Index

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _
All Classes|All Packages

I

i - Variable in class au.edu.unsw.cse.ColorControl

i - Static variable in class au.edu.unsw.cse.Point3d

icon - Variable in class mgui.interfaces.graphics.util.Axes3D

icon - Variable in class mgui.interfaces.gui.InterfaceComboBoxRenderer

icon - Variable in class mgui.interfaces.maps.Camera3D

icon - Variable in class mgui.interfaces.plots.InterfacePlot

icon - Variable in class mgui.interfaces.shapes.InterfaceShape

icon - Variable in class mgui.interfaces.tools.dialogs.DialogTool

icon - Variable in class mgui.interfaces.tools.graphics.Tool2D

icon - Variable in class mgui.interfaces.tools.graphics.Tool3D

icon - Variable in class mgui.interfaces.tools.graphs.ToolGraph

icon_type - Variable in class mgui.interfaces.projects.InterfaceProjectOptions

IconObject - Interface in mgui.resources.icons

Interface for objects which have an associated icon.

id - Variable in class au.edu.unsw.cse.ColorControl

id - Variable in class mgui.neuro.components.AbstractNeuroComponent

id() - Method in interface au.edu.unsw.cse.Object3d

id() - Method in class au.edu.unsw.cse.Object3dAdaptor

id() - Method in class au.edu.unsw.cse.Point3dObject3d

ID - Variable in class mgui.interfaces.shapes.InterfaceShape

id_field - Variable in class mgui.interfaces.neuro.CorticalThicknessDataTableOptions

id_string - Variable in class mgui.io.foreign.trackvis.TrackVisTractHeader

idFactory - Variable in class mgui.interfaces.shapes.ShapeSet2DInt

idFactory - Variable in class mgui.models.dynamic.DynamicModelEngine

idFactory - Variable in class mgui.models.networks.AbstractNetwork

IDFactory - Class in mgui.util

Static factory that produces unique ID numbers (long)

IDFactory() - Constructor for class mgui.util.IDFactory

idStr - Variable in class mgui.interfaces.shapes.Shape2DInt

idStr - Variable in class mgui.interfaces.shapes.Shape3DInt

idStr - Variable in class mgui.morph.sections.AttributeNode2D

idVRML() - Method in class au.edu.unsw.cse.ColorControl

idVRML(int) - Method in class au.edu.unsw.cse.Viewer

idVRML(int) - Method in class au.edu.unsw.cse.VRMLState

ignore_large_bin - Variable in class mgui.stats.Histogram

Iinj - Variable in class mgui.neuro.components.compartments.SimpleCompartment

ijk - Static variable in class au.edu.unsw.cse.Point3d

image - Variable in class mgui.interfaces.shapes.Image2DInt

image_orientation_patient - Variable in class mgui.io.foreign.trackvis.TrackVisTractHeader

Image2DInt - Class in mgui.interfaces.shapes

Displays an image inside a Rect2D shape.

Image2DInt() - Constructor for class mgui.interfaces.shapes.Image2DInt

Image2DInt(Rect2D, BufferedImage, boolean) - Constructor for class mgui.interfaces.shapes.Image2DInt

Image2DTexture - Class in mgui.interfaces.shapes.util

Creates a Texture2D object from a given image.

Image2DTexture() - Constructor for class mgui.interfaces.shapes.util.Image2DTexture

Image2DTexture(BufferedImage) - Constructor for class mgui.interfaces.shapes.util.Image2DTexture

Image2DTexture(BufferedImage, boolean) - Constructor for class mgui.interfaces.shapes.util.Image2DTexture

Image3DInt - Class in mgui.interfaces.shapes

Draws a rectangular planar image in R3.

Image3DInt() - Constructor for class mgui.interfaces.shapes.Image3DInt

Image3DInt(Rect3D, BufferedImage) - Constructor for class mgui.interfaces.shapes.Image3DInt

Image3DInt(Rect3D, BufferedImage, boolean) - Constructor for class mgui.interfaces.shapes.Image3DInt

Image3DTexture - Class in mgui.interfaces.shapes.util

Image3DTexture() - Constructor for class mgui.interfaces.shapes.util.Image3DTexture

Image3DTexture(BufferedImage, int) - Constructor for class mgui.interfaces.shapes.util.Image3DTexture

Image3DTexture(BufferedImage, int, boolean) - Constructor for class mgui.interfaces.shapes.util.Image3DTexture

ImageFileLoader - Class in mgui.io.standard.imaging

ImageFileLoader() - Constructor for class mgui.io.standard.imaging.ImageFileLoader

ImageFilter - Class in mgui.interfaces.shapes.util

ImageFilter() - Constructor for class mgui.interfaces.shapes.util.ImageFilter

ImageFunctions - Class in mgui.util

Utility class for imaging-related functions.

ImageFunctions() - Constructor for class mgui.util.ImageFunctions

images - Variable in class mgui.interfaces.shapes.volume.Volume3DTexture

images_per_second - Variable in class mgui.io.domestic.videos.ImageStackVideoOptions

ImageStackVideoDialog - Class in mgui.io.domestic.videos

Sets parameters for an image stack output operation, via ImageStackVideoWriter.

ImageStackVideoDialog() - Constructor for class mgui.io.domestic.videos.ImageStackVideoDialog

ImageStackVideoDialog(JFrame, InterfacePanel, VideoOutputOptions) - Constructor for class mgui.io.domestic.videos.ImageStackVideoDialog

ImageStackVideoOptions - Class in mgui.io.domestic.videos

Options for a video stack output operation; i.e., vis ImageStackVideoWriter.

ImageStackVideoOptions() - Constructor for class mgui.io.domestic.videos.ImageStackVideoOptions

ImageStackVideoOptions(int, long, long, long, File) - Constructor for class mgui.io.domestic.videos.ImageStackVideoOptions

ImageStackVideoOptions(int, long, long, long, File, Dimension) - Constructor for class mgui.io.domestic.videos.ImageStackVideoOptions

ImageStackVideoWriter - Class in mgui.io.domestic.videos

Outputs a Video to a stack of images which can be used to compile a video using a utility such as VirtualDub.

ImageStackVideoWriter() - Constructor for class mgui.io.domestic.videos.ImageStackVideoWriter

ImageStackVideoWriter(File) - Constructor for class mgui.io.domestic.videos.ImageStackVideoWriter

imageUpdate(Image, int, int, int, int, int) - Method in class mgui.interfaces.pipelines.trees.TaskTreeNode

ImagingIOFunctions - Class in mgui.io.imaging

ImagingIOFunctions() - Constructor for class mgui.io.imaging.ImagingIOFunctions

importData(TransferHandler.TransferSupport) - Method in class mgui.interfaces.pipelines.trees.PipelineTreeTransferHandler

ImportDataTableDialogBox - Class in mgui.io.domestic.datasources

Interface which allows the user to define and import tabular data (e.g., from a text file, spreadsheet, or matrix) into a new table in a given data source.

ImportDataTableDialogBox() - Constructor for class mgui.io.domestic.datasources.ImportDataTableDialogBox

ImportDataTableDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.domestic.datasources.ImportDataTableDialogBox

ImportDataTableLoader - Class in mgui.io.domestic.datasources

Imports data from an external format into a new DataSource table.

ImportDataTableLoader() - Constructor for class mgui.io.domestic.datasources.ImportDataTableLoader

ImportDataTableOptions - Class in mgui.io.domestic.datasources

Specifies options for importing data to a data source table.

ImportDataTableOptions() - Constructor for class mgui.io.domestic.datasources.ImportDataTableOptions

ImportDataTableTextLoader - Class in mgui.io.domestic.datasources

Imports data from a delimited text file into a new DataSource table.

ImportDataTableTextLoader() - Constructor for class mgui.io.domestic.datasources.ImportDataTableTextLoader

ImportDataTableTextOptions - Class in mgui.io.domestic.datasources

Specifies options for importing data from a text file to a data source table.

ImportDataTableTextOptions() - Constructor for class mgui.io.domestic.datasources.ImportDataTableTextOptions

in - Variable in class mgui.interfaces.shapes.mesh.MeshDataMaskOptions

in - Static variable in class mgui.neuro.imaging.camino.tasks.Shredder2

include - Variable in class mgui.io.foreign.caret.CaretMetricInOptions

include - Variable in class mgui.io.foreign.caret.CaretPaintInOptions

include_shape - Variable in class mgui.io.domestic.shapes.ShapeModel3DOutputOptions

Increment - mgui.io.standard.xml.svg.SVGInputOptions.SVGMap

incremental - Variable in class mgui.interfaces.attributes.video.AttributeObjectVideoTask

Incremental - Class in au.edu.unsw.cse

Incremental(Point3dObject3d[]) - Constructor for class au.edu.unsw.cse.Incremental

Indeterminate - mgui.interfaces.ProgressUpdater.Mode

index - Variable in class mgui.datasources.LinkedDataStream

index - Variable in class mgui.geometry.mesh.EnergySphere.EnergyNode

index - Variable in class mgui.geometry.util.SortedShape3D.Vertex

index - Variable in class mgui.interfaces.shapes.queries.QueryShapeVertex

index - Variable in class mgui.interfaces.shapes.util.ShapeVertexObject

index - Variable in class mgui.models.environments.AbstractEnvironmentDataSource

index - Variable in class mgui.neuro.components.cortical.AbstractCorticalInput

index - Variable in class mgui.neuro.components.cortical.simple.SimpleCorticalOutputEvent

index - Variable in class mgui.neuro.components.simple.SimpleMotorNeuronEvent

index_map - Variable in class mgui.image.util.WindowedColourModel

index1 - Variable in class mgui.geometry.mesh.MeshFunctions.IndexedPoint3f

index2 - Variable in class mgui.geometry.mesh.MeshFunctions.IndexedPoint3f

IndexedPoint3f(Point3f, int) - Constructor for class mgui.geometry.mesh.MeshFunctions.IndexedPoint3f

indexes - Variable in class mgui.datasources.DataTable

indexes - Variable in class mgui.interfaces.maps.NameMap

indices - Variable in class mgui.interfaces.shapes.mesh.MeshDataMaskOptions

indices - Variable in class mgui.interfaces.shapes.Mesh2DInt

inflateMesh(Mesh3DInt, String, ProgressUpdater) - Method in class mgui.geometry.mesh.MeshEngine

inflateMeshTRP(Mesh3DInt, double, double, long, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions

Inflate this mesh using the TRP method.

inflateMeshTRP(Mesh3DInt, double, double, long, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshInflation

Inflates a given mesh, by relaxing its vertices towards the mean of its neighbours, as described by:

inflateTRP(Mesh3DInt, ProgressUpdater) - Method in class mgui.geometry.mesh.MeshEngine

info - Variable in class mgui.io.foreign.caret.CaretSurfaceOutOptions

inheritAttributesFromParent() - Method in class mgui.interfaces.shapes.InterfaceShape

init() - Method in class au.edu.unsw.cse.Applet3d

init() - Method in class au.edu.unsw.cse.AppletHull

init() - Method in class mgui.datasources.DataQuery

init() - Method in class mgui.datasources.DataSourceDriver

init() - Method in class mgui.datasources.DataTable

init() - Method in class mgui.interfaces.attributes.InterfaceAttributePanel

init() - Method in class mgui.interfaces.attributes.video.AttributeObjectVideoTaskDialogPanel

init() - Method in class mgui.interfaces.cocomac.InterfaceCoCoMacPanel

init() - Method in class mgui.interfaces.datasources.DataSourceDialogPanel

init() - Method in class mgui.interfaces.datasources.InterfaceDatasourcePanel

init() - Method in class mgui.interfaces.frames.SessionFrame

init() - Method in class mgui.interfaces.graphics.Graphic2DGrid

init() - Method in class mgui.interfaces.graphics.InterfaceGraphic

init() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D

init() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D

init() - Method in class mgui.interfaces.graphics.InterfaceGraphicPanel

init() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow

init() - Method in class mgui.interfaces.graphics.video.RotateView3DTaskDialogPanel

init() - Method in class mgui.interfaces.graphics.video.SetView3DTaskDialogPanel

init() - Method in class mgui.interfaces.graphics.video.Video

init() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph

init() - Method in class mgui.interfaces.graphs.tree.GraphTreeCellRenderer

init() - Method in class mgui.interfaces.gui.ColourBarOutDialog

init() - Method in class mgui.interfaces.gui.FileButton

init() - Method in class mgui.interfaces.gui.LineStyleDialog

init() - Method in class mgui.interfaces.InterfaceButtonPanel

init() - Method in class mgui.interfaces.InterfaceComboPanel

init() - Method in class mgui.interfaces.InterfaceDialogBox

init() - Method in class mgui.interfaces.InterfaceDisplayPanel

init() - Static method in class mgui.interfaces.InterfaceEnvironment

Initiate environment from the set init file, or the default init file if none is set.

