Index

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B

B - Variable in class mgui.geometry.Mesh3D.MeshFace3D

B - Variable in class mgui.geometry.Triangle3D

B - Variable in class mgui.morph.sections.MappedPolygon2D

BACK - Static variable in class mgui.interfaces.shapes.volume.Volume3DRenderer

BACK - Static variable in interface mgui.io.foreign.vol.VolRendConstants

BACKBIAS - Static variable in interface au.edu.unsw.cse.Object3d

background - Variable in class mgui.interfaces.graphics.InterfaceGraphic3D

backgroundNonSelectionColor - Variable in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer

Color to use for the background when the node isn't selected.

backgroundSelectionColor - Variable in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer

Color to use for the background when a node is selected.

bar - Variable in class mgui.interfaces.maps.ContinuousColourBar

base_layer - Variable in class mgui.interfaces.plots.sgt.SgtPlotLayout

base_x - Variable in class mgui.interfaces.plots.sgt.SgtCartesianLayout

Names for the base X and Y axes

BASE_X - Static variable in class mgui.interfaces.plots.sgt.SgtCartesianLayout

base_y - Variable in class mgui.interfaces.plots.sgt.SgtCartesianLayout

Names for the base X and Y axes

BASE_Y - Static variable in class mgui.interfaces.plots.sgt.SgtCartesianLayout

Base64Binary - mgui.interfaces.xml.XMLObject.XMLEncoding

Base64Binary - mgui.io.standard.gifti.GiftiOutputOptions.GiftiEncoding

Base64BinaryGZipped - mgui.interfaces.xml.XMLObject.XMLEncoding

Base64BinaryZipped - mgui.interfaces.xml.XMLObject.XMLEncoding

baseGrid - Variable in class mgui.interfaces.shapes.dynamic.Volume4DInt

basePt - Variable in class mgui.geometry.Box3D

batch - Variable in class mgui.interfaces.plots.MatrixPlotDataSource

batch - Variable in class mgui.interfaces.plots.PlotXYDataSource

batch - Variable in class mgui.interfaces.variables.VariableInt

below - Variable in class mgui.interfaces.shapes.mesh.MeshPlaneMaskOptions

Bezier3d - Class in au.edu.unsw.cse

Bezier3d(Point3d[][], Color, Color, int) - Constructor for class au.edu.unsw.cse.Bezier3d

Create a Bezier patch given 4x4 grid of controls Colours are used for wireframe in s direction and t direction Bezier is approximated by a steps x steps quad mesh

BezierToVRML - Class in au.edu.unsw.cse

BezierToVRML() - Constructor for class au.edu.unsw.cse.BezierToVRML

bgcolor - Static variable in class au.edu.unsw.cse.View3d

BiexponentialFunction - Class in mgui.neuro.components.cortical.functions

Simplistic bi-exponential representation of population activity in a cortical region, which responds to input events.

BiexponentialFunction(double, double, double, double) - Constructor for class mgui.neuro.components.cortical.functions.BiexponentialFunction

big_endian - Variable in class mgui.io.standard.nifti.Nifti1Dataset

BigEndian - mgui.io.standard.gifti.GiftiOutputOptions.ByteOrder

Bin(double, double) - Constructor for class mgui.stats.Histogram.Bin

bin_size - Variable in class mgui.stats.Histogram

Binary - mgui.io.domestic.printing.StlOutputOptions.Format

BINARY - Static variable in class mgui.datasources.DataTypes

BinaryFull - mgui.io.domestic.variables.MatrixInOptions.Format

binarySearch(List<? extends T>, Comparable<? super T>) - Static method in class mgui.util.arCollections

Modified binary search works around the generics crap.

BinarySparse - mgui.io.domestic.variables.MatrixInOptions.Format

bins - Variable in class mgui.stats.Histogram

bitpix - Variable in class mgui.io.standard.nifti.Nifti1Dataset

blnUpdate - Variable in class mgui.interfaces.shapes.SectionSet3DInt

BLOB - Static variable in class mgui.datasources.DataTypes

BOF() - Method in class mgui.datasources.DataRecordSet

Boolean - mgui.io.domestic.shapes.ShapeDataInputOptions.Format

Boolean - mgui.io.domestic.shapes.SurfaceDataInputOptions.DataType

BOOLEAN - Static variable in class mgui.datasources.DataTypes

booleanNodes - Variable in class mgui.interfaces.shapes.BoolPolygon2DInt

BoolPolygon2DInt - Class in mgui.interfaces.shapes

BoolPolygon2DInt() - Constructor for class mgui.interfaces.shapes.BoolPolygon2DInt

BoolPolygon2DInt(Polygon2D) - Constructor for class mgui.interfaces.shapes.BoolPolygon2DInt

BoolPolygon2DInt(Polygon2DInt) - Constructor for class mgui.interfaces.shapes.BoolPolygon2DInt

borderSelectionColor - Variable in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer

Color to use for the focus indicator when the node has focus.

bottom() - Method in class au.edu.unsw.cse.GiftWrap

bottom_dist - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions

bottom_z - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions

boundBox - Variable in class mgui.interfaces.shapes.Shape3DInt

boundBox2D - Variable in class mgui.interfaces.shapes.SectionSet3DInt

boundBoxNode - Variable in class mgui.interfaces.shapes.Shape3DInt

bounds - Variable in class mgui.geometry.Text2D

bounds - Variable in class mgui.interfaces.maps.Map2D

bounds - Variable in class mgui.interfaces.shapes.Shape2DInt

bounds - Variable in class mgui.io.foreign.fsl.FSLVolumeMetadata

bounds_group - Variable in class mgui.interfaces.shapes.Shape3DInt

bounds_shape - Variable in class mgui.interfaces.shapes.Shape3DInt

boundSphere - Variable in class mgui.interfaces.shapes.Shape3DInt

box_node - Variable in class mgui.interfaces.shapes.Volume3DInt

box_size - Variable in class mgui.interfaces.maps.DiscreteColourMapLayout

Box3D - Class in mgui.geometry

Box in R3 with base point and three orthogonal axis vectors (denoted by S, T, and R, respectively).

