Uses of Interface
mgui.interfaces.xml.XMLObject

Packages that use XMLObject

Package	Description
mgui.datasources	This package contains the core classes for data source functionality.
mgui.geometry	Provides 2D and 3D geometry representations and utilities for all shapes used in ModelGUI.
mgui.graphs.networks	Classes representing network graphs.
mgui.image.util	Utility classes for operations on 2D and 3D images.
mgui.interfaces	This package contains all main/abstract interface objects (object which provides user interations) for ModelGUI.
mgui.interfaces.attributes	Provides a standard updatable attribute object which can fire events for all interface objects.
mgui.interfaces.attributes.video	Classes allowing video tasks to read/modify object attributes.
mgui.interfaces.console	Provides an interactive system console (currently view only).
mgui.interfaces.graphics	Provides graphical windows for user interaction with model objects.
mgui.interfaces.graphics.video	Provides classes to generate videos from graphics windows.
mgui.interfaces.graphs	Provides an interface for user interaction with graph objects.
mgui.interfaces.layouts
mgui.interfaces.maps	Provides a set a maps for use by ModelGUI objects.
mgui.interfaces.neuro.imaging.camino
mgui.interfaces.pipelines.libraries
mgui.interfaces.plots	Provides 2D and 3D plotting functionality.
mgui.interfaces.projects	Provides an interface for projects, which specify file/URL organization and I/O operations
mgui.interfaces.shapes	This package provides interfaces for user interaction with shapes and shape models.
mgui.interfaces.shapes.attributes
mgui.interfaces.shapes.dynamic
mgui.interfaces.shapes.graphs
mgui.interfaces.shapes.neuro
mgui.interfaces.shapes.selection
mgui.interfaces.shapes.video
mgui.interfaces.shapes.volume
mgui.interfaces.tables	Provides object interaction via a JTable.
mgui.interfaces.variables
mgui.interfaces.xml
mgui.io	This package contains all classes which perform input/output functions.
mgui.io.domestic	Input/output operations for "domestic" (mgui-specific) data formats.
mgui.io.domestic.datasources
mgui.io.domestic.graphs
mgui.io.domestic.maps
mgui.io.domestic.network
mgui.io.domestic.pipelines
mgui.io.domestic.printing
mgui.io.domestic.shapes
mgui.io.domestic.variables
mgui.io.domestic.videos
mgui.io.domestic.views
mgui.io.foreign.caret
mgui.io.foreign.freesurfer
mgui.io.foreign.minc
mgui.io.foreign.pajek
mgui.io.foreign.vol
mgui.io.standard.gifti
mgui.io.standard.xml
mgui.io.standard.xml.x3d
mgui.morph.sections
mgui.neuro.graphs
mgui.neuro.imaging.camino
mgui.numbers
mgui.pipelines	Provides a framework for defining and running processing pipelines in the ModelGUI environment.
mgui.util

Uses of XMLObject in mgui.datasources

Subinterfaces of XMLObject in mgui.datasources

Modifier and Type	Interface	Description
interface	DataSourceItem	An item (i.e., table or query) in a DataSource.

Classes in mgui.datasources that implement XMLObject

Modifier and Type	Class	Description
class	DataConnection	Specifies a basic JDBC database connection, including: JDBC driver URL Connection name File location Login Password //TODO implement security on this
class	DataField	Object to specify a field data type and length.
class	DataQuery	Represents an SQL query.
class	DataSource	Acts as a port into the JDBC interface.
class	DataTable	General data table object specifying the organization of data into fields.
class	DataTableSet	Object stores a list of DataTable objects, all representing tables in a single DataSource

Uses of XMLObject in mgui.geometry

Subinterfaces of XMLObject in mgui.geometry

Modifier and Type	Interface	Description
interface	Shape	This is the base interface for all shapes in mgui.