init() - Method in class mgui.interfaces.InterfaceHideablePanel

init() - Method in class mgui.interfaces.InterfaceListPanel

init() - Method in class mgui.interfaces.InterfaceOptionsTabbedDialogBox

init() - Method in class mgui.interfaces.InterfacePanel

init() - Method in class mgui.interfaces.InterfaceSelectionPanel

init() - Method in class mgui.interfaces.InterfaceSplitPanel

init() - Method in class mgui.interfaces.InterfaceStatusBarPanel

init() - Method in class mgui.interfaces.io.InterfaceFilePanel

init() - Method in class mgui.interfaces.io.VolumeFileWriteDialog

Deprecated.

init() - Method in class mgui.interfaces.layouts.InterfaceLayoutPanel

init() - Method in class mgui.interfaces.layouts.InterfaceLayoutWindow

init() - Method in class mgui.interfaces.layouts.LayoutDocument

Initializes this document's attributes.

init() - Method in class mgui.interfaces.layouts.LayoutItem

Initiates this item's attributes.

init() - Method in class mgui.interfaces.maps.Camera3D

init() - Method in class mgui.interfaces.maps.ContinuousColourBar

init() - Method in class mgui.interfaces.maps.InterfaceMapPanel

init() - Method in class mgui.interfaces.math.MathExpressionDialogBox

init() - Method in class mgui.interfaces.models.InterfaceDynamicModelPanel

init() - Method in class mgui.interfaces.neuro.CorticalThicknessDataTableDialogBox

init() - Method in class mgui.interfaces.neuro.CorticalThicknessDialogBox

init() - Method in class mgui.interfaces.neuro.imaging.camino.CaminoProcessDialogBox

init() - Method in class mgui.interfaces.neuro.imaging.camino.CaminoProjectDialogBox

init() - Method in class mgui.interfaces.neuro.imaging.camino.CaminoTaskDialogBox

init() - Method in class mgui.interfaces.neuro.imaging.camino.InterfaceCaminoPanel

init() - Method in class mgui.interfaces.neuro.InterfaceCorticalThicknessPanel

init() - Method in class mgui.interfaces.pipelines.InterfacePipelinesPanel

init() - Method in class mgui.interfaces.pipelines.PipelineProcessDialogBox

init() - Method in class mgui.interfaces.pipelines.PipelineProcessInstanceDialogBox

init() - Method in class mgui.interfaces.plots.InterfacePlot

init() - Method in class mgui.interfaces.plots.InterfacePlotDisplay

init() - Method in class mgui.interfaces.plots.InterfacePlotMulti

init() - Method in class mgui.interfaces.plots.InterfacePlotPanel

init() - Method in class mgui.interfaces.plots.osp.InterfacePlotOsp

init() - Method in class mgui.interfaces.plots.osp.InterfaceStripChart

init() - Method in class mgui.interfaces.projects.InterfaceProject

init() - Method in class mgui.interfaces.projects.InterfaceProjectDialogBox

init() - Method in class mgui.interfaces.projects.InterfaceProjectPanel

init() - Method in class mgui.interfaces.projects.ProjectDataItem

init() - Method in class mgui.interfaces.projects.ProjectDirectoryDialogBox

init() - Method in class mgui.interfaces.queries.InterfaceQueryPanel

init() - Method in class mgui.interfaces.queries.QueryResultPanel

init() - Method in class mgui.interfaces.shapes.Box3DInt

init() - Method in class mgui.interfaces.shapes.dynamic.Volume4DInt

init() - Method in class mgui.interfaces.shapes.Image3DInt

init() - Method in class mgui.interfaces.shapes.InterfacePolygonPanel

init() - Method in class mgui.interfaces.shapes.InterfaceSectionSetPanel

init() - Method in class mgui.interfaces.shapes.InterfaceShapesPanel

init() - Method in class mgui.interfaces.shapes.LPolygon3DInt

init() - Method in class mgui.interfaces.shapes.mesh.InterfaceMeshPanel

init() - Method in class mgui.interfaces.shapes.mesh.MeshDataMaskOptionsDialog

init() - Method in class mgui.interfaces.shapes.mesh.MeshDataThresholdOptionsDialog

init() - Method in class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt

init() - Method in class mgui.interfaces.shapes.neuro.CorticalSurfaceSet3DInt

init() - Method in class mgui.interfaces.shapes.neuro.InterfaceNeuroMeshPanel

init() - Method in class mgui.interfaces.shapes.neuro.InterfaceNeuroMeshPanel2

init() - Method in class mgui.interfaces.shapes.paths.PathDataRenderer

init() - Method in class mgui.interfaces.shapes.Polygon3DInt

init() - Method in class mgui.interfaces.shapes.PolygonSet3DInt

init() - Method in class mgui.interfaces.shapes.Rect3DInt

init() - Method in class mgui.interfaces.shapes.SectionSet3DInt

init() - Method in class mgui.interfaces.shapes.selection.InterfaceSelectionSet

init() - Method in class mgui.interfaces.shapes.Shape3DInt

init() - Method in class mgui.interfaces.shapes.ShapeSet3DInt

init() - Method in class mgui.interfaces.shapes.ShapeStatsPanel

init() - Method in class mgui.interfaces.shapes.TestTextureInt

init() - Method in class mgui.interfaces.shapes.trees.ShapeTreeCellRenderer

init() - Method in class mgui.interfaces.shapes.Vector3DInt

init() - Method in class mgui.interfaces.shapes.VectorSet3DInt

init() - Method in class mgui.interfaces.shapes.video.ChangeSectionVideoTaskDialogPanel

init() - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel

init() - Method in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel

init() - Method in class mgui.interfaces.shapes.volume.VolumeMaskDialog_old

init() - Method in class mgui.interfaces.shapes.Volume3DInt

init() - Method in class mgui.interfaces.shapes.X3DScene3DInt

init() - Method in class mgui.interfaces.stats.HistogramPlot

init() - Method in class mgui.interfaces.tables.InterfaceDataTable

init() - Method in class mgui.interfaces.tools.dialogs.DialogTool

init() - Method in class mgui.interfaces.tools.InterfaceTool2DPanel

Deprecated.

init() - Method in class mgui.interfaces.tools.InterfaceToolPanel

init() - Method in class mgui.interfaces.tools.shapes.ToolSelectShape2D

init() - Method in class mgui.interfaces.tools.shapes.ToolSelectShape3D

init() - Method in class mgui.interfaces.trees.InterfaceTreeNode

init() - Method in class mgui.interfaces.trees.InterfaceTreePanel

init() - Method in class mgui.interfaces.variables.VariableInt

init() - Method in class mgui.io.domestic.maps.NameMapOutDialogBox

init() - Method in class mgui.io.domestic.network.CorticalNetworkMatrixInDialogBox

init() - Method in class mgui.io.domestic.shapes.MeshOptionsDialogBox

init() - Method in class mgui.io.domestic.shapes.PointSet2DInputDialogBox

init() - Method in class mgui.io.domestic.shapes.PointSet3DDataInputDialogBox

init() - Method in class mgui.io.domestic.shapes.PointSet3DInputDialogBox

init() - Method in class mgui.io.domestic.shapes.PolygonSet3DInputDialogBox

init() - Method in class mgui.io.domestic.shapes.ShapeInputDialogBox

init() - Method in class mgui.io.domestic.shapes.ShapeModel3DInputDialog

init() - Method in class mgui.io.domestic.shapes.ShapeModel3DOutputDialog

init() - Method in class mgui.io.domestic.shapes.ShapeOutputDialogBox

init() - Method in class mgui.io.domestic.shapes.SurfaceDataOutputDialogBox

init() - Method in class mgui.io.domestic.shapes.SurfaceInputDialogBox

init() - Method in class mgui.io.domestic.shapes.VectorSet3DInputDialogBox

init() - Method in class mgui.io.foreign.caret.CaretAreaColourInDialogBox

init() - Method in class mgui.io.foreign.caret.CaretMetricOptionsDialog

init() - Method in class mgui.io.foreign.caret.CaretPaintOptionsDialog

Deprecated.

init() - Method in class mgui.io.foreign.caret.CaretSurfaceOutDialogBox

init() - Method in class mgui.io.foreign.minc.MincSurfaceDataInDialogBox

init() - Method in class mgui.io.foreign.minc.MincSurfaceDataOutDialogBox

init() - Method in class mgui.io.standard.gifti.GiftiSurfaceOutDialogBox

init() - Method in class mgui.models.dynamic.functions.Function

init() - Method in class mgui.models.dynamic.functions.HardLimitFunction

init() - Method in class mgui.models.dynamic.functions.SigmoidFunction

init() - Method in class mgui.models.networks.AbstractNetwork

init() - Method in class mgui.models.updaters.LinearUpdater

init() - Method in class mgui.models.updaters.PulseTrainUpdater.CurrentPulse

init() - Method in class mgui.models.updaters.PulseTrainUpdater

init() - Method in class mgui.models.updaters.SimpleEnvironmentUpdater

init() - Method in class mgui.morph.sections.InterfaceMorphPanel

init() - Method in class mgui.morph.sections.InterfaceMorphPanel2

init() - Method in class mgui.morph.sections.InterfaceRadialRep

init() - Method in class mgui.morph.sections.InterfaceRadialRep2

init() - Method in class mgui.morph.sections.MorphSections3DInt

init() - Method in class mgui.neuro.components.AbstractAxon

init() - Method in class mgui.neuro.components.AbstractDendrite

init() - Method in class mgui.neuro.components.AbstractDendrites

init() - Method in class mgui.neuro.components.AbstractNeuroComponent

init() - Method in class mgui.neuro.components.AbstractNeuron

init() - Method in class mgui.neuro.components.compartments.AbstractCompartment

init() - Method in class mgui.neuro.components.compartments.CompartmentalComponent

init() - Method in class mgui.neuro.components.compartments.CompartmentalDendrite

init() - Method in class mgui.neuro.components.compartments.SimpleCompartment

init() - Method in class mgui.neuro.components.cortical.AbstractCorticalConnection

init() - Method in class mgui.neuro.components.cortical.AbstractCorticalRegion

init() - Method in class mgui.neuro.components.cortical.functions.BiexponentialFunction

init() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction

init() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalOutput

init() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion

init() - Method in class mgui.neuro.components.simple.SimpleAxon

init() - Method in class mgui.neuro.components.simple.SimpleDendrite

init() - Method in class mgui.neuro.components.simple.SimpleMotorNeuron

init() - Method in class mgui.neuro.components.simple.SimpleSensoryNeuron

init() - Method in class mgui.neuro.components.simple.SimpleSoma

init() - Method in class mgui.neuro.components.simple.SimpleSynapse

init() - Method in class mgui.neuro.graphs.CorticalNetworkGraph

init() - Method in class mgui.neuro.graphs.NeuralNetGraph

init() - Static method in class mgui.neuro.imaging.camino.CaminoFunctions

init() - Static method in class mgui.neuro.imaging.camino.CaminoProcesses

init() - Method in class mgui.neuro.networks.AbstractNeuralNet

init() - Method in class mgui.neuro.networks.CorticalNetwork

init() - Method in class mgui.neuro.updaters.PulseTrainUpdater.CurrentPulse

init() - Method in class mgui.neuro.updaters.PulseTrainUpdater

init() - Method in class mgui.util.IDFactory

init(File, boolean) - Method in class mgui.io.standard.nifti.NiftiVolumeLoader

init(String) - Method in class mgui.interfaces.frames.SessionFrame

init(InterfaceFrame, String) - Static method in class mgui.interfaces.InterfaceEnvironment

Initiate environment from a specified init file.

init_attribute_table() - Method in class mgui.interfaces.datasources.DataSourceDriverDialogBox

init_file - Static variable in class mgui.interfaces.InterfaceEnvironment

init_file - Variable in class mgui.interfaces.startup.InitFrame

init_once - Variable in class mgui.interfaces.graphics.InterfaceGraphic

init2() - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource

init2() - Method in class mgui.io.foreign.caret.CaretMetricInDialogBox

init2() - Method in class mgui.io.foreign.caret.CaretPaintInDialogBox

initCombos() - Method in class mgui.io.domestic.variables.MatrixInDialogBox

initControls() - Method in class mgui.io.domestic.network.CorticalNetworkMatrixInDialogBox

initDataItems() - Method in class mgui.io.domestic.datasources.ExportDataTableDialogBox

initDataSources() - Method in class mgui.io.domestic.datasources.ExportDataTableDialogBox

InitFrame - Class in mgui.interfaces.startup

Frame which allows the user to select an init file on start-up.

