Uses of Class
mgui.interfaces.shapes.InterfaceShape

Packages that use InterfaceShape

Package	Description
mgui.interfaces	This package contains all main/abstract interface objects (object which provides user interations) for ModelGUI.
mgui.interfaces.shapes	This package provides interfaces for user interaction with shapes and shape models.
mgui.interfaces.shapes.dynamic
mgui.interfaces.shapes.graphs
mgui.interfaces.shapes.neuro
mgui.interfaces.shapes.queries
mgui.interfaces.shapes.selection
mgui.interfaces.shapes.trees
mgui.interfaces.shapes.util
mgui.interfaces.trees	Provides object interaction via a JTree
mgui.io.domestic.shapes
mgui.io.domestic.shapes.xml
mgui.io.util	Utility classes for performing input/output operations.
mgui.morph.sections

Uses of InterfaceShape in mgui.interfaces

Methods in mgui.interfaces that return InterfaceShape

Modifier and Type	Method	Description
InterfaceShape	InterfaceWorkspace.getShapeForName(java.lang.String full_name)	Searches the workspace for a shape with the given full name (i.e., {model}.{sets}.{shape_name}), and returns it if found.

Uses of InterfaceShape in mgui.interfaces.shapes

Subclasses of InterfaceShape in mgui.interfaces.shapes

Modifier and Type	Class	Description
class	BoolPolygon2DInt
class	Box3DInt
class	Circle2DInt
class	Ellipse2DInt	Interface for a Ellipse2D shape.
class	Image2DInt	Displays an image inside a Rect2D shape.
class	Image3DInt	Draws a rectangular planar image in R3.
class	IntPolygon2DInt
class	Line2DInt
class	LPolygon2DInt	Light 2D polygon with no attributes (attributes are assignable)
class	LPolygon3DInt
class	Mesh2DInt	A 2D representation of a Mesh3DInt object.
class	Mesh3DInt	Interface for a Mesh3D shape.
class	Plane3DInt
class	Point2DInt
class	PointSet2DInt	Shape interface for a set of 2D vertices.
class	PointSet3DInt	Shape interface for a set of 3D points.
class	Polygon2DInt	Interface for a 2D polygon.
class	Polygon3DInt	Interface for a 3D polygon object.
class	PolygonSet3DInt	Interface for a set of 3D polygons.
class	Rect2DInt	Represents a 2D rectangle.
class	Rect3DInt
class	SectionSet2DInt	Provides a 2D representation of a 3D section set, where it intersects a particular plane.
class	SectionSet3DInt	Represents a set of parallel sections, based upon a reference plane (thisShape), and a spacing value.
class	Shape2DInt	Base class for all interfaces to 2D geometrical shapes.
class	Shape2DSelectionSet
class	Shape3DInt	Base class for all Shape3D interface objects.
class	ShapeSet2DInt	Represents a set of Shape2DInt objects.
class	ShapeSet3DInt	Represents a set of Shape3DInt objects.
class	TensorVolume3DInt
class	TestTextureInt
class	Text2DInt
class	Text2DIntMouseCoords
class	Vector2DInt
class	Vector3DInt
class	VectorSet3DInt
class	Volume2DInt	2D sectional representation of a Volume3DInt.
class	Volume3DInt	Class acting as interface to a volume shape, as defined by the Grid3D geometry class.
class	VolumeSet3DInt	A set of Volume3DInt objects which render as an overlay image.
class	X3DScene3DInt

Methods in mgui.interfaces.shapes that return InterfaceShape

Modifier and Type	Method	Description
InterfaceShape	InterfaceShapesPanel.getCurrentShapes()	Determines which shapes are selected and returns them.
InterfaceShape	ShapeStatsPanel.getCurrentShapes()	Determines which shapes are selected and returns them.
InterfaceShape	SectionSet3DInt.getLastAdded()
InterfaceShape	ShapeSet.getLastAdded()
InterfaceShape	ShapeSet2DInt.getLastAdded()
InterfaceShape	ShapeSet3DInt.getLastAdded()
InterfaceShape	SectionSet3DInt.getLastInserted()
InterfaceShape	ShapeSet.getLastInserted()
InterfaceShape	ShapeSet2DInt.getLastInserted()
InterfaceShape	ShapeSet3DInt.getLastInserted()
InterfaceShape	SectionSet3DInt.getLastModified()
InterfaceShape	ShapeSet.getLastModified()
InterfaceShape	ShapeSet2DInt.getLastModified()
InterfaceShape	ShapeSet3DInt.getLastModified()
InterfaceShape	SectionSet3DInt.getLastMoved()
InterfaceShape	ShapeSet.getLastMoved()
InterfaceShape	ShapeSet2DInt.getLastMoved()
InterfaceShape	ShapeSet3DInt.getLastMoved()
InterfaceShape	SectionSet3DInt.getLastRemoved()
InterfaceShape	ShapeSet.getLastRemoved()
InterfaceShape	ShapeSet2DInt.getLastRemoved()
InterfaceShape	ShapeSet3DInt.getLastRemoved()

