameters

lstIsosurfAttributes

InterfaceAttributePanel lstIsosurfAttributes

lstSmoothingParameters

InterfaceAttributePanel lstSmoothingParameters

lstV2VParameters

InterfaceAttributePanel lstV2VParameters

maskDialog
```
VolumeMaskDialog maskDialog
```
maskOptions
```
VolumeMaskOptions_old maskOptions
```
pnlHistPanel
```
HistogramPlot pnlHistPanel
```
pnlMaskShape
```
javax.swing.JPanel pnlMaskShape
```
reset_histogram
```
boolean reset_histogram
```
scrDataColumns
```
javax.swing.JScrollPane scrDataColumns
```
sldHistYScale
```
javax.swing.JSlider sldHistYScale
```
sldIntAlpha
```
javax.swing.JSlider sldIntAlpha
```
sldIntAlphaMax
```
javax.swing.JSlider sldIntAlphaMax
```
sldIntAlphaMin
```
javax.swing.JSlider sldIntAlphaMin
```
sldIntMid
```
javax.swing.JSlider sldIntMid
```
sldIntSlice
```
javax.swing.JSlider sldIntSlice
```
sldIntWidth
```
javax.swing.JSlider sldIntWidth
```
sliderLastMaxMid
```
int sliderLastMaxMid
```
sliderLastMaxWidth
```
int sliderLastMaxWidth
```
slidersJustChanged
```
boolean slidersJustChanged
```
txtAxisX_X
```
javax.swing.JTextField txtAxisX_X
```
txtAxisX_Y
```
javax.swing.JTextField txtAxisX_Y
```
txtAxisX_Z
```
javax.swing.JTextField txtAxisX_Z
```
txtAxisY_X
```
javax.swing.JTextField txtAxisY_X
```
txtAxisY_Y
```
javax.swing.JTextField txtAxisY_Y
```
txtAxisY_Z
```
javax.swing.JTextField txtAxisY_Z
```
txtAxisZ_X
```
javax.swing.JTextField txtAxisZ_X
```
txtAxisZ_Y
```
javax.swing.JTextField txtAxisZ_Y
```
txtAxisZ_Z
```
javax.swing.JTextField txtAxisZ_Z
```
txtDataX
```
javax.swing.JTextField txtDataX
```
txtDataY
```
javax.swing.JTextField txtDataY
```
txtDataZ
```
javax.swing.JTextField txtDataZ
```
txtGeomX
```
javax.swing.JTextField txtGeomX
```
txtGeomY
```
javax.swing.JTextField txtGeomY
```
txtGeomZ
```
javax.swing.JTextField txtGeomZ
```
txtHistBins
```
javax.swing.JTextField txtHistBins
```
txtHistMax
```
javax.swing.JTextField txtHistMax
```
txtHistMin
```
javax.swing.JTextField txtHistMin
```
txtHistYScale
```
javax.swing.JTextField txtHistYScale
```
txtIntAlpha
```
javax.swing.JTextField txtIntAlpha
```
txtIntAlphaMax
```
javax.swing.JTextField txtIntAlphaMax
```
txtIntAlphaMin
```
javax.swing.JTextField txtIntAlphaMin
```
txtIntIntercept
```
javax.swing.JTextField txtIntIntercept
```
txtIntMax
```
javax.swing.JTextField txtIntMax
```
txtIntMid
```
javax.swing.JTextField txtIntMid
```
txtIntMin
```
javax.swing.JTextField txtIntMin
```
txtIntScale
```
javax.swing.JTextField txtIntScale
```
txtIntSlice
```
javax.swing.JTextField txtIntSlice
```
txtIntWidth
```
javax.swing.JTextField txtIntWidth
```
txtIsosurfLevel
```
javax.swing.JTextField txtIsosurfLevel
```
txtIsosurfName
```
javax.swing.JTextField txtIsosurfName
```
txtMaskName
```
javax.swing.JTextField txtMaskName
```

txtMaskShapeText1

javax.swing.JTextField txtMaskShapeText1

txtMaskVolume
```
javax.swing.JTextField txtMaskVolume
```
txtOriginX
```
javax.swing.JTextField txtOriginX
```
txtOriginY
```
javax.swing.JTextField txtOriginY
```
txtOriginZ
```
javax.swing.JTextField txtOriginZ
```
updateAnything
```
boolean updateAnything
```
updateGridCombo
```
boolean updateGridCombo
```
updateIntColourMap
```
boolean updateIntColourMap
```
updateIntensity
```
boolean updateIntensity
```
updateSliders
```
boolean updateSliders
```

vertex_data_model

mgui.interfaces.shapes.volume.InterfaceVolumePanel.VertexDataTableModel vertex_data_model

vertex_data_table
```
javax.swing.JTable vertex_data_table
```
volOptions
```
VolumeInputOptions volOptions
```
volume_engine
```
VolumeEngine volume_engine
```

volumeFileWriteDialog

VolumeFileWriteDialog volumeFileWriteDialog

volumeMaskOptions
```
VolumeMaskOptions volumeMaskOptions
```

Class mgui.interfaces.shapes.volume.InterfaceVolumePanel.SliderTableColumn extends javax.swing.AbstractCellEditor implements Serializable
- Serialized Fields
  - INITAL_VALUE
    
    int INITAL_VALUE
  - MAX_VALUE
    
    int MAX_VALUE
  - MIN_VLAUE
    
    int MIN_VLAUE
  - slEditor
    
    javax.swing.JSlider slEditor
  - slRenderer
    
    javax.swing.JSlider slRenderer

Class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel extends InterfacePanel implements Serializable

Serialized Fields

chkIntSetAlpha
```
javax.swing.JCheckBox chkIntSetAlpha
```
chkRatios
```
javax.swing.JCheckBox chkRatios
```
cmbDataType
```
javax.swing.JComboBox cmbDataType
```
cmbIntColourMap
```
InterfaceComboBox cmbIntColourMap
```
cmbOverlaySet
```
InterfaceComboBox cmbOverlaySet
```
cmbParentSet
```
InterfaceComboBox cmbParentSet
```
cmdDefGeometry
```
javax.swing.JButton cmdDefGeometry
```
cmdDefX
```
javax.swing.JButton cmdDefX
```
cmdDefY
```
javax.swing.JButton cmdDefY
```
cmdDefZ
```
javax.swing.JButton cmdDefZ
```
cmdHistCalc
```
javax.swing.JButton cmdHistCalc
```
cmdHistReset
```
javax.swing.JButton cmdHistReset
```
cmdIntApply
```
javax.swing.JButton cmdIntApply
```
cmdIntReset
```
javax.swing.JButton cmdIntReset
```
cmdUpdateSpecs
```
javax.swing.JButton cmdUpdateSpecs
```
cmdVolumesAdd
```
javax.swing.JButton cmdVolumesAdd
```
cmdVolumesLoad
```
javax.swing.JButton cmdVolumesLoad
```
cmdVolumesRemove
```
javax.swing.JButton cmdVolumesRemove
```

current_composites

java.awt.image.BufferedImage[] current_composites

current_mid_max
```
int current_mid_max
```
current_mid_min
```
int current_mid_min
```
current_volume_set
```
VolumeSet3DInt current_volume_set
```
current_width_max
```
int current_width_max
```
default_mid_min
```
int default_mid_min
```
default_width_max
```
int default_width_max
```

imgIntensity

mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel.ImageViewComponent imgIntensity

lblAxisX
```
javax.swing.JLabel lblAxisX
```
lblAxisX_X
```
javax.swing.JLabel lblAxisX_X
```
lblAxisX_Y
```
javax.swing.JLabel lblAxisX_Y
```
lblAxisX_Z
```
javax.swing.JLabel lblAxisX_Z
```
lblAxisY
```
javax.swing.JLabel lblAxisY
```
lblAxisY_X
```
javax.swing.JLabel lblAxisY_X
```
lblAxisY_Y
```
javax.swing.JLabel lblAxisY_Y
```
lblAxisY_Z
```
javax.swing.JLabel lblAxisY_Z
```
lblAxisZ
```
javax.swing.JLabel lblAxisZ
```
lblAxisZ_X
```
javax.swing.JLabel lblAxisZ_X
```
lblAxisZ_Y
```
javax.swing.JLabel lblAxisZ_Y
```
lblAxisZ_Z
```
javax.swing.JLabel lblAxisZ_Z
```
lblData
```
CategoryTitle lblData
```
lblDataType
```
javax.swing.JLabel lblDataType
```
lblDataX
```
javax.swing.JLabel lblDataX
```
lblDataY
```
javax.swing.JLabel lblDataY
```
lblDataZ
```
javax.swing.JLabel lblDataZ
```
lblDimData
```
javax.swing.JLabel lblDimData
```
lblDimGeom
```
javax.swing.JLabel lblDimGeom
```
lblGeomX
```
javax.swing.JLabel lblGeomX
```
lblGeomY
```
javax.swing.JLabel lblGeomY
```
lblGeomZ
```
javax.swing.JLabel lblGeomZ
```
lblGrid
```
CategoryTitle lblGrid
```
lblHistBins
```
javax.swing.JLabel lblHistBins
```
lblHistMax
```
javax.swing.JLabel lblHistMax
```
lblHistMin
```
javax.swing.JLabel lblHistMin
```
lblHistogram
```
CategoryTitle lblHistogram
```
lblHistYScale
```
javax.swing.JLabel lblHistYScale
```
lblIntAlpha
```
javax.swing.JLabel lblIntAlpha
```
lblIntAlphaMax
```
javax.swing.JLabel lblIntAlphaMax
```
lblIntAlphaMin
```
javax.swing.JLabel lblIntAlphaMin
```
lblIntColourMap
```
javax.swing.JLabel lblIntColourMap
```
lblIntensity
```
CategoryTitle lblIntensity
```
lblIntIntercept
```
javax.swing.JLabel lblIntIntercept
```
lblIntMid
```
javax.swing.JLabel lblIntMid
```
lblIntScale
```
javax.swing.JLabel lblIntScale
```
lblIntSlice
```
javax.swing.JLabel lblIntSlice
```
lblIntWidth
```
javax.swing.JLabel lblIntWidth
```
lblOrigin
```
javax.swing.JLabel lblOrigin
```
lblOriginX
```
javax.swing.JLabel lblOriginX
```
lblOriginY
```
javax.swing.JLabel lblOriginY
```
lblOriginZ
```
javax.swing.JLabel lblOriginZ
```
lblOverlaySet
```
javax.swing.JLabel lblOverlaySet
```
lblParentSet
```
javax.swing.JLabel lblParentSet
```
lblSpecs
```
CategoryTitle lblSpecs
```
lblVolumes
```
CategoryTitle lblVolumes
```
pnlHistPanel
```
HistogramPlot pnlHistPanel
```
scrVolumes
```
javax.swing.JScrollPane scrVolumes
```
sldHistYScale
```
javax.swing.JSlider sldHistYScale
```
sldIntAlpha
```
javax.swing.JSlider sldIntAlpha
```
sldIntAlphaMax
```
javax.swing.JSlider sldIntAlphaMax
```
sldIntAlphaMin
```
javax.swing.JSlider sldIntAlphaMin
```
sldIntMid
```
javax.swing.JSlider sldIntMid
```
sldIntSlice
```
javax.swing.JSlider sldIntSlice
```
sldIntWidth
```
javax.swing.JSlider sldIntWidth
```
tblVolumes
```
javax.swing.JTable tblVolumes
```
txtAxisX_X
```
javax.swing.JTextField txtAxisX_X
```
txtAxisX_Y
```
javax.swing.JTextField txtAxisX_Y
```
txtAxisX_Z
```
javax.swing.JTextField txtAxisX_Z
```
txtAxisY_X
```
javax.swing.JTextField txtAxisY_X
```
txtAxisY_Y
```
javax.swing.JTextField txtAxisY_Y
```
txtAxisY_Z
```
javax.swing.JTextField txtAxisY_Z
```
txtAxisZ_X
```
javax.swing.JTextField txtAxisZ_X
```
txtAxisZ_Y
```
javax.swing.JTextField txtAxisZ_Y
```
txtAxisZ_Z
```
javax.swing.JTextField txtAxisZ_Z
```
txtDataX
```
javax.swing.JTextField txtDataX
```
txtDataY
```
javax.swing.JTextField txtDataY
```
txtDataZ
```
javax.swing.JTextField txtDataZ
```
txtGeomX
```
javax.swing.JTextField txtGeomX
```
txtGeomY
```
javax.swing.JTextField txtGeomY
```
txtGeomZ
```
javax.swing.JTextField txtGeomZ
```
txtHistBins
```
javax.swing.JTextField txtHistBins
```
txtHistMax
```
javax.swing.JTextField txtHistMax
```
txtHistMin
```
javax.swing.JTextField txtHistMin
```
txtHistYScale
```
javax.swing.JTextField txtHistYScale
```
txtIntAlpha
```
javax.swing.JTextField txtIntAlpha
```
txtIntAlphaMax
```
javax.swing.JTextField txtIntAlphaMax
```
txtIntAlphaMin
```
javax.swing.JTextField txtIntAlphaMin
```
txtIntIntercept
```
javax.swing.JTextField txtIntIntercept
```
txtIntMid
```
javax.swing.JTextField txtIntMid
```
txtIntScale
```
javax.swing.JTextField txtIntScale
```
txtIntSlice
```
javax.swing.JTextField txtIntSlice
```
txtIntWidth
```
javax.swing.JTextField txtIntWidth
```
txtOriginX
```
javax.swing.JTextField txtOriginX
```
txtOriginY
```
javax.swing.JTextField txtOriginY
```
txtOriginZ
```
javax.swing.JTextField txtOriginZ
```
updateGridCombo
```
boolean updateGridCombo
```
updateIntensity
```
boolean updateIntensity
```