InitFrame(InitListener) - Constructor for class mgui.interfaces.startup.InitFrame

initFromFile(String) - Static method in class mgui.neuro.imaging.camino.CaminoEnvironment

initial_radius - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions

initialize() - Method in class mgui.interfaces.graphs.layouts.Coordinate3DLayout

initialize() - Method in class mgui.interfaces.graphs.layouts.CoordinateLayout

initialize() - Method in class mgui.interfaces.maps.Camera3DLight

initialize() - Method in class mgui.interfaces.shapes.graphs.util.Graph2DLayout

initialize() - Method in class mgui.interfaces.tools.MouseBehavior

initialized - Variable in class mgui.interfaces.graphs.layouts.Coordinate3DLayout

InitListener - Interface in mgui.interfaces.startup

initOperations() - Method in class mgui.interfaces.shapes.InterfaceShapesPanel

initOSType() - Static method in class mgui.interfaces.InterfaceEnvironment

Initialize the environment

initOutputTypes() - Method in class mgui.io.domestic.datasources.ExportDataTableDialogBox

initPanel() - Method in class mgui.interfaces.queries.QueryResultPanel

initParameters() - Method in class mgui.pipelines.PipelineProcessInstance

initPlot(T) - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout

initPlot(T) - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout

Initiates the plot using the given initial data object.

initRange(T) - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout

Initiates this plot's range based upon its first data object.

initRange(T) - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout

Initiates this plot's range based upon its first data object.

initSourceTree() - Method in class mgui.interfaces.plots.InterfacePlotDialog

initTable() - Method in class mgui.io.domestic.maps.NameMapOutDialogBox

initValidatePanels() - Method in class mgui.interfaces.shapes.mesh.InterfaceMeshPanel

initVolumeSetTable() - Method in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel

input - Variable in class mgui.neuro.components.cortical.AbstractCorticalInput

input - Variable in class mgui.neuro.components.cortical.simple.SimpleCorticalInputEvent

input - Variable in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion

Input - mgui.interfaces.io.InterfaceFilePanel.Command

INPUT - Static variable in class mgui.io.foreign.caret.CaretMetricOptionsDialog

input_column - Variable in class mgui.io.domestic.shapes.VolumeInputOptions

INPUT_CONST - Static variable in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old

INPUT_DATA - Static variable in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old

input_data_source - Variable in class mgui.models.environments.SimpleEnvironment

input_file - Static variable in class mgui.neuro.imaging.camino.CaminoFunctions

input_file - Variable in class mgui.pipelines.PipelineProcessInstance

input_file - Variable in class mgui.pipelines.PipelineState

Input_file - mgui.interfaces.io.InterfaceFilePanel.Command

Input_file_type - mgui.interfaces.io.InterfaceFilePanel.Command

input_names - Variable in class mgui.models.environments.SimpleEnvironment

Input_opt - mgui.interfaces.io.InterfaceFilePanel.Command

input_parameter - Variable in class mgui.pipelines.PipelineProcess

input_streams - Variable in class mgui.interfaces.InterfaceWorkspace

input_type - Variable in class mgui.io.domestic.shapes.VolumeInputOptions

inputChannel - Variable in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old

inputFactor - Variable in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old

inputFile - Variable in class mgui.io.DataFileInterface

Deprecated.

inputListeners - Variable in class mgui.interfaces.io.DataBridge

inputOp - Variable in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old

inputs - Variable in class mgui.interfaces.plots.InterfacePlot

inputs - Variable in class mgui.neuro.networks.AbstractNeuralNet

inputState - Variable in class mgui.models.environments.SimpleEnvironment

inputType - Variable in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old

inputType - Variable in class mgui.io.foreign.vol.VolumeInputOptions

inputValue - Variable in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old

insert(int, InterfacePipeline) - Method in class mgui.pipelines.PipelineFork

insert(int, PipelineTask) - Method in class mgui.pipelines.InterfacePipeline

Insert - mgui.interfaces.tools.graphs.ToolGraphImage.Type

insert_at - Variable in class mgui.interfaces.trees.TreeEvent

insertBefore(PipelineTask, PipelineTask) - Method in class mgui.pipelines.InterfacePipeline

Insert existing_task before new_task.

insertChild(InterfaceTreeNode, int) - Method in class mgui.interfaces.trees.InterfaceTreeNode

insertPaintable(VisualizationServer.Paintable) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay

insertParameter(TaskParameter, int) - Method in class mgui.pipelines.PipelineProcess

insertShape3D(Shape2DInt) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D

insertTempShape(Shape2DInt) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D

Insert a temporary shape at the top of the stack (renders last)

insertTempShape(Shape2DInt, int) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D

Insert a temporary shape at pos in the stack

insertUpdate(DocumentEvent) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel

insertUpdate(DocumentEvent) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel

inside(Point3d) - Method in class au.edu.unsw.cse.Edge3d

inside(Point3d) - Method in class au.edu.unsw.cse.HalfSpace

inside(Point3d) - Method in class au.edu.unsw.cse.Triangle3d

instance - Variable in class mgui.pipelines.InterfacePipeline

instance - Variable in class mgui.pipelines.PipelineLauncher

instance - Variable in class mgui.pipelines.PipelineProcessInstance

instance_clock_start - Variable in class mgui.command.CommandInterpreter

instance_prefix - Variable in class mgui.interfaces.projects.InterfaceProjectOptions

instance_state - Variable in class mgui.command.CommandInterpreter

instance_suffix - Variable in class mgui.interfaces.projects.InterfaceProjectOptions

instance_timer - Variable in class mgui.command.CommandInstance

instances - Variable in class mgui.interfaces.projects.InterfaceProjectOptions

Instruction - Class in mgui.io.standard.xml.svg

Instruction(SVGParser.Mode, int) - Constructor for class mgui.io.standard.xml.svg.Instruction

instructions - Variable in class mgui.io.standard.xml.svg.SVGPath

INT_CURRENT_ZOOM - Static variable in class mgui.interfaces.graphics.InterfaceGraphic2DTextBox

INT_MOUSE_EVENT - Static variable in class mgui.interfaces.graphics.InterfaceGraphic2DTextBox

INT_SOURCE_NAME - Static variable in class mgui.interfaces.graphics.InterfaceGraphic2DTextBox

INT_TOOL_TYPE - Static variable in class mgui.interfaces.graphics.InterfaceGraphic2DTextBox

Integer - mgui.io.domestic.shapes.ShapeDataInputOptions.Format

Integer - mgui.io.domestic.shapes.SurfaceDataInputOptions.DataType

INTEGER - Static variable in class mgui.datasources.DataTypes

integerNodes - Variable in class mgui.interfaces.shapes.IntPolygon2DInt

integrateTransforms() - Method in class mgui.interfaces.tools.ToolBehavior3DAdapter

intent - Variable in class mgui.io.standard.nifti.Nifti1Dataset

intent_code - Variable in class mgui.io.standard.nifti.Nifti1Dataset

intent_name - Variable in class mgui.io.standard.nifti.Nifti1Dataset

intercept - Variable in class mgui.image.util.WindowedColourModel

intercept - Variable in class mgui.io.domestic.shapes.VolumeInputOptions

intercept - Variable in class mgui.io.domestic.shapes.VolumeOutputOptions

InterfaceAbstractGraph - Class in mgui.interfaces.graphs

Abstract representation of a Graph in modelGUI; extends Jung's SparseGraph

InterfaceAbstractGraph() - Constructor for class mgui.interfaces.graphs.InterfaceAbstractGraph

InterfaceAbstractModel - Class in mgui.interfaces.models

InterfaceAbstractModel() - Constructor for class mgui.interfaces.models.InterfaceAbstractModel

InterfaceAttributePanel - Class in mgui.interfaces.attributes

Panel to display and modify a given AttributeList.

InterfaceAttributePanel() - Constructor for class mgui.interfaces.attributes.InterfaceAttributePanel

InterfaceAttributePanel(AttributeList) - Constructor for class mgui.interfaces.attributes.InterfaceAttributePanel

InterfaceAttributePanel(AttributeObject) - Constructor for class mgui.interfaces.attributes.InterfaceAttributePanel

InterfaceAttributeTable - Class in mgui.interfaces.attributes.table

An extension of JTable to display an AttributeList in tabular format.

InterfaceAttributeTable() - Constructor for class mgui.interfaces.attributes.table.InterfaceAttributeTable

InterfaceAttributeTable(AttributeList) - Constructor for class mgui.interfaces.attributes.table.InterfaceAttributeTable

InterfaceAttributeTable(AttributeTableModel) - Constructor for class mgui.interfaces.attributes.table.InterfaceAttributeTable

InterfaceButton - Class in mgui.interfaces

InterfaceButton() - Constructor for class mgui.interfaces.InterfaceButton

InterfaceButton(String, Tool) - Constructor for class mgui.interfaces.InterfaceButton

InterfaceButtonPanel - Class in mgui.interfaces

Interface panel displaying a list of tool-related buttons.

InterfaceButtonPanel() - Constructor for class mgui.interfaces.InterfaceButtonPanel

InterfaceCaminoPanel - Class in mgui.interfaces.neuro.imaging.camino

InterfaceCaminoPanel() - Constructor for class mgui.interfaces.neuro.imaging.camino.InterfaceCaminoPanel

InterfaceCanvas3D - Class in mgui.interfaces.graphics

Acts as an InterfaceGraphic wrapper for the Canvas3D object, to enable mouse handling which passes the correct source panel (set here as ).

InterfaceCanvas3D(GraphicsConfiguration) - Constructor for class mgui.interfaces.graphics.InterfaceCanvas3D

InterfaceCanvas3D(Canvas3D) - Constructor for class mgui.interfaces.graphics.InterfaceCanvas3D

InterfaceCoCoMacPanel - Class in mgui.interfaces.cocomac

InterfaceCoCoMacPanel() - Constructor for class mgui.interfaces.cocomac.InterfaceCoCoMacPanel

InterfaceComboBox - Class in mgui.interfaces.gui

Combo box which implements a variable width popup, which depends on the render mode and the length of its items:

InterfaceComboBox() - Constructor for class mgui.interfaces.gui.InterfaceComboBox

Constructor for this combo box, with default parameters

InterfaceComboBox(Object[]) - Constructor for class mgui.interfaces.gui.InterfaceComboBox

InterfaceComboBox(Vector) - Constructor for class mgui.interfaces.gui.InterfaceComboBox

InterfaceComboBox(ComboBoxModel) - Constructor for class mgui.interfaces.gui.InterfaceComboBox

InterfaceComboBox(InterfaceComboBox.RenderMode, boolean, int) - Constructor for class mgui.interfaces.gui.InterfaceComboBox

Constructor for this combo box

InterfaceComboBox(InterfaceComboBox.RenderMode, boolean, int, boolean) - Constructor for class mgui.interfaces.gui.InterfaceComboBox

Constructor for this combo box

InterfaceComboBox(InterfaceComboBox.RenderMode, boolean, int, Icon) - Constructor for class mgui.interfaces.gui.InterfaceComboBox

Constructor for this combo box

InterfaceComboBox(InterfaceComboBox.RenderMode, boolean, int, Icon, boolean) - Constructor for class mgui.interfaces.gui.InterfaceComboBox

Constructor for this combo box

InterfaceComboBox(InterfaceComboBox.RenderMode, boolean, int, Transformer<Object, String>) - Constructor for class mgui.interfaces.gui.InterfaceComboBox

Constructor for this combo box

InterfaceComboBox(InterfaceComboBox.RenderMode, boolean, int, Transformer<Object, String>, Icon) - Constructor for class mgui.interfaces.gui.InterfaceComboBox

Constructor for this combo box

InterfaceComboBox.RenderMode - Enum in mgui.interfaces.gui

InterfaceComboBoxBak - Class in mgui.interfaces.gui

Extends JComboBox to provide fixed- or variable-width dropdown lists, as well as the ability to display icons.

InterfaceComboBoxBak() - Constructor for class mgui.interfaces.gui.InterfaceComboBoxBak

InterfaceComboBoxBak(InterfaceComboBoxBak.RenderMode) - Constructor for class mgui.interfaces.gui.InterfaceComboBoxBak

InterfaceComboBoxBak(InterfaceComboBoxBak.RenderMode, int, int, boolean) - Constructor for class mgui.interfaces.gui.InterfaceComboBoxBak

InterfaceComboBoxBak.RenderMode - Enum in mgui.interfaces.gui

InterfaceComboBoxRenderer - Class in mgui.interfaces.gui

Renderer for InterfaceComboBox.

InterfaceComboBoxRenderer() - Constructor for class mgui.interfaces.gui.InterfaceComboBoxRenderer

InterfaceComboBoxRenderer(boolean) - Constructor for class mgui.interfaces.gui.InterfaceComboBoxRenderer

InterfaceComboBoxRenderer(boolean, Transformer<Object, String>) - Constructor for class mgui.interfaces.gui.InterfaceComboBoxRenderer

InterfaceComboBoxRenderer(boolean, Transformer<Object, String>, Icon) - Constructor for class mgui.interfaces.gui.InterfaceComboBoxRenderer

InterfaceComboPanel - Class in mgui.interfaces

Interface panel allowing for the display of multiple interface panels, selected by a combo box.