Methods in mgui.interfaces.shapes that return types with arguments of type InterfaceShape

Modifier and Type	Method	Description
java.util.ArrayList<InterfaceShape>	SectionSet3DInt.getMembers()	Returns a copy of this set's member list.
java.util.ArrayList<InterfaceShape>	ShapeSet.getMembers()
java.util.ArrayList<InterfaceShape>	ShapeSet2DInt.getMembers()	Returns a copy of this set's member list.
java.util.ArrayList<InterfaceShape>	ShapeSet3DInt.getMembers()	Returns a copy of this set's member list.
java.util.ArrayList<InterfaceShape>	ShapeSet3DInt.getMembers(boolean recursive)	Returns a copy of this set's member list.
java.util.Set<InterfaceShape>	SectionSet3DInt.getShapeSet()
java.util.Set<InterfaceShape>	ShapeSet.getShapeSet()
java.util.Set<InterfaceShape>	ShapeSet2DInt.getShapeSet()
java.util.Set<InterfaceShape>	ShapeSet3DInt.getShapeSet()

Methods in mgui.interfaces.shapes with parameters of type InterfaceShape

Modifier and Type	Method	Description
boolean	SectionSet3DInt.addShape(InterfaceShape shape)
boolean	ShapeSet.addShape(InterfaceShape shape)	Adds a shape to this set
boolean	ShapeSet2DInt.addShape(InterfaceShape shape)
boolean	ShapeSet3DInt.addShape(InterfaceShape shape)	Adds shape to this set, updates it, and fires this set's listeners.
int	InterfaceShape.compareTo(InterfaceShape s)
boolean	InterfaceShape.copyAttributes(InterfaceShape source_shape)	Copies attributes to this shape.
boolean	Shape3DInt.copyAttributes(InterfaceShape source_shape)
int	SectionSet3DInt.getIndexOf(InterfaceShape section_set)	Returns the index of section_set in this set.
int	ShapeSet.getIndexOf(InterfaceShape shape)	Returns the index of shape in this set.
int	ShapeSet2DInt.getIndexOf(InterfaceShape shape)	Returns the index of shape in this set.
int	ShapeSet3DInt.getIndexOf(InterfaceShape shape)	Returns the index of shape in this set.
java.util.ArrayList<ShapeSelectionSet>	ShapeModel3D.getSelectionSets(InterfaceShape thisShape)
static javax.swing.JComboBox	InterfaceShapesPanel.VertexSelectionTableModel.getVariableCombo(InterfaceShape shape)
boolean	SectionSet3DInt.hasShape(InterfaceShape s)	Not implemented.
boolean	SectionSet3DInt.hasShape(InterfaceShape s, boolean recurse)	Not implemented.
boolean	ShapeSet.hasShape(InterfaceShape s)
boolean	ShapeSet.hasShape(InterfaceShape s, boolean recurse)
boolean	ShapeSet2DInt.hasShape(InterfaceShape s)
boolean	ShapeSet2DInt.hasShape(InterfaceShape s, boolean recurse)
boolean	ShapeSet3DInt.hasShape(InterfaceShape s)	Determines whether shape is in this set.
boolean	ShapeSet3DInt.hasShape(InterfaceShape shape, boolean recurse)	Determines whether shape is in this set.
boolean	ShapeSet3DInt.moveShapeAfter(InterfaceShape inserted_shape, InterfaceShape target_shape)
boolean	SectionSet3DInt.moveShapeBefore(InterfaceShape shape, InterfaceShape target)
boolean	ShapeSet.moveShapeBefore(InterfaceShape shape, InterfaceShape target)	Moves the order of shape to the spot before target.
boolean	ShapeSet2DInt.moveShapeBefore(InterfaceShape shape, InterfaceShape target)
boolean	ShapeSet3DInt.moveShapeBefore(InterfaceShape inserted_shape, InterfaceShape target_shape)
void	SectionSet3DInt.removeShape(InterfaceShape shape)
void	ShapeSet.removeShape(InterfaceShape shape)	Removes a shape from this set
void	ShapeSet2DInt.removeShape(InterfaceShape shape)
void	ShapeSet3DInt.removeShape(InterfaceShape shape)	Removes shape from this shape set and removes it as a parent set and a shape listener.
void	Shape3DSceneNode.setNode(InterfaceShape thisShape)
void	ShapeSceneNode.setNode(InterfaceShape thisShape)