Classes in mgui.geometry that implement XMLObject

Modifier and Type	Class	Description
class	Box3D	Box in R3 with base point and three orthogonal axis vectors (denoted by S, T, and R, respectively).
class	Circle2D	Represents a 2D circle.
class	Cube3D	Represents a 3 dimensional cube object, using a Point3f, two Vector3f's and a float.
class	Ellipse2D	Represents an ellipse shape.
class	Graph2D	Represents a graph as a 2D geometric shape.
class	Graph3D	Represents a graph as a 3D geometric shape.
class	Grid3D	Holds a 3D array of values and a Box3D defining the distribution of these values in R3.
class	LineSegment2D	Represents a line segment in R2.
class	LineSegment3D	Represents a line segment in R3.
class	Mesh3D	Geometry class to represent a 3D triangular mesh.
class	Plane3D	Represents a plane in 3 dimensions, using a Point3d and a Vector3d (normal)
class	Point2D	Represents a 2D point.
class	PointSet2D	Represents a set of 2D points.
class	PointSet3D	Represents a set of 3D points.
class	Polygon2D	Represents a series of connected 2D points, defining either a polyline or a closed polygon.
class	Polygon3D	Geometry class for a polygon in R3.
class	Radius2D	DEV NOTE: deprecate or change; does not have fixed geometry, thus doesn't fit definition of a Shape.
class	Rect2D	Represents a 2D rectangle.
class	Rect3D	Represents a 3D rectangle shape, defined by four 3D nodes representing BL, BR, TR, TL corners, respectively.
class	Shape2D	Base class to be extended by all 2D shapes.
class	Shape3D	Base class to be extended by all 3D shapes.
class	Sphere3D	Represents a sphere in R3.
class	Text2D	Represents a character string with 2D geometry.
class	Triangle2D	Represents a 2D triangle.
class	Triangle3D	Represents a 3D triangle.
class	Vector2D	Represents a 2D vector, defined by an end-point and a vector.
class	Vector3D	Represents a 3D vector, defined by an end-point and a vector.

Uses of XMLObject in mgui.graphs.networks

Classes in mgui.graphs.networks that implement XMLObject

Modifier and Type	Class	Description
class	AbstractNetworkGraph	A graph which explicitly represents a connected network.
class	AbstractNetworkGraphConnection	Represents an edge (i.e., a connection) in a network graph.
class	AbstractNetworkGraphNode	Represents a node in a network graph.

Uses of XMLObject in mgui.image.util

Classes in mgui.image.util that implement XMLObject

Modifier and Type	Class	Description
class	WindowedColourModel	Colour model useful for representing medical images.

Uses of XMLObject in mgui.interfaces

Classes in mgui.interfaces that implement XMLObject

Modifier and Type	Class	Description
class	InterfaceDisplayPanel	Main interface panel for displaying data graphically.
class	InterfaceSplitPanel	Displays two InterfaceGraphicWindows, split either horizontally or vertically.
class	InterfaceTabbedDisplayPanel	This class extends InterfaceDisplayPanel in order to provide a tabbed window pane, similar to a typical web browser.
class	InterfaceWorkspace	A Workspace acts as a container for all data models and graphics windows.

Uses of XMLObject in mgui.interfaces.attributes

Classes in mgui.interfaces.attributes that implement XMLObject

Modifier and Type	Class	Description
class	Attribute<V>	Class serves as a general-purpose attribute.
class	AttributeList	Stores a list of Attribute objects, and provides methods to access and modify them, as well as set methods to intersect and union with other lists.
class	AttributeSelection<V>	Extends Attribute to allow a list of options, one or none of which is the current value.
class	AttributeSelectionMap<V>	Represents an Attribute with possible values mapped with String keys.

Methods in mgui.interfaces.attributes that return XMLObject

Modifier and Type	Method	Description
static XMLObject	Attribute.getXMLInstance(org.xml.sax.Attributes attributes)
static XMLObject	AttributeList.getXMLInstance(org.xml.sax.Attributes attributes)

Uses of XMLObject in mgui.interfaces.attributes.video

Classes in mgui.interfaces.attributes.video that implement XMLObject

Modifier and Type	Class	Description
class	AttributeObjectVideoTask	Represents a video task which modifies an Attribute.