InterfaceComboPanel() - Constructor for class mgui.interfaces.InterfaceComboPanel

InterfaceConsoleDisplay - Class in mgui.interfaces.console

Window which displays console output.

InterfaceConsoleDisplay() - Constructor for class mgui.interfaces.console.InterfaceConsoleDisplay

InterfaceCorticalThicknessPanel - Class in mgui.interfaces.neuro

Panel providing an interface to cortical thickness databases and subject databases.

InterfaceCorticalThicknessPanel() - Constructor for class mgui.interfaces.neuro.InterfaceCorticalThicknessPanel

InterfaceDataSensor<T extends MguiNumber> - Interface in mgui.interfaces.io

Represents an entity which senses changes to an input stream.

InterfaceDataSource<T extends MguiNumber> - Interface in mgui.interfaces.io

Represents a source of data; i.e., an entity which emits discretized (presampled) signals.

InterfaceDatasourcePanel - Class in mgui.interfaces.datasources

Interface panel for displaying, querying, and managing tables and queries in a connected data source.

InterfaceDatasourcePanel() - Constructor for class mgui.interfaces.datasources.InterfaceDatasourcePanel

InterfaceDataSourceTimeSeries<T extends MguiNumber> - Interface in mgui.interfaces.io

Represents an XY signal source with multiple Y channels.

InterfaceDataSourceXY<T extends MguiNumber> - Interface in mgui.interfaces.io

XY data source with unique X-Y pairs.

InterfaceDataTable - Class in mgui.interfaces.tables

Interface panel for displaying a data table or query.

InterfaceDataTable() - Constructor for class mgui.interfaces.tables.InterfaceDataTable

InterfaceDataTableTitle - Class in mgui.interfaces.tables

InterfaceDataTableTitle() - Constructor for class mgui.interfaces.tables.InterfaceDataTableTitle

InterfaceDataTableTitle(InterfaceDataTable) - Constructor for class mgui.interfaces.tables.InterfaceDataTableTitle

InterfaceDialogBox - Class in mgui.interfaces

Interface class acting as a general dialog box that can be extended and designed using the protected init() method and the actionPerformed method implementing the ActionListener interface.

InterfaceDialogBox() - Constructor for class mgui.interfaces.InterfaceDialogBox

InterfaceDialogBox(JFrame) - Constructor for class mgui.interfaces.InterfaceDialogBox

InterfaceDialogBox(JFrame, boolean) - Constructor for class mgui.interfaces.InterfaceDialogBox

InterfaceDialogBox(JFrame, InterfaceDialogUpdater) - Constructor for class mgui.interfaces.InterfaceDialogBox

Deprecated.

InterfaceDialogUpdater - Interface in mgui.interfaces

InterfaceDisplayPanel - Class in mgui.interfaces

Main interface panel for displaying data graphically.

InterfaceDisplayPanel(SessionFrame) - Constructor for class mgui.interfaces.InterfaceDisplayPanel

InterfaceDynamicModelPanel - Class in mgui.interfaces.models

InterfaceDynamicModelPanel() - Constructor for class mgui.interfaces.models.InterfaceDynamicModelPanel

InterfaceEnvironment - Class in mgui.interfaces

Stores environmental variables and provides static methods to retrieve them.

InterfaceEnvironment() - Constructor for class mgui.interfaces.InterfaceEnvironment

InterfaceEnvironment.OsType - Enum in mgui.interfaces

InterfaceEnvironment.Snapshot3DMode - Enum in mgui.interfaces

InterfaceFile - Class in mgui.interfaces.io

InterfaceFile(File) - Constructor for class mgui.interfaces.io.InterfaceFile

InterfaceFile(File, FileFilter) - Constructor for class mgui.interfaces.io.InterfaceFile

InterfaceFilePanel - Class in mgui.interfaces.io

InterfacePanel providing a standard interface for input & output operations.

InterfaceFilePanel() - Constructor for class mgui.interfaces.io.InterfaceFilePanel

InterfaceFilePanel.Command - Enum in mgui.interfaces.io

InterfaceFrame - Class in mgui.interfaces

Abstract class to be extended by all frames which contain an InterfaceDisplayPanel.

InterfaceFrame() - Constructor for class mgui.interfaces.InterfaceFrame

InterfaceFunctions - Class in mgui.interfaces.util

Utility class for interface objects.

InterfaceFunctions() - Constructor for class mgui.interfaces.util.InterfaceFunctions

InterfaceGraph - mgui.io.domestic.graphs.GraphInputOptions.GraphLoadType

InterfaceGraphDisplay - Class in mgui.interfaces.graphs

Displays graphs and allows user interaction with them.

InterfaceGraphDisplay() - Constructor for class mgui.interfaces.graphs.InterfaceGraphDisplay

InterfaceGraphDisplay(InterfaceAbstractGraph, String) - Constructor for class mgui.interfaces.graphs.InterfaceGraphDisplay

InterfaceGraphDisplayTitle - Class in mgui.interfaces.graphs

InterfaceGraphDisplayTitle() - Constructor for class mgui.interfaces.graphs.InterfaceGraphDisplayTitle

InterfaceGraphDisplayTitle(InterfaceGraphDisplay) - Constructor for class mgui.interfaces.graphs.InterfaceGraphDisplayTitle

InterfaceGraphEvent - Class in mgui.interfaces.graphs

InterfaceGraphEvent(InterfaceAbstractGraph, int) - Constructor for class mgui.interfaces.graphs.InterfaceGraphEvent

InterfaceGraphic<T extends Tool> - Class in mgui.interfaces.graphics

The base class for all graphical interface windows.

InterfaceGraphic() - Constructor for class mgui.interfaces.graphics.InterfaceGraphic

InterfaceGraphic.GraphicType - Enum in mgui.interfaces.graphics

InterfaceGraphic2D - Class in mgui.interfaces.graphics

Graphical interface window for display 2D shapes (Shape2DInt).

InterfaceGraphic2D() - Constructor for class mgui.interfaces.graphics.InterfaceGraphic2D

Instantiate and initialize a new 2D graphics window.

InterfaceGraphic2D(String) - Constructor for class mgui.interfaces.graphics.InterfaceGraphic2D

Instantiate and initialize a new 2D graphics window called name.

InterfaceGraphic2DTextBox - Class in mgui.interfaces.graphics

Status text box for a Graphic2D window.

InterfaceGraphic2DTextBox() - Constructor for class mgui.interfaces.graphics.InterfaceGraphic2DTextBox

InterfaceGraphic2DTextBox(String) - Constructor for class mgui.interfaces.graphics.InterfaceGraphic2DTextBox

InterfaceGraphic2DTextBox(String, int) - Constructor for class mgui.interfaces.graphics.InterfaceGraphic2DTextBox

InterfaceGraphic3D - Class in mgui.interfaces.graphics

Interface class for Java3D display.

InterfaceGraphic3D() - Constructor for class mgui.interfaces.graphics.InterfaceGraphic3D

InterfaceGraphic3D(String) - Constructor for class mgui.interfaces.graphics.InterfaceGraphic3D

InterfaceGraphic3D(ShapeModel3D) - Constructor for class mgui.interfaces.graphics.InterfaceGraphic3D

InterfaceGraphicListener - Interface in mgui.interfaces.graphics

Specifies a listener on InterfaceGraphic objects.

InterfaceGraphicPanel - Class in mgui.interfaces.graphics

Panel to define the display windows in InterfaceDisplayPanel, including: 1.

InterfaceGraphicPanel() - Constructor for class mgui.interfaces.graphics.InterfaceGraphicPanel

InterfaceGraphicPanel.GraphicWindowListEditor - Class in mgui.interfaces.graphics

InterfaceGraphicPanel.GraphicWindowListRenderer - Class in mgui.interfaces.graphics

InterfaceGraphicTextBox - Class in mgui.interfaces.graphics

Represents a labelled text box which updates from mouse movement events on its registered InterfaceGraphic components.

InterfaceGraphicTextBox() - Constructor for class mgui.interfaces.graphics.InterfaceGraphicTextBox

InterfaceGraphicTextBox(String) - Constructor for class mgui.interfaces.graphics.InterfaceGraphicTextBox

InterfaceGraphicWindow - Class in mgui.interfaces.graphics

Provides a title for an InterfaceGraphic window, which is a button.

InterfaceGraphicWindow() - Constructor for class mgui.interfaces.graphics.InterfaceGraphicWindow

InterfaceGraphicWindow(InterfaceGraphic<?>) - Constructor for class mgui.interfaces.graphics.InterfaceGraphicWindow

InterfaceGraphicWindow.GraphicButton - Class in mgui.interfaces.graphics

Button to display window title; overrides UI delegate.

InterfaceGraphListener - Interface in mgui.interfaces.graphs

InterfaceHideablePanel - Class in mgui.interfaces

InterfaceHideablePanel() - Constructor for class mgui.interfaces.InterfaceHideablePanel

InterfaceHideablePanel(InterfacePanel) - Constructor for class mgui.interfaces.InterfaceHideablePanel

InterfaceIO - Interface in mgui.io

Interface for all classes performing I/O operations.

InterfaceIODialogBox - Class in mgui.interfaces.io

Base class for all dialog boxes for specifying I/O options.

InterfaceIODialogBox() - Constructor for class mgui.interfaces.io.InterfaceIODialogBox

InterfaceIODialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.interfaces.io.InterfaceIODialogBox

InterfaceIOException - Exception in mgui.io

InterfaceIOException(String) - Constructor for exception mgui.io.InterfaceIOException

InterfaceIOOptions - Class in mgui.io

Extends InterfaceOptions specifically for I/O methods.

InterfaceIOOptions() - Constructor for class mgui.io.InterfaceIOOptions

InterfaceIOPanel - Interface in mgui.io

Interface for all panels performing IO operations involving InterfaceDialogBox.

InterfaceIOType - Class in mgui.interfaces.io

Specifies an Input/Output interface object; e.g., file loaders or writers.

InterfaceIOType() - Constructor for class mgui.interfaces.io.InterfaceIOType

InterfaceLayoutFrame - Class in mgui.interfaces.layouts

Frame to display a print layout window

InterfaceLayoutFrame(InterfaceLayoutPanel, String, Dimension) - Constructor for class mgui.interfaces.layouts.InterfaceLayoutFrame

InterfaceLayoutPanel - Class in mgui.interfaces.layouts

Interface panel allowing interaction with a 2D Layout object.

InterfaceLayoutPanel() - Constructor for class mgui.interfaces.layouts.InterfaceLayoutPanel

InterfaceLayoutWindow - Class in mgui.interfaces.layouts

Provides a window panel which specifies (via InterfaceLayoutObject) and renders a layout containing graphical objects from existing windows or objects.

InterfaceLayoutWindow() - Constructor for class mgui.interfaces.layouts.InterfaceLayoutWindow

InterfaceLayoutWindow(String) - Constructor for class mgui.interfaces.layouts.InterfaceLayoutWindow

InterfaceListPanel - Class in mgui.interfaces

InterfaceListPanel() - Constructor for class mgui.interfaces.InterfaceListPanel

InterfaceMapPanel - Class in mgui.interfaces.maps

Panel to create and modify various maps, including colour maps and value maps.

InterfaceMapPanel() - Constructor for class mgui.interfaces.maps.InterfaceMapPanel

InterfaceMenu - Class in mgui.interfaces.menus

InterfaceMenu(String, PopupMenuObject) - Constructor for class mgui.interfaces.menus.InterfaceMenu

InterfaceMenu(PopupMenuObject) - Constructor for class mgui.interfaces.menus.InterfaceMenu

InterfaceMeshPanel - Class in mgui.interfaces.shapes.mesh

Provides an interface to Mesh3DInt objects.

InterfaceMeshPanel() - Constructor for class mgui.interfaces.shapes.mesh.InterfaceMeshPanel

InterfaceMorphPanel - Class in mgui.morph.sections

InterfaceMorphPanel() - Constructor for class mgui.morph.sections.InterfaceMorphPanel

InterfaceMorphPanel2 - Class in mgui.morph.sections

InterfaceMorphPanel2() - Constructor for class mgui.morph.sections.InterfaceMorphPanel2

InterfaceMouseListener - Interface in mgui.interfaces

Mouse listener for InterfacePanel objects

InterfaceMouseObject - Interface in mgui.interfaces

InterfaceNetworkComponentListener - Interface in mgui.models.networks.components

InterfaceNetworkTreeNode - Class in mgui.interfaces.neuro

InterfaceNetworkTreeNode(AbstractNetwork) - Constructor for class mgui.interfaces.neuro.InterfaceNetworkTreeNode

InterfaceNeuralNetListener - Interface in mgui.interfaces.neuro

InterfaceNeuroAtlas - Class in mgui.interfaces.neuro

Defines an atlas mapping a set of data points to integers which map in turn to atlas names (via a name map).

