T-Index

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T

T - mgui.geometry.volume.VolumeFunctions.VolumeAxis
T - mgui.interfaces.plots.sgt.SgtPlotFunctions.AxisType
t_size - Variable in class mgui.geometry.Grid3D
t_unit_code - Variable in class mgui.io.standard.nifti.Nifti1Dataset
t1_volume - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
TabAdded - mgui.interfaces.TabbedDisplayEvent.EventType
tabbedDisplayChanged(TabbedDisplayEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphicPanel
tabbedDisplayChanged(TabbedDisplayEvent) - Method in class mgui.interfaces.InterfaceWorkspace: Fires a TabbedDisplayEvent for each loaded graphics window
tabbedDisplayChanged(TabbedDisplayEvent) - Method in class mgui.interfaces.shapes.InterfaceSectionSetPanel
tabbedDisplayChanged(TabbedDisplayEvent) - Method in interface mgui.interfaces.TabbedDisplayListener
TabbedDisplayEvent - Class in mgui.interfaces
TabbedDisplayEvent(InterfaceTabbedDisplayPanel, TabbedDisplayEvent.EventType) - Constructor for class mgui.interfaces.TabbedDisplayEvent
TabbedDisplayEvent.EventType - Enum in mgui.interfaces
TabbedDisplayListener - Interface in mgui.interfaces
TabChanged - mgui.interfaces.TabbedDisplayEvent.EventType
table - Variable in class mgui.interfaces.datasources.DataTableOptions
table - Variable in class mgui.interfaces.tables.InterfaceDataTable
table - Variable in class mgui.io.domestic.maps.NameMapOutDialogBox
table - Variable in class mgui.io.domestic.shapes.PointSet3DDataInputDialogBox
table - Variable in class mgui.io.domestic.shapes.ShapeInputDialogBox
table - Variable in class mgui.io.domestic.shapes.SurfaceDataInputDialogBox
table - Variable in class mgui.io.domestic.shapes.SurfaceDataOutputDialogBox
table - Variable in class mgui.io.domestic.shapes.SurfaceInputDialogBox
table_map - Variable in class mgui.datasources.DataTableSet
table_model - Variable in class mgui.interfaces.tables.InterfaceDataTable
table_offset - Variable in class mgui.io.domestic.shapes.ShapeInputDialogBox
table_offset - Variable in class mgui.io.domestic.shapes.SurfaceInputDialogBox
table_pos - Variable in class mgui.io.domestic.shapes.PointSet3DDataInputDialogBox
table_pos - Variable in class mgui.io.domestic.shapes.SurfaceDataInputDialogBox
table_set - Variable in class mgui.io.domestic.datasources.DataSourceXMLHandler
TableMap - mgui.io.standard.xml.svg.SVGInputOptions.SVGMap
TableModel() - Constructor for class mgui.io.domestic.shapes.ShapeModel3DOutputDialog.TableModel
TableModel(ArrayList<ArrayList<String>>, ArrayList<String>) - Constructor for class mgui.io.domestic.variables.MatrixInDialogBox.TableModel
TableModel(Vector<Vector<Object>>, Vector<String>) - Constructor for class mgui.io.domestic.shapes.SurfaceDataOutputDialogBox.TableModel
TableModel(Vector<Vector>, Vector<String>) - Constructor for class mgui.io.domestic.maps.NameMapOutDialogBox.TableModel
TableModel(Vector<Vector>, Vector<String>) - Constructor for class mgui.io.domestic.shapes.PointSet2DInputDialogBox.TableModel
TableModel(Vector<Vector>, Vector<String>) - Constructor for class mgui.io.domestic.shapes.PointSet3DInputDialogBox.TableModel
TableModel(Vector<Vector>, Vector<String>) - Constructor for class mgui.io.domestic.shapes.PolygonSet3DInputDialogBox.TableModel
TableModel(Vector<Vector>, Vector<String>) - Constructor for class mgui.io.domestic.shapes.ShapeInputDialogBox.TableModel
TableModel(Vector<Vector>, Vector<String>) - Constructor for class mgui.io.domestic.shapes.SurfaceInputDialogBox.TableModel
TableModel(Vector<Vector>, Vector<String>) - Constructor for class mgui.io.domestic.shapes.VectorSet3DInputDialogBox.TableModel
TableModel(Vector<Vector>, Vector<String>, int) - Constructor for class mgui.io.domestic.shapes.PointSet3DDataInputDialogBox.TableModel
TableModel(Vector<Vector>, Vector<String>, int) - Constructor for class mgui.io.domestic.shapes.SurfaceDataInputDialogBox.TableModel
TableModel(ShapeModel3D) - Constructor for class mgui.io.domestic.shapes.ShapeModel3DOutputDialog.TableModel
TableModel(ShapeModel3DOutputOptions) - Constructor for class mgui.io.domestic.shapes.ShapeModel3DOutputDialog.TableModel
tableSet - Variable in class mgui.datasources.DataSource
TabRemoved - mgui.interfaces.TabbedDisplayEvent.EventType
tabs - Variable in class mgui.interfaces.InterfaceOptionsTabbedDialogBox
tabs - Variable in class mgui.interfaces.InterfaceTabbedDialogBox
tagBoundaryNodes(ArrayList<MguiBoolean>, NeighbourhoodMesh) - Static method in class mgui.geometry.mesh.MeshDecimation: Tag all boundary nodes.
target_panel - Variable in class mgui.interfaces.tools.graphs.ToolGraph
target_set - Variable in class mgui.interfaces.tools.shapes.ToolCreateMeshFromPolylinesOptions
target_set - Variable in class mgui.interfaces.tools.shapes.ToolCutMeshWithPlaneOptions
target_set - Variable in class mgui.interfaces.tools.shapes.ToolGetMeshIntersectionPolylinesOptions
TargetChanged - mgui.interfaces.events.CameraEvent.EventType
targetPanel - Variable in class mgui.interfaces.InterfaceButtonPanel
targetPanel - Variable in class mgui.interfaces.tools.graphics.Tool2D
targetPanel - Variable in class mgui.interfaces.tools.graphics.Tool3D
targetPt - Variable in class mgui.interfaces.maps.Camera3D
targetShape - Variable in class mgui.interfaces.tools.graphics.Tool2D
targetShape - Variable in class mgui.interfaces.tools.graphics.Tool3D
targetTransform - Variable in class mgui.interfaces.maps.Map3D
task - Variable in class mgui.interfaces.graphics.video.VideoTaskOptions
task - Variable in class mgui.interfaces.neuro.imaging.camino.CaminoTaskOptions
task - Variable in class mgui.io.domestic.pipelines.TaskXMLHandler
Task - mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree.PopupObject
Task - mgui.interfaces.pipelines.trees.PipelineTree.PopupObject
Task - mgui.interfaces.pipelines.trees.PipelineTreeTransferHandler.TransferType
task_class - Variable in class mgui.interfaces.graphics.video.VideoTaskType
task_flavor - Static variable in class mgui.interfaces.pipelines.trees.PipelineTreeTransferHandler
task_index - Variable in class mgui.pipelines.StaticPipelineEvent
TaskAppended - mgui.pipelines.StaticPipelineEvent.EventType
TaskInserted - mgui.pipelines.StaticPipelineEvent.EventType
taskInterrupted - Variable in class mgui.pipelines.PipelineState
TaskModified - mgui.pipelines.StaticPipelineEvent.EventType
TaskParameter - Class in mgui.pipelines: Specifies a parameter for a given PipelineProcess.
TaskParameter() - Constructor for class mgui.pipelines.TaskParameter
TaskParameter(String) - Constructor for class mgui.pipelines.TaskParameter
TaskParameter(String, String, boolean) - Constructor for class mgui.pipelines.TaskParameter
TaskParameter(String, String, boolean, boolean, boolean) - Constructor for class mgui.pipelines.TaskParameter
TaskParameter(TaskParameter) - Constructor for class mgui.pipelines.TaskParameter
TaskParameterInstance - Class in mgui.pipelines: An instance of a task parameter.
TaskParameterInstance(TaskParameter) - Constructor for class mgui.pipelines.TaskParameterInstance
TaskRemoved - mgui.pipelines.StaticPipelineEvent.EventType
TaskRenamed - mgui.pipelines.StaticPipelineEvent.EventType
tasks - Variable in class mgui.interfaces.graphics.video.Video
tasks - Variable in class mgui.pipelines.InterfacePipeline
taskStatusChanged(PipelineTaskEvent) - Method in class mgui.interfaces.pipelines.trees.TaskTreeNode
taskStatusChanged(PipelineTaskEvent) - Method in class mgui.pipelines.InterfacePipeline
taskStatusChanged(PipelineTaskEvent) - Method in interface mgui.pipelines.PipelineTaskListener
TaskTreeNode - Class in mgui.interfaces.pipelines.trees: Tree node for a pipeline task.
