Uses of Class
mgui.interfaces.InterfaceOptions

Packages that use InterfaceOptions

Package	Description
mgui.geometry.neuro.mesh
mgui.interfaces	This package contains all main/abstract interface objects (object which provides user interations) for ModelGUI.
mgui.interfaces.datasources	This package provides interface objects which allow the user to interface with the core data source classes.
mgui.interfaces.graphics.video	Provides classes to generate videos from graphics windows.
mgui.interfaces.io	This package contains all classes which perform input/output functions.
mgui.interfaces.math	Provides an abstract interface allowing arithmetic functions to be applied to object data (e.g., vertex data for shapes).
mgui.interfaces.models	Base classes for specifying dynamic models.
mgui.interfaces.neuro
mgui.interfaces.neuro.imaging.camino
mgui.interfaces.pipelines	This package provides interfaces for user interaction with pipelines.
mgui.interfaces.pipelines.libraries
mgui.interfaces.plots	Provides 2D and 3D plotting functionality.
mgui.interfaces.plots.sgt	Plots using the Scientific Graphics Toolkit (SGT) library.
mgui.interfaces.projects	Provides an interface for projects, which specify file/URL organization and I/O operations
mgui.interfaces.projects.util	Utility classes operating on projects.
mgui.interfaces.shapes.datasources
mgui.interfaces.shapes.mesh
mgui.interfaces.shapes.volume
mgui.interfaces.tools.dialogs
mgui.interfaces.tools.shapes
mgui.io	This package contains all classes which perform input/output functions.
mgui.io.domestic	Input/output operations for "domestic" (mgui-specific) data formats.
mgui.io.domestic.datasources
mgui.io.domestic.graphs
mgui.io.domestic.maps
mgui.io.domestic.network
mgui.io.domestic.pipelines
mgui.io.domestic.printing
mgui.io.domestic.shapes
mgui.io.domestic.variables
mgui.io.domestic.videos
mgui.io.domestic.views
mgui.io.foreign.caret
mgui.io.foreign.freesurfer
mgui.io.foreign.minc
mgui.io.foreign.pajek
mgui.io.foreign.vol
mgui.io.standard.gifti
mgui.io.standard.xml
mgui.io.standard.xml.x3d

Uses of InterfaceOptions in mgui.geometry.neuro.mesh

Subclasses of InterfaceOptions in mgui.geometry.neuro.mesh

Modifier and Type	Class	Description
class	ScalpAndSkullModelOptions	Parameters for skull and scalp surface approximation.

Uses of InterfaceOptions in mgui.interfaces

Fields in mgui.interfaces declared as InterfaceOptions

Modifier and Type	Field	Description
InterfaceOptions	InterfaceOptionsDialogBox.options

Methods in mgui.interfaces that return InterfaceOptions

Modifier and Type	Method	Description
InterfaceOptions	InterfaceOptionsDialogBox.getOptions()

Methods in mgui.interfaces with parameters of type InterfaceOptions

Modifier and Type	Method	Description
boolean	InterfaceDialogUpdater.setParameters(InterfaceOptions p, int code)
boolean	InterfaceDialogBox.updateDialog(InterfaceOptions p)

Constructors in mgui.interfaces with parameters of type InterfaceOptions

Constructor	Description
InterfaceOptionsDialogBox(javax.swing.JFrame aFrame, InterfaceOptions options)
InterfaceOptionsTabbedDialogBox(javax.swing.JFrame aFrame, InterfaceOptions options)

Uses of InterfaceOptions in mgui.interfaces.datasources

Subclasses of InterfaceOptions in mgui.interfaces.datasources

Modifier and Type	Class	Description
class	DataFieldOptions	Parameters defining a data field.
class	DataQueryOptions	Options for a data query
class	DataSourceDriverOptions	Options which specify a JDBC data source driver.
class	DataSourceOptions
class	DataTableOptions	Options for a new data table.

Uses of InterfaceOptions in mgui.interfaces.graphics.video

Subclasses of InterfaceOptions in mgui.interfaces.graphics.video

Modifier and Type	Class	Description
class	VideoTaskOptions

Uses of InterfaceOptions in mgui.interfaces.io

Subclasses of InterfaceOptions in mgui.interfaces.io

Modifier and Type	Class	Description
class	VolumeFileWriteOptions

Methods in mgui.interfaces.io with parameters of type InterfaceOptions

Modifier and Type	Method	Description
boolean	InterfaceFilePanel.setParameters(InterfaceOptions p, int code)
boolean	VolumeFileWriteDialog.updateDialog(InterfaceOptions p)	Deprecated.