InterfaceNeuroAtlas(String) - Constructor for class mgui.interfaces.neuro.InterfaceNeuroAtlas

InterfaceNeuroAtlas(String, ArrayList<MguiNumber>) - Constructor for class mgui.interfaces.neuro.InterfaceNeuroAtlas

InterfaceNeuroAtlas(String, ArrayList<MguiNumber>, NameMap) - Constructor for class mgui.interfaces.neuro.InterfaceNeuroAtlas

InterfaceNeuroComponentListener - Interface in mgui.interfaces.neuro

InterfaceNeuroMeshPanel - Class in mgui.interfaces.shapes.neuro

InterfaceNeuroMeshPanel() - Constructor for class mgui.interfaces.shapes.neuro.InterfaceNeuroMeshPanel

InterfaceNeuroMeshPanel2 - Class in mgui.interfaces.shapes.neuro

InterfaceNeuroMeshPanel2() - Constructor for class mgui.interfaces.shapes.neuro.InterfaceNeuroMeshPanel2

InterfaceNeuroTreeNode - Class in mgui.interfaces.neuro

InterfaceNeuroTreeNode(AbstractNeuroComponent) - Constructor for class mgui.interfaces.neuro.InterfaceNeuroTreeNode

InterfaceObject - Interface in mgui.interfaces

Basic interface for all "interface" objects; i.e., objects which provide an interface between the user and the underlying model.

InterfaceObjectListener - Interface in mgui.interfaces

Listener for all interface objects; currently only specifies a function for handling an object modification event.

InterfaceOptions - Class in mgui.interfaces

Base interface for specifying options or parameters for some process.

InterfaceOptions() - Constructor for class mgui.interfaces.InterfaceOptions

InterfaceOptionsDialogBox - Class in mgui.interfaces

Extension of InterfaceDialogBox which provides a constructor accepting an instance of InterfaceOptions as an argument, which should be used as a means to transfer information between the dialog and its parent.

InterfaceOptionsDialogBox() - Constructor for class mgui.interfaces.InterfaceOptionsDialogBox

InterfaceOptionsDialogBox(JFrame, InterfaceOptions) - Constructor for class mgui.interfaces.InterfaceOptionsDialogBox

InterfaceOptionsTabbedDialogBox - Class in mgui.interfaces

Extension of InterfaceOptionsDialogBox which allows for tabs.

InterfaceOptionsTabbedDialogBox() - Constructor for class mgui.interfaces.InterfaceOptionsTabbedDialogBox

InterfaceOptionsTabbedDialogBox(JFrame, InterfaceOptions) - Constructor for class mgui.interfaces.InterfaceOptionsTabbedDialogBox

InterfacePanel - Class in mgui.interfaces

Base class for all Swing panels (i.e., extensions of JPanel) to be show in an instance of InterfaceDisplayPanel.

InterfacePanel() - Constructor for class mgui.interfaces.InterfacePanel

InterfacePipeline - Class in mgui.pipelines

Represents a series of Tasks that are to be run sequentially, such that the output of a task becomes the input of the subsequent one.

InterfacePipeline() - Constructor for class mgui.pipelines.InterfacePipeline

InterfacePipeline(String) - Constructor for class mgui.pipelines.InterfacePipeline

InterfacePipeline(String, LinkedList<PipelineTask>) - Constructor for class mgui.pipelines.InterfacePipeline

InterfacePipelinesPanel - Class in mgui.interfaces.pipelines

Provides a GUI for: creating, viewing, modifying, deleting, and executing pipelines.

InterfacePipelinesPanel() - Constructor for class mgui.interfaces.pipelines.InterfacePipelinesPanel

InterfacePlot<T extends MguiNumber> - Class in mgui.interfaces.plots

Represents an abstract plot object.

InterfacePlot() - Constructor for class mgui.interfaces.plots.InterfacePlot

InterfacePlotDialog<T extends InterfacePlot<?>> - Class in mgui.interfaces.plots

Abstract class to be extended by all dialogs which define InterfacePlot objects.

InterfacePlotDialog() - Constructor for class mgui.interfaces.plots.InterfacePlotDialog

InterfacePlotDialog(JFrame, InterfacePlotOptions<T>) - Constructor for class mgui.interfaces.plots.InterfacePlotDialog

InterfacePlotDisplay - Class in mgui.interfaces.plots

General graphic interface for all plots.

InterfacePlotDisplay() - Constructor for class mgui.interfaces.plots.InterfacePlotDisplay

InterfacePlotDisplay(InterfacePlot<?>) - Constructor for class mgui.interfaces.plots.InterfacePlotDisplay

InterfacePlotMgui - Class in mgui.interfaces.plots.mgui

General class for displaying ModelGUI plots.

InterfacePlotMgui() - Constructor for class mgui.interfaces.plots.mgui.InterfacePlotMgui

InterfacePlotMulti - Class in mgui.interfaces.plots

Allows the display of multiple plots in a single InterfacePlot panel.

InterfacePlotMulti() - Constructor for class mgui.interfaces.plots.InterfacePlotMulti

InterfacePlotObject - Class in mgui.interfaces.plots

Abstract representation of a plottable object; allows objects to be represented generically as interface objects.

InterfacePlotObject() - Constructor for class mgui.interfaces.plots.InterfacePlotObject

InterfacePlotOptions<T extends InterfacePlot<?>> - Class in mgui.interfaces.plots

Options for a plot object.

InterfacePlotOptions() - Constructor for class mgui.interfaces.plots.InterfacePlotOptions

InterfacePlotOptions(T) - Constructor for class mgui.interfaces.plots.InterfacePlotOptions

InterfacePlotOsp - Class in mgui.interfaces.plots.osp

General class for displaying Open Source Physics (OSP) plots.

InterfacePlotOsp() - Constructor for class mgui.interfaces.plots.osp.InterfacePlotOsp

InterfacePlotPanel - Class in mgui.interfaces.plots

InterfacePlotPanel() - Constructor for class mgui.interfaces.plots.InterfacePlotPanel

InterfacePlotSgt<T extends SgtPlotObject<?>> - Class in mgui.interfaces.plots.sgt

Abstract class for displaying Scientific Graphics Toolkit (SGT) plots.

InterfacePlotSgt() - Constructor for class mgui.interfaces.plots.sgt.InterfacePlotSgt

InterfacePolygonPanel - Class in mgui.interfaces.shapes

InterfacePolygonPanel() - Constructor for class mgui.interfaces.shapes.InterfacePolygonPanel

InterfacePopupMenu - Class in mgui.interfaces.menus

InterfacePopupMenu(String, PopupMenuObject) - Constructor for class mgui.interfaces.menus.InterfacePopupMenu

InterfacePopupMenu(PopupMenuObject) - Constructor for class mgui.interfaces.menus.InterfacePopupMenu

InterfaceProgressBar - Class in mgui.interfaces.gui

Panel to be used as a progress bar for all operations which require one.

InterfaceProgressBar() - Constructor for class mgui.interfaces.gui.InterfaceProgressBar

InterfaceProgressBar(String) - Constructor for class mgui.interfaces.gui.InterfaceProgressBar

InterfaceProgressBar(String, int, int) - Constructor for class mgui.interfaces.gui.InterfaceProgressBar

InterfaceProgressBar(String, int, int, boolean) - Constructor for class mgui.interfaces.gui.InterfaceProgressBar

InterfaceProject - Class in mgui.interfaces.projects

Represents a modelGUI project, which specifies an organizational structure for persistent data related to a common project.

InterfaceProject() - Constructor for class mgui.interfaces.projects.InterfaceProject

InterfaceProject(String, File, String, String, boolean) - Constructor for class mgui.interfaces.projects.InterfaceProject

InterfaceProjectDialogBox - Class in mgui.interfaces.projects

Dialog for setting up or editing an InterfaceProject object.

InterfaceProjectDialogBox() - Constructor for class mgui.interfaces.projects.InterfaceProjectDialogBox

InterfaceProjectDialogBox(JFrame, InterfaceOptions) - Constructor for class mgui.interfaces.projects.InterfaceProjectDialogBox

InterfaceProjectOptions - Class in mgui.interfaces.projects

InterfaceProjectOptions() - Constructor for class mgui.interfaces.projects.InterfaceProjectOptions

InterfaceProjectOptions(InterfaceProject) - Constructor for class mgui.interfaces.projects.InterfaceProjectOptions

InterfaceProjectPanel - Class in mgui.interfaces.projects

Panel which provides a user interface for InterfaceProjects.

InterfaceProjectPanel() - Constructor for class mgui.interfaces.projects.InterfaceProjectPanel

InterfaceQuery - Class in mgui.interfaces.queries

Interface for a class which allows it to query a given InterfaceQueryObject.

InterfaceQuery() - Constructor for class mgui.interfaces.queries.InterfaceQuery

InterfaceQueryObject - Interface in mgui.interfaces.queries

Interface which specifies methods for querying an implementing object.

InterfaceQueryPanel - Class in mgui.interfaces.queries

Provides an interface for queries; selecting and launching query tools, displaying query results, etc.

InterfaceQueryPanel() - Constructor for class mgui.interfaces.queries.InterfaceQueryPanel

InterfaceRadialRep - Class in mgui.morph.sections

InterfaceRadialRep() - Constructor for class mgui.morph.sections.InterfaceRadialRep

InterfaceRadialRep(InterfaceDisplayPanel) - Constructor for class mgui.morph.sections.InterfaceRadialRep

InterfaceRadialRep2 - Class in mgui.morph.sections

InterfaceRadialRep2() - Constructor for class mgui.morph.sections.InterfaceRadialRep2

InterfaceRadialRep2(InterfaceDisplayPanel) - Constructor for class mgui.morph.sections.InterfaceRadialRep2

InterfaceSectionSetPanel - Class in mgui.interfaces.shapes

Updated version of InterfaceSectionSet that sets a current section set for a given Graphic2D window, and sets current sections for that window.

InterfaceSectionSetPanel() - Constructor for class mgui.interfaces.shapes.InterfaceSectionSetPanel

InterfaceSelectionPanel - Class in mgui.interfaces

Provides an interface for creating and managing shape selection sets.

InterfaceSelectionPanel() - Constructor for class mgui.interfaces.InterfaceSelectionPanel

InterfaceSelectionSet - Class in mgui.interfaces.shapes.selection

Interface panel providing user interaction with selection sets.

InterfaceSelectionSet() - Constructor for class mgui.interfaces.shapes.selection.InterfaceSelectionSet

InterfaceSession - Class in mgui.interfaces

This is the main entry point into the mgui application.

InterfaceSession() - Constructor for class mgui.interfaces.InterfaceSession

InterfaceShape - Class in mgui.interfaces.shapes

Abstract base class for all shape interfaces (ShapeInts).

InterfaceShape() - Constructor for class mgui.interfaces.shapes.InterfaceShape

InterfaceShape.VertexDataSet - Class in mgui.interfaces.shapes

InterfaceShapeLoader - Class in mgui.io.domestic.shapes

Abstract loader class for all loaders which load InterfaceShape objects.

InterfaceShapeLoader() - Constructor for class mgui.io.domestic.shapes.InterfaceShapeLoader

InterfaceShapeQuery - Class in mgui.interfaces.shapes.queries

Base class for all shape queries.

InterfaceShapeQuery(String) - Constructor for class mgui.interfaces.shapes.queries.InterfaceShapeQuery

InterfaceShapeQuery.QueryMode - Enum in mgui.interfaces.shapes.queries

InterfaceShapeQueryObject - Interface in mgui.interfaces.shapes.queries

Defines a query object for InterfaceShape instances.

InterfaceShapesPanel - Class in mgui.interfaces.shapes

Interface panel providing a GUI for general shape-related functions.

InterfaceShapesPanel() - Constructor for class mgui.interfaces.shapes.InterfaceShapesPanel

InterfaceShapesPanel.VertexSelectionTableModel - Class in mgui.interfaces.shapes

InterfaceShapeWriter - Class in mgui.io.domestic.shapes

General writer for an InterfaceShape object.

InterfaceShapeWriter() - Constructor for class mgui.io.domestic.shapes.InterfaceShapeWriter

InterfaceShapeXMLHandler - Class in mgui.io.domestic.shapes.xml

XML handler for an InterfaceShape object.

InterfaceShapeXMLHandler() - Constructor for class mgui.io.domestic.shapes.xml.InterfaceShapeXMLHandler

Empty constructor; shape must be set

InterfaceShapeXMLHandler(InterfaceShape) - Constructor for class mgui.io.domestic.shapes.xml.InterfaceShapeXMLHandler

Construct with a shape.

InterfaceSplitPanel - Class in mgui.interfaces

Displays two InterfaceGraphicWindows, split either horizontally or vertically.

InterfaceSplitPanel(int, InterfaceGraphicWindow, InterfaceGraphicWindow) - Constructor for class mgui.interfaces.InterfaceSplitPanel

InterfaceStatusBarPanel - Class in mgui.interfaces

Interface panel which acts as a status bar for a given instance of InterfaceFrame.