volume_table_model

InterfaceVolumeSetPanel.OverlayVolumeTableModel volume_table_model

Class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel.AlphaSliderEditor extends javax.swing.AbstractCellEditor implements Serializable
- Serialized Fields
  - first_time
    
    boolean first_time
  - slider
    
    javax.swing.JSlider slider
Class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel.AlphaSliderRenderer extends javax.swing.JSlider implements Serializable
Class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel.OverlayVolumeTableModel extends javax.swing.table.DefaultTableModel implements Serializable
- Serialized Fields
  - volume_set
    
    VolumeSet3DInt volume_set

Class mgui.interfaces.shapes.volume.VolumeMaskDialog extends InterfaceOptionsDialogBox implements Serializable

Serialized Fields

chkActive
```
javax.swing.JCheckBox chkActive
```
chkInvert
```
javax.swing.JCheckBox chkInvert
```
chkMergeOtherMask
```
javax.swing.JCheckBox chkMergeOtherMask
```
cmbMask
```
javax.swing.JComboBox cmbMask
```
cmbMergeOtherMask
```
javax.swing.JComboBox cmbMergeOtherMask
```

cmbMergeOtherVolume

javax.swing.JComboBox cmbMergeOtherVolume

cmbMergeShape
```
javax.swing.JComboBox cmbMergeShape
```
cmdMaskAddUpdate
```
javax.swing.JButton cmdMaskAddUpdate
```
cmdMaskClear
```
javax.swing.JButton cmdMaskClear
```
cmdMaskInvert
```
javax.swing.JButton cmdMaskInvert
```
cmdMaskRemove
```
javax.swing.JButton cmdMaskRemove
```
cmdMergeFileApply
```
javax.swing.JButton cmdMergeFileApply
```
cmdMergeFileBrowse
```
javax.swing.JButton cmdMergeFileBrowse
```
cmdMergeOtherApply
```
javax.swing.JButton cmdMergeOtherApply
```
cmdMergeShapeApply
```
javax.swing.JButton cmdMergeShapeApply
```
current_mask
```
boolean[][][] current_mask
```
lblCurrentVolume
```
javax.swing.JLabel lblCurrentVolume
```
lblMask
```
javax.swing.JLabel lblMask
```
lblMergeFile
```
javax.swing.JLabel lblMergeFile
```
lblMergeOther
```
javax.swing.JLabel lblMergeOther
```
lblMergeOtherVolume
```
javax.swing.JLabel lblMergeOtherVolume
```
lblMergeShape
```
javax.swing.JLabel lblMergeShape
```
lblName
```
javax.swing.JLabel lblName
```
txtCurrentVolume
```
javax.swing.JTextField txtCurrentVolume
```
txtName
```
javax.swing.JTextField txtName
```

Class mgui.interfaces.shapes.volume.VolumeMaskDialog_old extends InterfaceDialogBox implements Serializable

Serialized Fields

chkInvertData
```
javax.swing.JCheckBox chkInvertData
```
chkInvertMax
```
javax.swing.JCheckBox chkInvertMax
```
chkInvertMin
```
javax.swing.JCheckBox chkInvertMin
```
chkInvertShape
```
javax.swing.JCheckBox chkInvertShape
```
cmbAxis1
```
javax.swing.JComboBox cmbAxis1
```
cmbAxis2
```
javax.swing.JComboBox cmbAxis2
```
cmbAxis3
```
javax.swing.JComboBox cmbAxis3
```
cmbInputChannel
```
javax.swing.JComboBox cmbInputChannel
```
cmbInputOp
```
javax.swing.JComboBox cmbInputOp
```
cmbInputType
```
javax.swing.JComboBox cmbInputType
```
cmbMaskShape
```
javax.swing.JComboBox cmbMaskShape
```
cmbOutputChannel
```
javax.swing.JComboBox cmbOutputChannel
```
dataDims
```
int[] dataDims
```
generalSize
```
int generalSize
```
lblAxis1
```
javax.swing.JLabel lblAxis1
```
lblAxis2
```
javax.swing.JLabel lblAxis2
```
lblAxis3
```
javax.swing.JLabel lblAxis3
```
lblAxisPos1
```
javax.swing.JLabel lblAxisPos1
```
lblAxisPos2
```
javax.swing.JLabel lblAxisPos2
```
lblAxisPos3
```
javax.swing.JLabel lblAxisPos3
```
lblAxisWidth1
```
javax.swing.JLabel lblAxisWidth1
```
lblAxisWidth2
```
javax.swing.JLabel lblAxisWidth2
```
lblAxisWidth3
```
javax.swing.JLabel lblAxisWidth3
```
lblGeneralParams
```
javax.swing.JLabel lblGeneralParams
```
lblInputChannel
```
javax.swing.JLabel lblInputChannel
```
lblInputFactor
```
javax.swing.JLabel lblInputFactor
```
lblInputOp
```
javax.swing.JLabel lblInputOp
```
lblInputType
```
javax.swing.JLabel lblInputType
```
lblInputValue
```
javax.swing.JLabel lblInputValue
```
lblInvert
```
javax.swing.JLabel lblInvert
```
lblMaskShape
```
javax.swing.JLabel lblMaskShape
```
lblMaxThreshold
```
javax.swing.JLabel lblMaxThreshold
```
lblMinThreshold
```
javax.swing.JLabel lblMinThreshold
```
lblOutputChannel
```
javax.swing.JLabel lblOutputChannel
```
lblShapeParams
```
javax.swing.JLabel lblShapeParams
```
lblSmoothingExp
```
javax.swing.JLabel lblSmoothingExp
```
options
```
VolumeMaskOptions_old options
```
panels
```
ValueMap panels
```

pMaskAll

mgui.interfaces.shapes.volume.VolumeMaskDialog_old.VolumeMaskPanel pMaskAll

pMaskAxis1

mgui.interfaces.shapes.volume.VolumeMaskDialog_old.VolumeMaskPanel pMaskAxis1

pMaskAxis2

mgui.interfaces.shapes.volume.VolumeMaskDialog_old.VolumeMaskPanel pMaskAxis2

pMaskAxis3

mgui.interfaces.shapes.volume.VolumeMaskDialog_old.VolumeMaskPanel pMaskAxis3

pMaskBox

mgui.interfaces.shapes.volume.VolumeMaskDialog_old.VolumeMaskPanel pMaskBox

pMaskSphere

mgui.interfaces.shapes.volume.VolumeMaskDialog_old.VolumeMaskPanel pMaskSphere

pMaskWedge

mgui.interfaces.shapes.volume.VolumeMaskDialog_old.VolumeMaskPanel pMaskWedge

txtAxisPos1
```
javax.swing.JTextField txtAxisPos1
```
txtAxisPos2
```
javax.swing.JTextField txtAxisPos2
```
txtAxisPos3
```
javax.swing.JTextField txtAxisPos3
```
txtAxisWidth1
```
javax.swing.JTextField txtAxisWidth1
```
txtAxisWidth2
```
javax.swing.JTextField txtAxisWidth2
```
txtAxisWidth3
```
javax.swing.JTextField txtAxisWidth3
```
txtInputFactor
```
javax.swing.JTextField txtInputFactor
```
txtInputValue
```
javax.swing.JTextField txtInputValue
```
txtMaxThreshold
```
javax.swing.JTextField txtMaxThreshold
```
txtMinThreshold
```
javax.swing.JTextField txtMinThreshold
```
txtSmoothingExp
```
javax.swing.JTextField txtSmoothingExp
```

Package mgui.interfaces.startup
- Class mgui.interfaces.startup.InitFrame extends javax.swing.JFrame implements Serializable
  - Serialized Fields
    
    button_panel
    
    javax.swing.JPanel button_panel
    
    combo_box
    
    javax.swing.JComboBox combo_box
    
    combo_label
    
    javax.swing.JLabel combo_label
    
    combo_panel
    
    javax.swing.JPanel combo_panel
    
    default_button
    
    javax.swing.JButton default_button
    
    init_file
    
    java.lang.String init_file
    
    is_destroyed
    
    boolean is_destroyed
    
    listener
    
    InitListener listener
    
    ok_button
    
    javax.swing.JButton ok_button
    
    quit_button
    
    javax.swing.JButton quit_button
    
    scroll_pane
    
    javax.swing.JScrollPane scroll_pane
    
    text_area
    
    javax.swing.JTextArea text_area
- Class mgui.interfaces.startup.StartUpFrame extends javax.swing.JFrame implements Serializable

Package mgui.interfaces.stats

Class mgui.interfaces.stats.HistogramPlot extends javax.swing.JPanel implements Serializable

Serialized Fields

adjusting_high
```
boolean adjusting_high
```
adjusting_low
```
boolean adjusting_low
```
adjusting_mid
```
boolean adjusting_mid
```

change_listeners

java.util.ArrayList<javax.swing.event.ChangeListener> change_listeners

colour_model
```
WindowedColourModel colour_model
```
handle_high
```
java.awt.geom.Rectangle2D handle_high
```
handle_low
```
java.awt.geom.Rectangle2D handle_low
```
handle_mid
```
java.awt.geom.Ellipse2D handle_mid
```
handle_size
```
float handle_size
```
histogram
```
Histogram histogram
```
is_adjustable
```
boolean is_adjustable
```
is_busy
```
boolean is_busy
```
is_mouseover_handle_high
```
boolean is_mouseover_handle_high
```
is_mouseover_handle_low
```
boolean is_mouseover_handle_low
```
is_mouseover_handle_mid
```
boolean is_mouseover_handle_mid
```
plot_x_end
```
float plot_x_end
```
plot_x_start
```
float plot_x_start
```
plot_y_end
```
float plot_y_end
```
plot_y_start
```
float plot_y_start
```
y_scale
```
float y_scale
```

Package mgui.interfaces.tables
- Class mgui.interfaces.tables.DataTableException extends java.lang.Exception implements Serializable
- Class mgui.interfaces.tables.InterfaceDataTable extends InterfaceGraphic<ToolDataSource> implements Serializable
  - Serialized Fields
    
    adding_row
    
    boolean adding_row
    
    scrollPane
    
    javax.swing.JScrollPane scrollPane
    
    sorter
    
    javax.swing.table.TableRowSorter sorter
    
    source_name
    
    java.lang.String source_name
    
    table
    
    javax.swing.JTable table
    
    table_model
    
    InterfaceTableModel table_model
- Class mgui.interfaces.tables.InterfaceDataTableTitle extends InterfaceGraphicWindow implements Serializable
- Class mgui.interfaces.tables.InterfaceTableModel extends javax.swing.table.AbstractTableModel implements Serializable
  - Serialized Fields
    
    attributes
    
    AttributeList attributes

Package mgui.interfaces.tools

Class mgui.interfaces.tools.InterfaceTool2DPanel extends InterfacePanel implements Serializable
- Serialized Fields
  - buttons
    
    java.util.ArrayList<mgui.interfaces.tools.InterfaceTool2DPanel.Control> buttons
    
    Deprecated.
  - categories
    
    java.util.ArrayList<java.lang.String> categories
    
    Deprecated.
  - displayPanel
    
    InterfaceDisplayPanel displayPanel
    
    Deprecated.