TaskTreeNode(PipelineTask) - Constructor for class mgui.interfaces.pipelines.trees.TaskTreeNode
TaskTreeNode(PipelineTask, PipelineTree) - Constructor for class mgui.interfaces.pipelines.trees.TaskTreeNode
TaskTreeNodeEvent - Class in mgui.interfaces.pipelines.trees
TaskTreeNodeEvent(DefaultMutableTreeNode) - Constructor for class mgui.interfaces.pipelines.trees.TaskTreeNodeEvent
TaskTreeNodeListener - Interface in mgui.interfaces.pipelines.trees
TaskXMLHandler - Class in mgui.io.domestic.pipelines: Handles XML for a PipelineProcessInstance.
TaskXMLHandler() - Constructor for class mgui.io.domestic.pipelines.TaskXMLHandler
tAxis - Variable in class mgui.geometry.Box3D
tDim - Variable in class mgui.interfaces.shapes.volume.Volume3DTexture
TDIM - Variable in class mgui.io.standard.nifti.Nifti1Dataset
temp_count - Static variable in class mgui.neuro.imaging.camino.CaminoFunctions
temp_count - Variable in class mgui.pipelines.PipelineState
temp_input - Static variable in class mgui.neuro.imaging.camino.CaminoFunctions
temp_input - Variable in class mgui.pipelines.PipelineState
temp_output - Static variable in class mgui.neuro.imaging.camino.CaminoFunctions
temp_output - Variable in class mgui.pipelines.PipelineState
temp_popup_shape - Variable in class mgui.interfaces.graphics.InterfaceGraphic3D
temp_shapes - Variable in class mgui.interfaces.graphics.InterfaceGraphic2D
temp_shapes - Variable in class mgui.interfaces.shapes.ShapeModel3D
temp_tables - Variable in class mgui.datasources.DataSource
TempBitmapDrawer - Class in mgui.interfaces.io.temp
TempBitmapDrawer() - Constructor for class mgui.interfaces.io.temp.TempBitmapDrawer
TempBitmapDrawer(int) - Constructor for class mgui.interfaces.io.temp.TempBitmapDrawer
tempBounds - Variable in class mgui.interfaces.graphics.InterfaceGraphic3D
template_rays - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
TensorVolume3DInt - Class in mgui.interfaces.shapes
TensorVolume3DInt() - Constructor for class mgui.interfaces.shapes.TensorVolume3DInt
TensorVolume3DInt(Grid3D, ColourMap) - Constructor for class mgui.interfaces.shapes.TensorVolume3DInt
terminate() - Static method in class mgui.interfaces.InterfaceSession: Terminates this ModelGUI session and exits the JVM.
terminate_on_failure - Variable in class mgui.pipelines.InterfacePipeline
TerminatedNormally - mgui.command.CommandFunctions.ProcessState
TerminatedWithError - mgui.command.CommandFunctions.ProcessState
test(Updateable, double) - Method in class mgui.models.updaters.SimpleEnvironmentUpdater
testSet - Variable in class mgui.neuro.stats.SimpleStatistics
TestTexture - Class in mgui.interfaces.shapes.util
TestTexture() - Constructor for class mgui.interfaces.shapes.util.TestTexture
TestTextureInt - Class in mgui.interfaces.shapes
TestTextureInt() - Constructor for class mgui.interfaces.shapes.TestTextureInt
TestTextureInt(Rect3D, BufferedImage, int) - Constructor for class mgui.interfaces.shapes.TestTextureInt
TestTextureInt(Rect3D, BufferedImage, int, boolean) - Constructor for class mgui.interfaces.shapes.TestTextureInt
texgen2D - Variable in class mgui.interfaces.shapes.util.TestTexture
texgen3D - Variable in class mgui.interfaces.shapes.util.TestTexture
text - Variable in class au.edu.unsw.cse.AnimationWidget
Text2D - Class in mgui.geometry: Represents a character string with 2D geometry.
Text2D() - Constructor for class mgui.geometry.Text2D
Text2D(String, Rect2D) - Constructor for class mgui.geometry.Text2D
Text2D(String, Point2f, Point2f) - Constructor for class mgui.geometry.Text2D
Text2DInt - Class in mgui.interfaces.shapes
Text2DInt() - Constructor for class mgui.interfaces.shapes.Text2DInt
Text2DInt(String, float, float) - Constructor for class mgui.interfaces.shapes.Text2DInt
Text2DInt(String, Rect2D) - Constructor for class mgui.interfaces.shapes.Text2DInt
Text2DInt(String, Point2f, Point2f) - Constructor for class mgui.interfaces.shapes.Text2DInt
Text2DInt(Text2D) - Constructor for class mgui.interfaces.shapes.Text2DInt
Text2DIntMouseCoords - Class in mgui.interfaces.shapes
Text2DIntMouseCoords() - Constructor for class mgui.interfaces.shapes.Text2DIntMouseCoords
Text2DIntMouseCoords(Text2D) - Constructor for class mgui.interfaces.shapes.Text2DIntMouseCoords
textNonSelectionColor - Variable in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer: Color to use for the foreground for non-selected nodes.
textSelectionColor - Variable in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer: Color to use for the foreground for selected nodes.
textStr - Variable in class mgui.geometry.Text2D
texture - Variable in class mgui.interfaces.shapes.util.Image3DTexture
texture - Variable in class mgui.interfaces.shapes.volume.Volume3DTexture
texture_type - Variable in class mgui.io.domestic.shapes.VolumeInputOptions
texture2D - Variable in class mgui.interfaces.shapes.util.TestTexture
texture3D - Variable in class mgui.interfaces.shapes.util.TestTexture
texture3D - Variable in class mgui.interfaces.shapes.volume.Volume3DRenderer
Texture3DTest - Class in mgui.interfaces.shapes.util
Texture3DTest() - Constructor for class mgui.interfaces.shapes.util.Texture3DTest
TextureModified - mgui.interfaces.shapes.util.ShapeEvent.EventType
textureSet - Variable in class mgui.interfaces.shapes.Volume3DInt
theCamera - Variable in class mgui.interfaces.tools.graphics.ToolMouseOrbit3D
theMap - Variable in class mgui.interfaces.graphics.InterfaceGraphic
theMap - Variable in class mgui.interfaces.graphics.InterfaceGraphic2DTextBox
theMap - Variable in class mgui.interfaces.graphics.InterfaceGraphicTextBox
theMap - Variable in class mgui.interfaces.tools.ToolBehavior3DAdapter
theta() - Method in class au.edu.unsw.cse.Point3d
thisBounds - Variable in class mgui.interfaces.maps.Map3D
thisMode - Variable in class mgui.io.standard.xml.svg.SVGFileInterface
thisNode - Variable in class mgui.morph.sections.NodeMap2D
thisPanel - Variable in class mgui.interfaces.InterfaceHideablePanel
thisParent - Variable in class mgui.interfaces.shapes.selection.InterfaceSelectionSet
thisPoly - Variable in class mgui.interfaces.tools.shapes.ToolCreatePolygon2D
thisRef - Variable in class mgui.interfaces.shapes.Text2DIntMouseCoords
thisShape - Variable in class mgui.interfaces.shapes.Shape2DInt
thisTitle - Variable in class mgui.interfaces.InterfaceHideablePanel
thisTool - Variable in class mgui.interfaces.InterfaceButton
thisView - Variable in class mgui.interfaces.maps.Map3D
THRESHOLD - Static variable in class au.edu.unsw.cse.Viewer
threshold_stdev - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
TimedTest - Class in mgui.neuro.imaging.camino.tasks: Test process; simply waits for a specified delay
TimedTest() - Constructor for class mgui.neuro.imaging.camino.tasks.TimedTest
timeElapsed(double) - Method in interface mgui.models.dynamic.TimeStepListener
timeElapsed(double) - Method in class mgui.models.environments.SimpleEnvironment
timeElapsed(double) - Method in class mgui.models.events.SimpleEvent
timeElapsed(double) - Method in class mgui.neuro.components.AbstractNeuroComponent
timeElapsed(double) - Method in class mgui.neuro.components.compartments.AbstractCompartment
timeElapsed(double) - Method in class mgui.neuro.components.compartments.CompartmentalComponent
timeElapsed(double) - Method in class mgui.neuro.components.simple.SimpleEvent
TimeFunctions - Class in mgui.util
TimeFunctions() - Constructor for class mgui.util.TimeFunctions
Timer - Class in au.edu.unsw.cse
Timer(String) - Constructor for class au.edu.unsw.cse.Timer
TimeSeriesPlot<T extends MguiNumber> - Interface in mgui.interfaces.plots: Interface for an X-Y plot with multiple Y variables.