InterfaceStatusBarPanel() - Constructor for class mgui.interfaces.InterfaceStatusBarPanel

InterfaceStripChart - Class in mgui.interfaces.plots.osp

Displays an OSP StripChart; i.e., time vs.

InterfaceStripChart() - Constructor for class mgui.interfaces.plots.osp.InterfaceStripChart

InterfaceStripChart(String) - Constructor for class mgui.interfaces.plots.osp.InterfaceStripChart

InterfaceStripChart.Variable - Class in mgui.interfaces.plots.osp

InterfaceTabbedDialogBox - Class in mgui.interfaces

Extends InterfaceDialogBox to implement tabs.

InterfaceTabbedDialogBox(JFrame) - Constructor for class mgui.interfaces.InterfaceTabbedDialogBox

InterfaceTabbedDisplayPanel - Class in mgui.interfaces

This class extends InterfaceDisplayPanel in order to provide a tabbed window pane, similar to a typical web browser.

InterfaceTabbedDisplayPanel(SessionFrame) - Constructor for class mgui.interfaces.InterfaceTabbedDisplayPanel

InterfaceTableModel - Class in mgui.interfaces.tables

Abstract Table Model interface class.

InterfaceTableModel() - Constructor for class mgui.interfaces.tables.InterfaceTableModel

InterfaceTextBox - Class in mgui.interfaces

InterfaceTextBox() - Constructor for class mgui.interfaces.InterfaceTextBox

InterfaceTextBox(String) - Constructor for class mgui.interfaces.InterfaceTextBox

InterfaceTool2DPanel - Class in mgui.interfaces.tools

Deprecated.

InterfaceTool2DPanel() - Constructor for class mgui.interfaces.tools.InterfaceTool2DPanel

Deprecated.

InterfaceToolPanel - Class in mgui.interfaces.tools

Panel displaying buttons for various tools, categorized.

InterfaceToolPanel() - Constructor for class mgui.interfaces.tools.InterfaceToolPanel

InterfaceTransferable - Interface in mgui.interfaces.transfers

Extends Transferable to provide an interface which allows both transfers of, and transfers into, the underlying object.

InterfaceTree - Class in mgui.interfaces.trees

This class extends JTree by specializing for modelGUI.

InterfaceTree() - Constructor for class mgui.interfaces.trees.InterfaceTree

InterfaceTree(Object[]) - Constructor for class mgui.interfaces.trees.InterfaceTree

InterfaceTree(TreeModel) - Constructor for class mgui.interfaces.trees.InterfaceTree

InterfaceTree(TreeNode) - Constructor for class mgui.interfaces.trees.InterfaceTree

InterfaceTreeCellEditor - Class in mgui.interfaces.trees

InterfaceTreeCellEditor() - Constructor for class mgui.interfaces.trees.InterfaceTreeCellEditor

InterfaceTreeCellRenderer - Class in mgui.interfaces.trees

Renderer for instances of InterfaceObject.

InterfaceTreeCellRenderer() - Constructor for class mgui.interfaces.trees.InterfaceTreeCellRenderer

InterfaceTreeNode - Class in mgui.interfaces.trees

Base class for tree nodes representing ModelGUI objects (instances of InterfaceObject).

InterfaceTreeNode() - Constructor for class mgui.interfaces.trees.InterfaceTreeNode

InterfaceTreeNode(String) - Constructor for class mgui.interfaces.trees.InterfaceTreeNode

InterfaceTreeNode(InterfaceObject) - Constructor for class mgui.interfaces.trees.InterfaceTreeNode

InterfaceTreeNode(InterfaceObject, JTree) - Constructor for class mgui.interfaces.trees.InterfaceTreeNode

InterfaceTreePanel - Class in mgui.interfaces.trees

Provides a tree interface for model objects

InterfaceTreePanel() - Constructor for class mgui.interfaces.trees.InterfaceTreePanel

InterfaceTreeTable - Class in mgui.interfaces.trees

Provides an implementation for a tree/table combination.

InterfaceTreeTable(TreeTableModel) - Constructor for class mgui.interfaces.trees.InterfaceTreeTable

InterfaceTreeTable.TreeTableCellEditor - Class in mgui.interfaces.trees

InterfaceTreeTable.TreeTableCellRenderer - Class in mgui.interfaces.trees

interfaceType - Variable in class mgui.interfaces.graphics.InterfaceGraphic2DTextBox

interfaceType - Variable in class mgui.interfaces.shapes.selection.InterfaceSelectionSet

interfaceType - Variable in class mgui.interfaces.shapes.Text2DIntMouseCoords

InterfaceView3DObject - Interface in mgui.interfaces.graphics

InterfaceVolumePanel - Class in mgui.interfaces.shapes.volume

Interface panel which allows the user to interact with Volume3DInt objects.

InterfaceVolumePanel() - Constructor for class mgui.interfaces.shapes.volume.InterfaceVolumePanel

InterfaceVolumePanel.SliderTableColumn - Class in mgui.interfaces.shapes.volume

InterfaceVolumeSetPanel - Class in mgui.interfaces.shapes.volume

Panel to provide an interface with a volume overlay set.

InterfaceVolumeSetPanel() - Constructor for class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel

InterfaceVolumeSetPanel.AlphaSliderEditor - Class in mgui.interfaces.shapes.volume

InterfaceVolumeSetPanel.AlphaSliderRenderer - Class in mgui.interfaces.shapes.volume

InterfaceVolumeSetPanel.OverlayVolumeTableModel - Class in mgui.interfaces.shapes.volume

InterfaceWorkspace - Class in mgui.interfaces

A Workspace acts as a container for all data models and graphics windows.

InterfaceWorkspace() - Constructor for class mgui.interfaces.InterfaceWorkspace

InterfaceWorkspace.CollectionTreeNode - Class in mgui.interfaces

InterfileHeader() - Constructor for class mgui.io.foreign.interfile.InterfileLoader.InterfileHeader

InterfileLoader - Class in mgui.io.foreign.interfile

Loads volume data stored in Interfile format.

InterfileLoader() - Constructor for class mgui.io.foreign.interfile.InterfileLoader

InterfileLoader.InterfileHeader - Class in mgui.io.foreign.interfile

interpolate(double[], double[], double[], double[][][], ProgressUpdater) - Method in class mgui.geometry.volume.TricubicSplineInterpolaterUpdater

interpolate(double, double, double) - Static method in class mgui.util.MathFunctions

interpolate(Colour, Colour, double) - Static method in class mgui.util.Colours

Interpolate a colour between c1 and c2, and point iVal (0.0 to 1.0)

interrupt() - Method in class mgui.command.CommandInstance

Requests that the currently executing process terminate

interrupt() - Method in class mgui.pipelines.InterfacePipeline

interrupt() - Method in class mgui.pipelines.PipelineProcessInstance

interrupt() - Method in class mgui.pipelines.PipelineTask

Attempts to terminate the execution of this task, if it is started, and sets its status to Terminated.

interrupt(long) - Method in class mgui.pipelines.JavaProcess

interrupt(long) - Method in class mgui.pipelines.NativeProcess

interrupt(long) - Method in class mgui.pipelines.PipelineProcess

Interrupts an instance of this process

Interrupted - mgui.command.CommandFunctions.ProcessState

Interrupted - mgui.pipelines.PipelineTask.Status

intersects(Mesh3D, Point3f, Vector3f) - Static method in class mgui.geometry.mesh.MeshFunctions

Determines whether a vector defined by p and v intersects mesh.

intersects(Triangle3D, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions

Determines whether triangle intersects plane

intersects(Triangle3D, Triangle3D) - Static method in class mgui.geometry.util.GeometryFunctions

Determines whether tri1 and tri2 intersect.

intersects(Vector3D, Point3f) - Static method in class mgui.geometry.util.GeometryFunctions

Determines whether p intersects vector, within the tolerance set for this session instance (GeometryFunctions.error).

intersects(Vector3D, Point3f, double) - Static method in class mgui.geometry.util.GeometryFunctions

Determines whether p intersects vector, within the given tolerance.

intersects(Point3f, Vector3f, Triangle3D) - Static method in class mgui.geometry.util.GeometryFunctions

IntPolygon2DInt - Class in mgui.interfaces.shapes

IntPolygon2DInt() - Constructor for class mgui.interfaces.shapes.IntPolygon2DInt

IntPolygon2DInt(Polygon2D) - Constructor for class mgui.interfaces.shapes.IntPolygon2DInt

IntPolygon2DInt(Polygon2DInt) - Constructor for class mgui.interfaces.shapes.IntPolygon2DInt

intRect3D - Variable in class mgui.interfaces.shapes.Volume3DInt

intToByte(int) - Static method in class mgui.geometry.volume.VolumeFunctions

intToByteArray(int, ByteOrder) - Static method in class mgui.io.util.IoFunctions

Thanks to http://forum.java.sun.com/thread.jspa?threadID=609364&start=15&tstart=0 for this.

intToBytes(int) - Static method in class mgui.io.util.IoFunctions

Converts an int value to four bytes.

invalidate() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer

Overridden for performance reasons.

invalidateLayout(Container) - Method in class mgui.interfaces.layouts.LineLayout

InvalidValueClassException - Exception in mgui.interfaces.maps

InvalidValueClassException() - Constructor for exception mgui.interfaces.maps.InvalidValueClassException

inverse() - Method in class au.edu.unsw.cse.Quaternion

invert_x - Variable in class mgui.io.foreign.trackvis.TrackVisTractHeader

invert_y - Variable in class mgui.io.foreign.trackvis.TrackVisTractHeader

invert_z - Variable in class mgui.io.foreign.trackvis.TrackVisTractHeader

invertData - Variable in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old

invertMask(String) - Method in class mgui.interfaces.shapes.Volume3DInt

invertMax - Variable in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old

invertMin - Variable in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old

invertShape - Variable in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old

io - Variable in class mgui.interfaces.io.InterfaceIOType

io_objects - Variable in class mgui.interfaces.io.InterfaceIODialogBox

io_options - Variable in class mgui.io.standard.xml.XMLOutputOptions

io_panel - Variable in class mgui.interfaces.io.InterfaceIODialogBox

IoFunctions - Class in mgui.io.util

Utility class which provides functions for common I/O operations.

IoFunctions() - Constructor for class mgui.io.util.IoFunctions

IoFunctions.FileType - Enum in mgui.io.util

ioTypes - Variable in class mgui.interfaces.io.InterfaceFilePanel

is_active - Variable in class mgui.interfaces.tools.graphics.Tool2D

is_adjustable - Variable in class mgui.interfaces.stats.HistogramPlot

is_auxiliary - Variable in class mgui.interfaces.shapes.InterfaceShape

is_cached - Variable in class mgui.interfaces.datasources.DataTableModel

is_cancelled - Variable in class mgui.interfaces.gui.AbstractProgressUpdater

is_destroyed - Variable in class mgui.interfaces.plots.sgt.SgtPlotLayout

is_destroyed - Variable in class mgui.interfaces.startup.InitFrame

is_destroyed - Variable in class mgui.neuro.imaging.camino.CaminoTaskTreeNode

is_discrete - Variable in class mgui.image.util.WindowedColourModel

is_fillable - Variable in class mgui.geometry.util.NodeShape

is_finished - Variable in class mgui.io.domestic.shapes.xml.ShapeSet3DXMLHandler

is_indeterminate - Variable in class mgui.interfaces.gui.AbstractProgressUpdater

is_interrupted - Variable in class mgui.command.CommandInstance

is_interrupted - Variable in class mgui.pipelines.JavaProcess

is_live3d - Variable in class mgui.interfaces.shapes.ShapeModel3D

is_masked(int, int) - Method in class mgui.interfaces.shapes.util.GridSampleModel

added Andrew Reid

is_new_record - Variable in class mgui.interfaces.datasources.DataTableModel

is_nifti - Variable in class mgui.io.standard.nifti.NiftiVolumeLoader

is_ok - Variable in class mgui.interfaces.pipelines.PipelineProcessInstanceDialogBox

is_ok - Variable in class mgui.io.domestic.datasources.ExportDataTableDialogBox

is_ok - Variable in class mgui.io.domestic.datasources.ImportDataTableDialogBox

is_registered - Variable in class mgui.interfaces.shapes.InterfaceShape

is_snapshot - Variable in class mgui.interfaces.graphics.InterfaceGraphic

is_solid - Variable in class mgui.image.util.WindowedColourModel

is_thread_caching - Variable in class mgui.interfaces.datasources.DataTableModel

is_vertex_data - Variable in class mgui.io.domestic.shapes.xml.InterfaceShapeXMLHandler

isAbovePlane(Point3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions

Deprecated.

