Index

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _
All Classes|All Packages

R

r() - Method in class au.edu.unsw.cse.Point3d

R - mgui.geometry.volume.VolumeFunctions.VolumeAxis

r_size - Variable in class mgui.geometry.Grid3D

R_temp - Variable in class mgui.interfaces.graphics.InterfaceGraphic3D

R_temp2 - Variable in class mgui.interfaces.graphics.InterfaceGraphic3D

Ra - Variable in class mgui.neuro.components.compartments.SimpleCompartment

RadialNodes - Variable in class mgui.morph.sections.RadialRepresentation

RadialRep2D - Class in mgui.morph.sections

RadialRep2D() - Constructor for class mgui.morph.sections.RadialRep2D

RadialRep2D(Polygon2D) - Constructor for class mgui.morph.sections.RadialRep2D

RadialRep2D(RadialRepresentation) - Constructor for class mgui.morph.sections.RadialRep2D

RadialRep2DInt - Class in mgui.morph.sections

RadialRep2DInt() - Constructor for class mgui.morph.sections.RadialRep2DInt

RadialRep2DInt(Polygon2D) - Constructor for class mgui.morph.sections.RadialRep2DInt

RadialRep2DInt(RadialRep2D) - Constructor for class mgui.morph.sections.RadialRep2DInt

RadialRep2DInt(RadialRepresentation) - Constructor for class mgui.morph.sections.RadialRep2DInt

RadialRepresentation - Class in mgui.morph.sections

RadialRepresentation() - Constructor for class mgui.morph.sections.RadialRepresentation

RadialRepresentation(Polygon2D) - Constructor for class mgui.morph.sections.RadialRepresentation

radii - Variable in class mgui.morph.sections.RadialRep2D

radius - Variable in class mgui.geometry.Circle2D

radius - Variable in class mgui.geometry.mesh.EnergySphere

radius - Variable in class mgui.geometry.Sphere3D

Radius2D - Class in mgui.geometry

DEV NOTE: deprecate or change; does not have fixed geometry, thus doesn't fit definition of a Shape.

Radius2D() - Constructor for class mgui.geometry.Radius2D

Radius2D(float, float) - Constructor for class mgui.geometry.Radius2D

Set this radius with angle and length double values

Radius2D(MguiFloat, MguiFloat) - Constructor for class mgui.geometry.Radius2D

Set this radius with angle and length arDouble objects

random() - Static method in class au.edu.unsw.cse.Point3d

Random in unit cube

RANDOM_600 - Static variable in class mgui.interfaces.maps.DiscreteColourMap

randomGaussian() - Static method in class au.edu.unsw.cse.Point3d

Random Gaussian

randomInCircle() - Static method in class au.edu.unsw.cse.Point3d

Random in unit circle

randomInSphere() - Static method in class au.edu.unsw.cse.Point3d

Random in unit sphere

randomOnCircle() - Static method in class au.edu.unsw.cse.Point3d

Random on unit circle

randomOnSphere() - Static method in class au.edu.unsw.cse.Point3d

Random on unit sphere

Raw - mgui.io.domestic.network.CorticalNetworkMatrixInOptions.Format

rAxis - Variable in class mgui.geometry.Box3D

ray - Variable in class mgui.geometry.neuro.mesh.SampleRay

rDim - Variable in class mgui.interfaces.shapes.volume.Volume3DTexture

read() - Method in class mgui.io.util.BufferedRandomAccessFile

readChar() - Method in class mgui.io.util.BufferedRandomAccessFile

readData() - Method in class mgui.io.standard.nifti.Nifti1Dataset

Read all the data into one byte array.

readDouble() - Method in class mgui.io.util.BufferedRandomAccessFile

readDoubleCorrect() - Method in class mgui.io.util.EndianCorrectInputStream

readDoubleCorrect will return a double from the stream

readDoubleTmcrs(short, short, short) - Method in class mgui.io.standard.nifti.Nifti1Dataset

Read one 1D timecourse from a 4D dataset, ie all T values for a given XYZ location.

readDoubleVol(short) - Method in class mgui.io.foreign.wunil.WunilDataset

Read one 3D volume from disk and return it as 3D double array.

readDoubleVol(short) - Method in class mgui.io.standard.nifti.Nifti1Dataset

Read one 3D volume from disk and return it as 3D double array

readFloat() - Method in class mgui.io.util.BufferedRandomAccessFile

readFloatCorrect() - Method in class mgui.io.util.EndianCorrectInputStream

readFloatCorrect will return a float from the stream

readFromFile(File) - Method in class mgui.io.standard.nifti.NiftiMetadata

readHeader() - Method in class mgui.io.foreign.wunil.WunilDataset

Read header information into memory.

readHeader() - Method in class mgui.io.standard.nifti.Nifti1Dataset

Read header information into memory

readHeader() - Method in class mgui.io.standard.nifti.NiftiVolumeLoader

readHeader(File) - Method in class mgui.io.foreign.duff.DuffSurfaceHeader

readHeader(File) - Method in class mgui.io.foreign.fsl.FSLVolumeMetadata

Reads header information from file.

readHeader(File) - Method in class mgui.io.foreign.trackvis.TrackVisTractHeader

readInstanceList(File) - Method in class mgui.interfaces.projects.InterfaceProjectDialogBox

readInt() - Method in class mgui.io.util.BufferedRandomAccessFile

readIntCorrect() - Method in class mgui.io.util.EndianCorrectInputStream

readIntCorrect will return an int from the stream

readLong() - Method in class mgui.io.util.BufferedRandomAccessFile

readLongCorrect() - Method in class mgui.io.util.EndianCorrectInputStream

readLongCorrect will return a long from the stream

readOrderedChar() - Method in class mgui.io.util.ByteOrderedFile

readOrderedDouble() - Method in class mgui.io.util.ByteOrderedFile

readOrderedFloat() - Method in class mgui.io.util.ByteOrderedFile

readOrderedInt() - Method in class mgui.io.util.ByteOrderedFile

readOrderedLong() - Method in class mgui.io.util.ByteOrderedFile

readShort() - Method in class mgui.io.util.BufferedRandomAccessFile

readShortCorrect() - Method in class mgui.io.util.EndianCorrectInputStream

readShortCorrect will return a short from the stream

readVolume(int, DataType, ProgressUpdater) - Method in interface mgui.interfaces.shapes.volume.VolumeMetadata

Reads the 3D volume at voxel dimension t.

readVolume(int, DataType, ProgressUpdater) - Method in class mgui.io.foreign.fsl.FSLVolumeMetadata

readVolume(int, DataType, ProgressUpdater) - Method in class mgui.io.foreign.wunil.WunilDataset

readVolume(int, DataType, ProgressUpdater) - Method in class mgui.io.standard.nifti.NiftiMetadata

readVolume(File, int, DataType, ProgressUpdater) - Method in class mgui.io.foreign.fsl.FSLVolumeMetadata

Reads the 3D volume at the specified volume t, from data_file.

ready() - Static method in class mgui.interfaces.InterfaceEnvironment

This method should be called once a Workspace is instantiated and the Session is ready for use.

record_set - Variable in class mgui.datasources.LinkedDataStream

recordSet - Variable in class mgui.datasources.DataRecordSet

recordSet - Variable in class mgui.interfaces.datasources.DataTableModel

Rect2D - Class in mgui.geometry

Represents a 2D rectangle.