Methods in mgui.interfaces.attributes.video that return XMLObject

Modifier and Type	Method	Description
static XMLObject	AttributeObjectVideoTask.getXMLInstance(org.xml.sax.Attributes attributes)

Uses of XMLObject in mgui.interfaces.console

Classes in mgui.interfaces.console that implement XMLObject

Modifier and Type	Class	Description
class	InterfaceConsoleDisplay	Window which displays console output.

Uses of XMLObject in mgui.interfaces.graphics

Classes in mgui.interfaces.graphics that implement XMLObject

Modifier and Type	Class	Description
class	InterfaceGraphic<T extends Tool>	The base class for all graphical interface windows.
class	InterfaceGraphic2D	Graphical interface window for display 2D shapes (Shape2DInt).
class	InterfaceGraphic3D	Interface class for Java3D display.
class	InterfaceGraphicWindow	Provides a title for an InterfaceGraphic window, which is a button.
class	View3D	Represents a specific 3D view, defined by a frozen Camera3D object.

Methods in mgui.interfaces.graphics that return XMLObject

Modifier and Type	Method	Description
static XMLObject	View3D.getXMLInstance(org.xml.sax.Attributes attributes)

Uses of XMLObject in mgui.interfaces.graphics.video

Classes in mgui.interfaces.graphics.video that implement XMLObject

Modifier and Type	Class	Description
class	RotateView3DTask	Video task which rotates a Camera3D over a specific time interval, with the rotation defined by an X and a Y angle.
class	SetView3DTask
class	Video	Represents a video schedule, using a list of VideoTask objects which are activated at specific time points.
class	Video3D	A Video operating on an InterfaceGraphic3D window or its associated objects.
class	VideoTask	Base class for a video task, which manipulates an InterfaceGraphic window or its associated InterfaceObjects, over a specified time interval.
class	VideoTask3D	Base class for video tasks which operate on an InterfaceGraphic3D window.

Methods in mgui.interfaces.graphics.video that return XMLObject

Modifier and Type	Method	Description
static XMLObject	RotateView3DTask.getXMLInstance(org.xml.sax.Attributes attributes)
static XMLObject	SetView3DTask.getXMLInstance(org.xml.sax.Attributes attributes)
static XMLObject	Video3D.getXMLInstance(org.xml.sax.Attributes attributes)

Uses of XMLObject in mgui.interfaces.graphs

Classes in mgui.interfaces.graphs that implement XMLObject

Modifier and Type	Class	Description
class	AbstractGraphEdge	Abstract representation of a graph edge, connecting two nodes.
class	AbstractGraphNode	Abstract representation of a graph node (vertex), with a specific static 3D locations.
class	DefaultGraph	Default implementation of a Graph in ModelGUI.
class	DefaultGraphEdge	Default implementation of a Graph edge.
class	DefaultGraphNode	Default implementation of a Graph in modelGUI.
class	InterfaceAbstractGraph	Abstract representation of a Graph in modelGUI; extends Jung's SparseGraph
class	InterfaceGraphDisplay	Displays graphs and allows user interaction with them.
class	InterfaceGraphDisplayTitle

Uses of XMLObject in mgui.interfaces.layouts

Classes in mgui.interfaces.layouts that implement XMLObject

Modifier and Type	Class	Description
class	InterfaceLayoutWindow	Provides a window panel which specifies (via InterfaceLayoutObject) and renders a layout containing graphical objects from existing windows or objects.
class	LayoutItem	Specifies an element to be rendered in a InterfaceLayoutDocument.