Class mgui.interfaces.tools.InterfaceToolPanel extends InterfacePanel implements Serializable

Serialized Fields

lblDraw2D
```
CategoryTitle lblDraw2D
```
lblDraw3D
```
CategoryTitle lblDraw3D
```
lblEdit2D
```
CategoryTitle lblEdit2D
```
lblEdit3D
```
CategoryTitle lblEdit3D
```
lblQuery2D
```
CategoryTitle lblQuery2D
```
lblQuery3D
```
CategoryTitle lblQuery3D
```
lblView2D
```
CategoryTitle lblView2D
```
lblView3D
```
CategoryTitle lblView3D
```

toolClosedPolygon2D

mgui.interfaces.tools.InterfaceToolPanel.ToolItem toolClosedPolygon2D

toolCreateMeshFromPolylines

mgui.interfaces.tools.InterfaceToolPanel.ToolItem toolCreateMeshFromPolylines

toolCutMeshWithPlane

mgui.interfaces.tools.InterfaceToolPanel.ToolItem toolCutMeshWithPlane

toolDynZoom2D

mgui.interfaces.tools.InterfaceToolPanel.ToolItem toolDynZoom2D

toolGetConvexHull2D

mgui.interfaces.tools.InterfaceToolPanel.ToolItem toolGetConvexHull2D

toolGetMeshIntersectPolylines

mgui.interfaces.tools.InterfaceToolPanel.ToolItem toolGetMeshIntersectPolylines

toolOpenPolygon2D

mgui.interfaces.tools.InterfaceToolPanel.ToolItem toolOpenPolygon2D

toolOrbit3D

mgui.interfaces.tools.InterfaceToolPanel.ToolItem toolOrbit3D

toolRuler2D

mgui.interfaces.tools.InterfaceToolPanel.ToolItem toolRuler2D

toolSelectMeshBoundaryNodes

mgui.interfaces.tools.InterfaceToolPanel.ToolItem toolSelectMeshBoundaryNodes

toolSelectMeshRegionBoundaryNodes

mgui.interfaces.tools.InterfaceToolPanel.ToolItem toolSelectMeshRegionBoundaryNodes

toolSelectNodesWithPolygon

mgui.interfaces.tools.InterfaceToolPanel.ToolItem toolSelectNodesWithPolygon

Class mgui.interfaces.tools.ToolEvent extends java.util.EventObject implements Serializable
- Serialized Fields
  - type
    
    ToolEvent.EventType type
Class mgui.interfaces.tools.ToolInputEvent extends java.util.EventObject implements Serializable
- Serialized Fields
  - ctrl_pressed
    
    boolean ctrl_pressed
  - eventPoint
    
    java.awt.Point eventPoint
  - eventType
    
    int eventType
  - eventVal
    
    double eventVal
  - keyInputVal
    
    int keyInputVal
  - shift_pressed
    
    boolean shift_pressed
Class mgui.interfaces.tools.ToolMouseEvent extends ToolInputEvent implements Serializable
- Serialized Fields
  - mouseEvent
    
    java.awt.event.MouseEvent mouseEvent

Package mgui.interfaces.tools.dialogs
- Class mgui.interfaces.tools.dialogs.DialogToolDialogBox extends InterfaceDialogBox implements Serializable
  - Serialized Fields
    
    options
    
    InterfaceOptions options

Package mgui.interfaces.tools.shapes

Class mgui.interfaces.tools.shapes.ToolCreateMeshFromPolylinesDialog extends DialogToolDialogBox implements Serializable

Serialized Fields

attrMesh
```
InterfaceAttributeTable attrMesh
```
chkResample
```
javax.swing.JCheckBox chkResample
```

cmbPolylinesSectionSet

javax.swing.JComboBox cmbPolylinesSectionSet

cmbShapeSet
```
javax.swing.JComboBox cmbShapeSet
```
lblAttributes
```
javax.swing.JLabel lblAttributes
```
lblMeshName
```
javax.swing.JLabel lblMeshName
```

lblPolylinesSectionSet

javax.swing.JLabel lblPolylinesSectionSet

lblShapeSet
```
javax.swing.JLabel lblShapeSet
```
scrMesh
```
javax.swing.JScrollPane scrMesh
```
txtMeshName
```
javax.swing.JTextField txtMeshName
```
txtResample
```
javax.swing.JTextField txtResample
```
update
```
boolean update
```

Class mgui.interfaces.tools.shapes.ToolCutMeshWithPlaneDialog extends DialogToolDialogBox implements Serializable

Serialized Fields

chkRetainOriginal
```
javax.swing.JCheckBox chkRetainOriginal
```
cmbMesh
```
javax.swing.JComboBox cmbMesh
```
cmbSectionSet
```
javax.swing.JComboBox cmbSectionSet
```
cmbShapeSet
```
javax.swing.JComboBox cmbShapeSet
```
lblMesh
```
javax.swing.JLabel lblMesh
```
lblPrefix
```
javax.swing.JLabel lblPrefix
```
lblSection
```
javax.swing.JLabel lblSection
```
lblSectionSet
```
javax.swing.JLabel lblSectionSet
```
lblShapeSet
```
javax.swing.JLabel lblShapeSet
```
txtPrefix
```
javax.swing.JTextField txtPrefix
```
txtSection
```
javax.swing.JTextField txtSection
```

Class mgui.interfaces.tools.shapes.ToolGetConvexHull2DDialog extends DialogToolDialogBox implements Serializable
- Serialized Fields
  - cmbPointSet
    
    javax.swing.JComboBox cmbPointSet
  - cmbSectionSet
    
    javax.swing.JComboBox cmbSectionSet
  - lblName
    
    javax.swing.JLabel lblName
  - lblPointSet
    
    javax.swing.JLabel lblPointSet
  - lblSectionSet
    
    javax.swing.JLabel lblSectionSet
  - txtName
    
    javax.swing.JTextField txtName

Class mgui.interfaces.tools.shapes.ToolGetMeshIntersectionPolylinesDialog extends DialogToolDialogBox implements Serializable

Serialized Fields

cmbMesh1
```
javax.swing.JComboBox cmbMesh1
```
cmbMesh2
```
javax.swing.JComboBox cmbMesh2
```
cmbShapeSet
```
javax.swing.JComboBox cmbShapeSet
```
lblMesh1
```
javax.swing.JLabel lblMesh1
```
lblMesh2
```
javax.swing.JLabel lblMesh2
```
lblName
```
javax.swing.JLabel lblName
```
lblShapeSet
```
javax.swing.JLabel lblShapeSet
```
txtName
```
javax.swing.JTextField txtName
```

Package mgui.interfaces.tools.shapes.util
- Class mgui.interfaces.tools.shapes.util.RulerDialog extends InterfaceDialogBox implements Serializable
  - Serialized Fields
    
    current_tool
    
    Tool current_tool
    
    icon
    
    javax.swing.Icon icon
    
    registered_tools
    
    java.util.ArrayList<Tool> registered_tools
    
    scrDistances
    
    javax.swing.JScrollPane scrDistances
    
    table
    
    javax.swing.JTable table
    
    table_model
    
    mgui.interfaces.tools.shapes.util.RulerDialog.RulerTableModel table_model
Package mgui.interfaces.trees
- Class mgui.interfaces.trees.InterfaceTree extends javax.swing.JTree implements Serializable
- Class mgui.interfaces.trees.InterfaceTreeCellEditor extends javax.swing.AbstractCellEditor implements Serializable
  - Serialized Fields
    
    currentEditor
    
    javax.swing.tree.TreeCellEditor currentEditor
    
    defEditor
    
    javax.swing.tree.TreeCellEditor defEditor
    
    editors
    
    java.util.HashMap<java.lang.Class,javax.swing.tree.TreeCellEditor> editors
- Class mgui.interfaces.trees.InterfaceTreeCellRenderer extends javax.swing.tree.DefaultTreeCellRenderer implements Serializable
  - Serialized Fields
    
    default_renderer
    
    javax.swing.tree.TreeCellRenderer default_renderer
    
    renderers
    
    java.util.HashMap<java.lang.Class,javax.swing.tree.TreeCellRenderer> renderers
- Class mgui.interfaces.trees.InterfaceTreeNode extends javax.swing.tree.DefaultMutableTreeNode implements Serializable
  - Serialized Fields
    
    isDestroyed
    
    boolean isDestroyed
    
    isMouseOverSelect
    
    boolean isMouseOverSelect
    
    isSelectable
    
    boolean isSelectable
    
    listeners
    
    java.util.ArrayList<TreeListener> listeners
    
    parent_tree
    
    javax.swing.JTree parent_tree
    
    popup_handler
    
    PopupMenuObject popup_handler
    
    popup_menu
    
    InterfacePopupMenu popup_menu
- Class mgui.interfaces.trees.InterfaceTreePanel extends InterfacePanel implements Serializable
  - Serialized Fields
    
    expanded_nodes
    
    java.util.ArrayList<java.lang.Object> expanded_nodes
    
    model
    
    javax.swing.tree.DefaultTreeModel model
    
    tree
    
    InterfaceTree tree
- Class mgui.interfaces.trees.InterfaceTreeTable extends javax.swing.JTable implements Serializable
  - Serialized Fields
    
    tree
    
    InterfaceTreeTable.TreeTableCellRenderer tree
- Class mgui.interfaces.trees.InterfaceTreeTable.TreeTableCellRenderer extends javax.swing.JTree implements Serializable
  - Serialized Fields
    
    visibleRow
    
    int visibleRow
- Class mgui.interfaces.trees.TreeEvent extends java.util.EventObject implements Serializable
  - Serialized Fields
    
    child_node
    
    InterfaceTreeNode child_node
    
    eventType
    
    TreeEvent.EventType eventType
    
    insert_at
    
    int insert_at
- Class mgui.interfaces.trees.TreeTableModelAdapter extends javax.swing.table.AbstractTableModel implements Serializable
  - Serialized Fields
    
    tree
    
    javax.swing.JTree tree
    
    treeTableModel
    
    TreeTableModel treeTableModel
Package mgui.interfaces.variables
- Class mgui.interfaces.variables.VariableEvent extends java.util.EventObject implements Serializable
- Class mgui.interfaces.variables.VariableException extends java.lang.Exception implements Serializable
Package mgui.interfaces.variables.tables
- Class mgui.interfaces.variables.tables.VariableTableModel extends InterfaceTableModel implements Serializable
  - Serialized Fields
    
    variable
    
    VariableInt<?> variable
Package mgui.interfaces.xml
- Class mgui.interfaces.xml.XMLException extends java.lang.Exception implements Serializable
- Class mgui.interfaces.xml.XMLInterruptException extends org.xml.sax.SAXException implements Serializable
Package mgui.io
- Class mgui.io.InterfaceIOException extends java.io.IOException implements Serializable

Package mgui.io.domestic.datasources

Class mgui.io.domestic.datasources.ExportDataTableDialogBox extends InterfaceIODialogBox implements Serializable

Serialized Fields

chkHasHeader
```
javax.swing.JCheckBox chkHasHeader
```
cmbDataSource
```
InterfaceComboBox cmbDataSource
```
cmbExcelFormat
```
javax.swing.JComboBox cmbExcelFormat
```
cmbOutputFormat
```
InterfaceComboBox cmbOutputFormat
```
cmdDirectory
```
javax.swing.JButton cmdDirectory
```
current_folder
```
java.io.File current_folder
```
current_source
```
DataSource current_source
```
data_export_table
```
javax.swing.JTable data_export_table
```

data_export_table_model

mgui.io.domestic.datasources.ExportDataTableDialogBox.ExportTableModel data_export_table_model

doUpdate
```
boolean doUpdate
```
is_ok
```
boolean is_ok
```
lblDataSource
```
javax.swing.JLabel lblDataSource
```
lblDelimiter
```
javax.swing.JLabel lblDelimiter
```
lblDirectory
```
javax.swing.JLabel lblDirectory
```
lblExcelFormat
```
javax.swing.JLabel lblExcelFormat
```
lblOutputFormat
```
javax.swing.JLabel lblOutputFormat
```
lblPrecision
```
javax.swing.JLabel lblPrecision
```
lblTables
```
javax.swing.JLabel lblTables
```
scrDataItems
```
javax.swing.JScrollPane scrDataItems
```
txtDelimiter
```
javax.swing.JTextField txtDelimiter
```
txtDirectory
```
javax.swing.JTextField txtDirectory
```
txtPrecision
```
javax.swing.JTextField txtPrecision
```