Rect2D() - Constructor for class mgui.geometry.Rect2D

Rect2D(float, float, float, float) - Constructor for class mgui.geometry.Rect2D

Rect2D(float, float, float, float, Vector2f) - Constructor for class mgui.geometry.Rect2D

Rect2D(Rect2D) - Constructor for class mgui.geometry.Rect2D

Rect2D(Point2f, Point2f) - Constructor for class mgui.geometry.Rect2D

Rect2D(Point2f, Point2f, Vector2f) - Constructor for class mgui.geometry.Rect2D

Rect2DInt - Class in mgui.interfaces.shapes

Represents a 2D rectangle.

Rect2DInt() - Constructor for class mgui.interfaces.shapes.Rect2DInt

Rect2DInt(Rect2D) - Constructor for class mgui.interfaces.shapes.Rect2DInt

Rect3D - Class in mgui.geometry

Represents a 3D rectangle shape, defined by four 3D nodes representing BL, BR, TR, TL corners, respectively.

Rect3D() - Constructor for class mgui.geometry.Rect3D

Rect3D(ArrayList<Point3f>) - Constructor for class mgui.geometry.Rect3D

Rect3D(Rect3D) - Constructor for class mgui.geometry.Rect3D

Rect3D(Point3f[]) - Constructor for class mgui.geometry.Rect3D

Rect3DInt - Class in mgui.interfaces.shapes

Rect3DInt() - Constructor for class mgui.interfaces.shapes.Rect3DInt

Rect3DInt(Rect3D) - Constructor for class mgui.interfaces.shapes.Rect3DInt

redirect - Variable in class mgui.interfaces.tools.shapes.ToolCreateMeshFromPolylinesOptions

Redrawn - mgui.interfaces.graphics.GraphicEvent.EventType

Redrawn - mgui.interfaces.graphics.WindowEvent.EventType

ref_camera - Variable in class mgui.interfaces.shapes.volume.Volume3DRenderer

Reference - mgui.interfaces.xml.XMLObject.XMLType

refresh - Variable in class mgui.interfaces.graphics.video.Video

refresh() - Method in class mgui.datasources.LinkedDataStream

refreshDataSource() - Method in class mgui.interfaces.datasources.InterfaceDatasourcePanel

refreshModel() - Method in class mgui.interfaces.shapes.ShapeModel3D

Updates this model by setting its shape scene node.

regenerateDisplay() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D

Regenerates all the shapes in this display.

region - Variable in class mgui.neuro.graphs.CorticalNetworkGraphNode

regions - Variable in class mgui.neuro.networks.CorticalNetwork

register() - Method in class mgui.interfaces.gui.AbstractProgressUpdater

register() - Method in class mgui.interfaces.gui.InterfaceProgressBar

Registers this progress bar with its display panel (i.e., by calling registerProgressBar().

register() - Method in interface mgui.interfaces.ProgressUpdater

Registers this progress updater with the ModelGUI session

register() - Method in class mgui.interfaces.shapes.InterfaceShape

Registers this shape with the current session, if it hasn't already been done, by assigning it a unique identifier.

register() - Method in class mgui.interfaces.shapes.ShapeSet3DInt

registerCamera(Camera3D) - Method in class mgui.interfaces.shapes.ShapeSet3DInt

registerCameraListener(Camera3D) - Method in class mgui.interfaces.shapes.Shape3DInt

registerCameraListener(Camera3D) - Method in class mgui.interfaces.shapes.Volume3DInt

registerCameras(ArrayList<Camera3D>) - Method in class mgui.interfaces.shapes.ShapeSet3DInt

registered_cameras - Variable in class mgui.interfaces.shapes.ShapeSet3DInt

registerModelClip(ModelClip) - Method in class mgui.interfaces.shapes.util.ClipPlane

registerPipelineProcessLibrary(PipelineProcessLibrary) - Static method in class mgui.interfaces.InterfaceEnvironment

Registers a new pipeline process library.

registerProcess(CaminoProcess) - Static method in class mgui.neuro.imaging.camino.CaminoEnvironment

registerProgressBar(InterfaceProgressBar) - Method in class mgui.interfaces.InterfaceDisplayPanel

registerProgressBar(InterfaceProgressBar) - Method in class mgui.interfaces.InterfaceStatusBarPanel

registerSubmenus(JMenu) - Method in class mgui.interfaces.menus.InterfacePopupMenu

registerSubmenus(JMenu, String) - Method in class mgui.interfaces.menus.InterfacePopupMenu

registerTool(Tool) - Method in class mgui.interfaces.tools.shapes.util.RulerDialog

Registers a ruler tool with this dialog, which registers that the tool requires the use of this dialog.

regular - Variable in class mgui.io.standard.nifti.Nifti1Dataset

regular_background - Variable in class mgui.interfaces.graphics.InterfaceGraphicWindow.GraphicButton

ReifiedArrayList<E> - Class in mgui.collections

Implements a version of ArrayList which is reified (meaning that its generic type is retrievable.

ReifiedArrayList() - Constructor for class mgui.collections.ReifiedArrayList

ReifiedArrayList(ArrayList<E>) - Constructor for class mgui.collections.ReifiedArrayList

RELATIVE - mgui.io.standard.xml.svg.SVGParser.Mode

relay_listeners - Variable in class mgui.interfaces.plots.InterfacePlot

releaseAttributes() - Method in class mgui.interfaces.shapes.LPolygon2DInt

releaseAttributes() - Method in class mgui.interfaces.shapes.LPolygon3DInt

releaseData() - Method in class mgui.io.foreign.vol.VolFileLoader

releaseScene3DChildren() - Method in class mgui.interfaces.shapes.Shape3DInt

remove() - Method in class mgui.interfaces.shapes.util.SectionSetIterator

remove() - Method in class mgui.morph.sections.util.MorphSectionSetIterator

remove(int) - Method in class mgui.interfaces.maps.NameMap

remove(String) - Method in class mgui.interfaces.attributes.AttributeList

remove(String) - Method in class mgui.interfaces.maps.NameMap

remove(String) - Method in class mgui.util.OptionList

remove(Attribute<?>) - Method in class mgui.interfaces.attributes.AttributeList

remove(InterfacePipeline) - Method in class mgui.pipelines.PipelineFork

remove(PipelineTask) - Method in class mgui.pipelines.InterfacePipeline

removeActionListener(ActionListener) - Method in class mgui.interfaces.maps.ContinuousColourBar

removeAllEdges() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph

Removes all edges in this Graph.