Uses of XMLObject in mgui.interfaces.maps

Classes in mgui.interfaces.maps that implement XMLObject

Modifier and Type	Class	Description
class	Camera3D	Represents a particular camera position in R3, defined by a center of rotation, line of sight vector, and a distance.
class	ColourMap	Abstract class for mapping values (instances of Comparable) to colours.
class	ContinuousColourMap	Maps colours to values based upon a set of anchors (expressed on the range [0:1]) and an interpolator.
class	DiscreteColourMap	Colour map for discrete 1-to-1 mappings (integers to colours).
class	Map	Represents a coordinate mapping from one coordinate system to another (typically a model system to screen or printer coordinates)
class	Map2D	Maps from a given coordinate system to the screen
class	Map3D	Class to provide an interface for mapping a 3D viewing platform.
class	NameMap	Associates a name with an integer.

Methods in mgui.interfaces.maps that return XMLObject

Modifier and Type	Method	Description
XMLObject	Camera3D.getXMLInstance(org.xml.sax.Attributes attributes)
XMLObject	ContinuousColourMap.getXMLInstance(org.xml.sax.Attributes attributes)
static XMLObject	DiscreteColourMap.getXMLInstance(org.xml.sax.Attributes attributes)
XMLObject	NameMap.getXMLInstance(org.xml.sax.Attributes attributes)

Uses of XMLObject in mgui.interfaces.neuro.imaging.camino

Classes in mgui.interfaces.neuro.imaging.camino that implement XMLObject

Modifier and Type	Class	Description
class	CaminoProcess	Extends JavaProcess specifically for Camino processes.

Uses of XMLObject in mgui.interfaces.pipelines.libraries

Classes in mgui.interfaces.pipelines.libraries that implement XMLObject

Modifier and Type	Class	Description
class	PipelineProcessLibrary	Represents a collection of PipelineProcesses, typically referring to the same underlying software library.

Uses of XMLObject in mgui.interfaces.plots

Classes in mgui.interfaces.plots that implement XMLObject

Modifier and Type	Class	Description
class	InterfacePlotDisplay	General graphic interface for all plots.

Uses of XMLObject in mgui.interfaces.projects

Classes in mgui.interfaces.projects that implement XMLObject

Modifier and Type	Class	Description
class	InterfaceProject	Represents a modelGUI project, which specifies an organizational structure for persistent data related to a common project.
class	ProjectDirectory	Specifies a project directory, including its subdirectories and all prespecified data items that it contains.
class	ProjectInstance	Specifies an element instance in a project (e.g., a subject).

Uses of XMLObject in mgui.interfaces.shapes

Classes in mgui.interfaces.shapes that implement XMLObject

Modifier and Type	Class	Description
class	BoolPolygon2DInt
class	Box3DInt
class	Circle2DInt
class	Ellipse2DInt	Interface for a Ellipse2D shape.
class	Image2DInt	Displays an image inside a Rect2D shape.
class	Image3DInt	Draws a rectangular planar image in R3.
class	InterfaceShape	Abstract base class for all shape interfaces (ShapeInts).
class	IntPolygon2DInt
class	Line2DInt
class	LPolygon2DInt	Light 2D polygon with no attributes (attributes are assignable)
class	LPolygon3DInt
class	Mesh2DInt	A 2D representation of a Mesh3DInt object.
class	Mesh3DInt	Interface for a Mesh3D shape.
class	Plane3DInt
class	Point2DInt
class	PointSet2DInt	Shape interface for a set of 2D vertices.
class	PointSet3DInt	Shape interface for a set of 3D points.
class	Polygon2DInt	Interface for a 2D polygon.
class	Polygon3DInt	Interface for a 3D polygon object.
class	PolygonSet3DInt	Interface for a set of 3D polygons.
class	Rect2DInt	Represents a 2D rectangle.
class	Rect3DInt
class	SectionSet2DInt	Provides a 2D representation of a 3D section set, where it intersects a particular plane.
class	SectionSet3DInt	Represents a set of parallel sections, based upon a reference plane (thisShape), and a spacing value.
class	Shape2DInt	Base class for all interfaces to 2D geometrical shapes.
class	Shape2DSelectionSet
class	Shape3DInt	Base class for all Shape3D interface objects.
class	ShapeModel3D	The top container for all shape interfaces.
class	ShapeSet2DInt	Represents a set of Shape2DInt objects.
class	ShapeSet3DInt	Represents a set of Shape3DInt objects.
class	TensorVolume3DInt
class	TestTextureInt
class	Text2DInt
class	Text2DIntMouseCoords
class	Vector2DInt
class	Vector3DInt
class	VectorSet3DInt
class	VertexDataColumn	Encapsulates a column of vertex-wise numerical data.
class	Volume2DInt	2D sectional representation of a Volume3DInt.
class	Volume3DInt	Class acting as interface to a volume shape, as defined by the Grid3D geometry class.
class	VolumeSet3DInt	A set of Volume3DInt objects which render as an overlay image.
class	X3DScene3DInt