Class mgui.io.domestic.datasources.ImportDataTableDialogBox extends InterfaceIODialogBox implements Serializable

Serialized Fields

chkAddUID
```
javax.swing.JCheckBox chkAddUID
```
chkFailOnError
```
javax.swing.JCheckBox chkFailOnError
```
chkFirstIsKey
```
javax.swing.JCheckBox chkFirstIsKey
```
chkHasHeader
```
javax.swing.JCheckBox chkHasHeader
```
chkLowerCase
```
javax.swing.JCheckBox chkLowerCase
```

chkOverwriteExisting

javax.swing.JCheckBox chkOverwriteExisting

cmbDataSource
```
InterfaceComboBox cmbDataSource
```
cmbDelimiter
```
javax.swing.JComboBox cmbDelimiter
```
cmbTables
```
InterfaceComboBox cmbTables
```
cmdRenameTable
```
javax.swing.JButton cmdRenameTable
```
cmdScan
```
javax.swing.JButton cmdScan
```
current_source
```
DataSource current_source
```
do_update
```
boolean do_update
```
fields_table
```
javax.swing.JTable fields_table
```

fields_table_model

mgui.io.domestic.datasources.ImportDataTableDialogBox.ImportFieldsTableModel fields_table_model

file_map

java.util.HashMap<java.lang.String,java.io.File> file_map

is_ok
```
boolean is_ok
```
lblDelimiter
```
javax.swing.JLabel lblDelimiter
```
lblSource
```
javax.swing.JLabel lblSource
```
lblTables
```
javax.swing.JLabel lblTables
```
lblTextLength
```
javax.swing.JLabel lblTextLength
```

model_map

java.util.HashMap<java.lang.String,mgui.io.domestic.datasources.ImportDataTableDialogBox.ImportFieldsTableModel> model_map

scrFieldsTable
```
javax.swing.JScrollPane scrFieldsTable
```
txtAddUID
```
javax.swing.JTextField txtAddUID
```
txtDelimiter
```
javax.swing.JTextField txtDelimiter
```
txtHeaderStart
```
javax.swing.JTextField txtHeaderStart
```
txtTextLength
```
javax.swing.JTextField txtTextLength
```

Package mgui.io.domestic.maps
- Class mgui.io.domestic.maps.DiscreteColourMapInDialogBox extends InterfaceIODialogBox implements Serializable
  - Serialized Fields
    
    chkAsContinuous
    
    javax.swing.JCheckBox chkAsContinuous
    
    chkAsDiscrete
    
    javax.swing.JCheckBox chkAsDiscrete
    
    chkNormalized
    
    javax.swing.JCheckBox chkNormalized
    
    cmbFormat
    
    javax.swing.JComboBox cmbFormat
    
    do_update
    
    boolean do_update
    
    lblAnchors
    
    javax.swing.JLabel lblAnchors
    
    lblFormat
    
    javax.swing.JLabel lblFormat
    
    txtAnchors
    
    javax.swing.JTextField txtAnchors
- Class mgui.io.domestic.maps.DiscreteColourMapOutDialogBox extends InterfaceIODialogBox implements Serializable
  - Serialized Fields
    
    chkAlpha
    
    javax.swing.JCheckBox chkAlpha
    
    cmbMap
    
    javax.swing.JComboBox cmbMap
    
    lblMap
    
    javax.swing.JLabel lblMap
    
    lineLayout
    
    LineLayout lineLayout
- Class mgui.io.domestic.maps.NameMapOutDialogBox extends InterfaceIODialogBox implements Serializable
  - Serialized Fields
    
    lblDelim
    
    javax.swing.JLabel lblDelim
    
    lblNameMaps
    
    javax.swing.JLabel lblNameMaps
    
    lineLayout
    
    LineLayout lineLayout
    
    scrColumns
    
    javax.swing.JScrollPane scrColumns
    
    table
    
    javax.swing.JTable table
    
    txtDelim
    
    javax.swing.JTextField txtDelim
- Class mgui.io.domestic.maps.NameMapOutDialogBox.TableModel extends javax.swing.table.AbstractTableModel implements Serializable
  - Serialized Fields
    
    columns
    
    java.util.Vector<java.lang.String> columns
    
    data
    
    java.util.Vector<java.util.Vector> data

Package mgui.io.domestic.network

Class mgui.io.domestic.network.CorticalNetworkMatrixInDialogBox extends InterfaceIODialogBox implements Serializable

Serialized Fields

chkAddAll
```
javax.swing.JCheckBox chkAddAll
```
chkCreateGraph
```
javax.swing.JCheckBox chkCreateGraph
```
chkNormWeights
```
javax.swing.JCheckBox chkNormWeights
```
chkSetWeights
```
javax.swing.JCheckBox chkSetWeights
```
lblName
```
javax.swing.JLabel lblName
```
lblNonNumeric
```
javax.swing.JLabel lblNonNumeric
```
lblNormMax
```
javax.swing.JLabel lblNormMax
```
lblNormMin
```
javax.swing.JLabel lblNormMin
```
lineLayout
```
LineLayout lineLayout
```
txtName
```
javax.swing.JTextField txtName
```
txtNonNumeric
```
javax.swing.JTextField txtNonNumeric
```
txtNormMax
```
javax.swing.JTextField txtNormMax
```
txtNormMin
```
javax.swing.JTextField txtNormMin
```

Package mgui.io.domestic.shapes

Class mgui.io.domestic.shapes.MeshOptionsDialogBox extends InterfaceIODialogBox implements Serializable
- Serialized Fields
  - cmbMesh
    
    javax.swing.JComboBox cmbMesh
  - currentMesh
    
    Mesh3DInt currentMesh
  - doUpdate
    
    boolean doUpdate
  - lblMesh
    
    javax.swing.JLabel lblMesh
  - lineLayout
    
    LineLayout lineLayout

Class mgui.io.domestic.shapes.PointSet2DInputDialogBox extends InterfaceIODialogBox implements Serializable

Serialized Fields

cmbSectionSet
```
javax.swing.JComboBox cmbSectionSet
```
lblPolysets
```
javax.swing.JLabel lblPolysets
```
lblSection
```
javax.swing.JLabel lblSection
```
lblSectionSet
```
javax.swing.JLabel lblSectionSet
```
lineLayout
```
LineLayout lineLayout
```
scrColumns
```
javax.swing.JScrollPane scrColumns
```
table
```
javax.swing.JTable table
```
txtSection
```
javax.swing.JTextField txtSection
```

Class mgui.io.domestic.shapes.PointSet2DInputDialogBox.TableModel extends javax.swing.table.AbstractTableModel implements Serializable
- Serialized Fields
  - columns
    
    java.util.Vector<java.lang.String> columns
  - data
    
    java.util.Vector<java.util.Vector> data
Class mgui.io.domestic.shapes.PointSet3DDataInputDialogBox extends InterfaceIODialogBox implements Serializable
- Serialized Fields
  - cmbPointSet
    
    javax.swing.JComboBox cmbPointSet
  - lblColumns
    
    javax.swing.JLabel lblColumns
  - lblPointSet
    
    javax.swing.JLabel lblPointSet
  - lineLayout
    
    LineLayout lineLayout
  - scrColumns
    
    javax.swing.JScrollPane scrColumns
  - table
    
    javax.swing.JTable table
  - table_pos
    
    int table_pos
Class mgui.io.domestic.shapes.PointSet3DDataInputDialogBox.TableModel extends javax.swing.table.AbstractTableModel implements Serializable
- Serialized Fields
  - columns
    
    java.util.Vector<java.lang.String> columns
  - data
    
    java.util.Vector<java.util.Vector> data
  - file_col
    
    int file_col
Class mgui.io.domestic.shapes.PointSet3DInputDialogBox extends InterfaceIODialogBox implements Serializable
- Serialized Fields
  - chkAddToCurrent
    
    javax.swing.JCheckBox chkAddToCurrent
  - lblPolysets
    
    javax.swing.JLabel lblPolysets
  - lineLayout
    
    LineLayout lineLayout
  - scrColumns
    
    javax.swing.JScrollPane scrColumns
  - table
    
    javax.swing.JTable table
Class mgui.io.domestic.shapes.PointSet3DInputDialogBox.TableModel extends javax.swing.table.AbstractTableModel implements Serializable
- Serialized Fields
  - columns
    
    java.util.Vector<java.lang.String> columns
  - data
    
    java.util.Vector<java.util.Vector> data

Class mgui.io.domestic.shapes.PolygonSet3DInputDialogBox extends InterfaceIODialogBox implements Serializable

Serialized Fields

chkMinNodes
```
javax.swing.JCheckBox chkMinNodes
```
chkNewShapeSet
```
javax.swing.JCheckBox chkNewShapeSet
```
cmbParentShapeSet
```
InterfaceComboBox cmbParentShapeSet
```
lblParentShapeSet
```
javax.swing.JLabel lblParentShapeSet
```
lblPolysets
```
javax.swing.JLabel lblPolysets
```
lineLayout
```
LineLayout lineLayout
```
scrColumns
```
javax.swing.JScrollPane scrColumns
```
table
```
javax.swing.JTable table
```
txtMinNodes
```
javax.swing.JTextField txtMinNodes
```
txtNewShapeSet
```
javax.swing.JTextField txtNewShapeSet
```

Class mgui.io.domestic.shapes.PolygonSet3DInputDialogBox.TableModel extends javax.swing.table.AbstractTableModel implements Serializable
- Serialized Fields
  - columns
    
    java.util.Vector<java.lang.String> columns
  - data
    
    java.util.Vector<java.util.Vector> data

Class mgui.io.domestic.shapes.ShapeDataInputDialogBox extends InterfaceIODialogBox implements Serializable

Serialized Fields

chkAsOneColumn
```
javax.swing.JCheckBox chkAsOneColumn
```
chkHasHeader
```
javax.swing.JCheckBox chkHasHeader
```
cmbShape
```
InterfaceComboBox cmbShape
```

cmbSingleColumnType

javax.swing.JComboBox cmbSingleColumnType

column_table
```
javax.swing.JTable column_table
```
columns_per_file
```
int[] columns_per_file
```
current_files
```
java.io.File[] current_files
```
lblColumns
```
javax.swing.JLabel lblColumns
```
lblShape
```
javax.swing.JLabel lblShape
```
lblSingleColumn
```
javax.swing.JLabel lblSingleColumn
```
lblSingleColumnType
```
javax.swing.JLabel lblSingleColumnType
```
lstColumns
```
javax.swing.JScrollPane lstColumns
```

table_model

mgui.io.domestic.shapes.ShapeDataInputDialogBox.ColumnTableModel table_model

txtSingleColumn
```
javax.swing.JTextField txtSingleColumn
```

Class mgui.io.domestic.shapes.ShapeInputDialogBox extends InterfaceIODialogBox implements Serializable

Serialized Fields

cmbShapeSet
```
InterfaceComboBox cmbShapeSet
```
lblShapeSet
```
javax.swing.JLabel lblShapeSet
```
lblSurfaces
```
javax.swing.JLabel lblSurfaces
```
lineLayout
```
LineLayout lineLayout
```
scrColumns
```
javax.swing.JScrollPane scrColumns
```
table
```
javax.swing.JTable table
```
table_offset
```
int table_offset
```

Class mgui.io.domestic.shapes.ShapeInputDialogBox.TableModel extends javax.swing.table.AbstractTableModel implements Serializable
- Serialized Fields
  - columns
    
    java.util.Vector<java.lang.String> columns
  - data
    
    java.util.Vector<java.util.Vector> data
Class mgui.io.domestic.shapes.ShapeIOException extends java.io.IOException implements Serializable
Class mgui.io.domestic.shapes.ShapeModel3DInputDialog extends InterfaceIODialogBox implements Serializable
- Serialized Fields
  - chkMergeModel
    
    javax.swing.JCheckBox chkMergeModel
  - cmbConflicting
    
    javax.swing.JComboBox cmbConflicting
  - cmbMergeModel
    
    InterfaceComboBox cmbMergeModel
  - lblConflicting
    
    javax.swing.JLabel lblConflicting
  - temp_options
    
    ShapeModel3DInputOptions temp_options

Class mgui.io.domestic.shapes.ShapeModel3DOutputDialog extends InterfaceIODialogBox implements Serializable