TIMESLICE - Static variable in class au.edu.unsw.cse.Viewer
TIMESTAMP - Static variable in class mgui.datasources.DataTypes
timeStep - Variable in class mgui.models.dynamic.DynamicModelEngine
TimeStepListener - Interface in mgui.models.dynamic: Interface for dynamic components to implement to receive time-step events from the DynamicModelEngine
TinySQLDialogPanel - Class in mgui.interfaces.datasources.tinysql: Dialog panel for a TinySQL data source.
TinySQLDialogPanel() - Constructor for class mgui.interfaces.datasources.tinysql.TinySQLDialogPanel
TinySQLDialogPanel(DataSourceDriver) - Constructor for class mgui.interfaces.datasources.tinysql.TinySQLDialogPanel
TinySQLDriver - Class in mgui.datasources.tinysql: Specifies the driver for TinySQL connectivity.
TinySQLDriver() - Constructor for class mgui.datasources.tinysql.TinySQLDriver
TinySQLDriver(String, String) - Constructor for class mgui.datasources.tinysql.TinySQLDriver
tip - Variable in class au.edu.unsw.cse.ColorControl
title_button - Variable in class mgui.interfaces.graphics.InterfaceGraphicWindow
title_height - Variable in class mgui.interfaces.plots.sgt.SgtPlotLayoutOptions: Height of main title in physical units
title_panel - Variable in class mgui.interfaces.graphics.InterfaceGraphic
titles - Variable in class mgui.interfaces.InterfaceDisplayPanel
titles - Variable in class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog.YTableModel
titles - Variable in class mgui.interfaces.plots.sgt.SgtScatterPlotDialog.XYTableModel
to - Variable in class mgui.interfaces.graphs.AbstractGraphEdge
toBytes(Colour, byte[]) - Static method in class mgui.util.Colours
ToConsole - mgui.interfaces.logs.LoggingTarget
toffset - Variable in class mgui.io.standard.nifti.Nifti1Dataset
toFile(File) - Method in class mgui.stats.Histogram
ToFile - mgui.interfaces.logs.LoggingTarget
ToFileAndConsole - mgui.interfaces.logs.LoggingTarget
toggleExpandedWindow(String) - Method in class mgui.interfaces.InterfaceDisplayPanel: Toggles the expansion state of the window specified by name.
tolerance - Static variable in class mgui.geometry.mesh.MeshFunctions
tolerance - Static variable in class mgui.interfaces.shapes.util.ShapeFunctions
Tool - Interface in mgui.interfaces.tools: Interface for any class which performs an operation or set of operations on ModelGUI objects, which involves user interaction.
TOOL_IMMEDIATE - Static variable in class mgui.interfaces.tools.ToolBehavior3DAdapter
TOOL_IMMEDIATE - Static variable in class mgui.interfaces.tools.ToolConstants
TOOL_KEY_PRESSED - Static variable in class mgui.interfaces.tools.ToolConstants
TOOL_KEY_RELEASED - Static variable in class mgui.interfaces.tools.ToolConstants
TOOL_KEY_TYPED - Static variable in class mgui.interfaces.tools.ToolConstants
TOOL_MOUSE_CLICKED - Static variable in class mgui.interfaces.tools.ToolBehavior3DAdapter
TOOL_MOUSE_CLICKED - Static variable in class mgui.interfaces.tools.ToolConstants
TOOL_MOUSE_DCLICKED - Static variable in class mgui.interfaces.tools.ToolBehavior3DAdapter
TOOL_MOUSE_DCLICKED - Static variable in class mgui.interfaces.tools.ToolConstants
TOOL_MOUSE_DOWN - Static variable in class mgui.interfaces.tools.ToolBehavior3DAdapter
TOOL_MOUSE_DOWN - Static variable in class mgui.interfaces.tools.ToolConstants
TOOL_MOUSE_DRAGGED - Static variable in class mgui.interfaces.tools.ToolBehavior3DAdapter
TOOL_MOUSE_DRAGGED - Static variable in class mgui.interfaces.tools.ToolConstants
TOOL_MOUSE_MCLICKED - Static variable in class mgui.interfaces.tools.ToolConstants
TOOL_MOUSE_MDRAGGED - Static variable in class mgui.interfaces.tools.ToolBehavior3DAdapter
TOOL_MOUSE_MDRAGGED - Static variable in class mgui.interfaces.tools.ToolConstants
TOOL_MOUSE_MOVED - Static variable in class mgui.interfaces.tools.ToolBehavior3DAdapter
TOOL_MOUSE_MOVED - Static variable in class mgui.interfaces.tools.ToolConstants
TOOL_MOUSE_RCLICKED - Static variable in class mgui.interfaces.tools.ToolBehavior3DAdapter
TOOL_MOUSE_RCLICKED - Static variable in class mgui.interfaces.tools.ToolConstants
TOOL_MOUSE_RDRAGGED - Static variable in class mgui.interfaces.tools.ToolBehavior3DAdapter
TOOL_MOUSE_RDRAGGED - Static variable in class mgui.interfaces.tools.ToolConstants
TOOL_MOUSE_UP - Static variable in class mgui.interfaces.tools.ToolBehavior3DAdapter
TOOL_MOUSE_UP - Static variable in class mgui.interfaces.tools.ToolConstants
TOOL_MOUSE_WHEEL - Static variable in class mgui.interfaces.tools.ToolBehavior3DAdapter
TOOL_MOUSE_WHEEL - Static variable in class mgui.interfaces.tools.ToolConstants
Tool2D - Class in mgui.interfaces.tools.graphics: Abstract class for a Tool which operates on an InterfaceGraphic2D window.
Tool2D() - Constructor for class mgui.interfaces.tools.graphics.Tool2D
Tool3D - Class in mgui.interfaces.tools.graphics: Abstract class for a tool to be used on an InterfaceGraphic3D window.
Tool3D() - Constructor for class mgui.interfaces.tools.graphics.Tool3D
Toolable<T extends Tool> - Interface in mgui.interfaces.tools: Interface for objects which can be operated on by a specific class of tools.
ToolActivated - mgui.interfaces.tools.ToolEvent.EventType
ToolBehavior3DAdapter - Class in mgui.interfaces.tools: Adapter to act as bridge between AWT Behaviors and the Tools that respond to them.
ToolBehavior3DAdapter(Canvas3D, Map3D) - Constructor for class mgui.interfaces.tools.ToolBehavior3DAdapter
ToolConstants - Class in mgui.interfaces.tools
ToolConstants() - Constructor for class mgui.interfaces.tools.ToolConstants
ToolCreateEllipse2D - Class in mgui.interfaces.tools.shapes
ToolCreateEllipse2D() - Constructor for class mgui.interfaces.tools.shapes.ToolCreateEllipse2D
ToolCreateImage2D - Class in mgui.interfaces.tools.shapes: Tool allows user to select a file or url pointing to an image, and specify rectangular bounds for that image in model space.
ToolCreateImage2D() - Constructor for class mgui.interfaces.tools.shapes.ToolCreateImage2D
ToolCreateImage3D - Class in mgui.interfaces.tools.shapes: Tool to create a 3D image on a 2D window.
ToolCreateImage3D() - Constructor for class mgui.interfaces.tools.shapes.ToolCreateImage3D
ToolCreateMeshFromPolylines - Class in mgui.interfaces.tools.shapes
ToolCreateMeshFromPolylines() - Constructor for class mgui.interfaces.tools.shapes.ToolCreateMeshFromPolylines
ToolCreateMeshFromPolylinesDialog - Class in mgui.interfaces.tools.shapes
ToolCreateMeshFromPolylinesDialog(JFrame, InterfaceOptions) - Constructor for class mgui.interfaces.tools.shapes.ToolCreateMeshFromPolylinesDialog
ToolCreateMeshFromPolylinesOptions - Class in mgui.interfaces.tools.shapes
ToolCreateMeshFromPolylinesOptions() - Constructor for class mgui.interfaces.tools.shapes.ToolCreateMeshFromPolylinesOptions
ToolCreatePolygon2D - Class in mgui.interfaces.tools.shapes: Allows the user to creates a Polygon2D shape.