Uses of XMLObject in mgui.interfaces.shapes.attributes

Classes in mgui.interfaces.shapes.attributes that implement XMLObject

Modifier and Type	Class	Description
class	ShapeAttribute<V>	Extends Attribute to indicate shape-specific parameters (e.g., whether a change to the value requires a redraw.

Uses of XMLObject in mgui.interfaces.shapes.dynamic

Classes in mgui.interfaces.shapes.dynamic that implement XMLObject

Modifier and Type	Class	Description
class	Volume4DInt	Volume with 3 space and 1 time dimension.

Uses of XMLObject in mgui.interfaces.shapes.graphs

Classes in mgui.interfaces.shapes.graphs that implement XMLObject

Modifier and Type	Class	Description
class	Graph2DInt	Graph shape represented in R2.
class	Graph3DInt	Represents a graph as a 3D shape.

Uses of XMLObject in mgui.interfaces.shapes.neuro

Classes in mgui.interfaces.shapes.neuro that implement XMLObject

Modifier and Type	Class	Description
class	CorticalHemisphereSet3DInt
class	CorticalSurfaceSet3DInt	Representation of a set of cortical surfaces, including grey matter (GM) interfaces with white matter (WM) and cerebrospinal fluid (CSF).

Uses of XMLObject in mgui.interfaces.shapes.selection

Classes in mgui.interfaces.shapes.selection that implement XMLObject

Modifier and Type	Class	Description
class	ShapeSelectionSet

Uses of XMLObject in mgui.interfaces.shapes.video

Classes in mgui.interfaces.shapes.video that implement XMLObject

Modifier and Type	Class	Description
class	ChangeSectionVideoTask	Video task which changes the current section, either once or multiple times over an interval.

Uses of XMLObject in mgui.interfaces.shapes.volume

Classes in mgui.interfaces.shapes.volume that implement XMLObject

Modifier and Type	Class	Description
class	GridVertexDataColumn	Vertex data column defined for a Volume3DInt.

Uses of XMLObject in mgui.interfaces.tables

Classes in mgui.interfaces.tables that implement XMLObject

Modifier and Type	Class	Description
class	InterfaceDataTable	Interface panel for displaying a data table or query.
class	InterfaceDataTableTitle

Uses of XMLObject in mgui.interfaces.variables

Classes in mgui.interfaces.variables that implement XMLObject

Modifier and Type	Class	Description
class	MatrixInt	Interface for a 2D matrix, represented internally as a Jama matrix of doubles.
class	StringVectorInt	Stores an array of String objects as a variable.
class	VariableInt<T>	An interface to a variable object.
class	VectorInt<T extends MguiNumber>	Represents an array of numeric values.

Uses of XMLObject in mgui.interfaces.xml

Methods in mgui.interfaces.xml with parameters of type XMLObject

Modifier and Type	Method	Description
static void	XMLFunctions.writeToXML(java.io.File file, XMLObject xml)	Writes an XML object to file.