Uses of InterfaceOptions in mgui.interfaces.math

Subclasses of InterfaceOptions in mgui.interfaces.math

Modifier and Type	Class	Description
class	MathExpressionOptions	Options for a math expression evaluation.

Methods in mgui.interfaces.math with parameters of type InterfaceOptions

Modifier and Type	Method	Description
boolean	MathExpressionDialogBox.updateDialog(InterfaceOptions opts)

Uses of InterfaceOptions in mgui.interfaces.models

Methods in mgui.interfaces.models with parameters of type InterfaceOptions

Modifier and Type	Method	Description
boolean	InterfaceDynamicModelPanel.setParameters(InterfaceOptions p, int code)

Uses of InterfaceOptions in mgui.interfaces.neuro

Subclasses of InterfaceOptions in mgui.interfaces.neuro

Modifier and Type	Class	Description
class	CorticalThicknessDataTableOptions
class	CorticalThicknessOptions

Methods in mgui.interfaces.neuro with parameters of type InterfaceOptions

Modifier and Type	Method	Description
boolean	CorticalThicknessDataTableDialogBox.updateDialog(InterfaceOptions opts)
boolean	CorticalThicknessDialogBox.updateDialog(InterfaceOptions opts)

Uses of InterfaceOptions in mgui.interfaces.neuro.imaging.camino

Subclasses of InterfaceOptions in mgui.interfaces.neuro.imaging.camino

Modifier and Type	Class	Description
class	CaminoProcessOptions
class	CaminoProjectOptions
class	CaminoTaskOptions

Constructors in mgui.interfaces.neuro.imaging.camino with parameters of type InterfaceOptions

Constructor	Description
CaminoProcessDialogBox(InterfaceOptions options)
CaminoProjectDialogBox(javax.swing.JFrame aFrame, InterfaceOptions options)
CaminoTaskDialogBox(javax.swing.JFrame aFrame, InterfaceOptions options)

Uses of InterfaceOptions in mgui.interfaces.pipelines

Subclasses of InterfaceOptions in mgui.interfaces.pipelines

Modifier and Type	Class	Description
class	PipelineProcessInstanceOptions	Options for a pipeline process instance.
class	PipelineProcessOptions	Options for a PipelineProcess.

Constructors in mgui.interfaces.pipelines with parameters of type InterfaceOptions

Constructor	Description
PipelineProcessDialogBox(InterfaceOptions options)

Uses of InterfaceOptions in mgui.interfaces.pipelines.libraries

Subclasses of InterfaceOptions in mgui.interfaces.pipelines.libraries

Modifier and Type	Class	Description
class	PipelineProcessLibraryOptions	Options for a PipelineProcessLibrary

Uses of InterfaceOptions in mgui.interfaces.plots

Subclasses of InterfaceOptions in mgui.interfaces.plots

Modifier and Type	Class	Description
class	InterfacePlotOptions<T extends InterfacePlot<?>>	Options for a plot object.

Uses of InterfaceOptions in mgui.interfaces.plots.sgt

Subclasses of InterfaceOptions in mgui.interfaces.plots.sgt

Modifier and Type	Class	Description
class	SgtPlotLayoutOptions	Options defining an SGT plot layout

Uses of InterfaceOptions in mgui.interfaces.projects

Subclasses of InterfaceOptions in mgui.interfaces.projects

Modifier and Type	Class	Description
class	InterfaceProjectOptions
class	ProjectDirectoryOptions	Options for a ProjectDirectory.

Constructors in mgui.interfaces.projects with parameters of type InterfaceOptions

Constructor	Description
InterfaceProjectDialogBox(javax.swing.JFrame aFrame, InterfaceOptions options)

Uses of InterfaceOptions in mgui.interfaces.projects.util

Subclasses of InterfaceOptions in mgui.interfaces.projects.util

Modifier and Type	Class	Description
class	ProjectOptions	Options for a project.