removeAllFaces() - Method in class mgui.geometry.Mesh3D

removeAllNodes() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph

Removes all nodes in this Graph.

removeAllPanels() - Method in class mgui.interfaces.InterfaceDisplayPanel

removeAllVertices() - Method in class mgui.geometry.Mesh3D

Removes all vertices in this mesh.

removeAllVertices(boolean) - Method in class mgui.geometry.Mesh3D

Removes all vertices in this mesh.

removeAnchor(int) - Method in class mgui.interfaces.maps.ContinuousColourBar

removeAnchor(int) - Method in class mgui.interfaces.maps.ContinuousColourMap

removeAnchors(MguiNumber, MguiNumber) - Method in class mgui.interfaces.maps.ContinuousColourMap

Remove all anchor points between min and max

removeAttributeListener(AttributeListener) - Method in class mgui.interfaces.attributes.Attribute

removeAttributeListener(AttributeListener) - Method in class mgui.interfaces.attributes.AttributeList

removeAxis(String) - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout

removeAxis(String) - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout

Removes the axis with the specified name from this layout.

removeBadFaces(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions

removeCategory(String) - Method in class mgui.interfaces.attributes.AttributeList

removeCellEditorListener(CellEditorListener) - Method in class mgui.interfaces.trees.AbstractTreeCellEditor

removeChangeListener(ChangeListener) - Method in class mgui.interfaces.stats.HistogramPlot

Remove a ChangeListener from this plot panel

removeChannel(String) - Method in class mgui.interfaces.io.DataBridgeNamedXY

removeChannel(String) - Method in interface mgui.interfaces.io.DataOutputStreamNamedXY

Removes the channel named channel.

removeChannel(String) - Method in class mgui.interfaces.plots.MatrixPlotDataSource

Removes a channel for this data source.

removeChild(InterfaceTreeNode) - Method in class mgui.interfaces.trees.InterfaceTreeNode

removeColourMap(String) - Method in class mgui.interfaces.shapes.InterfaceShape

removeCommas(String) - Static method in class mgui.numbers.MguiInteger

removeCommas(String) - Static method in class mgui.numbers.MguiLong

removeCommas(String) - Static method in class mgui.numbers.MguiShort

removeComponent(DynamicModelComponent) - Method in class mgui.models.dynamic.DynamicModelEngine

removeConnection(DynamicModelComponent) - Method in interface mgui.models.dynamic.DynamicModelComponent

removeConnection(DynamicModelComponent) - Method in class mgui.neuro.components.AbstractNeuroComponent

removeDataField(DataTable, DataField) - Method in class mgui.datasources.DataSource

Attempts to remove a field from the specified table in this data source.

removeDataLink(String) - Method in class mgui.interfaces.shapes.VertexDataColumn

Removes the data link specified by name from this column

removeDataLink(String, String) - Method in class mgui.interfaces.shapes.InterfaceShape

removeDataQuery(DataQuery) - Method in class mgui.datasources.DataSource

Remove an SQL query from this data source.

removeDataSource(DataSource) - Method in class mgui.interfaces.InterfaceWorkspace

removeDataSourceDriver(String) - Static method in class mgui.interfaces.InterfaceEnvironment

Removes the specified data source driver from the environment.

removeDataSourceListener(DataSourceListener) - Method in interface mgui.interfaces.io.InterfaceDataSource

removeDataSourceListener(DataSourceListener) - Method in class mgui.interfaces.plots.MatrixPlotDataSource

removeDataSourceListener(DataSourceListener) - Method in class mgui.interfaces.plots.PlotXYDataSource

removeDataSourceListener(DataSourceListener) - Method in class mgui.io.domestic.shapes.VolumeFileDataSource

removeDataSourceListener(DataSourceListener) - Method in class mgui.models.environments.AbstractEnvironmentDataSource

removeDataTable(DataTable) - Method in class mgui.datasources.DataSource

Removes the specified table from this data source.

removeDendrite(Dendrite) - Method in class mgui.neuro.components.AbstractDendrites

removeDendrite(Dendrite) - Method in interface mgui.neuro.components.Dendrites

removeDisplayListener(DisplayListener) - Method in class mgui.interfaces.graphics.Graphic2DGrid

removeDisplayListener(DisplayListener) - Method in class mgui.interfaces.InterfacePanel

removeDisplayPanelListener(DisplayPanelListener) - Method in class mgui.interfaces.InterfaceDisplayPanel

removeDuplicateFaces(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions

removeDuplicateNodes(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions

Removes all duplicate vertices from mesh, and changes mesh in place.

removeDynamicListener(DynamicPipelineListener) - Method in class mgui.pipelines.InterfacePipeline

removeDynamicListener(DynamicPipelineListener) - Method in class mgui.pipelines.PipelineLauncher

removeDynamicModel(InterfaceAbstractModel) - Method in class mgui.interfaces.InterfaceWorkspace

removeEditor(TreeCellEditor) - Method in class mgui.interfaces.trees.InterfaceTreeCellEditor

removeExtension(int) - Method in class mgui.io.standard.nifti.Nifti1Dataset

Remove an extension from a header

removeFace(int) - Method in class mgui.geometry.Mesh3D

removeFaces(TreeSet<Integer>) - Method in class mgui.geometry.Mesh3D

Remove a list of faces.

removeField(String) - Method in class mgui.datasources.DataTable

removeField(DataField) - Method in class mgui.datasources.DataTable

removeFilter() - Method in class mgui.interfaces.datasources.DataTableModel

removeGraph(InterfaceAbstractGraph) - Method in class mgui.interfaces.InterfaceWorkspace

removeGraphEdge(AbstractGraphEdge) - Method in class mgui.graphs.networks.AbstractNetworkGraph

removeGraphEdge(AbstractGraphEdge) - Method in class mgui.interfaces.graphs.DefaultGraph

Removes the given graph edge.

removeGraphicListener(InterfaceGraphicListener) - Method in class mgui.interfaces.graphics.InterfaceGraphic

removeGraphicListener(InterfaceGraphicListener) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D

removeGraphicMouseListener(GraphicMouseListener) - Method in class mgui.interfaces.InterfaceDisplayPanel

removeGraphicMouseListener(GraphicMouseListener) - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel

removeGraphics3D(InterfaceGraphic3D) - Method in class mgui.interfaces.shapes.ShapeModel3D

removeGraphListener(InterfaceGraphListener) - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph

removeGraphNode(String) - Method in class mgui.interfaces.graphs.DefaultGraph

Removes the node corresponding to label.