use compareToPlane

isActive() - Method in class au.edu.unsw.cse.FakeAppletStub

isActive(double, double) - Method in class mgui.models.updaters.PulseTrainUpdater.CurrentPulse

isActive(double, double) - Method in class mgui.neuro.updaters.PulseTrainUpdater.CurrentPulse

isActive(long) - Method in class mgui.interfaces.graphics.video.VideoTask

isAddNew - Variable in class mgui.datasources.DataRecordSet

isAdjacent(Mesh3D.MeshFace3D) - Method in class mgui.geometry.Mesh3D.MeshFace3D

Determines whether face shares at least one edge (two vertices) with this face.

isAncestorSet(ShapeSet) - Method in class mgui.interfaces.shapes.SectionSet3DInt

isAncestorSet(ShapeSet) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet

isAncestorSet(ShapeSet) - Method in interface mgui.interfaces.shapes.ShapeSet

Determines whether set is an ancestor set of this set; i.e., whether this set is a subset of set.

isAncestorSet(ShapeSet) - Method in class mgui.interfaces.shapes.ShapeSet2DInt

Determines whether set is an ancestor of this set.

isAncestorSet(ShapeSet) - Method in class mgui.interfaces.shapes.ShapeSet3DInt

Determines whether set is an ancestor of this set.

isAssignableFrom(ReifiedArrayList<E>) - Method in class mgui.collections.ReifiedArrayList

isAutoBackClip() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D

isAutoRange() - Method in class mgui.interfaces.plots.sgt.SgtAxis

Indicates whether this axis automatically adjusts its range to its data.

isAutoRangeX() - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout

Indicates whether this layout automatically adjusts its X range to its X data.

isAutoRangeY() - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout

Indicates whether this layout automatically adjusts its Y range to its Y data.

isAuxiliaryShape() - Method in class mgui.interfaces.shapes.InterfaceShape

CORE ATTRIBUTES

isAuxiliaryShape(boolean) - Method in class mgui.interfaces.shapes.InterfaceShape

isBadFace(Mesh3D.MeshFace3D) - Static method in class mgui.geometry.mesh.MeshFunctions

isBoolean() - Method in class mgui.datasources.DataField

isBoundaryNode(int) - Method in class mgui.geometry.mesh.NeighbourhoodMesh

Returns true if this node lies on a mesh boundary; false otherwise.

isBusy() - Method in class mgui.interfaces.stats.HistogramPlot

isByRef() - Method in class mgui.interfaces.shapes.Volume3DInt

isCancelled() - Method in class mgui.interfaces.gui.AbstractProgressUpdater

isCancelled() - Method in class mgui.interfaces.gui.InterfaceProgressBar

isCancelled() - Method in interface mgui.interfaces.ProgressUpdater

Indicates whether the monitored process has been cancelled

isCellEditable(int, int) - Method in class mgui.interfaces.attributes.table.AttributeTableModel

isCellEditable(int, int) - Method in class mgui.interfaces.datasources.DataTableModel

isCellEditable(int, int) - Method in class mgui.interfaces.gui.RowNumberTable

isCellEditable(int, int) - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog.YTableModel

isCellEditable(int, int) - Method in class mgui.interfaces.plots.sgt.SgtScatterPlotDialog.XYTableModel

isCellEditable(int, int) - Method in class mgui.interfaces.shapes.InterfaceShapesPanel.VertexSelectionTableModel

isCellEditable(int, int) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel.OverlayVolumeTableModel

isCellEditable(int, int) - Method in class mgui.interfaces.trees.TreeTableModelAdapter

isCellEditable(int, int) - Method in class mgui.interfaces.variables.tables.VariableTableModel

isCellEditable(int, int) - Method in class mgui.io.domestic.maps.NameMapOutDialogBox.TableModel

isCellEditable(int, int) - Method in class mgui.io.domestic.shapes.PointSet2DInputDialogBox.TableModel

isCellEditable(int, int) - Method in class mgui.io.domestic.shapes.PointSet3DDataInputDialogBox.TableModel

isCellEditable(int, int) - Method in class mgui.io.domestic.shapes.PointSet3DInputDialogBox.TableModel

isCellEditable(int, int) - Method in class mgui.io.domestic.shapes.PolygonSet3DInputDialogBox.TableModel

isCellEditable(int, int) - Method in class mgui.io.domestic.shapes.ShapeInputDialogBox.TableModel

isCellEditable(int, int) - Method in class mgui.io.domestic.shapes.ShapeModel3DOutputDialog.TableModel

isCellEditable(int, int) - Method in class mgui.io.domestic.shapes.SurfaceDataInputDialogBox.TableModel

isCellEditable(int, int) - Method in class mgui.io.domestic.shapes.SurfaceDataOutputDialogBox.TableModel

isCellEditable(int, int) - Method in class mgui.io.domestic.shapes.SurfaceInputDialogBox.TableModel

isCellEditable(int, int) - Method in class mgui.io.domestic.shapes.VectorSet3DInputDialogBox.TableModel

isCellEditable(int, int) - Method in class mgui.io.domestic.variables.MatrixInDialogBox.TableModel

isCellEditable(Object, int) - Method in class mgui.interfaces.trees.AbstractTreeTableModel

By default, make the column with the Tree in it the only editable one.

isCellEditable(Object, int) - Method in interface mgui.interfaces.trees.TreeTableModel

Indicates whether the the value for node node, at column number column is editable.

isCellEditable(EventObject) - Method in class mgui.interfaces.trees.AbstractTreeCellEditor

isChanged() - Method in class mgui.interfaces.shapes.util.Plane3DDialog

isClockwise(ArrayList<MguiFloat>) - Static method in class mgui.geometry.util.GeometryFunctions

Determines from a list of vertex-wise cross-products whether a polygon is clockwise or not (i.e., counter-clockwise).

isClockwise(Polygon2D) - Static method in class mgui.geometry.util.GeometryFunctions

Determines whether a polygon is clockwise or not (i.e., counter-clockwise).

isClockwise(Point2f, Point2f, Point2f) - Static method in class mgui.geometry.util.GeometryFunctions

Determines whether a triangle defined by three 2D points is clockwise or not (i.e., counter-clockwise).

isClockwise(Point3f, Point3f, Point3f) - Static method in class mgui.geometry.util.GeometryFunctions

Determines whether a triangle defined by three 3D points is clockwise or not (i.e., counter-clockwise).

isClockwiseFace(int) - Method in class mgui.geometry.Mesh3D

isClosed() - Method in class mgui.datasources.DataRecordSet

isClosed() - Method in class mgui.interfaces.shapes.Polygon2DInt

isClosed() - Method in class mgui.interfaces.shapes.Polygon3DInt

Determines whether this polygon's end vertices are to be connected.

isClosed(boolean) - Method in class mgui.interfaces.shapes.Polygon2DInt

isCoincident(Point2f, Point2f) - Static method in class mgui.geometry.util.GeometryFunctions

Determines whether p1 and p2 coincide, within the default tolerance distance GeometryFunctions.error.

isCoincident(Point2f, Point2f, float) - Static method in class mgui.geometry.util.GeometryFunctions

Determines whether p1 and p2 coincide, within the given tolerance distance.

isCoincident(Point3d, Point3d) - Static method in class mgui.geometry.util.GeometryFunctions

Determines whether p1 and p2 coincide, within the default tolerance distance GeometryFunctions.error.

isCoincident(Point3f, Point3f) - Static method in class mgui.geometry.util.GeometryFunctions

Determines whether p1 and p2 coincide, within the default tolerance distance GeometryFunctions.error.

isComparable() - Method in class mgui.datasources.DataField

isComparable(int) - Static method in class mgui.datasources.DataTypes

isCompatibleObject(InterfaceObject) - Method in class mgui.interfaces.io.InterfaceIOType

Does this I/O type handle objects of type object?

isCompatibleOptions(InterfaceIOOptions) - Method in class mgui.interfaces.io.InterfaceIOType

Determines whether options is compatible with this type

isCompatibleRaster(Raster) - Method in class mgui.image.util.WindowedColourModel

isCompatibleType(InterfaceIOType) - Method in class mgui.interfaces.io.InterfaceIOType

Determines whether this type supports all of the objects supported by type

isComposite() - Method in class mgui.interfaces.shapes.Volume3DInt

Determines whether this volume is current set to render as a composite of its columns true, or as the current column only false.

isComposite(boolean) - Method in class mgui.interfaces.shapes.Volume3DInt

Set the flag which determines whether this volume should render as a composite of its columns show == true, or as the current column only show == false.

isComposite(boolean, boolean) - Method in class mgui.interfaces.shapes.Volume3DInt

Set the flag which determines whether this volume should render as a composite of its columns show == true, or as the current column only show == false.

isConnected - Variable in class mgui.datasources.DataSource

isConnected() - Method in class mgui.datasources.DataSource

isConnectedToDendrite() - Method in class mgui.neuro.components.AbstractDendrite

isConnectedToDendrite() - Method in class mgui.neuro.components.compartments.CompartmentalDendrite

isConnectedToDendrite() - Method in interface mgui.neuro.components.Dendrite

isConnectedToSoma() - Method in class mgui.neuro.components.AbstractDendrite

isConnectedToSoma() - Method in class mgui.neuro.components.compartments.CompartmentalDendrite

isConnectedToSoma() - Method in interface mgui.neuro.components.Dendrite

isConsumed() - Method in class mgui.interfaces.shapes.util.ShapeEvent

isConvex(ArrayList<MguiFloat>) - Static method in class mgui.geometry.util.GeometryFunctions

Determines from a list of vertex-wise cross-products whether a polygon is convex or not (i.e., concave).

isCopiable - Variable in class mgui.interfaces.attributes.Attribute

isCopiable() - Method in class mgui.interfaces.attributes.Attribute

Is this attribute copiable?

isCtrlPressed() - Method in class mgui.interfaces.tools.ToolInputEvent

isCurrent(int) - Method in class mgui.interfaces.shapes.SectionSet2DInt

isDataFlavorSupported(DataFlavor) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet

isDataFlavorSupported(DataFlavor) - Method in class mgui.interfaces.shapes.Shape2DInt

isDataFlavorSupported(DataFlavor) - Method in class mgui.interfaces.shapes.Shape3DInt

isDataFlavorSupported(DataFlavor) - Method in class mgui.interfaces.shapes.ShapeModel3D

isDataFlavorSupported(DataFlavor) - Method in class mgui.interfaces.shapes.ShapeSet3DInt

isDataFlavorSupported(DataFlavor) - Method in class mgui.pipelines.PipelineTask

isDate() - Method in class mgui.datasources.DataField

isDestroyed - Variable in class mgui.interfaces.AbstractInterfaceObject

isDestroyed - Variable in class mgui.interfaces.graphs.InterfaceAbstractGraph

isDestroyed - Variable in class mgui.interfaces.gui.InterfaceProgressBar

isDestroyed - Variable in class mgui.interfaces.InterfacePanel

isDestroyed - Variable in class mgui.interfaces.plots.InterfacePlot

isDestroyed - Variable in class mgui.interfaces.trees.InterfaceTreeNode

isDestroyed - Variable in class mgui.models.dynamic.functions.Function

isDestroyed - Variable in class mgui.models.environments.AbstractEnvironmentDataSource

isDestroyed - Variable in class mgui.models.environments.SimpleEnvironment

isDestroyed() - Method in class mgui.interfaces.AbstractInterfaceObject

isDestroyed() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D

isDestroyed() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D

isDestroyed() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph

isDestroyed() - Method in class mgui.interfaces.InterfaceDisplayPanel

isDestroyed() - Method in interface mgui.interfaces.InterfaceObject

Test whether this object has been destroyed

isDestroyed() - Method in class mgui.interfaces.InterfaceOptions

isDestroyed() - Method in class mgui.interfaces.InterfacePanel

isDestroyed() - Method in class mgui.interfaces.io.InterfaceFile

isDestroyed() - Method in class mgui.interfaces.plots.InterfacePlot

isDestroyed() - Method in class mgui.interfaces.plots.mgui.PlotMap2D

isDestroyed() - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout

isDestroyed() - Method in class mgui.interfaces.queries.InterfaceQuery

isDestroyed() - Method in class mgui.interfaces.shapes.InterfaceSectionSetPanel

isDestroyed() - Method in class mgui.interfaces.shapes.InterfaceShape

isDestroyed() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet

isDestroyed() - Method in class mgui.interfaces.shapes.ShapeModel3D

isDestroyed() - Method in class mgui.interfaces.shapes.ShapeSceneNode

isDestroyed() - Method in interface mgui.interfaces.shapes.util.ShapeListener

Returns true if this listener has been destroyed.