Serialized Fields

chkCompress
```
javax.swing.JCheckBox chkCompress
```
chkOverwrite
```
javax.swing.JCheckBox chkOverwrite
```
chkSetSubfolders
```
javax.swing.JCheckBox chkSetSubfolders
```
chkShapesInFolder
```
javax.swing.JCheckBox chkShapesInFolder
```
cmbShapeModel
```
InterfaceComboBox cmbShapeModel
```
lblShapeModel
```
javax.swing.JLabel lblShapeModel
```
lblShapes
```
javax.swing.JLabel lblShapes
```
lineLayout
```
LineLayout lineLayout
```
scrShapesTable
```
javax.swing.JScrollPane scrShapesTable
```
table
```
javax.swing.JTable table
```

table_model

ShapeModel3DOutputDialog.TableModel table_model

temp_options
```
ShapeModel3DOutputOptions temp_options
```

txtShapesInFolder

javax.swing.JTextField txtShapesInFolder

update
```
boolean update
```

Class mgui.io.domestic.shapes.ShapeModel3DOutputDialog.TableModel extends javax.swing.table.AbstractTableModel implements Serializable

Serialized Fields

include

java.util.ArrayList<java.lang.Boolean> include

options

java.util.HashMap<InterfaceShape,XMLOutputOptions> options

selected

java.util.ArrayList<java.lang.Boolean> selected

shapes

java.util.ArrayList<InterfaceShape> shapes

Class mgui.io.domestic.shapes.ShapeOutputDialogBox extends InterfaceIODialogBox implements Serializable

Serialized Fields

cmbShapeModel
```
InterfaceComboBox cmbShapeModel
```
lblShapeModel
```
javax.swing.JLabel lblShapeModel
```
lblShapes
```
javax.swing.JLabel lblShapes
```
lineLayout
```
LineLayout lineLayout
```
scrShapes
```
javax.swing.JScrollPane scrShapes
```
table
```
javax.swing.JTable table
```

table_model

mgui.io.domestic.shapes.ShapeOutputDialogBox.ShapesTableModel table_model

Class mgui.io.domestic.shapes.SurfaceDataInputDialogBox extends InterfaceIODialogBox implements Serializable
- Serialized Fields
  - cmbMesh
    
    InterfaceComboBox cmbMesh
  - lblColumns
    
    javax.swing.JLabel lblColumns
  - lblMesh
    
    javax.swing.JLabel lblMesh
  - lineLayout
    
    LineLayout lineLayout
  - scrColumns
    
    javax.swing.JScrollPane scrColumns
  - table
    
    javax.swing.JTable table
  - table_pos
    
    int table_pos
Class mgui.io.domestic.shapes.SurfaceDataInputDialogBox.TableModel extends javax.swing.table.AbstractTableModel implements Serializable
- Serialized Fields
  - columns
    
    java.util.Vector<java.lang.String> columns
  - data
    
    java.util.Vector<java.util.Vector> data
  - file_col
    
    int file_col
Class mgui.io.domestic.shapes.SurfaceDataOutputDialogBox extends MeshOptionsDialogBox implements Serializable
- Serialized Fields
  - lblColumns
    
    javax.swing.JLabel lblColumns
  - lblPrefix
    
    javax.swing.JLabel lblPrefix
  - scrColumns
    
    javax.swing.JScrollPane scrColumns
  - table
    
    javax.swing.JTable table
  - txtPrefix
    
    javax.swing.JTextField txtPrefix
Class mgui.io.domestic.shapes.SurfaceDataOutputDialogBox.TableModel extends javax.swing.table.AbstractTableModel implements Serializable
- Serialized Fields
  - columns
    
    java.util.Vector<java.lang.String> columns
  - data
    
    java.util.Vector<java.util.Vector<java.lang.Object>> data

Class mgui.io.domestic.shapes.SurfaceInputDialogBox extends InterfaceIODialogBox implements Serializable

Serialized Fields

chkMergeShapes
```
javax.swing.JCheckBox chkMergeShapes
```
cmbShapeSet
```
InterfaceComboBox cmbShapeSet
```
lblShapeSet
```
javax.swing.JLabel lblShapeSet
```
lblSurfaces
```
javax.swing.JLabel lblSurfaces
```
lineLayout
```
LineLayout lineLayout
```
scrColumns
```
javax.swing.JScrollPane scrColumns
```
table
```
javax.swing.JTable table
```
table_offset
```
int table_offset
```
txtMergeShape
```
javax.swing.JTextField txtMergeShape
```

Class mgui.io.domestic.shapes.SurfaceInputDialogBox.TableModel extends javax.swing.table.AbstractTableModel implements Serializable
- Serialized Fields
  - columns
    
    java.util.Vector<java.lang.String> columns
  - data
    
    java.util.Vector<java.util.Vector> data
Class mgui.io.domestic.shapes.SurfaceOutputDialogBox extends InterfaceIODialogBox implements Serializable
- Serialized Fields
  - cmbMesh
    
    javax.swing.JComboBox cmbMesh
  - lblMesh
    
    javax.swing.JLabel lblMesh
  - lineLayout
    
    LineLayout lineLayout
Class mgui.io.domestic.shapes.VectorSet3DInputDialogBox extends InterfaceIODialogBox implements Serializable
- Serialized Fields
  - chkAddToCurrent
    
    javax.swing.JCheckBox chkAddToCurrent
  - lblPolysets
    
    javax.swing.JLabel lblPolysets
  - lineLayout
    
    LineLayout lineLayout
  - scrColumns
    
    javax.swing.JScrollPane scrColumns
  - table
    
    javax.swing.JTable table
Class mgui.io.domestic.shapes.VectorSet3DInputDialogBox.TableModel extends javax.swing.table.AbstractTableModel implements Serializable
- Serialized Fields
  - columns
    
    java.util.Vector<java.lang.String> columns
  - data
    
    java.util.Vector<java.util.Vector> data

Class mgui.io.domestic.shapes.VolumeInputDialogBox extends InterfaceIODialogBox implements Serializable

Serialized Fields

bytesPerVoxel
```
int bytesPerVoxel
```
chkAxes
```
javax.swing.JCheckBox chkAxes
```
chkDataDim
```
javax.swing.JCheckBox chkDataDim
```
chkDataType
```
javax.swing.JCheckBox chkDataType
```
chkFlipX
```
javax.swing.JCheckBox chkFlipX
```
chkFlipY
```
javax.swing.JCheckBox chkFlipY
```
chkFlipZ
```
javax.swing.JCheckBox chkFlipZ
```
chkGeomDim
```
javax.swing.JCheckBox chkGeomDim
```
chkImgOrigin
```
javax.swing.JCheckBox chkImgOrigin
```
chkSetAlpha
```
javax.swing.JCheckBox chkSetAlpha
```
cmbColourMap
```
InterfaceComboBox cmbColourMap
```
cmbFileFormat
```
javax.swing.JComboBox cmbFileFormat
```
cmdBrowse
```
javax.swing.JButton cmdBrowse
```
cmdColourMap
```
javax.swing.JButton cmdColourMap
```
dataMax
```
double dataMax
```
dataMin
```
double dataMin
```

filters

java.util.ArrayList<WildcardFileFilter> filters

formatIsAlpha
```
boolean formatIsAlpha
```
hasValidHeader
```
boolean hasValidHeader
```
lblColourMap
```
javax.swing.JLabel lblColourMap
```
lblDataDim
```
javax.swing.JLabel lblDataDim
```
lblDataType
```
javax.swing.JLabel lblDataType
```
lblFileFormat
```
javax.swing.JLabel lblFileFormat
```
lblFileName
```
javax.swing.JLabel lblFileName
```
lblFlipX
```
javax.swing.JLabel lblFlipX
```
lblFlipY
```
javax.swing.JLabel lblFlipY
```
lblFlipZ
```
javax.swing.JLabel lblFlipZ
```
lblGeomDim
```
javax.swing.JLabel lblGeomDim
```
lblHeaderInfo
```
javax.swing.JLabel lblHeaderInfo
```
lblImgOrigin
```
javax.swing.JLabel lblImgOrigin
```
lblOptions
```
javax.swing.JLabel lblOptions
```
lblSetAlpha
```
javax.swing.JLabel lblSetAlpha
```
lblSetGrid
```
javax.swing.JLabel lblSetGrid
```
lineLayout
```
LineLayout lineLayout
```
show_checks
```
boolean show_checks
```
transferType
```
int transferType
```
txtDataDim
```
javax.swing.JTextField txtDataDim
```
txtDataType
```
javax.swing.JTextField txtDataType
```
txtFileName
```
javax.swing.JTextField txtFileName
```
txtGeomDim
```
javax.swing.JTextField txtGeomDim
```
txtImgOrigin
```
javax.swing.JTextField txtImgOrigin
```

types

java.util.ArrayList<InterfaceIOType> types

volume
```
Volume3DInt volume
```
volume_file
```
java.io.File volume_file
```
xAxis
```
org.jogamp.vecmath.Vector3f xAxis
```
xDim
```
int xDim
```
xOrigin
```
float xOrigin
```
xSpace
```
float xSpace
```
yAxis
```
org.jogamp.vecmath.Vector3f yAxis
```
yDim
```
int yDim
```
yOrigin
```
float yOrigin
```
ySpace
```
float ySpace
```
zAxis
```
org.jogamp.vecmath.Vector3f zAxis
```
zDim
```
int zDim
```
zOrigin
```
float zOrigin
```
zSpace
```
float zSpace
```

Class mgui.io.domestic.shapes.VolumeOutputDialogBox extends InterfaceIODialogBox implements Serializable

Serialized Fields

chkApplyMasks
```
javax.swing.JCheckBox chkApplyMasks
```
chkCompress
```
javax.swing.JCheckBox chkCompress
```
chkFlipX
```
javax.swing.JCheckBox chkFlipX
```
chkFlipY
```
javax.swing.JCheckBox chkFlipY
```
chkFlipZ
```
javax.swing.JCheckBox chkFlipZ
```
cmbColumn
```
javax.swing.JComboBox cmbColumn
```
cmbDataType
```
javax.swing.JComboBox cmbDataType
```
cmbVolume
```
InterfaceComboBox cmbVolume
```
lblColumn
```
javax.swing.JLabel lblColumn
```
lblDataType
```
javax.swing.JLabel lblDataType
```
lblFlipX
```
javax.swing.JLabel lblFlipX
```
lblFlipY
```
javax.swing.JLabel lblFlipY
```
lblFlipZ
```
javax.swing.JLabel lblFlipZ
```
lblIntercept
```
javax.swing.JLabel lblIntercept
```
lblSlope
```
javax.swing.JLabel lblSlope
```
lblVolume
```
javax.swing.JLabel lblVolume
```
txtIntercept
```
javax.swing.JTextField txtIntercept
```
txtSlope
```
javax.swing.JTextField txtSlope
```

Package mgui.io.domestic.variables
- Class mgui.io.domestic.variables.MatrixInDialogBox extends InterfaceIODialogBox implements Serializable
  - Serialized Fields
    
    chkHeader
    
    javax.swing.JCheckBox chkHeader
    
    cmbFormat
    
    javax.swing.JComboBox cmbFormat
    
    cmbLoadAs
    
    javax.swing.JComboBox cmbLoadAs
    
    file_table
    
    javax.swing.JTable file_table
    
    lblFiles
    
    javax.swing.JLabel lblFiles
    
    lblFormat
    
    javax.swing.JLabel lblFormat
    
    lblLoadAs
    
    javax.swing.JLabel lblLoadAs
    
    scrFiles
    
    javax.swing.JScrollPane scrFiles
- Class mgui.io.domestic.variables.MatrixInDialogBox.TableModel extends javax.swing.table.AbstractTableModel implements Serializable
  - Serialized Fields
    
    columns
    
    java.util.ArrayList<java.lang.String> columns
    
    data
    
    java.util.ArrayList<java.util.ArrayList<java.lang.String>> data

Package mgui.io.domestic.videos

Class mgui.io.domestic.videos.ImageStackVideoDialog extends VideoOutputDialog implements Serializable

Serialized Fields

chkResample
```
javax.swing.JCheckBox chkResample
```
chkUseBuffer
```
javax.swing.JCheckBox chkUseBuffer
```
cmbFormat
```
javax.swing.JComboBox cmbFormat
```
lblFormat
```
javax.swing.JLabel lblFormat
```
lblImagesPerSecond
```
javax.swing.JLabel lblImagesPerSecond
```
lblStart
```
javax.swing.JLabel lblStart
```
lblStop
```
javax.swing.JLabel lblStop
```
lblWait
```
javax.swing.JLabel lblWait
```

txtImagesPerSecond

javax.swing.JTextField txtImagesPerSecond

txtResample
```
javax.swing.JTextField txtResample
```
txtStart
```
javax.swing.JTextField txtStart
```
txtStop
```
javax.swing.JTextField txtStop
```
txtWait
```
javax.swing.JTextField txtWait
```