removeGraphNode(AbstractGraphNode) - Method in class mgui.graphs.networks.AbstractNetworkGraph

removeGraphNode(AbstractGraphNode) - Method in class mgui.interfaces.graphs.DefaultGraph

Removes the given node.

removeGrid(Graphic2DGrid) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D

removeInputStream(DataInputStream<T>) - Method in class mgui.interfaces.plots.InterfacePlot

removeInputStreamListener(DataInputStreamListener<T>) - Method in class mgui.interfaces.io.DataBridge

removeInputStreamListener(DataInputStreamListener<T>) - Method in interface mgui.interfaces.io.DataInputStream

removeItem(int) - Method in class mgui.interfaces.maps.ValueMap

removeLayer(String) - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout

Removes the layer corresponding the the specified name from this layout.

removeLayoutComponent(Component) - Method in class au.edu.unsw.cse.StackLayout

removeLayoutComponent(Component) - Method in class mgui.interfaces.layouts.CategoryLayout

removeLayoutComponent(Component) - Method in class mgui.interfaces.layouts.LineLayout

removeLightSource(DirectionalLight) - Method in class mgui.interfaces.maps.Camera3D

removeLightSource(DirectionalLight) - Method in class mgui.interfaces.maps.Map3D

removeListener(NetworkGraphListener) - Method in class mgui.graphs.networks.AbstractNetworkGraphConnection

removeListener(NetworkGraphListener) - Method in class mgui.graphs.networks.AbstractNetworkGraphNode

removeListener(DataSourceListener) - Method in class mgui.datasources.DataSource

removeListener(AxesListener) - Method in class mgui.interfaces.graphics.util.Axes3D

removeListener(VideoListener) - Method in class mgui.interfaces.graphics.video.Video

removeListener(Camera3DListener) - Method in class mgui.interfaces.maps.Camera3D

removeListener(InterfaceNeuroComponentListener) - Method in class mgui.neuro.components.AbstractNeuroComponent

removeListener(QueryListener) - Method in class mgui.interfaces.queries.InterfaceQuery

Removes a query listener from this query.

removeListener(VertexDataColumnListener) - Method in class mgui.interfaces.shapes.VertexDataColumn

removeListener(ToolInputListener) - Method in class mgui.interfaces.tools.ToolBehavior3DAdapter

removeListener(ToolInputListener) - Method in class mgui.interfaces.tools.ToolInputAdapter

removeListener(ToolListener) - Method in class mgui.interfaces.tools.dialogs.DialogTool

removeListener(ToolListener) - Method in class mgui.interfaces.tools.graphics.Tool2D

removeListener(ToolListener) - Method in class mgui.interfaces.tools.graphics.Tool3D

removeListener(ToolListener) - Method in class mgui.interfaces.tools.graphs.ToolGraph

removeListener(ToolListener) - Method in interface mgui.interfaces.tools.Tool

removeListener(TreeListener) - Method in class mgui.interfaces.trees.InterfaceTreeNode

removeListener(VariableListener) - Method in class mgui.interfaces.variables.VariableInt

removeListener(DynamicModelEnvironmentListener) - Method in interface mgui.models.dynamic.DynamicModelEnvironment

removeListener(DynamicModelEnvironmentListener) - Method in class mgui.models.environments.SimpleEnvironment

removeListener(DynamicModelListener) - Method in interface mgui.models.dynamic.DynamicModel

removeListener(DynamicModelListener) - Method in class mgui.models.networks.AbstractNetworkModel

removeListener(NetworkListener) - Method in class mgui.models.networks.AbstractNetwork

removeListener(PipelineTaskListener) - Method in class mgui.pipelines.PipelineTask

removeListeners(ArrayList<GraphicMouseListener>) - Method in class mgui.interfaces.InterfaceStatusBarPanel

removeListSelectionListener(ListSelectionListener) - Method in class mgui.interfaces.datasources.DataSourceDialogPanel

removeListSelectionListener(ListSelectionListener) - Method in class mgui.interfaces.datasources.DataSourceListDialogPanel

removeMapListener(MapListener) - Method in class mgui.interfaces.maps.Map

removeMask(String) - Method in class mgui.interfaces.shapes.Volume3DInt

removeMenuItem(JMenuItem) - Method in class mgui.interfaces.menus.InterfaceMenu

removeMenuItem(JMenuItem) - Method in class mgui.interfaces.menus.InterfacePopupMenu

removeMenuItem(JMenuItem, JMenu) - Method in class mgui.interfaces.menus.InterfaceMenu

removeMenuItem(JMenuItem, JMenu) - Method in class mgui.interfaces.menus.InterfacePopupMenu

removeModel(InterfaceAbstractModel) - Method in class mgui.interfaces.InterfaceWorkspace

removeModelListener(ShapeModel3DListener) - Method in class mgui.interfaces.shapes.ShapeModel3D

removeMouseListener(InterfaceMouseListener) - Method in class mgui.interfaces.graphics.InterfaceGraphic

removeMouseListener(InterfaceMouseListener) - Method in interface mgui.interfaces.InterfaceMouseObject

removeMouseObject(GraphicMouseListener) - Method in class mgui.interfaces.graphics.InterfaceGraphic

removeMouseRelayListener(MouseRelayListener) - Method in class mgui.interfaces.plots.InterfacePlot

removeMouseRelayListener(MouseRelayListener) - Method in class mgui.interfaces.plots.sgt.InterfacePlotSgt

removeNameMap(String) - Method in class mgui.interfaces.shapes.InterfaceShape

Removes the name map associated with column key.

removeNameMap(NameMap) - Static method in class mgui.interfaces.InterfaceEnvironment

Removes a name map from the environment.

removeNode(int) - Method in class mgui.geometry.PointSet3D

removeNode(int) - Method in class mgui.morph.sections.MappedPolygon2D

removeNodeByCount(double) - Method in class mgui.morph.sections.MappedPolygon2D

removeNodeByCount(double, double) - Method in class mgui.morph.sections.MappedPolygon2D

Remove a node from A, selected by the criteria that its target has a maximum source count (i.e., multiple source (A) nodes mapped to a single target (B) node), and is attached to a minimal length edge.

removeNodes(Mesh3D, boolean[]) - Static method in class mgui.geometry.mesh.MeshFunctions

Removes all nodes specified in nodes from mesh, and retriangulates the remaining nodes.

removeNodes(Mesh3D, boolean[], NeighbourhoodMesh) - Static method in class mgui.geometry.mesh.MeshFunctions

Removes all nodes specified in nodes from mesh, and retriangulates the remaining nodes.

removeObservableName(int) - Method in interface mgui.models.dynamic.DynamicModelEnvironment

removeObservableName(int) - Method in class mgui.models.environments.SimpleEnvironment

removeObservableName(String) - Method in interface mgui.models.dynamic.DynamicModelEnvironment

removeObservableName(String) - Method in class mgui.models.environments.SimpleEnvironment

removeOverride() - Method in class mgui.interfaces.shapes.ShapeSet2DInt

removeOverride() - Method in class mgui.interfaces.shapes.ShapeSet3DInt

Removes this set's override; all members are rendered according to their own attributes.