Uses of InterfaceShape in mgui.interfaces.shapes.dynamic

Subclasses of InterfaceShape in mgui.interfaces.shapes.dynamic

Modifier and Type	Class	Description
class	Volume4DInt	Volume with 3 space and 1 time dimension.

Uses of InterfaceShape in mgui.interfaces.shapes.graphs

Subclasses of InterfaceShape in mgui.interfaces.shapes.graphs

Modifier and Type	Class	Description
class	Graph2DInt	Graph shape represented in R2.
class	Graph3DInt	Represents a graph as a 3D shape.

Uses of InterfaceShape in mgui.interfaces.shapes.neuro

Subclasses of InterfaceShape in mgui.interfaces.shapes.neuro

Modifier and Type	Class	Description
class	CorticalHemisphereSet3DInt
class	CorticalSurfaceSet3DInt	Representation of a set of cortical surfaces, including grey matter (GM) interfaces with white matter (WM) and cerebrospinal fluid (CSF).

Uses of InterfaceShape in mgui.interfaces.shapes.queries

Fields in mgui.interfaces.shapes.queries declared as InterfaceShape

Modifier and Type	Field	Description
InterfaceShape	InterfaceShapeQuery.last_shape
protected InterfaceShape	QueryShapeVertex.shape

Methods in mgui.interfaces.shapes.queries that return InterfaceShape

Modifier and Type	Method	Description
InterfaceShape	QueryShapeVertex.getShape()

Methods in mgui.interfaces.shapes.queries with parameters of type InterfaceShape

Modifier and Type	Method	Description
void	InterfaceShapeQuery.setFromShape(InterfaceShape shape)
void	ShapeSummaryQuery.setFromShape(InterfaceShape shape)

Constructors in mgui.interfaces.shapes.queries with parameters of type InterfaceShape

Constructor	Description
QueryShapeVertex(InterfaceShape shape, int index)

Uses of InterfaceShape in mgui.interfaces.shapes.selection

Fields in mgui.interfaces.shapes.selection declared as InterfaceShape

Modifier and Type	Field	Description
InterfaceShape	ShapeSelectionSet.shapeAdded

Fields in mgui.interfaces.shapes.selection with type parameters of type InterfaceShape

Modifier and Type	Field	Description
java.util.TreeSet<InterfaceShape>	ShapeSelectionSet.shapes

Methods in mgui.interfaces.shapes.selection that return InterfaceShape

Modifier and Type	Method	Description
InterfaceShape	ShapeSelectionSet.getLastAdded()	Not implemented.
InterfaceShape	ShapeSelectionSet.getLastInserted()	Not implemented.
InterfaceShape	ShapeSelectionSet.getLastModified()	Not implemented.
InterfaceShape	ShapeSelectionSet.getLastMoved()	Not implemented.
InterfaceShape	ShapeSelectionSet.getLastRemoved()	Not implemented.