ToolCreatePolygon2D() - Constructor for class mgui.interfaces.tools.shapes.ToolCreatePolygon2D
ToolCreatePolygon2D(boolean) - Constructor for class mgui.interfaces.tools.shapes.ToolCreatePolygon2D
ToolCreateRect2D - Class in mgui.interfaces.tools.shapes
ToolCreateRect2D() - Constructor for class mgui.interfaces.tools.shapes.ToolCreateRect2D
ToolCutMeshWithPlane - Class in mgui.interfaces.tools.shapes: Tool to cut a mesh into parts by intersecting it with a Plane3D object.
ToolCutMeshWithPlane() - Constructor for class mgui.interfaces.tools.shapes.ToolCutMeshWithPlane
ToolCutMeshWithPlaneDialog - Class in mgui.interfaces.tools.shapes
ToolCutMeshWithPlaneDialog(JFrame, InterfaceOptions) - Constructor for class mgui.interfaces.tools.shapes.ToolCutMeshWithPlaneDialog
ToolCutMeshWithPlaneOptions - Class in mgui.interfaces.tools.shapes
ToolCutMeshWithPlaneOptions() - Constructor for class mgui.interfaces.tools.shapes.ToolCutMeshWithPlaneOptions
ToolDataSource - Class in mgui.interfaces.tools.datasources: Tool operating on DataSourcePanel windows.
ToolDataSource() - Constructor for class mgui.interfaces.tools.datasources.ToolDataSource
toolDeactivated(ToolEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphic
toolDeactivated(ToolEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
toolDeactivated(ToolEvent) - Method in class mgui.interfaces.InterfaceSelectionPanel
toolDeactivated(ToolEvent) - Method in class mgui.interfaces.queries.InterfaceQueryPanel
toolDeactivated(ToolEvent) - Method in interface mgui.interfaces.tools.ToolListener
ToolDeactivated - mgui.interfaces.tools.ToolEvent.EventType
ToolDefine3DGrid2D - Class in mgui.interfaces.tools.graphics: Tool to define a 3D grid on a 2D window.
ToolDefine3DGrid2D(InterfaceVolumePanel) - Constructor for class mgui.interfaces.tools.graphics.ToolDefine3DGrid2D
ToolDestroyed - mgui.interfaces.tools.ToolEvent.EventType
ToolDZoom2D - Class in mgui.interfaces.tools.graphics
ToolDZoom2D() - Constructor for class mgui.interfaces.tools.graphics.ToolDZoom2D
ToolEvent - Class in mgui.interfaces.tools: An event on a Tool object
ToolEvent(Tool) - Constructor for class mgui.interfaces.tools.ToolEvent
ToolEvent(Tool, ToolEvent.EventType) - Constructor for class mgui.interfaces.tools.ToolEvent
ToolEvent.EventType - Enum in mgui.interfaces.tools
ToolGetConvexHull2D - Class in mgui.interfaces.tools.shapes
ToolGetConvexHull2D() - Constructor for class mgui.interfaces.tools.shapes.ToolGetConvexHull2D
ToolGetConvexHull2DDialog - Class in mgui.interfaces.tools.shapes
ToolGetConvexHull2DDialog(JFrame, InterfaceOptions) - Constructor for class mgui.interfaces.tools.shapes.ToolGetConvexHull2DDialog
ToolGetConvexHull2DOptions - Class in mgui.interfaces.tools.shapes
ToolGetConvexHull2DOptions() - Constructor for class mgui.interfaces.tools.shapes.ToolGetConvexHull2DOptions
ToolGetMeshIntersectionPolylines - Class in mgui.interfaces.tools.shapes
ToolGetMeshIntersectionPolylines() - Constructor for class mgui.interfaces.tools.shapes.ToolGetMeshIntersectionPolylines
ToolGetMeshIntersectionPolylinesDialog - Class in mgui.interfaces.tools.shapes
ToolGetMeshIntersectionPolylinesDialog(JFrame, InterfaceOptions) - Constructor for class mgui.interfaces.tools.shapes.ToolGetMeshIntersectionPolylinesDialog
ToolGetMeshIntersectionPolylinesOptions - Class in mgui.interfaces.tools.shapes
ToolGetMeshIntersectionPolylinesOptions() - Constructor for class mgui.interfaces.tools.shapes.ToolGetMeshIntersectionPolylinesOptions
ToolGraph - Class in mgui.interfaces.tools.graphs: Abstract class to be inherited by tools which operate on graphs; i.e, through InterfaceGraphDisplay.
ToolGraph() - Constructor for class mgui.interfaces.tools.graphs.ToolGraph
ToolGraphAdapter - Class in mgui.interfaces.tools.graphs
ToolGraphAdapter() - Constructor for class mgui.interfaces.tools.graphs.ToolGraphAdapter
ToolGraphImage - Class in mgui.interfaces.tools.graphs: Tool which inserts or appends an image to a graph window.
ToolGraphImage() - Constructor for class mgui.interfaces.tools.graphs.ToolGraphImage
ToolGraphImage(ToolGraphImage.Type) - Constructor for class mgui.interfaces.tools.graphs.ToolGraphImage
ToolGraphImage.Type - Enum in mgui.interfaces.tools.graphs
ToolGraphTransform - Class in mgui.interfaces.tools.graphs: Acts as a bridge between the mgui Tool interface and Jung's view control mouse plugins.
ToolGraphTransform() - Constructor for class mgui.interfaces.tools.graphs.ToolGraphTransform
toolInput3DAdapter - Variable in class mgui.interfaces.graphics.InterfaceGraphic3D
toolInputAdapter - Variable in class mgui.interfaces.graphics.InterfaceGraphic
ToolInputAdapter - Class in mgui.interfaces.tools: Abstract class providing a listener interface for all Tool input events.
ToolInputAdapter() - Constructor for class mgui.interfaces.tools.ToolInputAdapter
ToolInputEvent - Class in mgui.interfaces.tools: Event signifying that input has been detected and must be handled by a Tool object.
ToolInputEvent(Object) - Constructor for class mgui.interfaces.tools.ToolInputEvent
ToolInputEvent(InterfacePanel) - Constructor for class mgui.interfaces.tools.ToolInputEvent
ToolInputEvent(InterfacePanel, int, int) - Constructor for class mgui.interfaces.tools.ToolInputEvent
ToolInputEvent(InterfacePanel, int, Point) - Constructor for class mgui.interfaces.tools.ToolInputEvent
ToolInputEvent(InterfacePanel, int, Point, boolean, boolean) - Constructor for class mgui.interfaces.tools.ToolInputEvent
ToolInputEvent(Canvas3D, int, Point) - Constructor for class mgui.interfaces.tools.ToolInputEvent
ToolInputListener - Interface in mgui.interfaces.tools: Interface for objects which respond to ToolInputEvents.
ToolInputMouseAdapter - Class in mgui.interfaces.tools: Extends ToolInputAdapter to respond specifically to mouse events.
ToolInputMouseAdapter() - Constructor for class mgui.interfaces.tools.ToolInputMouseAdapter
ToolLayout2D - Class in mgui.interfaces.tools.layouts: Tool operating on a InterfaceLayoutObject.
ToolLayout2D() - Constructor for class mgui.interfaces.tools.layouts.ToolLayout2D
ToolListener - Interface in mgui.interfaces.tools
toolLock - Variable in class mgui.interfaces.graphs.InterfaceGraphDisplay
toolLock - Variable in class mgui.interfaces.InterfaceDisplayPanel
ToolMouseAdapter - Class in mgui.interfaces.tools
ToolMouseAdapter() - Constructor for class mgui.interfaces.tools.ToolMouseAdapter
ToolMouseEvent - Class in mgui.interfaces.tools
ToolMouseEvent(MouseEvent, int) - Constructor for class mgui.interfaces.tools.ToolMouseEvent
ToolMouseEvent(InterfacePanel) - Constructor for class mgui.interfaces.tools.ToolMouseEvent
ToolMouseEvent(InterfacePanel, int, Point) - Constructor for class mgui.interfaces.tools.ToolMouseEvent
ToolMouseOrbit3D - Class in mgui.interfaces.tools.graphics: Tool to allow user to navigate a Graphic3D interface using the mouse.
ToolMouseOrbit3D() - Constructor for class mgui.interfaces.tools.graphics.ToolMouseOrbit3D
ToolMouseOrbit3D(InterfaceGraphic3D) - Constructor for class mgui.interfaces.tools.graphics.ToolMouseOrbit3D
ToolPan2D - Class in mgui.interfaces.tools.graphics
ToolPan2D() - Constructor for class mgui.interfaces.tools.graphics.ToolPan2D
toolPhase - Variable in class mgui.interfaces.tools.graphics.Tool2D
toolPhase - Variable in class mgui.interfaces.tools.graphics.Tool3D
ToolPlot - Class in mgui.interfaces.tools.plots
ToolPlot() - Constructor for class mgui.interfaces.tools.plots.ToolPlot
ToolQueryShape2D - Class in mgui.interfaces.tools.shapes: Tool allowing point-and-click vertex-wise querying of 2D objects, for a InterfaceGraphic3D window.