Class mgui.io.domestic.videos.VideoOutputDialog extends InterfaceOptionsDialogBox implements Serializable
- Serialized Fields
  - panel
    
    InterfacePanel panel

Package mgui.io.domestic.views
- Class mgui.io.domestic.views.View3DOutputDialogBox extends InterfaceIODialogBox implements Serializable
  - Serialized Fields
    
    lblSelect
    
    javax.swing.JLabel lblSelect
    
    scrViews
    
    javax.swing.JScrollPane scrViews
    
    view_list
    
    javax.swing.JTable view_list
    
    view_list_model
    
    mgui.io.domestic.views.View3DOutputDialogBox.ViewListModel view_list_model
Package mgui.io.foreign.caret
- Class mgui.io.foreign.caret.CaretAreaColourInDialogBox extends InterfaceIODialogBox implements Serializable
  - Serialized Fields
    
    cmbNameMap
    
    javax.swing.JComboBox cmbNameMap
    
    lblNameMap
    
    javax.swing.JLabel lblNameMap
    
    lineLayout
    
    LineLayout lineLayout
- Class mgui.io.foreign.caret.CaretAreaColourOutDialogBox extends InterfaceIODialogBox implements Serializable
  - Serialized Fields
    
    cmbColourMap
    
    javax.swing.JComboBox cmbColourMap
    
    lblColourMap
    
    javax.swing.JLabel lblColourMap
- Class mgui.io.foreign.caret.CaretMetricInDialogBox extends SurfaceDataInputDialogBox implements Serializable
- Class mgui.io.foreign.caret.CaretMetricOptionsDialog extends InterfaceDialogBox implements Serializable
  - Serialized Fields
    
    cmbMesh
    
    javax.swing.JComboBox cmbMesh
    
    lblMesh
    
    javax.swing.JLabel lblMesh
    
    lineLayout
    
    LineLayout lineLayout
    
    type
    
    int type
- Class mgui.io.foreign.caret.CaretPaintInDialogBox extends SurfaceDataInputDialogBox implements Serializable
  - Serialized Fields
    
    chkNameMap
    
    javax.swing.JCheckBox chkNameMap
    
    lblNameMap
    
    javax.swing.JLabel lblNameMap
    
    txtNameMap
    
    javax.swing.JTextField txtNameMap
- Class mgui.io.foreign.caret.CaretPaintOptionsDialog extends InterfaceDialogBox implements Serializable
  - Serialized Fields
    
    cmbMesh
    
    javax.swing.JComboBox cmbMesh
    
    Deprecated.
    
    lblMesh
    
    javax.swing.JLabel lblMesh
    
    Deprecated.
    
    lineLayout
    
    LineLayout lineLayout
    
    Deprecated.
- Class mgui.io.foreign.caret.CaretSurfaceInDialogBox extends SurfaceInputDialogBox implements Serializable
  - Serialized Fields
    
    lblSurfaceName
    
    javax.swing.JLabel lblSurfaceName
    
    txtSurfaceName
    
    javax.swing.JTextField txtSurfaceName
- Class mgui.io.foreign.caret.CaretSurfaceOutDialogBox extends SurfaceOutputDialogBox implements Serializable
  - Serialized Fields
    
    lblCoord
    
    javax.swing.JLabel lblCoord
    
    lblCoordComment
    
    javax.swing.JLabel lblCoordComment
    
    lblCoordConfig
    
    javax.swing.JLabel lblCoordConfig
    
    lblCoordFile
    
    javax.swing.JLabel lblCoordFile
    
    lblCoordFrame
    
    javax.swing.JLabel lblCoordFrame
    
    lblCoordOrient
    
    javax.swing.JLabel lblCoordOrient
    
    lblCoordStruct
    
    javax.swing.JLabel lblCoordStruct
    
    lblTopo
    
    javax.swing.JLabel lblTopo
    
    lblTopoComment
    
    javax.swing.JLabel lblTopoComment
    
    lblTopoFile
    
    javax.swing.JLabel lblTopoFile
    
    lblTopoPerim
    
    javax.swing.JLabel lblTopoPerim
    
    lblTopoRes
    
    javax.swing.JLabel lblTopoRes
    
    lblTopoSample
    
    javax.swing.JLabel lblTopoSample
    
    scrCoordComment
    
    javax.swing.JScrollPane scrCoordComment
    
    scrTopoComment
    
    javax.swing.JScrollPane scrTopoComment
    
    txtCoordComment
    
    javax.swing.JTextArea txtCoordComment
    
    txtCoordConfig
    
    javax.swing.JTextField txtCoordConfig
    
    txtCoordFile
    
    javax.swing.JTextField txtCoordFile
    
    txtCoordFrame
    
    javax.swing.JTextField txtCoordFrame
    
    txtCoordOrient
    
    javax.swing.JTextField txtCoordOrient
    
    txtCoordStruct
    
    javax.swing.JTextField txtCoordStruct
    
    txtTopoComment
    
    javax.swing.JTextArea txtTopoComment
    
    txtTopoFile
    
    javax.swing.JTextField txtTopoFile
    
    txtTopoPerim
    
    javax.swing.JTextField txtTopoPerim
    
    txtTopoRes
    
    javax.swing.JTextField txtTopoRes
    
    txtTopoSample
    
    javax.swing.JTextField txtTopoSample
Package mgui.io.foreign.freesurfer
- Class mgui.io.foreign.freesurfer.FreesurferVertexDataDialogBox extends SurfaceDataInputDialogBox implements Serializable
  - Serialized Fields
    
    cmbFormat
    
    InterfaceComboBox cmbFormat
    
    lblFormat
    
    javax.swing.JLabel lblFormat
Package mgui.io.foreign.minc
- Class mgui.io.foreign.minc.MincSurfaceDataInDialogBox extends SurfaceDataInputDialogBox implements Serializable
- Class mgui.io.foreign.minc.MincSurfaceDataOutDialogBox extends SurfaceDataOutputDialogBox implements Serializable
- Class mgui.io.foreign.minc.MincSurfaceOutDialog extends CaretMetricOptionsDialog implements Serializable

Package mgui.io.foreign.pajek

Class mgui.io.foreign.pajek.PajekGraphInputDialog extends InterfaceIODialogBox implements Serializable

Serialized Fields

current_files
```
java.io.File[] current_files
```
graphs_table
```
javax.swing.JTable graphs_table
```
lblGraphs
```
javax.swing.JLabel lblGraphs
```
lineLayout
```
LineLayout lineLayout
```
scrGraphs
```
javax.swing.JScrollPane scrGraphs
```

table_model

mgui.io.foreign.pajek.PajekGraphInputDialog.GraphTableModel table_model

Package mgui.io.standard.gifti
- Class mgui.io.standard.gifti.GiftiSurfaceInDialogBox extends SurfaceInputDialogBox implements Serializable
  - Serialized Fields
    
    chkSurface
    
    javax.swing.JCheckBox chkSurface
    
    cmbSurface
    
    InterfaceComboBox cmbSurface
    
    current_surface
    
    Mesh3DInt current_surface
- Class mgui.io.standard.gifti.GiftiSurfaceOutDialogBox extends SurfaceOutputDialogBox implements Serializable
  - Serialized Fields
    
    cmbByteOrder
    
    javax.swing.JComboBox cmbByteOrder
    
    cmbEncoding
    
    javax.swing.JComboBox cmbEncoding
    
    cmbWriteColumns
    
    javax.swing.JComboBox cmbWriteColumns
    
    lblByteOrder
    
    javax.swing.JLabel lblByteOrder
    
    lblDecimals
    
    javax.swing.JLabel lblDecimals
    
    lblEncoding
    
    javax.swing.JLabel lblEncoding
    
    lblWriteColumns
    
    javax.swing.JLabel lblWriteColumns
    
    txtDecimals
    
    javax.swing.JTextField txtDecimals
Package mgui.io.standard.nifti
- Class mgui.io.standard.nifti.NiftiMetadata extends Nifti1Dataset implements Serializable
  
  serialVersionUID:
  
  -3417560084592704597L
  - Serialized Fields
    
    axis_r
    
    org.jogamp.vecmath.Vector3f axis_r
    
    axis_s
    
    org.jogamp.vecmath.Vector3f axis_s
    
    axis_t
    
    org.jogamp.vecmath.Vector3f axis_t
    
    byteOrder
    
    java.nio.ByteOrder byteOrder
    
    compress
    
    boolean compress

Package mgui.io.standard.xml.svg

Class mgui.io.standard.xml.svg.SVGOptionsDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

actionCommand
```
java.lang.String actionCommand
```
chkColourMap
```
javax.swing.JCheckBox chkColourMap
```
chkMultiFiles
```
javax.swing.JCheckBox chkMultiFiles
```
chkSeqColourMap
```
javax.swing.JCheckBox chkSeqColourMap
```
chkSeqMultiFiles
```
javax.swing.JCheckBox chkSeqMultiFiles
```
chkSetFillColour
```
javax.swing.JCheckBox chkSetFillColour
```
chkSetLineColour
```
javax.swing.JCheckBox chkSetLineColour
```

chkSingleMultiFiles

javax.swing.JCheckBox chkSingleMultiFiles

chkTableColourMap
```
javax.swing.JCheckBox chkTableColourMap
```

chkTableMultiFiles

javax.swing.JCheckBox chkTableMultiFiles

cmbSectionSet
```
javax.swing.JComboBox cmbSectionSet
```
cmdApply
```
javax.swing.JButton cmdApply
```
cmdCancel
```
javax.swing.JButton cmdCancel
```
cmdTableColourMap
```
javax.swing.JButton cmdTableColourMap
```
cmdTableMultiFiles
```
javax.swing.JButton cmdTableMultiFiles
```
colourMapFile
```
java.io.File colourMapFile
```
filePanel
```
InterfaceFilePanel filePanel
```
lblSectionSet
```
javax.swing.JLabel lblSectionSet
```

listeners

java.util.ArrayList<java.awt.event.ActionListener> listeners

multiTableFile
```
java.io.File multiTableFile
```
SVGOptions
```
SVGInputOptions SVGOptions
```

tableFileFilter

javax.swing.filechooser.FileNameExtensionFilter tableFileFilter

txtSeqColourMap
```
javax.swing.JTextField txtSeqColourMap
```
txtSeqMultiFiles
```
javax.swing.JTextField txtSeqMultiFiles
```

txtSingleMultiFiles

javax.swing.JTextField txtSingleMultiFiles

txtTableColourMap

javax.swing.JTextField txtTableColourMap

txtTableMultiFiles

javax.swing.JTextField txtTableMultiFiles

Package mgui.models.dynamic
- Class mgui.models.dynamic.DynamicModelException extends java.lang.Exception implements Serializable
Package mgui.models.exceptions
- Class mgui.models.exceptions.DynamicModelException extends java.lang.Exception implements Serializable
Package mgui.models.networks
- Class mgui.models.networks.NetworkEvent extends java.util.EventObject implements Serializable
  - Serialized Fields
    
    eventCode
    
    int eventCode
- Class mgui.models.networks.NetworkException extends DynamicModelException implements Serializable
Package mgui.models.networks.components
- Class mgui.models.networks.components.NetworkComponentEvent extends java.util.EventObject implements Serializable
  - Serialized Fields
    
    eventCode
    
    int eventCode

Package mgui.morph.sections

Class mgui.morph.sections.InterfaceMorphPanel extends InterfacePanel implements Serializable