Methods in mgui.interfaces.shapes.selection that return types with arguments of type InterfaceShape

Modifier and Type	Method	Description
java.util.Iterator<InterfaceShape>	ShapeSelectionSet.getIterator()
java.util.ArrayList<InterfaceShape>	ShapeSelectionSet.getMembers()	Returns a copy of this set's member list.
java.util.Set<InterfaceShape>	ShapeSelectionSet.getShapeSet()

Methods in mgui.interfaces.shapes.selection with parameters of type InterfaceShape

Modifier and Type	Method	Description
boolean	ShapeSelectionSet.addShape(InterfaceShape s)
boolean	ShapeSelectionSet.addShape(InterfaceShape s, boolean update)
int	ShapeSelectionSet.getIndexOf(InterfaceShape shape)	Returns the index of shape in this set.
boolean	ShapeSelectionSet.hasShape(InterfaceShape shape)	Returns true if shape is in this selection set.
boolean	ShapeSelectionSet.hasShape(InterfaceShape shape, boolean recurse)	Current returns the same as ShapeSelectionSet.hasShape(mgui.interfaces.shapes.InterfaceShape) TODO: implement to search member shape and selection sets
boolean	ShapeSelectionSet.moveShapeBefore(InterfaceShape shape, InterfaceShape target)
void	ShapeSelectionSet.removeShape(InterfaceShape s)

Method parameters in mgui.interfaces.shapes.selection with type arguments of type InterfaceShape

Modifier and Type	Method	Description
void	ShapeSelectionSet.addShapes(java.util.ArrayList<InterfaceShape> shapes)
void	ShapeSelectionSet.addShapes(java.util.TreeSet<InterfaceShape> shapes)

Uses of InterfaceShape in mgui.interfaces.shapes.trees

Methods in mgui.interfaces.shapes.trees that return InterfaceShape

Modifier and Type	Method	Description
InterfaceShape	ShapeTreeNode.getShape()

Methods in mgui.interfaces.shapes.trees with parameters of type InterfaceShape

Modifier and Type	Method	Description
ShapeTreeNode	ShapeModel3DTreeNode.getChildForShape(InterfaceShape shape)
ShapeTreeNode	ShapeTreeNode.getChildForShape(InterfaceShape shape)
boolean	Shape2DTreeNode.hasShapeNode(InterfaceShape shape)
boolean	Shape3DTreeNode.hasShapeNode(InterfaceShape shape)
boolean	ShapeModel3DTreeNode.hasShapeNode(InterfaceShape shape)
abstract boolean	ShapeTreeNode.hasShapeNode(InterfaceShape shape)
void	Shape2DTreeNode.removeShapeNode(InterfaceShape shape)
void	Shape3DTreeNode.removeShapeNode(InterfaceShape shape)
void	ShapeModel3DTreeNode.removeShapeNode(InterfaceShape shape)
abstract void	ShapeTreeNode.removeShapeNode(InterfaceShape shape)

Uses of InterfaceShape in mgui.interfaces.shapes.util

Methods in mgui.interfaces.shapes.util that return InterfaceShape

Modifier and Type	Method	Description
InterfaceShape	ShapeEvent.getShape()

Methods in mgui.interfaces.shapes.util with parameters of type InterfaceShape

Modifier and Type	Method	Description
static java.util.ArrayList<MguiNumber>	ShapeFunctions.getMaskNormalizedValues(InterfaceShape shape, java.lang.String source_column, java.lang.String normalize_column, java.lang.String mask_column)	Normalize values in source_column by the mean of values in normalize_column which lie in the mask mask_column.
static java.util.ArrayList<MguiNumber>	ShapeFunctions.getMaskNormalizedValues(InterfaceShape shape, java.lang.String source_column, java.lang.String normalize_column, java.lang.String mask_column, java.lang.String statistic)	Normalize values in source_column by the statistic of values in normalize_column which lie in the mask mask_column.
static java.util.ArrayList<java.lang.Integer>	ShapeFunctions.getNearestNeighbours(InterfaceShape source, InterfaceShape target)	Returns a list of vertex indices from source which are nearest neighbours of the corresponding vertices of target.
static java.util.ArrayList<MguiNumber>	ShapeFunctions.getNormalizedValues(InterfaceShape shape, java.lang.String source_column, double source_min, double source_max, double target_min, double target_max)	Normalize values in source_column to from the range [source_min, source_max] to the range [target_min, target_max]
boolean	ShapeEngine.normalizeColumn(InterfaceShape shape, ProgressUpdater progress)	Normalizes the values in a column.
boolean	ShapeEngine.normalizeColumnWithMask(InterfaceShape shape, ProgressUpdater progress)	Normalize values in source_column by the statistic of values in normalize_column which lie in the mask mask_column.
void	ShapeEvent.setShape(InterfaceShape shape)

Constructors in mgui.interfaces.shapes.util with parameters of type InterfaceShape