Constructors in mgui.interfaces.projects.util with parameters of type InterfaceOptions

Constructor	Description
ConsolidateDirectoriesDialogBox(javax.swing.JFrame frame, InterfaceOptions options)

Uses of InterfaceOptions in mgui.interfaces.shapes.datasources

Subclasses of InterfaceOptions in mgui.interfaces.shapes.datasources

Modifier and Type	Class	Description
class	DataSourceLinkOptions	Options for specifying a vertex data column link to a data source.

Constructors in mgui.interfaces.shapes.datasources with parameters of type InterfaceOptions

Constructor	Description
DataSourceLinkDialogBox(javax.swing.JFrame frame, InterfaceOptions options)

Uses of InterfaceOptions in mgui.interfaces.shapes.mesh

Subclasses of InterfaceOptions in mgui.interfaces.shapes.mesh

Modifier and Type	Class	Description
class	MeshDataMaskOptions
class	MeshDataOptions
class	MeshDataThresholdOptions
class	MeshPlaneMaskOptions
class	MeshSubmeshOptions

Uses of InterfaceOptions in mgui.interfaces.shapes.volume

Subclasses of InterfaceOptions in mgui.interfaces.shapes.volume

Modifier and Type	Class	Description
class	VolumeMaskOptions
class	VolumeMaskOptions_old	Class to specify parameters for volume masking.

Methods in mgui.interfaces.shapes.volume with parameters of type InterfaceOptions

Modifier and Type	Method	Description
protected boolean	InterfaceVolumePanel.setParameters(InterfaceOptions p)

Constructors in mgui.interfaces.shapes.volume with parameters of type InterfaceOptions

Constructor	Description
VolumeMaskDialog(javax.swing.JFrame aFrame, InterfaceOptions options)

Uses of InterfaceOptions in mgui.interfaces.tools.dialogs

Fields in mgui.interfaces.tools.dialogs declared as InterfaceOptions

Modifier and Type	Field	Description
protected InterfaceOptions	DialogToolDialogBox.options

Methods in mgui.interfaces.tools.dialogs that return InterfaceOptions

Modifier and Type	Method	Description
InterfaceOptions	DialogToolDialogBox.getOptions()

Methods in mgui.interfaces.tools.dialogs with parameters of type InterfaceOptions

Modifier and Type	Method	Description
protected boolean	DialogTool.doTask(InterfaceOptions options)	Call this to run the task as a worker task.
protected abstract boolean	DialogTool.doTaskBlocking(InterfaceOptions options, InterfaceProgressBar progress_bar)	Runs this tool's task and blocks until it is complete.

Constructors in mgui.interfaces.tools.dialogs with parameters of type InterfaceOptions

Constructor	Description
DialogToolDialogBox(javax.swing.JFrame frame, InterfaceOptions options)

Uses of InterfaceOptions in mgui.interfaces.tools.shapes

Subclasses of InterfaceOptions in mgui.interfaces.tools.shapes

Modifier and Type	Class	Description
class	ToolCreateMeshFromPolylinesOptions
class	ToolCutMeshWithPlaneOptions
class	ToolGetConvexHull2DOptions
class	ToolGetMeshIntersectionPolylinesOptions

Methods in mgui.interfaces.tools.shapes with parameters of type InterfaceOptions

Modifier and Type	Method	Description
protected boolean	ToolCreateMeshFromPolylines.doTaskBlocking(InterfaceOptions options, InterfaceProgressBar progress_bar)
protected boolean	ToolCutMeshWithPlane.doTaskBlocking(InterfaceOptions options, InterfaceProgressBar progress_bar)
protected boolean	ToolGetConvexHull2D.doTaskBlocking(InterfaceOptions options, InterfaceProgressBar progress_bar)
protected boolean	ToolGetMeshIntersectionPolylines.doTaskBlocking(InterfaceOptions options, InterfaceProgressBar progress_bar)

Constructors in mgui.interfaces.tools.shapes with parameters of type InterfaceOptions

Constructor	Description
ToolCreateMeshFromPolylinesDialog(javax.swing.JFrame frame, InterfaceOptions options)
ToolCutMeshWithPlaneDialog(javax.swing.JFrame frame, InterfaceOptions options)
ToolGetConvexHull2DDialog(javax.swing.JFrame frame, InterfaceOptions options)
ToolGetMeshIntersectionPolylinesDialog(javax.swing.JFrame frame, InterfaceOptions options)

Uses of InterfaceOptions in mgui.io

Subclasses of InterfaceOptions in mgui.io

Modifier and Type	Class	Description
class	DefaultIOOptions	Implements a default IO options object, specifying files and a generic file chooser.
class	InterfaceIOOptions	Extends InterfaceOptions specifically for I/O methods.