Serialized Fields

attrSet
```
MorphSections3DInt attrSet
```
attrSetPanel
```
InterfaceAttributePanel attrSetPanel
```
chkCornerPts
```
javax.swing.JCheckBox chkCornerPts
```
chkSplineX
```
javax.swing.JCheckBox chkSplineX
```
chkSplineY
```
javax.swing.JCheckBox chkSplineY
```
chkUseAllSections
```
javax.swing.JCheckBox chkUseAllSections
```
chkUseAllSelSet
```
javax.swing.JCheckBox chkUseAllSelSet
```
chkUseAllShapes
```
javax.swing.JCheckBox chkUseAllShapes
```
chkUseSelSet
```
javax.swing.JCheckBox chkUseSelSet
```

chkUseSpecSections

javax.swing.JCheckBox chkUseSpecSections

cmbSelSet
```
javax.swing.JComboBox cmbSelSet
```
cmdCorners
```
javax.swing.JButton cmdCorners
```
cmdExecute
```
javax.swing.JButton cmdExecute
```
currentSet
```
SectionSet3DInt currentSet
```
ihpAttrSet
```
InterfaceHideablePanel ihpAttrSet
```
lblAngleThreshold
```
javax.swing.JLabel lblAngleThreshold
```
lblCurrentSet
```
javax.swing.JLabel lblCurrentSet
```
lblIterations
```
javax.swing.JLabel lblIterations
```
lblLenThreshold
```
javax.swing.JLabel lblLenThreshold
```
lblMinAngle
```
javax.swing.JLabel lblMinAngle
```
lblOutputHeader
```
javax.swing.JLabel lblOutputHeader
```
lblParamHeader
```
javax.swing.JLabel lblParamHeader
```
lblSectionHeader
```
javax.swing.JLabel lblSectionHeader
```
lblShapeAttr
```
javax.swing.JLabel lblShapeAttr
```
lblShapeHeader
```
javax.swing.JLabel lblShapeHeader
```
lblShapeName
```
javax.swing.JLabel lblShapeName
```
lblSplineFactor
```
javax.swing.JLabel lblSplineFactor
```
lblSplineX
```
javax.swing.JLabel lblSplineX
```
lblSplineY
```
javax.swing.JLabel lblSplineY
```
lblTitle
```
javax.swing.JLabel lblTitle
```
lblUseAllSections
```
javax.swing.JLabel lblUseAllSections
```
lblUseSpecSections
```
javax.swing.JLabel lblUseSpecSections
```
lblUseSpecSections2
```
javax.swing.JLabel lblUseSpecSections2
```
shapeSet
```
ShapeSet3DInt shapeSet
```

txtAngleThreshold

javax.swing.JTextField txtAngleThreshold

txtCurrentSet2
```
javax.swing.JTextField txtCurrentSet2
```
txtIterations
```
javax.swing.JTextField txtIterations
```
txtLenThreshold
```
javax.swing.JTextField txtLenThreshold
```
txtMinAngle
```
javax.swing.JTextField txtMinAngle
```
txtShapeName
```
javax.swing.JTextField txtShapeName
```
txtSplineFactor
```
javax.swing.JTextField txtSplineFactor
```
txtUseSectFrom
```
javax.swing.JTextField txtUseSectFrom
```
txtUseSectTo
```
javax.swing.JTextField txtUseSectTo
```

Class mgui.morph.sections.InterfaceMorphPanel2 extends InterfacePanel implements Serializable

Serialized Fields

attrMeshPanel
```
InterfaceAttributePanel attrMeshPanel
```
attrSet
```
SectionSet3DInt attrSet
```
attrSetPanel
```
InterfaceAttributePanel attrSetPanel
```
chkAddPolylines
```
javax.swing.JCheckBox chkAddPolylines
```
chkCornerPts
```
javax.swing.JCheckBox chkCornerPts
```
chkLabelNodes
```
javax.swing.JCheckBox chkLabelNodes
```
chkMapMulti
```
javax.swing.JCheckBox chkMapMulti
```
chkSpline
```
javax.swing.JCheckBox chkSpline
```
chkSurface
```
javax.swing.JCheckBox chkSurface
```
chkSurfaceConst
```
javax.swing.JCheckBox chkSurfaceConst
```
chkUseAllSections
```
javax.swing.JCheckBox chkUseAllSections
```
chkUseAllSelSet
```
javax.swing.JCheckBox chkUseAllSelSet
```
chkUseAllShapes
```
javax.swing.JCheckBox chkUseAllShapes
```
chkUseSelSet
```
javax.swing.JCheckBox chkUseSelSet
```

chkUseSpecSections

javax.swing.JCheckBox chkUseSpecSections

cmbCurrentSet
```
javax.swing.JComboBox cmbCurrentSet
```
cmbSelSet
```
javax.swing.JComboBox cmbSelSet
```
cmdCorners
```
javax.swing.JButton cmdCorners
```
cmdExecute
```
javax.swing.JButton cmdExecute
```
currentSet
```
SectionSet3DInt currentSet
```
displayPanel
```
InterfaceDisplayPanel displayPanel
```
ihpAttrMesh
```
InterfaceHideablePanel ihpAttrMesh
```
ihpAttrSet
```
InterfaceHideablePanel ihpAttrSet
```
lblAngleThreshold
```
javax.swing.JLabel lblAngleThreshold
```
lblCurrentSet
```
javax.swing.JLabel lblCurrentSet
```
lblExecuteHeader
```
CategoryTitle lblExecuteHeader
```
lblIterations
```
javax.swing.JLabel lblIterations
```
lblLenThreshold
```
javax.swing.JLabel lblLenThreshold
```
lblMeshAttr
```
javax.swing.JLabel lblMeshAttr
```
lblMeshHeader
```
CategoryTitle lblMeshHeader
```
lblMinAngle
```
javax.swing.JLabel lblMinAngle
```
lblOutputHeader
```
CategoryTitle lblOutputHeader
```
lblParamHeader
```
CategoryTitle lblParamHeader
```
lblSectionHeader
```
CategoryTitle lblSectionHeader
```
lblShapeAttr
```
javax.swing.JLabel lblShapeAttr
```
lblShapeHeader
```
CategoryTitle lblShapeHeader
```
lblShapeName
```
javax.swing.JLabel lblShapeName
```
lblSplineFactor
```
javax.swing.JLabel lblSplineFactor
```
lblTitle
```
CategoryTitle lblTitle
```
lblUseAllSections
```
javax.swing.JLabel lblUseAllSections
```
lblUseSpecSections
```
javax.swing.JLabel lblUseSpecSections
```
lblUseSpecSections2
```
javax.swing.JLabel lblUseSpecSections2
```
meshAttr
```
AttributeList meshAttr
```
shapeSet
```
ShapeSet3DInt shapeSet
```

txtAngleThreshold

javax.swing.JTextField txtAngleThreshold

txtCurrentSet2
```
javax.swing.JTextField txtCurrentSet2
```
txtIterations
```
javax.swing.JTextField txtIterations
```
txtLenThreshold
```
javax.swing.JTextField txtLenThreshold
```
txtMinAngle
```
javax.swing.JTextField txtMinAngle
```
txtShapeName
```
javax.swing.JTextField txtShapeName
```
txtSplineFactor
```
javax.swing.JTextField txtSplineFactor
```
txtUseSectFrom
```
javax.swing.JTextField txtUseSectFrom
```
txtUseSectTo
```
javax.swing.JTextField txtUseSectTo
```

Class mgui.morph.sections.InterfaceRadialRep extends InterfacePanel implements Serializable

Serialized Fields

chkFixedRadius
```
javax.swing.JCheckBox chkFixedRadius
```
chkGenCurrentSet
```
javax.swing.JCheckBox chkGenCurrentSet
```
chkGenSelSet
```
javax.swing.JCheckBox chkGenSelSet
```
chkGroomMaxLen
```
javax.swing.JCheckBox chkGroomMaxLen
```
chkGroomMinLen
```
javax.swing.JCheckBox chkGroomMinLen
```
chkMaxRadius
```
javax.swing.JCheckBox chkMaxRadius
```
chkOverwrite
```
javax.swing.JCheckBox chkOverwrite
```
chkUseCenterPt
```
javax.swing.JCheckBox chkUseCenterPt
```
chkUseControls
```
javax.swing.JCheckBox chkUseControls
```
chkUseFixedPt
```
javax.swing.JCheckBox chkUseFixedPt
```
chkUseOffset
```
javax.swing.JCheckBox chkUseOffset
```
cmbDisplayStle
```
javax.swing.JComboBox cmbDisplayStle
```
CMD_ASSIGN_CORNERS
```
java.lang.String CMD_ASSIGN_CORNERS
```
CMD_GEN_CORNERS
```
java.lang.String CMD_GEN_CORNERS
```
CMD_GEN_MULTI
```
java.lang.String CMD_GEN_MULTI
```
CMD_GEN_SEL
```
java.lang.String CMD_GEN_SEL
```
CMD_GROOM_POLY
```
java.lang.String CMD_GROOM_POLY
```
cmdAssignCornerPts
```
javax.swing.JButton cmdAssignCornerPts
```
cmdGenCornerPts
```
javax.swing.JButton cmdGenCornerPts
```
cmdGenMulti
```
javax.swing.JButton cmdGenMulti
```
cmdGenSel
```
javax.swing.JButton cmdGenSel
```
cmdGroomPolys
```
javax.swing.JButton cmdGroomPolys
```
currentRep
```
RadialRep2DInt currentRep
```
currentSet
```
SectionSet3DInt currentSet
```
displayPanel
```
InterfaceDisplayPanel displayPanel
```
lblAngleThreshold
```
javax.swing.JLabel lblAngleThreshold
```
lblCenterHeader
```
javax.swing.JLabel lblCenterHeader
```
lblCircleHeader
```
javax.swing.JLabel lblCircleHeader
```
lblControlHeader
```
javax.swing.JLabel lblControlHeader
```
lblCornerPts
```
javax.swing.JLabel lblCornerPts
```
lblCurrentSet
```
javax.swing.JLabel lblCurrentSet
```
lblDisplayStle
```
javax.swing.JLabel lblDisplayStle
```
lblFixedRadius
```
javax.swing.JLabel lblFixedRadius
```
lblGenCurrentSet
```
javax.swing.JLabel lblGenCurrentSet
```
lblGenHeader
```
javax.swing.JLabel lblGenHeader
```
lblGenMultiple
```
javax.swing.JLabel lblGenMultiple
```
lblGenSelSet
```
javax.swing.JLabel lblGenSelSet
```
lblGroomHeader
```
javax.swing.JLabel lblGroomHeader
```
lblGroomMinAngle
```
javax.swing.JLabel lblGroomMinAngle
```
lblLenThreshold
```
javax.swing.JLabel lblLenThreshold
```
lblMaxRadius
```
javax.swing.JLabel lblMaxRadius
```
lblRadiusHeader
```
javax.swing.JLabel lblRadiusHeader
```
lblTitle
```
javax.swing.JLabel lblTitle
```
lblUseCenterPt
```
javax.swing.JLabel lblUseCenterPt
```
lblUseFixedPt
```
javax.swing.JLabel lblUseFixedPt
```
lblUseFixedPt2
```
javax.swing.JLabel lblUseFixedPt2
```
lblUseOffset
```
javax.swing.JLabel lblUseOffset
```
lblUseOffset2
```
javax.swing.JLabel lblUseOffset2
```
repAttr
```
AttributeList repAttr
```
shapeSet
```
ShapeSet3DInt shapeSet
```

txtAngleThreshold

javax.swing.JTextField txtAngleThreshold

txtCurrentSet2
```
javax.swing.JTextField txtCurrentSet2
```
txtFixedPtX
```
javax.swing.JTextField txtFixedPtX
```
txtFixedPtY
```
javax.swing.JTextField txtFixedPtY
```
txtFixedRadius
```
javax.swing.JTextField txtFixedRadius
```
txtGroomMaxLen
```
javax.swing.JTextField txtGroomMaxLen
```
txtGroomMinAngle
```
javax.swing.JTextField txtGroomMinAngle
```
txtGroomMinLen
```
javax.swing.JTextField txtGroomMinLen
```
txtLenThreshold
```
javax.swing.JTextField txtLenThreshold
```
txtOffsetX
```
javax.swing.JTextField txtOffsetX
```
txtOffsetY
```
javax.swing.JTextField txtOffsetY
```

Class mgui.morph.sections.InterfaceRadialRep2 extends InterfacePanel implements Serializable