ToolQueryShape2D(InterfaceShapeQuery) - Constructor for class mgui.interfaces.tools.shapes.ToolQueryShape2D
ToolQueryShape2D(InterfaceShapeQuery.QueryMode, InterfaceShapeQuery) - Constructor for class mgui.interfaces.tools.shapes.ToolQueryShape2D
ToolQueryShape3D - Class in mgui.interfaces.tools.shapes: Tool allowing point-and-click vertex-wise querying of 3D objects, for a InterfaceGraphic3D window.
ToolQueryShape3D(InterfaceShapeQuery) - Constructor for class mgui.interfaces.tools.shapes.ToolQueryShape3D
ToolQueryShape3D(InterfaceShapeQuery.QueryMode, InterfaceShapeQuery) - Constructor for class mgui.interfaces.tools.shapes.ToolQueryShape3D
ToolReversePolygon2D - Class in mgui.interfaces.tools.shapes
ToolReversePolygon2D() - Constructor for class mgui.interfaces.tools.shapes.ToolReversePolygon2D
ToolRuler2D - Class in mgui.interfaces.tools.shapes: Allows the user to measure distance on a 2D window, along a path with N nodes.
ToolRuler2D() - Constructor for class mgui.interfaces.tools.shapes.ToolRuler2D
ToolRuler2D(Tool2D) - Constructor for class mgui.interfaces.tools.shapes.ToolRuler2D
ToolSelectMeshBoundaryNodes - Class in mgui.interfaces.tools.shapes
ToolSelectMeshBoundaryNodes() - Constructor for class mgui.interfaces.tools.shapes.ToolSelectMeshBoundaryNodes
ToolSelectNodesWithPolygon - Class in mgui.interfaces.tools.shapes: Tool specifies options with a dialog and then calls an inner class instance of Tool3D to allow the user to select nodes on the Canvas3D.
ToolSelectNodesWithPolygon() - Constructor for class mgui.interfaces.tools.shapes.ToolSelectNodesWithPolygon
ToolSelectRegionBoundaryNodes - Class in mgui.interfaces.tools.shapes: Tool selects region boundary nodes of a mesh region (defined by its vertex values) based upon a vertex selected by a mouse click.
ToolSelectRegionBoundaryNodes() - Constructor for class mgui.interfaces.tools.shapes.ToolSelectRegionBoundaryNodes
ToolSelectShape2D - Class in mgui.interfaces.tools.shapes: 2D tool for selecting/deselcting shapes.
ToolSelectShape2D(ShapeSelectionSet) - Constructor for class mgui.interfaces.tools.shapes.ToolSelectShape2D
ToolSelectShape2D(ShapeSelectionSet, int) - Constructor for class mgui.interfaces.tools.shapes.ToolSelectShape2D
ToolSelectShape3D - Class in mgui.interfaces.tools.shapes: 3D tool for selecting/deselcting shapes.
ToolSelectShape3D(ShapeSelectionSet) - Constructor for class mgui.interfaces.tools.shapes.ToolSelectShape3D
ToolSelectShape3D(ShapeSelectionSet, int) - Constructor for class mgui.interfaces.tools.shapes.ToolSelectShape3D
toolStateChanged(Tool) - Method in class mgui.interfaces.InterfaceSelectionPanel
toolStateChanged(Tool) - Method in class mgui.interfaces.queries.InterfaceQueryPanel
toolStateChanged(ToolEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphic
toolStateChanged(ToolEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
toolStateChanged(ToolEvent) - Method in class mgui.interfaces.InterfaceSelectionPanel
toolStateChanged(ToolEvent) - Method in class mgui.interfaces.queries.InterfaceQueryPanel
toolStateChanged(ToolEvent) - Method in interface mgui.interfaces.tools.ToolListener
ToolTestInternalPoint2D - Class in mgui.interfaces.tools.shapes
ToolTestInternalPoint2D() - Constructor for class mgui.interfaces.tools.shapes.ToolTestInternalPoint2D
ToolWindowZoom2D - Class in mgui.interfaces.tools.graphics: Interactive tool which allows the user to zoom on a window within the current view.
ToolWindowZoom2D() - Constructor for class mgui.interfaces.tools.graphics.ToolWindowZoom2D
ToolWindowZoom2D(Tool2D) - Constructor for class mgui.interfaces.tools.graphics.ToolWindowZoom2D
ToolZoomExt2D - Class in mgui.interfaces.tools.graphics
ToolZoomExt2D() - Constructor for class mgui.interfaces.tools.graphics.ToolZoomExt2D
ToolZoomExt2D(int) - Constructor for class mgui.interfaces.tools.graphics.ToolZoomExt2D
TOP_LEFT - Static variable in class mgui.util.ImageFunctions
topo_comment - Variable in class mgui.io.foreign.caret.CaretSurfaceInfo: topo header: BeginHeader comment closed topology, cleaned version date 28 May 2002 13:33:16 encoding ASCII perimeter_id CLOSED resolution FULL sampling ORIGINAL EndHeader
topo_file - Variable in class mgui.io.standard.gifti.xml.GiftiXMLHandler
topo_perimeter_id - Variable in class mgui.io.foreign.caret.CaretSurfaceInfo
topo_resolution - Variable in class mgui.io.foreign.caret.CaretSurfaceInfo
topo_sampling - Variable in class mgui.io.foreign.caret.CaretSurfaceInfo
topoFile - Variable in class mgui.io.foreign.caret.CaretSurfaceOutOptions
toPoint(Point3d) - Method in class au.edu.unsw.cse.View3d
toString() - Method in class au.edu.unsw.cse.Edge3d
toString() - Method in class au.edu.unsw.cse.Point3d
toString() - Method in class au.edu.unsw.cse.Quaternion
toString() - Method in class au.edu.unsw.cse.Site3d
toString() - Method in class au.edu.unsw.cse.Timer
toString() - Method in class au.edu.unsw.cse.Triangle3d
toString() - Method in class au.edu.unsw.cse.View3dInfo
toString() - Method in class au.edu.unsw.cse.VRMLState
toString() - Method in class mgui.datasources.DataConnection
toString() - Method in class mgui.datasources.DataField
toString() - Method in class mgui.datasources.DataQuery
toString() - Method in class mgui.datasources.DataSource
toString() - Method in class mgui.datasources.DataTable
toString() - Method in class mgui.datasources.DataTableSet
toString() - Method in class mgui.datasources.DataType
toString() - Method in class mgui.geometry.Box3D
toString() - Method in class mgui.geometry.Plane3D
toString() - Method in class mgui.geometry.Radius2D
toString() - Method in class mgui.geometry.Triangle3D
toString() - Method in class mgui.geometry.util.NodeShape
toString() - Method in class mgui.interfaces.attributes.Attribute
toString() - Method in class mgui.interfaces.attributes.AttributeList
toString() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
toString() - Method in class mgui.interfaces.datasources.InterfaceDatasourcePanel
toString() - Method in class mgui.interfaces.graphics.Graphic2DGrid
toString() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
toString() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
toString() - Method in class mgui.interfaces.graphics.InterfaceGraphicPanel
toString() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
toString() - Method in class mgui.interfaces.graphics.video.SetView3DTask
toString() - Method in class mgui.interfaces.graphics.video.Video3D
toString() - Method in class mgui.interfaces.graphics.video.VideoTaskType
toString() - Method in class mgui.interfaces.graphics.View3D
toString() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
toString() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
toString() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplayTitle
toString() - Method in class mgui.interfaces.InterfaceButtonPanel
toString() - Method in class mgui.interfaces.InterfaceDisplayPanel
toString() - Method in class mgui.interfaces.InterfaceSelectionPanel
toString() - Method in class mgui.interfaces.InterfaceSplitPanel
toString() - Method in class mgui.interfaces.InterfaceWorkspace
toString() - Method in class mgui.interfaces.io.InterfaceFilePanel
toString() - Method in class mgui.interfaces.io.InterfaceIOType
toString() - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
toString() - Method in class mgui.interfaces.maps.Camera3D
toString() - Method in class mgui.interfaces.maps.ContinuousColourMap
toString() - Method in class mgui.interfaces.maps.DiscreteColourMap
toString() - Method in class mgui.interfaces.maps.InterfaceMapPanel
toString() - Method in class mgui.interfaces.maps.Map3D
toString() - Method in class mgui.interfaces.maps.NameMap
toString() - Method in class mgui.interfaces.maps.TypeMap
toString() - Method in class mgui.interfaces.models.InterfaceDynamicModelPanel
toString() - Method in class mgui.interfaces.neuro.imaging.camino.InterfaceCaminoPanel
toString() - Method in class mgui.interfaces.neuro.InterfaceCorticalThicknessPanel
toString() - Method in class mgui.interfaces.neuro.InterfaceNeuroAtlas
toString() - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
toString() - Method in class mgui.interfaces.plots.InterfacePlot
toString() - Method in class mgui.interfaces.plots.InterfacePlotDisplay
toString() - Method in class mgui.interfaces.plots.osp.InterfaceStripChart
toString() - Method in class mgui.interfaces.projects.ProjectDirectory
toString() - Method in class mgui.interfaces.projects.ProjectInstance