Uses of XMLObject in mgui.io

Classes in mgui.io that implement XMLObject

Modifier and Type	Class	Description
class	DefaultIOOptions	Implements a default IO options object, specifying files and a generic file chooser.
class	InterfaceIOOptions	Extends InterfaceOptions specifically for I/O methods.

Uses of XMLObject in mgui.io.domestic

Classes in mgui.io.domestic that implement XMLObject

Modifier and Type	Class	Description
class	WorkspaceOutputOptions	Specifies options for writing a workspace (i.e., an instance of InterfaceWorkspace) to XML.

Uses of XMLObject in mgui.io.domestic.datasources

Classes in mgui.io.domestic.datasources that implement XMLObject

Modifier and Type	Class	Description
class	DataSourceOutOptions	Specifies options for writing a Data Source to file.
class	ExportDataTableExcelOptions	Options for exporting data from a DataSourceItem to a Microsoft Excel format file.
class	ExportDataTableOptions	Options for exporting data from a data source to an external file format.
class	ExportDataTableTextOptions	Options for exporting data from a data source to a delimited text file.
class	ImportDataTableOptions	Specifies options for importing data to a data source table.
class	ImportDataTableTextOptions	Specifies options for importing data from a text file to a data source table.

Uses of XMLObject in mgui.io.domestic.graphs

Classes in mgui.io.domestic.graphs that implement XMLObject

Modifier and Type	Class	Description
class	GraphInputOptions	General options for loading a graph
class	GraphOutputOptions	General options for writing a graph to file.

Uses of XMLObject in mgui.io.domestic.maps

Classes in mgui.io.domestic.maps that implement XMLObject

Modifier and Type	Class	Description
class	DiscreteColourMapInOptions	Options for inputting a DiscreteColourMap.
class	DiscreteColourMapOutOptions	Options for outputting a DiscreteColourMap.
class	NameMapInOptions
class	NameMapOutOptions	Specifies options for writing a name map (or multiple name maps) to file.
class	Vector3ColourMap	Provides a colour mapping for a vector of size three, such that each element of the vector has a colour assignment, and the resulting colour is a weighting of these colours by x, y, z components:

Uses of XMLObject in mgui.io.domestic.network

Classes in mgui.io.domestic.network that implement XMLObject

Modifier and Type	Class	Description
class	CorticalNetworkMatrixInOptions	Inputs a matrix as a weighted cortical network.

Uses of XMLObject in mgui.io.domestic.pipelines

Classes in mgui.io.domestic.pipelines that implement XMLObject

Modifier and Type	Class	Description
class	PipelineInputOptions	Options for loading a pipeline or multiple pipelines.
class	PipelineOutputOptions

Uses of XMLObject in mgui.io.domestic.printing

Classes in mgui.io.domestic.printing that implement XMLObject

Modifier and Type	Class	Description
class	StlOutputOptions	Options defining an output operation to STL format.

Uses of XMLObject in mgui.io.domestic.shapes

Classes in mgui.io.domestic.shapes that implement XMLObject

Modifier and Type	Class	Description
class	Graph3DOutputOptions	Output options for a Graph3DWriter
class	PointSet2DInputOptions	Options for loading a PointSet2DInt object.
class	PointSet3DDataInputOptions
class	PointSet3DInputOptions	Options for loading a PointSet3DInt object.
class	PolygonSet3DInputOptions	Options for loading a PolygonSet3DInt object.
class	ShapeDataInputOptions	Options for loading vertex-wise data into a shape.
class	ShapeInputOptions	Options for loading an InterfaceShape object.
class	ShapeModel3DInputOptions	Options for loading a ShapeModel3D object.
class	ShapeModel3DOutputOptions	Specifies options for writing a ShapeModel3D object to XML.
class	ShapeOutputOptions	Output options for an InterfaceShapeWriter.
class	SurfaceDataInputOptions
class	SurfaceDataOutputOptions	Options for outputting surface data to a text file (single column)
class	SurfaceInputOptions	Options for inputting a Mesh3DInt object.
class	SurfaceOutputOptions	Standard options for writing a surface to file.
class	VectorSet3DInputOptions	Options for loading a VectorSet3DInt object.
class	VolumeInputOptions	Options specifying a Volume3DInt object.
class	VolumeOutputOptions	Specifies options for outputting a Volume3DInt to persistent storage.