Serialized Fields

chkFixedRadius
```
javax.swing.JCheckBox chkFixedRadius
```
chkGenCurrentSet
```
javax.swing.JCheckBox chkGenCurrentSet
```
chkGenSelSet
```
javax.swing.JCheckBox chkGenSelSet
```
chkGroomMaxLen
```
javax.swing.JCheckBox chkGroomMaxLen
```
chkGroomMinLen
```
javax.swing.JCheckBox chkGroomMinLen
```
chkMaxRadius
```
javax.swing.JCheckBox chkMaxRadius
```
chkOverwrite
```
javax.swing.JCheckBox chkOverwrite
```
chkUseCenterPt
```
javax.swing.JCheckBox chkUseCenterPt
```
chkUseControls
```
javax.swing.JCheckBox chkUseControls
```
chkUseFixedPt
```
javax.swing.JCheckBox chkUseFixedPt
```
chkUseOffset
```
javax.swing.JCheckBox chkUseOffset
```
cmbDisplayStle
```
javax.swing.JComboBox cmbDisplayStle
```
cmbSectionSet
```
javax.swing.JComboBox cmbSectionSet
```
CMD_ASSIGN_CORNERS
```
java.lang.String CMD_ASSIGN_CORNERS
```
CMD_GEN_CORNERS
```
java.lang.String CMD_GEN_CORNERS
```
CMD_GEN_MULTI
```
java.lang.String CMD_GEN_MULTI
```
CMD_GEN_SEL
```
java.lang.String CMD_GEN_SEL
```
CMD_GROOM_POLY
```
java.lang.String CMD_GROOM_POLY
```
cmdAssignCornerPts
```
javax.swing.JButton cmdAssignCornerPts
```
cmdGenCornerPts
```
javax.swing.JButton cmdGenCornerPts
```
cmdGenMulti
```
javax.swing.JButton cmdGenMulti
```
cmdGenSel
```
javax.swing.JButton cmdGenSel
```
cmdGroomPolys
```
javax.swing.JButton cmdGroomPolys
```
currentRep
```
RadialRep2DInt currentRep
```
currentSet
```
SectionSet3DInt currentSet
```
displayPanel
```
InterfaceDisplayPanel displayPanel
```
lblAngleThreshold
```
javax.swing.JLabel lblAngleThreshold
```
lblCenterHeader
```
javax.swing.JLabel lblCenterHeader
```
lblCircleHeader
```
CategoryTitle lblCircleHeader
```
lblControlHeader
```
CategoryTitle lblControlHeader
```
lblCornerPts
```
javax.swing.JLabel lblCornerPts
```
lblCurrentSet
```
javax.swing.JLabel lblCurrentSet
```
lblDisplayStle
```
javax.swing.JLabel lblDisplayStle
```
lblExecute
```
CategoryTitle lblExecute
```
lblFixedRadius
```
javax.swing.JLabel lblFixedRadius
```
lblGenCurrentSet
```
javax.swing.JLabel lblGenCurrentSet
```
lblGenHeader
```
CategoryTitle lblGenHeader
```
lblGenMultiple
```
javax.swing.JLabel lblGenMultiple
```
lblGenSelSet
```
javax.swing.JLabel lblGenSelSet
```
lblGroomHeader
```
CategoryTitle lblGroomHeader
```
lblGroomMinAngle
```
javax.swing.JLabel lblGroomMinAngle
```
lblLenThreshold
```
javax.swing.JLabel lblLenThreshold
```
lblMaxRadius
```
javax.swing.JLabel lblMaxRadius
```
lblRadiusHeader
```
javax.swing.JLabel lblRadiusHeader
```
lblTitle
```
CategoryTitle lblTitle
```
lblUseCenterPt
```
javax.swing.JLabel lblUseCenterPt
```
lblUseFixedPt
```
javax.swing.JLabel lblUseFixedPt
```
lblUseFixedPt2
```
javax.swing.JLabel lblUseFixedPt2
```
lblUseOffset
```
javax.swing.JLabel lblUseOffset
```
lblUseOffset2
```
javax.swing.JLabel lblUseOffset2
```
repAttr
```
AttributeList repAttr
```
shapeSet
```
ShapeSet3DInt shapeSet
```

txtAngleThreshold

javax.swing.JTextField txtAngleThreshold

txtFixedPtX
```
javax.swing.JTextField txtFixedPtX
```
txtFixedPtY
```
javax.swing.JTextField txtFixedPtY
```
txtFixedRadius
```
javax.swing.JTextField txtFixedRadius
```
txtGroomMaxLen
```
javax.swing.JTextField txtGroomMaxLen
```
txtGroomMinAngle
```
javax.swing.JTextField txtGroomMinAngle
```
txtGroomMinLen
```
javax.swing.JTextField txtGroomMinLen
```
txtLenThreshold
```
javax.swing.JTextField txtLenThreshold
```
txtOffsetX
```
javax.swing.JTextField txtOffsetX
```
txtOffsetY
```
javax.swing.JTextField txtOffsetY
```

Package mgui.neuro.exceptions
- Class mgui.neuro.exceptions.NeuroException extends NetworkException implements Serializable
- Class mgui.neuro.exceptions.NeuroNetException extends NetworkException implements Serializable
- Class mgui.neuro.exceptions.ODEException extends DynamicModelException implements Serializable
Package mgui.neuro.graphs
- Class mgui.neuro.graphs.CorticalNetworkGraph extends AbstractNetworkGraph implements Serializable
  - Serialized Fields
    
    network
    
    CorticalNetwork network
- Class mgui.neuro.graphs.NeuralNetGraph extends InterfaceAbstractGraph implements Serializable
  - Serialized Fields
    
    network
    
    AbstractNeuralNet network
Package mgui.neuro.imaging.camino
- Class mgui.neuro.imaging.camino.CaminoException extends java.lang.Exception implements Serializable
- Class mgui.neuro.imaging.camino.CaminoProject extends java.lang.Object implements Serializable
  - Serialized Fields
    
    name
    
    java.lang.String name
    
    pipelines
    
    java.util.ArrayList<InterfacePipeline> pipelines
    
    root_directory
    
    java.io.File root_directory
    
    subdirs
    
    java.util.ArrayList<java.lang.String> subdirs
    
    subject_prefix
    
    java.lang.String subject_prefix
    
    subjects
    
    java.util.ArrayList<java.lang.String> subjects
- Class mgui.neuro.imaging.camino.CaminoTaskTreeNode extends TaskTreeNode implements Serializable
  - Serialized Fields
    
    is_destroyed
    
    boolean is_destroyed
    
    listeners
    
    java.util.Vector<TaskTreeNodeListener> listeners
    
    model
    
    javax.swing.tree.DefaultTreeModel model
    
    tree
    
    javax.swing.JTree tree
Package mgui.pipelines
- Class mgui.pipelines.DynamicPipelineEvent extends java.util.EventObject implements Serializable
- Class mgui.pipelines.InterfacePipeline extends PipelineTask implements Serializable
  - Serialized Fields
    
    assigned_project
    
    InterfaceProject assigned_project
    
    dynamic_listeners
    
    java.util.ArrayList<DynamicPipelineListener> dynamic_listeners
    
    failed_process
    
    PipelineTask failed_process
    
    instance
    
    java.lang.String instance
    
    root_pipeline
    
    InterfacePipeline root_pipeline
    
    state
    
    PipelineState state
    
    static_listeners
    
    java.util.ArrayList<StaticPipelineListener> static_listeners
    
    tasks
    
    java.util.LinkedList<PipelineTask> tasks
    
    terminate_on_failure
    
    boolean terminate_on_failure
- Class mgui.pipelines.JavaProcess extends PipelineProcess implements Serializable
  - Serialized Fields
    
    current_system_processes
    
    java.util.HashMap<java.lang.Long,CommandInstance> current_system_processes
    
    is_interrupted
    
    boolean is_interrupted
    
    main_class
    
    java.lang.String main_class
- Class mgui.pipelines.NativeProcess extends PipelineProcess implements Serializable
  - Serialized Fields
    
    command
    
    java.lang.String command
    
    current_system_processes
    
    java.util.HashMap<java.lang.Long,java.lang.Process> current_system_processes
    
    path
    
    java.lang.String path
    
    set_operator
    
    java.lang.String set_operator
- Class mgui.pipelines.PipelineException extends java.lang.Exception implements Serializable
- Class mgui.pipelines.PipelineFork extends PipelineTask implements Serializable
  - Serialized Fields
    
    launch_parallel
    
    boolean launch_parallel
    
    output_pipeline
    
    InterfacePipeline output_pipeline
    
    pipeline
    
    InterfacePipeline pipeline
    
    pipelines
    
    java.util.LinkedList<InterfacePipeline> pipelines
- Class mgui.pipelines.PipelineProcess extends java.lang.Object implements Serializable
  - Serialized Fields
    
    help_param
    
    java.lang.String help_param
    
    input_parameter
    
    java.lang.String input_parameter
    
    library
    
    PipelineProcessLibrary library
    
    logger
    
    java.lang.String logger
    
    name
    
    java.lang.String name
    
    output_parameter
    
    java.lang.String output_parameter
    
    parameters
    
    java.util.ArrayList<TaskParameter> parameters
- Class mgui.pipelines.PipelineProcessInstance extends PipelineTask implements Serializable
  - Serialized Fields
    
    has_input
    
    boolean has_input
    
    input_file
    
    java.lang.String input_file
    
    instance
    
    int instance
    
    logger
    
    java.lang.String logger
    
    output_file
    
    java.lang.String output_file
    
    parameters
    
    java.util.HashMap<java.lang.String,TaskParameterInstance> parameters
    
    pipeline
    
    InterfacePipeline pipeline
    
    prepend_instance_input
    
    boolean prepend_instance_input
    
    prepend_instance_output
    
    boolean prepend_instance_output
    
    process
    
    PipelineProcess process
    
    uid
    
    long uid
- Class mgui.pipelines.PipelineTask extends AbstractInterfaceObject implements Serializable
  - Serialized Fields
    
    attributes
    
    AttributeList attributes
    
    current
    
    long current
    
    listeners
    
    java.util.ArrayList<PipelineTaskListener> listeners
    
    start
    
    long start
    
    status
    
    PipelineTask.Status status
- Class mgui.pipelines.PipelineTaskEvent extends java.util.EventObject implements Serializable
- Class mgui.pipelines.StaticPipelineEvent extends java.util.EventObject implements Serializable
  - Serialized Fields
    
    previous_value
    
    java.lang.Object previous_value
    
    task_index
    
    int task_index
    
    type
    
    StaticPipelineEvent.EventType type
- Class mgui.pipelines.TaskParameter extends java.lang.Object implements Serializable
  - Serialized Fields
    
    default_value
    
    java.lang.String default_value
    
    has_value
    
    boolean has_value
    
    name
    
    java.lang.String name
    
    optional
    
    boolean optional
    
    use_name
    
    boolean use_name
- Class mgui.pipelines.TaskParameterInstance extends java.lang.Object implements Serializable
  - Serialized Fields
    
    apply
    
    boolean apply
    
    name
    
    java.lang.String name
    
    parameter
    
    TaskParameter parameter
    
    value
    
    java.lang.String value
Package mgui.util
- Class mgui.util.JMultiLineToolTip extends javax.swing.JToolTip implements Serializable
  - Serialized Fields
    
    columns
    
    int columns
    
    component
    
    javax.swing.JComponent component
    
    fixedwidth
    
    int fixedwidth
    
    tipText
    
    java.lang.String tipText
- Class mgui.util.UnitConversionException extends java.lang.Exception implements Serializable

Serialized Form

Package au.edu.unsw.cse

Class au.edu.unsw.cse.AnimationWidget extends java.awt.Panel implements Serializable

Serialized Fields

auto

delay

engine

first

frameNo

last

lastFrame

next

prev

scroll

start

stop

text

viewer

Class au.edu.unsw.cse.AnimationWidgetVRML extends AnimationWidget implements Serializable

Class au.edu.unsw.cse.Applet3d extends java.applet.Applet implements Serializable

Serialized Fields

modelChoice

parameters

reset

transform

transformValues

viewer

windowValues

Class au.edu.unsw.cse.AppletDepth extends Applet3d implements Serializable

Class au.edu.unsw.cse.AppletHull extends Applet3d implements Serializable

Serialized Fields

axes

dataChoice

dataChoice2d

dataChoice3d

dataSize

dimensionChoice

mainPanel

modelChoice

moreButton

moreMessage

points

points3d

Class au.edu.unsw.cse.AppletPatch extends Applet3d implements Serializable

Class au.edu.unsw.cse.ColorControl extends java.awt.Checkbox implements Serializable

Serialized Fields

c

i

id

parent

tip

Class au.edu.unsw.cse.Paint3d extends java.awt.Canvas implements Serializable

Serialized Fields

g

model

offscreen

viewer

Class au.edu.unsw.cse.Viewer extends java.awt.Panel implements Serializable

Serialized Fields

animationWidget

colcontrols

engine

extras

hash

home

lastsect

lastsecx

lastsecy

lastt

lastx

lasty

lessButton

locked

model

moreButton

noColors

noPanelsDisplayed

painter

panelPanel

parent