Constructor	Description
ShapeEvent(InterfaceShape thisShape, ShapeEvent.EventType type)
ShapeEvent(InterfaceShape thisShape, ShapeEvent.EventType type, boolean modifies_shape_set)

Uses of InterfaceShape in mgui.interfaces.trees

Methods in mgui.interfaces.trees that return InterfaceShape

Modifier and Type	Method	Description
protected InterfaceShape	InterfaceTreePanel.getParentShape(InterfaceTreeNode node)

Uses of InterfaceShape in mgui.io.domestic.shapes

Fields in mgui.io.domestic.shapes declared as InterfaceShape

Modifier and Type	Field	Description
InterfaceShape	ShapeDataInputOptions.shape
InterfaceShape	ShapeInputOptions.shape

Fields in mgui.io.domestic.shapes with type parameters of type InterfaceShape

Modifier and Type	Field	Description
java.util.HashMap<InterfaceShape,java.lang.Boolean>	ShapeModel3DOutputOptions.include_shape
java.util.HashMap<InterfaceShape,XMLOutputOptions>	ShapeModel3DOutputOptions.shape_xml_options
java.util.ArrayList<InterfaceShape>	ShapeOutputOptions.shapes

Methods in mgui.io.domestic.shapes that return InterfaceShape

Modifier and Type	Method	Description
InterfaceShape	ShapeDataInputOptions.getShape()
InterfaceShape	ShapeOutputOptions.getShape(int i)
abstract InterfaceShape	InterfaceShapeLoader.loadShape(ShapeInputOptions options, ProgressUpdater progress_bar)	Loads a shape with the given options.
InterfaceShape	Mesh3DLoader.loadShape(ShapeInputOptions options, ProgressUpdater progress_bar)
InterfaceShape	PointSet2DLoader.loadShape(ShapeInputOptions options, ProgressUpdater progress_bar)
InterfaceShape	ShapeXmlLoader.loadShape(ShapeInputOptions options, ProgressUpdater progress_bar)
InterfaceShape	SurfaceFileLoader.loadShape(ShapeInputOptions options, ProgressUpdater progress_bar)
InterfaceShape	VolumeFileLoader.loadShape(ShapeInputOptions options, ProgressUpdater progress_bar)
protected InterfaceShape	ShapeXmlLoader.loadShapeBlocking(ShapeInputOptions options, ProgressUpdater progress_bar)

Methods in mgui.io.domestic.shapes with parameters of type InterfaceShape

Modifier and Type	Method	Description
abstract boolean	InterfaceShapeWriter.writeShape(InterfaceShape shape, ProgressUpdater progress_bar)	Writes this shape to file using its domestic XML representation.
boolean	ShapeXmlWriter.writeShape(InterfaceShape shape, ProgressUpdater progress_bar)

Uses of InterfaceShape in mgui.io.domestic.shapes.xml

Fields in mgui.io.domestic.shapes.xml declared as InterfaceShape

Modifier and Type	Field	Description
protected InterfaceShape	InterfaceShapeXMLHandler.shape

Methods in mgui.io.domestic.shapes.xml that return InterfaceShape

Modifier and Type	Method	Description
InterfaceShape	InterfaceShapeXMLHandler.getShape()
static InterfaceShape	ShapeXMLFunctions.loadShape(java.lang.String loader, java.lang.String url, ShapeInputOptions options, ProgressUpdater progress_bar)	Attempts to load a shape with the given loader and url.

Constructors in mgui.io.domestic.shapes.xml with parameters of type InterfaceShape

Constructor	Description
InterfaceShapeXMLHandler(InterfaceShape shape)	Construct with a shape.

Uses of InterfaceShape in mgui.io.util

Methods in mgui.io.util with parameters of type InterfaceShape

Modifier and Type	Method	Description
static InterfaceIOType	IoFunctions.getDefaultIOType(InterfaceShape shape, int io_type)	Returns the first instance in InterfaceEnvironment of an InterfaceIOType compatible with shape.

Uses of InterfaceShape in mgui.morph.sections

Subclasses of InterfaceShape in mgui.morph.sections

Modifier and Type	Class	Description
class	MorphSections3DInt	Class representing a set of intermediate sections (subsections), such that each subsection holds an iterative morphing representation from some source shape to some target shape.
class	RadialRep2DInt