Uses of XMLObject in mgui.io.domestic.variables

Classes in mgui.io.domestic.variables that implement XMLObject

Modifier and Type	Class	Description
class	MatrixInOptions	Options for loading a matrix from file.
class	MatrixOutOptions
class	StringVectorInOptions	Options for reading an array of String objects into a StringVectorInt instance.

Uses of XMLObject in mgui.io.domestic.videos

Classes in mgui.io.domestic.videos that implement XMLObject

Modifier and Type	Class	Description
class	ImageStackVideoOptions	Options for a video stack output operation; i.e., vis ImageStackVideoWriter.
class	VideoInputOptions
class	VideoOutputOptions

Uses of XMLObject in mgui.io.domestic.views

Classes in mgui.io.domestic.views that implement XMLObject

Modifier and Type	Class	Description
class	View3DInputOptions	Options for loading View3D objects.
class	View3DOutputOptions	Options for writing a set of View3D objects to file.

Uses of XMLObject in mgui.io.foreign.caret

Classes in mgui.io.foreign.caret that implement XMLObject

Modifier and Type	Class	Description
class	CaretAreaColourInOptions
class	CaretAreaColourOutputOptions	Options for outputting a DiscreteColourMap as a Caret areacolor file.
class	CaretMetricInOptions
class	CaretMetricOptions	Options for a Caret metric file.
class	CaretPaintInOptions
class	CaretPaintOutOptions
class	CaretSurfaceInOptions	Options specifying how to read a Caret surface
class	CaretSurfaceOutOptions

Uses of XMLObject in mgui.io.foreign.freesurfer

Classes in mgui.io.foreign.freesurfer that implement XMLObject

Modifier and Type	Class	Description
class	FreesurferSurfaceOutputOptions	Options for a FreesurferSurfaceWriter.
class	FreesurferVertexDataInOptions	Options for FreesurferVertexDataLoader.

Uses of XMLObject in mgui.io.foreign.minc

Classes in mgui.io.foreign.minc that implement XMLObject

Modifier and Type	Class	Description
class	MincSurfaceDataInOptions
class	MincSurfaceDataOutOptions

Uses of XMLObject in mgui.io.foreign.pajek

Classes in mgui.io.foreign.pajek that implement XMLObject

Modifier and Type	Class	Description
class	PajekGraphInputOptions	Options for Pajek graph input.

Uses of XMLObject in mgui.io.foreign.vol

Classes in mgui.io.foreign.vol that implement XMLObject

Modifier and Type	Class	Description
class	Volume4DInputOptions
class	VolumeInputOptions

Uses of XMLObject in mgui.io.standard.gifti

Classes in mgui.io.standard.gifti that implement XMLObject

Modifier and Type	Class	Description
class	GiftiInputOptions	Options specific for Gifti surfaces.
class	GiftiOutputOptions	Options for writing a surface to a Gifti format file.

Uses of XMLObject in mgui.io.standard.xml

Classes in mgui.io.standard.xml that implement XMLObject

Modifier and Type	Class	Description
class	XMLOutputOptions	Specifies options for writing an XML object (i.e., an instance of XMLObject).