removeParameter(String) - Method in class mgui.pipelines.PipelineProcess

removePipeline(InterfacePipeline) - Method in class mgui.interfaces.InterfaceWorkspace

removePipeline(InterfacePipeline) - Method in class mgui.neuro.imaging.camino.CaminoProject

removePlot(InterfacePlot<?>) - Method in class mgui.interfaces.InterfaceWorkspace

removePlot(InterfacePlot<?>) - Method in class mgui.interfaces.plots.InterfacePlotMulti

removePlot(Drawable) - Method in class mgui.interfaces.plots.osp.InterfacePlotOsp

removePostRenderShape(Shape2DInt) - Method in class mgui.interfaces.graphics.InterfaceCanvas3D

removePostRenderShape(Shape2DInt) - Method in class mgui.interfaces.graphics.PostRenderingCanvas3D

removeProcess(String) - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary

removeProject(CaminoProject) - Method in class mgui.interfaces.neuro.imaging.camino.InterfaceCaminoPanel

removePropertyChangeListener(PropertyChangeListener) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D

removePropertyChangeListener(PropertyChangeListener) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay

removePulse(PulseTrainUpdater.CurrentPulse) - Method in class mgui.models.updaters.PulseTrainUpdater

removePulse(PulseTrainUpdater.CurrentPulse) - Method in class mgui.neuro.updaters.PulseTrainUpdater

removeQuery(InterfaceQuery) - Method in class mgui.interfaces.InterfaceWorkspace

removeQueryVertex(QueryShapeVertex) - Method in class mgui.interfaces.shapes.queries.InterfaceShapeQuery

removeRenderer(DefaultTreeCellRenderer) - Method in class mgui.interfaces.trees.InterfaceTreeCellRenderer

removeRow(int) - Method in class mgui.interfaces.shapes.InterfaceShapesPanel.VertexSelectionTableModel

removeSection(int, boolean, boolean) - Method in class mgui.interfaces.shapes.SectionSet3DInt

Remove the section at index section.

removeSectionNode(InterfaceGraphic2D) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer

removeSelected() - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog.YTableModel

removeSelected() - Method in class mgui.interfaces.plots.sgt.SgtScatterPlotDialog.XYTableModel

removeSelectionListener(ShapeSelectionListener) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet

removeSelectionListener(ShapeSelectionListener) - Method in class mgui.interfaces.shapes.ShapeModel3D

removeSelectionSet(ShapeSelectionSet) - Method in class mgui.interfaces.shapes.SectionSet3DInt

removeSelectionSet(ShapeSelectionSet) - Method in class mgui.interfaces.shapes.ShapeModel3D

removeSensor(DynamicModelEnvironmentSensor) - Method in interface mgui.models.dynamic.DynamicModel

removeSensor(DynamicModelEnvironmentSensor) - Method in interface mgui.models.dynamic.DynamicModelEnvironment

removeSensor(DynamicModelEnvironmentSensor) - Method in class mgui.models.environments.SimpleEnvironment

removeSensor(DynamicModelEnvironmentSensor) - Method in class mgui.models.networks.AbstractNetworkModel

removeSet(ShapeSelectionSet) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet

removeShape(int) - Method in class mgui.interfaces.shapes.ShapeSet2DInt

removeShape(InterfaceShape) - Method in class mgui.interfaces.shapes.SectionSet3DInt

removeShape(InterfaceShape) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet

removeShape(InterfaceShape) - Method in interface mgui.interfaces.shapes.ShapeSet

Removes a shape from this set

removeShape(InterfaceShape) - Method in class mgui.interfaces.shapes.ShapeSet2DInt

removeShape(InterfaceShape) - Method in class mgui.interfaces.shapes.ShapeSet3DInt

Removes shape from this shape set and removes it as a parent set and a shape listener.

removeShape(Shape2DInt, boolean, boolean) - Method in class mgui.interfaces.shapes.SectionSet3DInt

removeShape(Shape2DInt, boolean, boolean) - Method in class mgui.interfaces.shapes.ShapeSet2DInt

removeShape(Shape3DInt, boolean, boolean) - Method in class mgui.interfaces.shapes.ShapeSet3DInt

Deprecated.

Remove update arguments

removeShape2D(Shape2DInt, boolean, boolean) - Method in class mgui.interfaces.shapes.ShapeSet3DInt

removeShape2DChild(Shape2DInt) - Method in class mgui.interfaces.shapes.Shape3DInt

removeShape3D(Shape2DInt) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D

removeShapeListener(ShapeListener) - Method in class mgui.interfaces.shapes.InterfaceShape

removeShapeListener(ShapeListener) - Method in class mgui.interfaces.shapes.ShapeModel3D

removeShapeModel(ShapeModel3D) - Method in class mgui.interfaces.InterfaceWorkspace

removeShapeNode(InterfaceShape) - Method in class mgui.interfaces.shapes.trees.Shape2DTreeNode

removeShapeNode(InterfaceShape) - Method in class mgui.interfaces.shapes.trees.Shape3DTreeNode

removeShapeNode(InterfaceShape) - Method in class mgui.interfaces.shapes.trees.ShapeModel3DTreeNode

removeShapeNode(InterfaceShape) - Method in class mgui.interfaces.shapes.trees.ShapeTreeNode

removeSplitPanelListener(SplitPanelListener) - Method in class mgui.interfaces.InterfaceSplitPanel

removeStaticListener(StaticPipelineListener) - Method in class mgui.pipelines.InterfacePipeline

removeStrandedNodes(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions

Removes all nodes from mesh which do not have a corresponding face.

removeStream(OutputStream) - Method in class mgui.io.util.ParallelOutputStream

removeSynapse(Synapse) - Method in class mgui.neuro.components.AbstractDendrite

Remove a synapse along with its connection to this dendrite

removeSynapse(Synapse) - Method in class mgui.neuro.components.compartments.CompartmentalDendrite

removeSynapse(Synapse) - Method in interface mgui.neuro.components.Dendrite

removeTab(String) - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel

removeTabbedDisplayListener(TabbedDisplayListener) - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel

removeTable(DataTable) - Method in class mgui.datasources.DataTableSet

removeTask(VideoTask) - Method in class mgui.interfaces.graphics.video.Video

removeTempShape(Shape2DInt) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D