toString() - Method in class mgui.interfaces.queries.InterfaceQueryPanel
toString() - Method in class mgui.interfaces.shapes.BoolPolygon2DInt
toString() - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
toString() - Method in class mgui.interfaces.shapes.Image2DInt
toString() - Method in class mgui.interfaces.shapes.Image3DInt
toString() - Method in class mgui.interfaces.shapes.InterfaceSectionSetPanel
toString() - Method in class mgui.interfaces.shapes.InterfaceShapesPanel
toString() - Method in class mgui.interfaces.shapes.IntPolygon2DInt
toString() - Method in class mgui.interfaces.shapes.LPolygon2DInt
toString() - Method in class mgui.interfaces.shapes.mesh.InterfaceMeshPanel
toString() - Method in class mgui.interfaces.shapes.Mesh3DInt
toString() - Method in class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt
toString() - Method in class mgui.interfaces.shapes.neuro.CorticalSurfaceSet3DInt
toString() - Method in class mgui.interfaces.shapes.neuro.InterfaceNeuroMeshPanel
toString() - Method in class mgui.interfaces.shapes.neuro.InterfaceNeuroMeshPanel2
toString() - Method in class mgui.interfaces.shapes.PointSet3DInt
toString() - Method in class mgui.interfaces.shapes.Polygon2DInt
toString() - Method in class mgui.interfaces.shapes.Polygon3DInt
toString() - Method in class mgui.interfaces.shapes.PolygonSet3DInt
toString() - Method in class mgui.interfaces.shapes.queries.InterfaceShapeQuery
toString() - Method in class mgui.interfaces.shapes.queries.ShapeSummaryQuery
toString() - Method in class mgui.interfaces.shapes.Rect2DInt
toString() - Method in class mgui.interfaces.shapes.Rect3DInt
toString() - Method in class mgui.interfaces.shapes.SectionSet3DInt
toString() - Method in class mgui.interfaces.shapes.selection.InterfaceSelectionSet
toString() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
toString() - Method in class mgui.interfaces.shapes.Shape2DInt
toString() - Method in class mgui.interfaces.shapes.Shape2DSelectionSet
toString() - Method in class mgui.interfaces.shapes.Shape3DInt
toString() - Method in class mgui.interfaces.shapes.ShapeModel3D
toString() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
toString() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
toString() - Method in class mgui.interfaces.shapes.TestTextureInt
toString() - Method in class mgui.interfaces.shapes.VectorSet3DInt
toString() - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
toString() - Method in class mgui.interfaces.shapes.Volume3DInt
toString() - Method in class mgui.interfaces.tables.InterfaceDataTable
toString() - Method in class mgui.interfaces.tables.InterfaceDataTableTitle
toString() - Method in class mgui.interfaces.tools.InterfaceTool2DPanel: Deprecated.
toString() - Method in class mgui.interfaces.tools.InterfaceToolPanel
toString() - Method in class mgui.interfaces.trees.InterfaceTreePanel
toString() - Method in class mgui.interfaces.variables.MatrixInt
toString() - Method in class mgui.interfaces.variables.StringVectorInt
toString() - Method in class mgui.interfaces.variables.VariableInt
toString() - Method in class mgui.interfaces.variables.VectorInt
toString() - Method in class mgui.io.FileLoader
toString() - Method in class mgui.io.FileWriter
toString() - Method in class mgui.io.foreign.vol.CoordAttr
toString() - Method in class mgui.io.foreign.vol.StringAttr
toString() - Method in class mgui.models.dynamic.functions.Function
toString() - Method in class mgui.models.dynamic.functions.SigmoidFunction
toString() - Method in class mgui.models.environments.SimpleEnvironment
toString() - Method in class mgui.models.updaters.PulseTrainUpdater.CurrentPulse
toString() - Method in class mgui.models.updaters.PulseTrainUpdater
toString() - Method in class mgui.models.updaters.SimpleEnvironmentUpdater
toString() - Method in class mgui.morph.sections.InterfaceMorphPanel
toString() - Method in class mgui.morph.sections.InterfaceMorphPanel2
toString() - Method in class mgui.morph.sections.InterfaceRadialRep
toString() - Method in class mgui.morph.sections.InterfaceRadialRep2
toString() - Method in class mgui.morph.sections.MorphSections3DInt
toString() - Method in class mgui.morph.sections.RadialRep2DInt
toString() - Method in class mgui.neuro.components.AbstractAxon
toString() - Method in class mgui.neuro.components.AbstractDendrite
toString() - Method in class mgui.neuro.components.AbstractDendrites
toString() - Method in class mgui.neuro.components.AbstractMotorNeuron
toString() - Method in class mgui.neuro.components.AbstractNeuron
toString() - Method in class mgui.neuro.components.AbstractSensoryNeuron
toString() - Method in class mgui.neuro.components.AbstractSoma
toString() - Method in class mgui.neuro.components.AbstractSynapse
toString() - Method in class mgui.neuro.components.cortical.functions.BiexponentialFunction
toString() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
toString() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalConnection
toString() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalOutput
toString() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
toString() - Method in class mgui.neuro.graphs.CorticalNetworkGraph
toString() - Method in class mgui.neuro.graphs.NeuralNetGraph
toString() - Method in class mgui.neuro.imaging.camino.CaminoProject
toString() - Method in class mgui.neuro.networks.CorticalNetwork
toString() - Method in class mgui.neuro.updaters.PulseTrainUpdater.CurrentPulse
toString() - Method in class mgui.neuro.updaters.PulseTrainUpdater
toString() - Method in class mgui.numbers.MguiBoolean
toString() - Method in class mgui.numbers.MguiDouble
toString() - Method in class mgui.numbers.MguiFloat
toString() - Method in class mgui.numbers.MguiInteger
toString() - Method in class mgui.numbers.MguiLong
toString() - Method in class mgui.numbers.MguiShort
toString() - Method in class mgui.pipelines.InterfacePipeline
toString() - Method in class mgui.pipelines.PipelineFork
toString() - Method in class mgui.pipelines.PipelineProcess
toString() - Method in class mgui.pipelines.PipelineProcessInstance
toString() - Method in class mgui.pipelines.TaskParameter
toString() - Method in class mgui.pipelines.TaskParameterInstance
toString() - Method in class mgui.stats.Histogram
toString() - Method in class mgui.util.Colour3f
toString() - Method in class mgui.util.Colour4f
toString() - Method in class mgui.util.Unit
toString(boolean) - Static method in class mgui.numbers.MguiBoolean
toString(String) - Method in class mgui.numbers.MguiBoolean
toString(String) - Method in class mgui.numbers.MguiDouble
toString(String) - Method in class mgui.numbers.MguiFloat
toString(String) - Method in class mgui.numbers.MguiInteger
toString(String) - Method in class mgui.numbers.MguiLong
toString(String) - Method in interface mgui.numbers.MguiNumber: Returns the value of this number as a String, formatted with pattern.
toString(String) - Method in class mgui.numbers.MguiShort
toVariable(String) - Static method in class mgui.interfaces.shapes.InterfaceShape: Converts a column name to a legitimate variable name
toVRML() - Method in class au.edu.unsw.cse.Point3d
toVRML() - Method in class au.edu.unsw.cse.QuadMesh3d: Turn into VRML
toVRML() - Method in class au.edu.unsw.cse.Quaternion: Convert to VRML representation: axis + rotation angle
toVRML(VRMLState) - Static method in class au.edu.unsw.cse.AnimationWidgetVRML
toVRML(VRMLState) - Method in class au.edu.unsw.cse.Axes
toVRML(VRMLState) - Method in interface au.edu.unsw.cse.Object3d: turn into VRML
toVRML(VRMLState) - Method in class au.edu.unsw.cse.Object3dAdaptor
toVRML(VRMLState) - Method in class au.edu.unsw.cse.Object3dList
toVRML(VRMLState) - Method in class au.edu.unsw.cse.Point3dObject3d
toVRML(VRMLState) - Method in class au.edu.unsw.cse.Points3d
toVRML(VRMLState) - Method in class au.edu.unsw.cse.Viewer
toVRML(VRMLState, int) - Method in class au.edu.unsw.cse.ColorControl
toVRML(String) - Method in class au.edu.unsw.cse.View3dInfo
toVRMLBody(VRMLState) - Method in class au.edu.unsw.cse.Edge3d
toVRMLBody(VRMLState) - Method in class au.edu.unsw.cse.Object3dAdaptor
toVRMLBody(VRMLState) - Method in class au.edu.unsw.cse.Site3d
toVRMLBody(VRMLState) - Method in class au.edu.unsw.cse.Triangle3d
toVRMLBody(VRMLState) - Method in class au.edu.unsw.cse.Triangle3dPlus
TrackVisTractHeader - Class in mgui.io.foreign.trackvis: Data structure for a TrackVis tract file header.