Uses of InterfaceOptions in mgui.io.domestic

Subclasses of InterfaceOptions in mgui.io.domestic

Modifier and Type	Class	Description
class	WorkspaceOutputOptions	Specifies options for writing a workspace (i.e., an instance of InterfaceWorkspace) to XML.

Uses of InterfaceOptions in mgui.io.domestic.datasources

Subclasses of InterfaceOptions in mgui.io.domestic.datasources

Modifier and Type	Class	Description
class	DataSourceOutOptions	Specifies options for writing a Data Source to file.
class	ExportDataTableExcelOptions	Options for exporting data from a DataSourceItem to a Microsoft Excel format file.
class	ExportDataTableOptions	Options for exporting data from a data source to an external file format.
class	ExportDataTableTextOptions	Options for exporting data from a data source to a delimited text file.
class	ImportDataTableOptions	Specifies options for importing data to a data source table.
class	ImportDataTableTextOptions	Specifies options for importing data from a text file to a data source table.

Uses of InterfaceOptions in mgui.io.domestic.graphs

Subclasses of InterfaceOptions in mgui.io.domestic.graphs

Modifier and Type	Class	Description
class	GraphInputOptions	General options for loading a graph
class	GraphOutputOptions	General options for writing a graph to file.

Uses of InterfaceOptions in mgui.io.domestic.maps

Subclasses of InterfaceOptions in mgui.io.domestic.maps

Modifier and Type	Class	Description
class	DiscreteColourMapInOptions	Options for inputting a DiscreteColourMap.
class	DiscreteColourMapOutOptions	Options for outputting a DiscreteColourMap.
class	NameMapInOptions
class	NameMapOutOptions	Specifies options for writing a name map (or multiple name maps) to file.

Uses of InterfaceOptions in mgui.io.domestic.network

Subclasses of InterfaceOptions in mgui.io.domestic.network

Modifier and Type	Class	Description
class	CorticalNetworkMatrixInOptions	Inputs a matrix as a weighted cortical network.

Uses of InterfaceOptions in mgui.io.domestic.pipelines

Subclasses of InterfaceOptions in mgui.io.domestic.pipelines

Modifier and Type	Class	Description
class	PipelineInputOptions	Options for loading a pipeline or multiple pipelines.
class	PipelineOutputOptions

Uses of InterfaceOptions in mgui.io.domestic.printing

Subclasses of InterfaceOptions in mgui.io.domestic.printing

Modifier and Type	Class	Description
class	StlOutputOptions	Options defining an output operation to STL format.

Uses of InterfaceOptions in mgui.io.domestic.shapes

Subclasses of InterfaceOptions in mgui.io.domestic.shapes

Modifier and Type	Class	Description
class	Graph3DOutputOptions	Output options for a Graph3DWriter
class	PointSet2DInputOptions	Options for loading a PointSet2DInt object.
class	PointSet3DDataInputOptions
class	PointSet3DInputOptions	Options for loading a PointSet3DInt object.
class	PolygonSet3DInputOptions	Options for loading a PolygonSet3DInt object.
class	ShapeDataInputOptions	Options for loading vertex-wise data into a shape.
class	ShapeInputOptions	Options for loading an InterfaceShape object.
class	ShapeModel3DInputOptions	Options for loading a ShapeModel3D object.
class	ShapeModel3DOutputOptions	Specifies options for writing a ShapeModel3D object to XML.
class	ShapeOutputOptions	Output options for an InterfaceShapeWriter.
class	SurfaceDataInputOptions
class	SurfaceDataOutputOptions	Options for outputting surface data to a text file (single column)
class	SurfaceInputOptions	Options for inputting a Mesh3DInt object.
class	SurfaceOutputOptions	Standard options for writing a surface to file.
class	VectorSet3DInputOptions	Options for loading a VectorSet3DInt object.
class	VolumeInputOptions	Options specifying a Volume3DInt object.
class	VolumeOutputOptions	Specifies options for outputting a Volume3DInt to persistent storage.