Remove temporary shape shape from the stack

removeTempShape(BranchGroup) - Method in class mgui.interfaces.shapes.ShapeModel3D

removeTempTables() - Method in class mgui.datasources.DataSource

removeTreeModelListener(TreeModelListener) - Method in class mgui.interfaces.trees.AbstractTreeTableModel

removeTreeNodeListener(TaskTreeNodeListener) - Method in class mgui.interfaces.pipelines.trees.TaskTreeNode

removeUnit(ConnectableNeuron) - Method in class mgui.neuro.networks.AbstractNeuralNet

removeUpdate(DocumentEvent) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel

removeUpdate(DocumentEvent) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel

removeVariable(VariableInt<?>) - Method in class mgui.interfaces.InterfaceWorkspace

removeVertex(int) - Method in class mgui.geometry.Mesh3D

Remove a vertex from this mesh, and any faces including it.

removeVertex(int) - Method in class mgui.geometry.Polygon2D

Removes the vertex at idx

removeVertex(int, boolean) - Method in class mgui.geometry.Mesh3D

Remove a vertex from this mesh.

removeVertexData(String) - Method in class mgui.interfaces.shapes.InterfaceShape

Remove a vertex data column from this shape.

removeVertexData(String) - Method in class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt

removeVertexData(String) - Method in class mgui.interfaces.shapes.neuro.CorticalSurfaceSet3DInt

removeVertexData(String) - Method in class mgui.interfaces.shapes.Shape2DInt

removeVertexData(String) - Method in class mgui.interfaces.shapes.Volume3DInt

removeVertices(TreeSet<Integer>) - Method in class mgui.geometry.Mesh3D

Remove a list of vertices.

removeVideo(Video) - Method in class mgui.interfaces.InterfaceWorkspace

removeView3D(View3D) - Method in class mgui.interfaces.InterfaceWorkspace

removeVolume(String, boolean) - Method in class mgui.interfaces.shapes.VolumeSet3DInt

Removes the first volume having name name from this set.

removeVolume(Volume3DInt, boolean) - Method in class mgui.interfaces.shapes.VolumeSet3DInt

Removes the given volume (actually the first volume having the identical name) from this set.

removeWindow(String) - Method in class mgui.interfaces.InterfaceDisplayPanel

Removes the panel associated with name, if it exists.

removeWindow(InterfaceGraphic2D) - Method in class mgui.interfaces.shapes.ShapeSet3DInt

removeWindow(InterfaceGraphicWindow) - Method in interface mgui.interfaces.graphics.WindowContainer

Remove child from this container, and notify listeners.

removeWindow(InterfaceGraphicWindow) - Method in class mgui.interfaces.InterfaceDisplayPanel

removeWindow(InterfaceGraphicWindow) - Method in class mgui.interfaces.InterfaceSplitPanel

removeWindow(InterfaceGraphicWindow, boolean) - Method in interface mgui.interfaces.graphics.WindowContainer

Remove child from this container.

removeWindow(InterfaceGraphicWindow, boolean) - Method in class mgui.interfaces.InterfaceDisplayPanel

removeWindow(InterfaceGraphicWindow, boolean) - Method in class mgui.interfaces.InterfaceSplitPanel

removeWindowListener(WindowListener) - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow

renameTable(String, String) - Method in class mgui.io.domestic.datasources.ImportDataTableDialogBox

Rename a table to be imported

renameVertexDataColumn(String, String) - Method in class mgui.interfaces.shapes.InterfaceShape

Renames the current column.

renameVertexDataColumn(String, String) - Method in class mgui.interfaces.shapes.Volume3DInt

render(View3d) - Method in class au.edu.unsw.cse.Axes

render(View3d) - Method in class au.edu.unsw.cse.Cube

render the cube, given a 3D view

render(View3d) - Method in class au.edu.unsw.cse.Edge3d

render the edge, given a 3D view

render(View3d) - Method in class au.edu.unsw.cse.Edge3dPlus

render the triangle, given a 3D view

render(View3d) - Method in interface au.edu.unsw.cse.Object3d

render this object3d

render(View3d) - Method in class au.edu.unsw.cse.Object3dAdaptor

render(View3d) - Method in class au.edu.unsw.cse.Object3dList

render(View3d) - Method in class au.edu.unsw.cse.Point3dObject3d

render(View3d) - Method in class au.edu.unsw.cse.Points3d

render(View3d) - Method in class au.edu.unsw.cse.Polygon3d

render the poly, given a 3D view

render(View3d) - Method in class au.edu.unsw.cse.QuadMesh3d

render the Mesh, given a 3D view

render(View3d) - Method in class au.edu.unsw.cse.Site3d

render(View3d) - Method in class au.edu.unsw.cse.Triangle3d

render the triangle, given a 3D view

render(View3d) - Method in class au.edu.unsw.cse.Triangle3dPlus

render the triangle, given a 3D view

render(Graphics2D) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.RenderServer

render(Canvas3D) - Method in class mgui.interfaces.graphics.util.Axes3D

render_mode - Variable in class mgui.interfaces.shapes.volume.Volume3DRenderer

render_node - Variable in class mgui.interfaces.shapes.Volume3DInt

render_vertex - Variable in class mgui.geometry.Polygon2D

renderContext - Variable in class mgui.interfaces.shapes.graphs.Graph3DInt

renderer - Variable in class mgui.interfaces.attributes.AttributeSelectionMap

renderer - Variable in class mgui.interfaces.shapes.Volume3DInt

renderers - Variable in class mgui.interfaces.trees.InterfaceTreeCellRenderer

renderPolygon() - Method in class mgui.interfaces.tools.shapes.ToolSelectNodesWithPolygon

RenderServer(Graph2DLayout<AbstractGraphNode, AbstractGraphEdge>) - Constructor for class mgui.interfaces.shapes.graphs.Graph2DInt.RenderServer

repaint() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer

Overridden for performance reasons.

repaint(long, int, int, int, int) - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer

Overridden for performance reasons.

repaint(Rectangle) - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer

Overridden for performance reasons.

repaintAxes() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D

replace(Attribute<?>) - Method in class mgui.interfaces.attributes.AttributeList

replace(InterfaceGraphicWindow, InterfaceGraphicWindow) - Method in class mgui.interfaces.InterfaceSplitPanel

Replace old with nieuw.

replaceAll(String, String, String) - Static method in class mgui.util.StringFunctions

Replaces all occurrences of find in string and replaces them with replace, without using regex.

replaceSeparators(String) - Method in class mgui.interfaces.projects.ProjectDirectory

Replaces the separators (/ or \) with the file-system-specific separator

reportSuccess(boolean) - Method in class mgui.interfaces.tools.dialogs.DialogTool

RequiredChanged - mgui.datasources.DataFieldEvent.EventCode

requiresRedraw(String) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay

Returns true is an update to the attribute attribute requires the display window to redraw itself.

resample - Variable in class mgui.interfaces.tools.shapes.ToolCreateMeshFromPolylinesOptions

resample - Variable in class mgui.io.domestic.videos.ImageStackVideoOptions

resample(int) - Method in class mgui.geometry.neuro.mesh.SampleRay

resample_n - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions

resampleMesh(Mesh3D, Mesh3D) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions

Resamples the source mesh with the vertices of the resample mesh (typically a sphere).

reset - Variable in class mgui.interfaces.plots.MatrixPlotDataSource

reset - Variable in class mgui.interfaces.plots.PlotXYDataSource

reset() - Method in class mgui.interfaces.graphics.video.Video

Resets the clock and all tasks in this video.

reset() - Method in class mgui.interfaces.graphics.video.VideoTask

Resets this task

reset() - Method in class mgui.interfaces.graphs.layouts.Coordinate3DLayout

reset() - Method in class mgui.interfaces.graphs.layouts.CoordinateLayout

reset() - Method in class mgui.interfaces.gui.AbstractProgressUpdater

reset() - Method in class mgui.interfaces.gui.InterfaceProgressBar

Resets the progress bar with its minimum and maximum values.

reset() - Method in class mgui.interfaces.plots.MatrixPlotDataSource

Resets this data source.

reset() - Method in class mgui.interfaces.plots.PlotXYDataSource

Resets this data source.

reset() - Method in class mgui.interfaces.plots.VariablePlotTimeSeriesDataSource

Resets this data source.

reset() - Method in class mgui.interfaces.plots.VariablePlotXYDataSource

Resets this data source.

reset() - Method in interface mgui.interfaces.ProgressUpdater

reset() - Method in class mgui.interfaces.shapes.graphs.util.Graph2DLayout

reset() - Method in class mgui.interfaces.tools.shapes.util.RulerDialog

reset() - Method in class mgui.io.foreign.vol.CoordAttr

reset() - Method in class mgui.io.foreign.vol.StringAttr

reset() - Method in interface mgui.models.dynamic.DynamicModel

reset() - Method in interface mgui.models.dynamic.DynamicModelComponent

reset() - Method in class mgui.models.dynamic.DynamicModelEngine

reset() - Method in interface mgui.models.dynamic.DynamicModelEnvironment

reset() - Method in interface mgui.models.dynamic.DynamicModelEnvironmentSensor

reset() - Method in interface mgui.models.dynamic.DynamicModelUpdater

reset() - Method in class mgui.models.dynamic.functions.ODEFunction

reset() - Method in class mgui.models.environments.AbstractEnvironmentDataSource

reset() - Method in class mgui.models.environments.SimpleEnvironment

reset() - Method in class mgui.models.networks.AbstractNetwork

reset() - Method in class mgui.models.updaters.LinearUpdater

reset() - Method in class mgui.models.updaters.PulseTrainUpdater

reset() - Method in class mgui.neuro.components.AbstractNeuroComponent

reset() - Method in class mgui.neuro.components.compartments.AbstractCompartment

Reset the compartment's temporary variables

reset() - Method in class mgui.neuro.components.compartments.SimpleCompartment

reset() - Method in class mgui.neuro.components.cortical.AbstractCorticalInput

reset() - Method in class mgui.neuro.components.cortical.functions.BiexponentialFunction

reset() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction

reset() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalConnection

reset() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalOutput

reset() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion

reset() - Static method in class mgui.neuro.imaging.camino.CaminoFunctions

reset() - Method in class mgui.neuro.updaters.PulseTrainUpdater

reset() - Method in class mgui.pipelines.InterfacePipeline

reset() - Method in class mgui.pipelines.PipelineState

reset() - Method in class mgui.pipelines.PipelineTask

Resets this task, and sets its status to NotStarted.

reset(Graphics2D) - Method in class mgui.interfaces.graphics.util.DrawingEngine

resetBuffer() - Method in class mgui.morph.sections.MappedPolygon2DPath

resetCache() - Method in class mgui.interfaces.datasources.DataTableModel

resetCharts() - Method in class mgui.interfaces.plots.osp.InterfaceStripChart

resetClock() - Method in class mgui.neuro.components.AbstractNeuroComponent

resetCursor() - Method in class mgui.datasources.DataRecordSet

resetDataLimits(boolean) - Method in class mgui.interfaces.shapes.VertexDataColumn

resetDefaults() - Static method in class mgui.neuro.imaging.camino.CaminoFunctions

Since Camino was built to be run from the command line, its static CL_Initializer and OutputManager classes are meant to be reinstantiated upon each function call.

resetHistogram() - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel

resetImageComponent() - Method in class mgui.interfaces.shapes.volume.Volume3DTexture

resetInputDataSource() - Method in class mgui.models.environments.SimpleEnvironment

resetInputNames() - Method in class mgui.models.environments.SimpleEnvironment

resetInputState() - Method in class mgui.models.environments.SimpleEnvironment

resetLayout() - Method in class mgui.interfaces.plots.InterfacePlotMulti

resetNodes() - Method in class mgui.geometry.Rect3D

resetNodes() - Method in class mgui.interfaces.shapes.BoolPolygon2DInt

resetNodes() - Method in class mgui.interfaces.shapes.IntPolygon2DInt

resetObservableDataSource() - Method in class mgui.models.environments.SimpleEnvironment

resetObservableState() - Method in class mgui.models.environments.SimpleEnvironment

resetPanels() - Method in class mgui.interfaces.InterfaceDisplayPanel

Removes all panels from this display panel, and removes all mouse listeners registered on them.

resetPanels() - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel

resetPlot() - Method in class mgui.interfaces.plots.sgt.InterfacePlotSgt

Resets the plot's data and redraws it if necessary.

resetRotation() - Method in class mgui.geometry.Rect2D

Resets the rotation vector of this rectangle to its default of (1, 0) - the x-axis.

resetSections() - Method in class mgui.morph.sections.MorphSections3DInt

resetSelectionIndex() - Method in class mgui.interfaces.InterfaceDisplayPanel

resetSolver() - Method in class mgui.neuro.components.compartments.AbstractCompartment

resetTaskInstances() - Method in class mgui.pipelines.InterfacePipeline

resetTexture() - Method in class mgui.interfaces.shapes.volume.Volume3DTexture

resetTreeNode() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet

reshape(int, int, int, int) - Method in class au.edu.unsw.cse.Paint3d

resize(int, int) - Method in class au.edu.unsw.cse.Paint3d

resizeArray() - Method in class mgui.geometry.PointSet2D

resizeString(String, int) - Static method in class mgui.util.StringFunctions

Resizes string to length length, by truncating or padding with spaces.

resizeString(String, int, char) - Static method in class mgui.util.StringFunctions

Resizes string to length length, by truncating or padding.

resort() - Method in class mgui.interfaces.maps.ContinuousColourMap

Resources - Class in mgui.resources

TODO: use this static class to define all core resources

Resources() - Constructor for class mgui.resources.Resources

responded(ShapeListener) - Method in class mgui.interfaces.shapes.util.ShapeEvent

restart() - Method in class mgui.interfaces.graphics.video.Video

Restarts this video by resetting the clock and resuming playback.