TrackVisTractHeader() - Constructor for class mgui.io.foreign.trackvis.TrackVisTractHeader
TrackVisTractLoader - Class in mgui.io.foreign.trackvis
TrackVisTractLoader() - Constructor for class mgui.io.foreign.trackvis.TrackVisTractLoader
TrackVisTractLoader(File) - Constructor for class mgui.io.foreign.trackvis.TrackVisTractLoader
transfer_type - Variable in class mgui.io.domestic.shapes.VolumeInputOptions
transferFunction - Variable in class mgui.neuro.components.simple.SimpleSoma
transform - Variable in class mgui.io.standard.nifti.NiftiVolumeLoader
transform(Matrix3D) - Method in class au.edu.unsw.cse.Cube: compute new position of cube
transform(Matrix3D) - Method in interface au.edu.unsw.cse.Object3d
transform(Matrix3D) - Method in class au.edu.unsw.cse.Object3dAdaptor
transform(Matrix3D) - Method in class au.edu.unsw.cse.Object3dList
transform(Matrix3D) - Method in class au.edu.unsw.cse.Point3dObject3d
transform(Matrix3D) - Method in class au.edu.unsw.cse.Polygon3d: compute new position of pol
transform(Matrix3D) - Method in class au.edu.unsw.cse.QuadMesh3d: compute new position of pol
transform(Matrix3D) - Method in class au.edu.unsw.cse.Triangle3d: compute new position of tri
transform(Matrix3D) - Method in class au.edu.unsw.cse.Viewer
transform(Layer, Point2D) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
transform(Matrix) - Method in interface mgui.geometry.Shape: Transform this shape with affine transformation Jama matrix M.
transform(Matrix) - Method in class mgui.geometry.Shape2D
transform(Matrix) - Method in class mgui.geometry.Shape3D
transform(Point2D) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
transform(Integer) - Method in class mgui.interfaces.shapes.Shape3DInt.VertexShapeTransformer
transform(Shape, Matrix) - Static method in class mgui.geometry.util.GeometryFunctions: Transforms shape with the given affine transformation Jama matrix matrix.
transform(Shape, Matrix, ProgressUpdater) - Static method in class mgui.geometry.util.GeometryFunctions: Transforms shape with the given affine transformation Jama matrix matrix.
transform(Shape, Matrix4d) - Static method in class mgui.geometry.util.GeometryFunctions: Transforms shape with the given affine transformation matrix matrix.
transform(Shape, Matrix4d, ProgressUpdater) - Static method in class mgui.geometry.util.GeometryFunctions: Transforms shape with the given affine transformation matrix matrix.
transform(Shape, Matrix4f) - Static method in class mgui.geometry.util.GeometryFunctions: Transforms shape with the given affine transformation matrix matrix.
transform(Shape, Matrix4f, ProgressUpdater) - Static method in class mgui.geometry.util.GeometryFunctions: Transforms shape with the given affine transformation matrix matrix.
transform(Matrix4d) - Method in interface mgui.geometry.Shape: Transform this shape with affine transformation matrix M.
transform(Matrix4d) - Method in class mgui.geometry.Shape2D
transform(Matrix4d) - Method in class mgui.geometry.Shape3D
transform(Tuple3d, Matrix4d) - Static method in class mgui.geometry.util.GeometryFunctions: Transforms vector with the given affine transformation matrix matrix.
transform(Tuple3f, Matrix4d) - Static method in class mgui.geometry.util.GeometryFunctions: Transforms vector with the given affine transformation matrix matrix.
transform(Tuple3f, Matrix4f) - Static method in class mgui.geometry.util.GeometryFunctions: Transforms vector with the given affine transformation matrix matrix.
transform(V) - Method in class mgui.interfaces.graphs.layouts.Coordinate3DLayout
transform(V) - Method in class mgui.interfaces.graphs.util.StaticLocationTransformer
transformMesh(Mesh3D, String, InterfaceProgressBar) - Method in class mgui.geometry.mesh.MeshEngine
transformPt(Point3d, Point) - Method in class mgui.interfaces.shapes.util.LocalToWindow: Transform the point from local coords to window coords
transformPt(Point3d, Point2d) - Method in class mgui.interfaces.shapes.util.LocalToWindow: Transform the point from local coords to window coords
transformShape3D(Shape3DInt, String, ProgressUpdater) - Method in class mgui.interfaces.shapes.util.ShapeEngine: Transforms shape according to method.
transformWithMatrix(Mesh3D, Matrix4d, InterfaceProgressBar) - Static method in class mgui.geometry.mesh.MeshFunctions
transformWithMatrix(Shape3D, Matrix4d, ProgressUpdater) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions: Transform shape_in with matrix and returns the result.
transformWithMatrixBlocking(Shape3D, Matrix4d, ProgressUpdater) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions: Transform shape_in with matrix and returns the result.
translate(double, double) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
translate(Shape3D, double, double, double) - Static method in class mgui.geometry.util.GeometryFunctions: Translates shape by the specified x, y, and z distances.
translate(Shape3D, Vector3d) - Static method in class mgui.geometry.util.GeometryFunctions: Translates shape by the specified vector.
translateMesh(Mesh3D) - Method in class mgui.geometry.mesh.MeshEngine
translateShape(Shape3D) - Method in class mgui.interfaces.shapes.util.ShapeEngine
translateX(double) - Method in class mgui.interfaces.maps.Camera3D
translateXY - Variable in class mgui.interfaces.maps.Camera3D
translateY(double) - Method in class mgui.interfaces.maps.Camera3D
TranslationChanged - mgui.interfaces.events.CameraEvent.EventType
transmit(AbstractCompartment, AbstractCompartment) - Method in class mgui.neuro.components.compartments.CompartmentalComponent: Transmit signals between compartments; should update appropriate state and/or temporary variables.
transmit(AbstractCompartment, AbstractCompartment) - Method in class mgui.neuro.components.compartments.CompartmentalDendrite
transmit(AbstractCompartment, AbstractCompartment) - Method in class mgui.neuro.components.compartments.CompartmentalNeuron
transmit(AbstractCompartment, AbstractCompartment) - Method in class mgui.neuro.components.compartments.CompartmentalSoma
tree - Variable in class mgui.interfaces.graphs.tree.GraphTreeCellRenderer
tree - Variable in class mgui.interfaces.shapes.trees.ShapeTreeCellRenderer
tree - Variable in class mgui.interfaces.trees.InterfaceTreeTable
tree_nodes - Variable in class mgui.interfaces.AbstractInterfaceObject
tree_nodes - Variable in class mgui.interfaces.InterfacePanel
TreeEvent - Class in mgui.interfaces.trees
TreeEvent(InterfaceTreeNode, InterfaceTreeNode, TreeEvent.EventType) - Constructor for class mgui.interfaces.trees.TreeEvent
TreeEvent(InterfaceTreeNode, InterfaceTreeNode, TreeEvent.EventType, int) - Constructor for class mgui.interfaces.trees.TreeEvent
TreeEvent(InterfaceTreeNode, TreeEvent.EventType) - Constructor for class mgui.interfaces.trees.TreeEvent
TreeEvent.EventType - Enum in mgui.interfaces.trees
TreeFunctions - Class in mgui.interfaces.trees.util: Utility class for operations on trees.
TreeFunctions() - Constructor for class mgui.interfaces.trees.util.TreeFunctions
TreeKeyHandler - Interface in mgui.interfaces.trees.util: Object which is prepared to handle a key-press event on its tree node.