Fields in mgui.io.standard.xml declared as XMLObject

Modifier and Type	Field	Description
XMLObject	XMLOutputOptions.object

Uses of XMLObject in mgui.io.standard.xml.x3d

Classes in mgui.io.standard.xml.x3d that implement XMLObject

Modifier and Type	Class	Description
class	Vector3DInputOptions

Uses of XMLObject in mgui.morph.sections

Classes in mgui.morph.sections that implement XMLObject

Modifier and Type	Class	Description
class	MorphSections3DInt	Class representing a set of intermediate sections (subsections), such that each subsection holds an iterative morphing representation from some source shape to some target shape.
class	RadialRep2D
class	RadialRep2DInt

Uses of XMLObject in mgui.neuro.graphs

Classes in mgui.neuro.graphs that implement XMLObject

Modifier and Type	Class	Description
class	CorticalNetworkGraph
class	CorticalNetworkGraphConnection
class	CorticalNetworkGraphNode
class	NeuralNetConnection
class	NeuralNetGraph	Extension of JUNG's DirectedSparseGraph designed to specifically represent instances of NeuralNet.
class	NeuralNetNode	Extension of DirectedSparseVertex to specifically represent nodes in neural networks, i.e., containing references to instances of Neuron.

Uses of XMLObject in mgui.neuro.imaging.camino

Classes in mgui.neuro.imaging.camino that implement XMLObject

Modifier and Type	Class	Description
class	CaminoProject

Uses of XMLObject in mgui.numbers

Subinterfaces of XMLObject in mgui.numbers

Modifier and Type	Interface	Description
interface	MguiNumber	Interface for numbers used in ModelGUI.

Classes in mgui.numbers that implement XMLObject

Modifier and Type	Class	Description
class	MguiBoolean	Implementation of MguiNumber for values of type boolean.
class	MguiDouble	Implementation of MguiNumber for values of type double.
class	MguiFloat	Implementation of MguiNumber for values of type float.
class	MguiInteger	Implementation of MguiNumber for values of type int.
class	MguiLong	Implementation of MguiNumber for values of type long.
class	MguiShort	Implementation of MguiNumber for values of type short.

Methods in mgui.numbers that return XMLObject

Modifier and Type	Method	Description
static XMLObject	MguiBoolean.getXMLInstance(org.xml.sax.Attributes attributes)
static XMLObject	MguiDouble.getXMLInstance(org.xml.sax.Attributes attributes)
static XMLObject	MguiFloat.getXMLInstance(org.xml.sax.Attributes attributes)
static XMLObject	MguiInteger.getXMLInstance(org.xml.sax.Attributes attributes)
static XMLObject	MguiLong.getXMLInstance(org.xml.sax.Attributes attributes)
static XMLObject	MguiShort.getXMLInstance(org.xml.sax.Attributes attributes)

Uses of XMLObject in mgui.pipelines

Classes in mgui.pipelines that implement XMLObject

Modifier and Type	Class	Description
class	InterfacePipeline	Represents a series of Tasks that are to be run sequentially, such that the output of a task becomes the input of the subsequent one.
class	JavaProcess	Represents a Java process; i.e., a class containing a main method which allows it to be run as a process.
class	NativeProcess	Represents a native process; i.e., one which runs from the OS command console.
class	PipelineFork	Represents a fork in a pipeline; i.e., a branching point, where the output of the previous process becomes the input of two or more independent pipelines.
class	PipelineProcess	Represents a Java process specification, specified by an executable process (native or Java) and a set of parameters.
class	PipelineProcessInstance	Represents a specific instance of a Java process.
class	PipelineTask	A task is a launchable component of a pipeline.

Uses of XMLObject in mgui.util

Classes in mgui.util that implement XMLObject

Modifier and Type	Class	Description
class	Colour
class	Colour1f
class	Colour2f
class	Colour3f
class	Colour4f

Methods in mgui.util that return XMLObject

Modifier and Type	Method	Description
static XMLObject	Colour1f.getXMLInstance(org.xml.sax.Attributes attributes)
static XMLObject	Colour2f.getXMLInstance(org.xml.sax.Attributes attributes)
static XMLObject	Colour3f.getXMLInstance(org.xml.sax.Attributes attributes)
static XMLObject	Colour4f.getXMLInstance(org.xml.sax.Attributes attributes)