Box3D() - Constructor for class mgui.geometry.Box3D

Box3D(Box3D) - Constructor for class mgui.geometry.Box3D

Box3D(Point3f, Vector3f, Vector3f, Vector3f) - Constructor for class mgui.geometry.Box3D

Box3DInt - Class in mgui.interfaces.shapes

Box3DInt() - Constructor for class mgui.interfaces.shapes.Box3DInt

Box3DInt(Box3D) - Constructor for class mgui.interfaces.shapes.Box3DInt

boxes - Variable in class mgui.interfaces.InterfaceStatusBarPanel

brain_mask - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions

brain_surface - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions

Bspline3d - Class in au.edu.unsw.cse

Bspline3d(Point3d[][], Color, Color, int) - Constructor for class au.edu.unsw.cse.Bspline3d

Create a Bspline patch given 4x4 grid of controls Colours are used for wireframe in s direction and t direction Bspline is approximated by a steps x steps quad mesh

BT_BLANK - Static variable in class mgui.interfaces.InterfaceDialogBox

BT_OK - Static variable in class mgui.interfaces.InterfaceDialogBox

BT_OK_CANCEL - Static variable in class mgui.interfaces.InterfaceDialogBox

buffer - Variable in class mgui.morph.sections.MappedPolygon2DPath

buffer_size - Variable in class mgui.io.util.BufferedRandomAccessFile

BufferedRandomAccessFile - Class in mgui.io.util

Buffered version of RandomAccessFile.

BufferedRandomAccessFile(RandomAccessFile) - Constructor for class mgui.io.util.BufferedRandomAccessFile

BufferedRandomAccessFile(RandomAccessFile, int, ByteOrder, long) - Constructor for class mgui.io.util.BufferedRandomAccessFile

build() - Method in class au.edu.unsw.cse.DivideAndConquer

build() - Method in class au.edu.unsw.cse.GiftWrap

build() - Method in class au.edu.unsw.cse.HullAlgorithm

build() - Method in class au.edu.unsw.cse.Incremental

build() - Method in class au.edu.unsw.cse.QuickHull

build(int, int, ProgressUpdater, int) - Method in class au.edu.unsw.cse.DivideAndConquer

recursive build

build(ProgressUpdater) - Method in class au.edu.unsw.cse.DivideAndConquer

build(ProgressUpdater) - Method in class au.edu.unsw.cse.GiftWrap

build(ProgressUpdater) - Method in class au.edu.unsw.cse.HullAlgorithm

build(ProgressUpdater) - Method in class au.edu.unsw.cse.Incremental

build(ProgressUpdater) - Method in class au.edu.unsw.cse.QuickHull

Build - Class in mgui.build

Builds an executable file based upon parameters including: -libdir: library directory -classpathfile: file containing classpath entries -initfile: file to init environment -maxheapsize: max heap size for JVM (default 1000m) -maxstacksize: max stack size for JVM (default 50m)

Build() - Constructor for class mgui.build.Build

build2D() - Method in class au.edu.unsw.cse.DivideAndConquer

build2D() - Method in class au.edu.unsw.cse.GiftWrap

build2D() - Method in class au.edu.unsw.cse.HullAlgorithm

build2D() - Method in class au.edu.unsw.cse.Incremental

build2D() - Method in class au.edu.unsw.cse.QuickHull

build2D(int, int) - Method in class au.edu.unsw.cse.DivideAndConquer

recursive build

buttonPanel - Variable in class mgui.interfaces.InterfaceDialogBox

buttons - Variable in class mgui.interfaces.tools.InterfaceTool2DPanel

Deprecated.

buttonType - Variable in class mgui.interfaces.InterfaceDialogBox

byRef - Variable in class mgui.interfaces.shapes.volume.Volume3DTexture

BYTE - Static variable in class mgui.datasources.DataTypes

byte_order - Variable in class mgui.io.foreign.duff.DuffSurfaceHeader

byte_order - Variable in class mgui.io.foreign.freesurfer.FreesurferSurfaceOutputOptions

byte_order - Variable in class mgui.io.standard.gifti.GiftiOutputOptions

byteArrayToFloat(byte[], ByteOrder) - Static method in class mgui.io.util.IoFunctions

byteArrayToInt(byte[], ByteOrder) - Static method in class mgui.io.util.IoFunctions

byteArrayToShort(byte[], ByteOrder) - Static method in class mgui.io.util.IoFunctions

byteArrayToVal(byte[], int, ByteOrder) - Static method in class mgui.io.util.IoFunctions

byteOrder - Variable in class mgui.io.standard.nifti.NiftiMetadata

byteOrder - Variable in class mgui.io.util.ByteOrderedFile

ByteOrderedFile - Class in mgui.io.util

Extends RandomAccessFile to support byte order.

ByteOrderedFile(File, String) - Constructor for class mgui.io.util.ByteOrderedFile

ByteOrderedFile(String, String) - Constructor for class mgui.io.util.ByteOrderedFile

bytesPerVoxel(short) - Method in class mgui.io.standard.nifti.Nifti1Dataset

Return bytes per voxel for each nifti-1 datatype

byteToInt(byte) - Static method in class mgui.geometry.volume.VolumeFunctions

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