TreeListener - Interface in mgui.interfaces.trees
treeNode - Variable in class mgui.datasources.DataField
treeNode - Variable in class mgui.datasources.DataTable
treeNode - Variable in class mgui.interfaces.graphs.InterfaceAbstractGraph
treeNode - Variable in class mgui.interfaces.InterfacePanel
treeNode - Variable in class mgui.interfaces.plots.InterfacePlot
treeNode - Variable in class mgui.interfaces.shapes.selection.ShapeSelectionSet
treeNodeDetached(TaskTreeNodeEvent) - Method in interface mgui.interfaces.pipelines.trees.TaskTreeNodeListener
treeNodeDetached(TaskTreeNodeEvent) - Method in class mgui.pipelines.PipelineTask
treeNodes - Variable in class mgui.interfaces.graphs.InterfaceAbstractGraph
treeNodes - Variable in class mgui.interfaces.plots.sgt.SgtPlotLayout
treeNodes - Variable in class mgui.models.environments.SimpleEnvironment
TreeObject - Interface in mgui.interfaces.trees: Interface for all objects which issue InterfaceTreeNodes.
TreeShape - Interface in mgui.interfaces.shapes.util
TreeTableCellEditor() - Constructor for class mgui.interfaces.trees.InterfaceTreeTable.TreeTableCellEditor
TreeTableCellRenderer(TreeModel) - Constructor for class mgui.interfaces.trees.InterfaceTreeTable.TreeTableCellRenderer
TreeTableModel - Interface in mgui.interfaces.trees: TreeTableModel is the model used by a JTreeTable.
TreeTableModelAdapter - Class in mgui.interfaces.trees: This is a wrapper class takes a TreeTableModel and implements the table model interface.
TreeTableModelAdapter(TreeTableModel, JTree) - Constructor for class mgui.interfaces.trees.TreeTableModelAdapter
treeUpdated(TreeEvent) - Method in class mgui.interfaces.trees.InterfaceTreePanel
treeUpdated(TreeEvent) - Method in interface mgui.interfaces.trees.TreeListener
tri - Variable in class au.edu.unsw.cse.Triangle3d
tri1 - Variable in class mgui.geometry.mesh.MeshEdge
tri2 - Variable in class mgui.geometry.mesh.MeshEdge
Triangle2D - Class in mgui.geometry: Represents a 2D triangle.
Triangle2D() - Constructor for class mgui.geometry.Triangle2D
Triangle2D(ArrayList<Point2f>) - Constructor for class mgui.geometry.Triangle2D
Triangle2D(Point2f, Point2f, Point2f) - Constructor for class mgui.geometry.Triangle2D
Triangle3d - Class in au.edu.unsw.cse
Triangle3d(Point3d[], int) - Constructor for class au.edu.unsw.cse.Triangle3d: Create a triangle with given colour
Triangle3d(Point3d, Point3d, Point3d, int) - Constructor for class au.edu.unsw.cse.Triangle3d
Triangle3D - Class in mgui.geometry: Represents a 3D triangle.
Triangle3D() - Constructor for class mgui.geometry.Triangle3D
Triangle3D(Point3f, Point3f, Point3f) - Constructor for class mgui.geometry.Triangle3D
Triangle3dPlus - Class in au.edu.unsw.cse: A 3d triangle with a list of associated points
Triangle3dPlus(Point3d, Point3d, Point3d, int) - Constructor for class au.edu.unsw.cse.Triangle3dPlus
triangles - Variable in class mgui.geometry.mesh.MeshEdgeSet
triangulate(Mesh3D, ArrayList<MguiInteger>) - Static method in class mgui.geometry.mesh.MeshFunctions: Triangulates the given neighbourhood by adding faces using recursive loop splitting
TricubicSplineInterpolaterUpdater - Class in mgui.geometry.volume: Extends TricubicSplineInterpolator to allow a ProgressUpdater.
TricubicSplineInterpolaterUpdater() - Constructor for class mgui.geometry.volume.TricubicSplineInterpolaterUpdater
trim(String) - Static method in class mgui.util.StringFunctions
TXT_SECT - Variable in class mgui.interfaces.shapes.InterfaceSectionSetPanel
txtNewShapeSet - Variable in class mgui.io.domestic.shapes.PolygonSet3DInputDialogBox
txtPrefix - Variable in class mgui.io.domestic.shapes.SurfaceDataOutputDialogBox
txtURL - Variable in class mgui.interfaces.datasources.DataSourceDialogPanel
type - Variable in class mgui.interfaces.DisplayPanelEvent
type - Variable in class mgui.interfaces.graphics.video.VideoTaskType
type - Variable in class mgui.interfaces.graphs.AbstractGraphEdge
type - Variable in class mgui.interfaces.InterfaceDialogBox
type - Variable in class mgui.interfaces.InterfacePanel
type - Variable in enum mgui.interfaces.io.InterfaceFilePanel.Command
type - Variable in class mgui.interfaces.io.InterfaceIOType
type - Variable in class mgui.interfaces.maps.TypeMap
type - Variable in class mgui.interfaces.plots.sgt.SgtAxis
type - Variable in class mgui.interfaces.shapes.selection.ShapeSelectionEvent
type - Variable in class mgui.interfaces.shapes.ShapeModelEvent
type - Variable in class mgui.interfaces.shapes.VertexDataColumnEvent
type - Variable in class mgui.interfaces.SplitPanelEvent
type - Variable in class mgui.interfaces.TabbedDisplayEvent
type - Variable in class mgui.interfaces.tools.ToolEvent
type - Variable in class mgui.io.domestic.datasources.DataSourceLoader
type - Variable in class mgui.io.domestic.datasources.DataSourceWriter
type - Variable in class mgui.io.domestic.graphs.GraphInputOptions
type - Variable in class mgui.io.standard.xml.x3d.Vector3DInputOptions
type - Variable in class mgui.io.standard.xml.XMLOutputOptions
type - Variable in class mgui.pipelines.StaticPipelineEvent
TYPE_2D - Static variable in class mgui.interfaces.graphics.video.VideoTaskType
TYPE_2D_3D - Static variable in class mgui.interfaces.graphics.video.VideoTaskType
TYPE_3D - Static variable in class mgui.interfaces.graphics.video.VideoTaskType
TYPE_ABGR - Static variable in class mgui.io.foreign.vol.VolumeInputOptions
TYPE_ARGB - Static variable in class mgui.io.foreign.vol.VolumeInputOptions
TYPE_BGR - Static variable in class mgui.io.foreign.vol.VolumeInputOptions
TYPE_BGRA - Static variable in class mgui.io.foreign.vol.VolumeInputOptions
TYPE_CMAP - Static variable in class mgui.io.foreign.vol.VolumeInputOptions
TYPE_INPUT - Static variable in class mgui.interfaces.io.InterfaceIOType
TYPE_INTENSITY - Static variable in class mgui.io.foreign.vol.VolumeInputOptions
TYPE_INTENSITY_CMAP - Static variable in class mgui.interfaces.shapes.volume.Volume3DTexture
TYPE_INTENSITY_CMAP_ALPHA - Static variable in class mgui.interfaces.shapes.volume.Volume3DTexture
TYPE_INTENSITY_GREY - Static variable in class mgui.interfaces.shapes.volume.Volume3DTexture
TYPE_INTENSITY_GREY_ALPHA - Static variable in class mgui.interfaces.shapes.volume.Volume3DTexture
TYPE_OUTPUT - Static variable in class mgui.interfaces.io.InterfaceIOType
TYPE_RANDOM - Static variable in class mgui.interfaces.io.InterfaceIOType
TYPE_RGB - Static variable in class mgui.interfaces.shapes.volume.Volume3DTexture
TYPE_RGB - Static variable in class mgui.io.foreign.vol.VolumeInputOptions
TYPE_RGB_ALPHA - Static variable in class mgui.interfaces.shapes.volume.Volume3DTexture
TYPE_RGBA - Static variable in class mgui.io.foreign.vol.VolumeInputOptions
TypeExistsException - Exception in mgui.interfaces.maps
TypeExistsException(int) - Constructor for exception mgui.interfaces.maps.TypeExistsException
typelist - Static variable in class mgui.datasources.DataField
TypeMap - Class in mgui.interfaces.maps: Holds a static list of constants representing distinct types, and an integer field indicating the type of the present instance.
TypeMap() - Constructor for class mgui.interfaces.maps.TypeMap
types - Variable in class mgui.interfaces.maps.TypeMap
types - Variable in class mgui.io.domestic.shapes.ShapeOutputOptions

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