Methods in mgui.io.domestic.shapes with parameters of type InterfaceOptions

Modifier and Type	Method	Description
boolean	VolumeInputDialogBox.updateDialog(InterfaceOptions opt)

Uses of InterfaceOptions in mgui.io.domestic.variables

Subclasses of InterfaceOptions in mgui.io.domestic.variables

Modifier and Type	Class	Description
class	MatrixInOptions	Options for loading a matrix from file.
class	MatrixOutOptions
class	StringVectorInOptions	Options for reading an array of String objects into a StringVectorInt instance.

Uses of InterfaceOptions in mgui.io.domestic.videos

Subclasses of InterfaceOptions in mgui.io.domestic.videos

Modifier and Type	Class	Description
class	ImageStackVideoOptions	Options for a video stack output operation; i.e., vis ImageStackVideoWriter.
class	VideoInputOptions
class	VideoOutputOptions

Uses of InterfaceOptions in mgui.io.domestic.views

Subclasses of InterfaceOptions in mgui.io.domestic.views

Modifier and Type	Class	Description
class	View3DInputOptions	Options for loading View3D objects.
class	View3DOutputOptions	Options for writing a set of View3D objects to file.

Uses of InterfaceOptions in mgui.io.foreign.caret

Subclasses of InterfaceOptions in mgui.io.foreign.caret

Modifier and Type	Class	Description
class	CaretAreaColourInOptions
class	CaretAreaColourOutputOptions	Options for outputting a DiscreteColourMap as a Caret areacolor file.
class	CaretMetricInOptions
class	CaretMetricOptions	Options for a Caret metric file.
class	CaretPaintInOptions
class	CaretPaintOptions	Deprecated. use CaretPaintInOptions or CaretPaintOutOptions
class	CaretPaintOutOptions
class	CaretSurfaceInOptions	Options specifying how to read a Caret surface
class	CaretSurfaceOutOptions

Methods in mgui.io.foreign.caret with parameters of type InterfaceOptions

Modifier and Type	Method	Description
boolean	CaretSurfaceOutDialogBox.updateDialog(InterfaceOptions options)

Uses of InterfaceOptions in mgui.io.foreign.freesurfer

Subclasses of InterfaceOptions in mgui.io.foreign.freesurfer

Modifier and Type	Class	Description
class	FreesurferSurfaceOutputOptions	Options for a FreesurferSurfaceWriter.
class	FreesurferVertexDataInOptions	Options for FreesurferVertexDataLoader.

Uses of InterfaceOptions in mgui.io.foreign.minc

Subclasses of InterfaceOptions in mgui.io.foreign.minc

Modifier and Type	Class	Description
class	MincSurfaceDataInOptions
class	MincSurfaceDataOutOptions

Uses of InterfaceOptions in mgui.io.foreign.pajek

Subclasses of InterfaceOptions in mgui.io.foreign.pajek

Modifier and Type	Class	Description
class	PajekGraphInputOptions	Options for Pajek graph input.

Uses of InterfaceOptions in mgui.io.foreign.vol

Subclasses of InterfaceOptions in mgui.io.foreign.vol

Modifier and Type	Class	Description
class	Volume4DInputOptions
class	VolumeInputOptions

Uses of InterfaceOptions in mgui.io.standard.gifti

Subclasses of InterfaceOptions in mgui.io.standard.gifti

Modifier and Type	Class	Description
class	GiftiInputOptions	Options specific for Gifti surfaces.
class	GiftiOutputOptions	Options for writing a surface to a Gifti format file.

Methods in mgui.io.standard.gifti with parameters of type InterfaceOptions

Modifier and Type	Method	Description
boolean	GiftiSurfaceOutDialogBox.updateDialog(InterfaceOptions options)

Uses of InterfaceOptions in mgui.io.standard.xml

Subclasses of InterfaceOptions in mgui.io.standard.xml

Modifier and Type	Class	Description
class	XMLOutputOptions	Specifies options for writing an XML object (i.e., an instance of XMLObject).

Uses of InterfaceOptions in mgui.io.standard.xml.x3d

Subclasses of InterfaceOptions in mgui.io.standard.xml.x3d

Modifier and Type	Class	Description
class	Vector3DInputOptions