restorePreviousState() - Method in class mgui.interfaces.trees.InterfaceTreePanel

Restores the expanded state of nodes as of the last call to setCurrentState().

results - Variable in class mgui.interfaces.queries.InterfaceQuery

resume() - Method in class mgui.interfaces.graphics.video.Video

Resumes playback of this video.

retain_original - Variable in class mgui.interfaces.tools.shapes.ToolCutMeshWithPlaneOptions

rev_axis_x - Variable in class mgui.interfaces.plots.sgt.SgtPlotLayout

rev_axis_y - Variable in class mgui.interfaces.plots.sgt.SgtPlotLayout

revalidate() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer

Overridden for performance reasons.

reverse() - Method in class mgui.geometry.Mesh3D.MeshFace3D

RGB - mgui.io.standard.gifti.GiftiOutputOptions.ColumnFormat

RGB - Static variable in class mgui.datasources.DataTypes

RGB - Static variable in class mgui.util.Colours

rgba - Variable in class mgui.image.util.WindowedColourModel

RGBA - mgui.interfaces.plots.mgui.MatrixImagePlot.ColourType

RGBA - mgui.io.standard.gifti.GiftiOutputOptions.ColumnFormat

RGBA - Static variable in class mgui.datasources.DataTypes

RGBA - Static variable in class mgui.util.Colours

RGBFileLoader - Class in mgui.io.standard.imaging

RGBFileLoader(File) - Constructor for class mgui.io.standard.imaging.RGBFileLoader

right - Variable in class mgui.interfaces.shapes.neuro.CorticalSurfaceSet3DInt

right_contains - Variable in class mgui.interfaces.neuro.CorticalThicknessOptions

Rm - Variable in class mgui.neuro.components.compartments.SimpleCompartment

root - Variable in class mgui.geometry.util.K3DBinaryTree

root - Variable in class mgui.interfaces.trees.AbstractTreeTableModel

root_dir - Variable in class mgui.io.domestic.shapes.xml.InterfaceShapeXMLHandler

root_dir - Variable in class mgui.io.domestic.shapes.xml.ShapeModel3DXMLHandler

root_dir - Variable in class mgui.io.domestic.shapes.xml.ShapeSet3DXMLHandler

root_dir - Static variable in class mgui.neuro.imaging.camino.CaminoFunctions

root_dir - Variable in class mgui.pipelines.PipelineState

root_directory - Variable in class mgui.neuro.imaging.camino.CaminoProject

root_pipeline - Variable in class mgui.pipelines.InterfacePipeline

ROT180 - mgui.geometry.volume.VolumeFunctions.VolumeRotationAngle

ROT270 - mgui.geometry.volume.VolumeFunctions.VolumeRotationAngle

ROT90 - mgui.geometry.volume.VolumeFunctions.VolumeRotationAngle

rotate(double, double, double) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer

rotate(double, Point2D) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer

rotate(int[], int[], int, int) - Static method in class mgui.geometry.volume.VolumeFunctions

rotate(Shape2D, Point2d, double) - Static method in class mgui.geometry.util.GeometryFunctions

Rotates shape about base_point by angle radians.

rotate(Shape2D, Point2f, double) - Static method in class mgui.geometry.util.GeometryFunctions

Rotates shape about base_point by angle radians.

rotate(Shape3D, Point3d, Vector3d, double) - Static method in class mgui.geometry.util.GeometryFunctions

Rotates this shape about a base point base_point and an axis axis by angle radians.

rotate(Shape3D, Point3f, Vector3f, double) - Static method in class mgui.geometry.util.GeometryFunctions

Rotates this shape about a base point base_point and an axis axis by angle radians.

rotateDims(int[], int, int) - Static method in class mgui.geometry.volume.VolumeFunctions

Returns new dimensions for a rotation about a basis axis.

rotateRate - Variable in class mgui.interfaces.tools.graphics.ToolMouseOrbit3D

rotateShapeYPR(Shape3D) - Method in class mgui.interfaces.shapes.util.ShapeEngine

rotateVector(Vector3d, Vector3d, double, double) - Method in class mgui.interfaces.maps.Camera3D

RotateView3DTask - Class in mgui.interfaces.graphics.video

Video task which rotates a Camera3D over a specific time interval, with the rotation defined by an X and a Y angle.

RotateView3DTask() - Constructor for class mgui.interfaces.graphics.video.RotateView3DTask

RotateView3DTask(long, long, double, double) - Constructor for class mgui.interfaces.graphics.video.RotateView3DTask

RotateView3DTaskDialogPanel - Class in mgui.interfaces.graphics.video

Dialog panel for a RotateView3DTask.

RotateView3DTaskDialogPanel() - Constructor for class mgui.interfaces.graphics.video.RotateView3DTaskDialogPanel

RotateView3DTaskDialogPanel(RotateView3DTask) - Constructor for class mgui.interfaces.graphics.video.RotateView3DTaskDialogPanel

rotateX(double) - Method in class mgui.interfaces.maps.Camera3D

rotateY(double) - Method in class mgui.interfaces.maps.Camera3D

rotation - Variable in class mgui.geometry.Rect2D

RowNumberRenderer() - Constructor for class mgui.interfaces.gui.RowNumberTable.RowNumberRenderer

RowNumberTable - Class in mgui.interfaces.gui

RowNumberTable(JTable) - Constructor for class mgui.interfaces.gui.RowNumberTable

RowNumberTable.RowNumberRenderer - Class in mgui.interfaces.gui

RowsAsVectors - mgui.io.domestic.variables.MatrixInOptions.Variable

RulerDialog - Class in mgui.interfaces.tools.shapes.util

Dialog to be displayed when executing a Ruler tool (ToolRuler2D or ToolRuler3D).

RulerDialog(JFrame) - Constructor for class mgui.interfaces.tools.shapes.util.RulerDialog

run() - Method in class au.edu.unsw.cse.AnimationWidget

run() - Method in class au.edu.unsw.cse.AnimationWidgetVRML

run() - Method in class au.edu.unsw.cse.Paint3d

run() - Method in interface au.edu.unsw.cse.Painter

run() - Method in class au.edu.unsw.cse.PaintVRML

run() - Method in class mgui.pipelines.PipelineJob

run() - Method in class mgui.pipelines.PipelineState.ErrorStreamListener

run(String[], long) - Method in class mgui.pipelines.JavaProcess

run(String[], long) - Method in class mgui.pipelines.NativeProcess

run(String[], long) - Method in class mgui.pipelines.PipelineProcess

Runs an instance of this process

run_command(String) - Method in class mgui.command.CommandInstance

Runs a single command with the current parameters.

run_command(String) - Method in class mgui.datasources.util.DataSourceCommands

Running - mgui.command.CommandFunctions.ProcessState

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