isDestroyed() - Method in class mgui.interfaces.tables.InterfaceTableModel

isDestroyed() - Method in class mgui.interfaces.trees.InterfaceTreeNode

isDestroyed() - Method in class mgui.models.dynamic.functions.Function

isDestroyed() - Method in class mgui.models.environments.AbstractEnvironmentDataSource

isDestroyed() - Method in class mgui.models.environments.SimpleEnvironment

isDestroyed() - Method in class mgui.pipelines.PipelineProcess

isDestroyed() - Method in class mgui.pipelines.TaskParameterInstance

isDisplayable(Object) - Method in class mgui.interfaces.graphics.InterfaceGraphic

isDisplayable(Object) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D

isDisplayable(Object) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay

isDisplayable(Object) - Method in class mgui.interfaces.plots.InterfacePlotDisplay

isDisplayable(Object) - Method in class mgui.interfaces.tables.InterfaceDataTable

isDragging - Variable in class mgui.interfaces.maps.ContinuousColourBar

isDrawable - Variable in class mgui.interfaces.shapes.InterfaceShape

isDrawable() - Method in class mgui.interfaces.shapes.InterfaceShape

isDropCell - Variable in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer

isDynamic - Variable in class mgui.io.foreign.vol.VolumeInputOptions

isEdit - Variable in class mgui.datasources.DataRecordSet

isEditable - Variable in class mgui.interfaces.attributes.Attribute

isEditable - Variable in class mgui.interfaces.attributes.table.AttributeTableModel

isEditable - Variable in class mgui.interfaces.graphics.View3D

isEditable() - Method in class mgui.datasources.DataField

isEditable() - Method in class mgui.interfaces.attributes.Attribute

isEditable() - Method in class mgui.interfaces.variables.VariableInt

isEmpty() - Method in class au.edu.unsw.cse.EdgeStack

isEmpty() - Method in class au.edu.unsw.cse.PointStack

isEnabled(int, int) - Method in class mgui.io.domestic.shapes.ShapeModel3DOutputDialog.TableModel

Return the enabled state of a component, based on the XML type

isEOF() - Method in class mgui.io.util.BufferedRandomAccessFile

isEven(double) - Static method in class mgui.numbers.NumberFunctions

isExclusive() - Method in class mgui.interfaces.tools.dialogs.DialogTool

isExclusive() - Method in class mgui.interfaces.tools.graphics.Tool2D

isExclusive() - Method in class mgui.interfaces.tools.graphics.Tool3D

isExclusive() - Method in class mgui.interfaces.tools.graphs.ToolGraphImage

isExclusive() - Method in class mgui.interfaces.tools.graphs.ToolGraphTransform

isExclusive() - Method in class mgui.interfaces.tools.shapes.ToolQueryShape2D

isExclusive() - Method in class mgui.interfaces.tools.shapes.ToolQueryShape3D

isExclusive() - Method in class mgui.interfaces.tools.shapes.ToolSelectMeshBoundaryNodes

isExclusive() - Method in class mgui.interfaces.tools.shapes.ToolSelectNodesWithPolygon

isExclusive() - Method in class mgui.interfaces.tools.shapes.ToolSelectRegionBoundaryNodes

isExclusive() - Method in interface mgui.interfaces.tools.Tool

Specifies whether this tool requires exclusively; otherwise it will run in parallel with the default tool, if one exists.

isExpanded - Variable in class mgui.interfaces.layouts.CategoryTitle

isFillable() - Method in class mgui.geometry.util.NodeShape

Determines whether this shape should be filled

isFiltered - Variable in class mgui.interfaces.datasources.DataTableModel

isFinished() - Method in class mgui.io.domestic.shapes.xml.ShapeSet3DXMLHandler

isFlushToMain() - Method in class mgui.interfaces.plots.sgt.SgtAxis

Determines whether this axis should appear flush with the main opposing axis.

isGenericAssignable(Class<?>, Class<?>) - Static method in class mgui.classes.ClassFunctions

isHeritableAttribute(String) - Method in class mgui.interfaces.shapes.graphs.Graph3DInt

isHeritableAttribute(String) - Method in class mgui.interfaces.shapes.InterfaceShape

Is this parent attribute inherited by a child shape?

isHeritableAttribute(String) - Method in class mgui.interfaces.shapes.Mesh3DInt

isHeritableAttribute(String) - Method in class mgui.interfaces.shapes.Shape2DInt

isHeritableAttribute(String) - Method in class mgui.interfaces.shapes.Shape3DInt

isHidden - Variable in class mgui.interfaces.InterfaceHideablePanel

isImageShape - Variable in class mgui.interfaces.shapes.InterfaceShape

isImageShape() - Method in class mgui.interfaces.shapes.Image2DInt

isImageShape() - Method in class mgui.interfaces.shapes.InterfaceShape

isImmediate - Variable in class mgui.interfaces.tools.graphics.Tool2D

isImmediate - Variable in class mgui.interfaces.tools.graphics.Tool3D

isImmediate - Variable in class mgui.interfaces.tools.graphs.ToolGraph

isImmediate() - Method in class mgui.interfaces.tools.dialogs.DialogTool

isImmediate() - Method in class mgui.interfaces.tools.graphics.Tool2D

isImmediate() - Method in class mgui.interfaces.tools.graphics.Tool3D

isImmediate() - Method in class mgui.interfaces.tools.graphs.ToolGraph

isImmediate() - Method in interface mgui.interfaces.tools.Tool

Specifies whether this tool is immediate; this indicates that it should be run immediately upon calling and stop, rather than wait for AWT events.

isInheritingAttribute(Attribute<?>) - Method in class mgui.interfaces.shapes.InterfaceShape

Does this child attribute inherit values from a parent shape?

isInheritingAttribute(Attribute<?>) - Method in class mgui.interfaces.shapes.PointSet2DInt

isInheritingAttribute(Attribute<?>) - Method in class mgui.interfaces.shapes.Shape2DInt

isInheritingAttribute(Attribute<?>) - Method in class mgui.interfaces.shapes.Shape3DInt

isInit() - Static method in class mgui.interfaces.InterfaceEnvironment

Indicates whether this environment has been initialized (i.e., the init function has been called).

isInit() - Static method in class mgui.interfaces.InterfaceSession

Specifies whether this session has been completely initialized yet.

isInMask(int, int, int, VolumeMaskOptions_old) - Static method in class mgui.geometry.volume.VolumeFunctions

Determines whether the voxel at i, j, k is in the mask specified by params.

isInPlane(Shape3D, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions

Determines whether shape s lies in plane p

isInPlane(Point3d, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions

Determines whether point pt lies in plane

isInPlane(Point3d, Vector3d, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions

Determines whether the given line segment lies in plane.

isInPlane(Point3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions

Determines whether point pt lies in plane plane

isInPlane(Point3f, Vector3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions

Determines whether the given line segment lies in plane.

isInput() - Method in class mgui.interfaces.io.InterfaceIOType

Is this input?

isInteger(String) - Static method in class mgui.util.StringFunctions

Determines whether s can be converted to an integer

isIntermediateAngleCW(double, double, double) - Static method in class mgui.geometry.util.GeometryFunctions

isInternalConcave(Polygon2D, Point2f) - Static method in class mgui.geometry.util.GeometryFunctions

Tests whether a point pt is contained within the boundary of a polygon poly.

isInternalConvex(Polygon2D, Point2f) - Static method in class mgui.geometry.util.GeometryFunctions

Tests whether a point pt is contained within the boundary of a convex polygon poly.

isInterrupted() - Method in class mgui.pipelines.JavaProcess

isKeyField() - Method in class mgui.datasources.DataField

isLabelShape() - Method in class mgui.interfaces.shapes.Shape2DInt

isLabelShape() - Method in class mgui.interfaces.shapes.Text2DInt

isLeaf(Object) - Method in class mgui.interfaces.trees.AbstractTreeTableModel

isLegalName(String) - Method in class mgui.interfaces.shapes.InterfaceShape

Is this a legal name for a shape.

isLight - Variable in class mgui.interfaces.shapes.InterfaceShape

isLight() - Method in class mgui.interfaces.shapes.InterfaceShape

isLive() - Method in class mgui.interfaces.shapes.Shape3DInt

isLive3D() - Method in class mgui.interfaces.shapes.ShapeModel3D

Indicates whether this model has a live 3D node

isLocked - Variable in class mgui.datasources.DataRecordSet

isMapped - Variable in class mgui.morph.sections.MappedPolygon2D

isMaskApplied(String) - Method in class mgui.interfaces.shapes.Volume3DInt

isMaskedAtPoint(Point3f) - Method in class mgui.interfaces.shapes.Volume3DInt

Determines whether the voxel enclosing point is masked.

isMaskedAtVoxel(int[]) - Method in class mgui.interfaces.shapes.Volume3DInt

Determines whether voxel is masked by any active mask

isMaskedAtVoxel(int, int, int) - Method in class mgui.interfaces.shapes.Volume3DInt

Determines whether voxel is masked by any active mask

isMember(Class<?>, Class<?>) - Static method in class mgui.classes.ClassFunctions

isModified - Variable in class mgui.datasources.DataField

isMouseOverSelect - Variable in class mgui.interfaces.trees.InterfaceTreeNode

isMultiFileEnabled() - Method in class mgui.io.domestic.shapes.PointSet2DInputOptions

isMultiFileEnabled() - Method in class mgui.io.domestic.shapes.PointSet3DInputOptions

isMultiFileEnabled() - Method in class mgui.io.domestic.shapes.PolygonSet3DInputOptions

isMultiFileEnabled() - Method in class mgui.io.domestic.shapes.SurfaceDataOutputOptions

isMultiFileEnabled() - Method in class mgui.io.domestic.shapes.VectorSet3DInputOptions

isMultiFileEnabled() - Method in class mgui.io.foreign.caret.CaretMetricOptions

isMultiFileEnabled() - Method in class mgui.io.foreign.minc.MincSurfaceDataInOptions

isMultiFileEnabled() - Method in class mgui.io.foreign.minc.MincSurfaceDataOutOptions

isNameMapped(String) - Method in class mgui.interfaces.shapes.VertexDataColumn

Returns true if the data link specified by name has an associated name map.

isNewGrid() - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel

isNextSection - Variable in class mgui.morph.sections.MorphSections3DInt

isNifti() - Method in class mgui.io.standard.nifti.NiftiMetadata

isNonZeroVector(Vector3d) - Static method in class mgui.geometry.util.GeometryFunctions

isNonZeroVector(Vector3f) - Static method in class mgui.geometry.util.GeometryFunctions

isNumeric - Variable in class mgui.interfaces.attributes.Attribute

isNumeric() - Method in class mgui.datasources.DataField

isNumeric() - Method in class mgui.interfaces.attributes.Attribute

isNumeric() - Method in class mgui.interfaces.variables.MatrixInt

isNumeric() - Method in class mgui.interfaces.variables.StringVectorInt

isNumeric() - Method in class mgui.interfaces.variables.VariableInt

Determines whether this variable contains numeric values.

isNumeric(int) - Static method in class mgui.datasources.DataTypes

Determines whether a given SQL type is numeric

isNumeric(Object) - Static method in class mgui.numbers.NumberFunctions

Determines whether obj is numeric; i.e., an instance of MguiNumber (except arBoolean), or a Java primitive wrapper (one of Integer, Short, Float, or Double).

isNumeric(String) - Static method in class mgui.command.CommandInterpreter

isNumeric(String) - Static method in class mgui.util.StringFunctions

Determines whether s can be converted to a number

isOblique(double) - Static method in class mgui.geometry.util.GeometryFunctions

isObtuse(Triangle3D) - Static method in class mgui.geometry.util.GeometryFunctions

Determines whether tri is an obtuse triangle.

isOn - Variable in class mgui.interfaces.graphics.video.VideoTask

isOutput() - Method in class mgui.interfaces.io.InterfaceIOType

Is this output?

isOverridden - Variable in class mgui.interfaces.shapes.InterfaceShape

isOverriding() - Method in class mgui.interfaces.shapes.ShapeSet2DInt

isOverriding() - Method in class mgui.interfaces.shapes.ShapeSet3DInt

Query whether this set is currently overriding its members' attributes.

isParallel(Plane3D, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions

Determines whether the two planes are parallel.

isPathEditable(TreePath) - Method in class mgui.interfaces.trees.InterfaceTree

isPopulated() - Method in class mgui.datasources.DataIndex

Test whether this index is currently populated.

isPrependSubjectInput() - Method in class mgui.pipelines.PipelineProcessInstance

isPrependSubjectOutput() - Method in class mgui.pipelines.PipelineProcessInstance

isPrevSection - Variable in class mgui.morph.sections.MorphSections3DInt

isRegistered() - Method in class mgui.interfaces.gui.InterfaceProgressBar

isRequired() - Method in class mgui.datasources.DataField

isReversed - Variable in class mgui.morph.sections.MappedPolygon2D

isReversed() - Method in class mgui.interfaces.plots.sgt.SgtAxis

Determines whether the ordinates on this axis are reversed.

isSecret - Variable in class mgui.interfaces.attributes.Attribute

isSecret() - Method in class mgui.interfaces.attributes.Attribute

isSelectable - Variable in class mgui.interfaces.trees.InterfaceTreeNode

isSelectable() - Method in class mgui.interfaces.shapes.InterfaceShape

Returns the selectability of this InterfaceShape.

isSelectable() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet

isSelectable() - Method in interface mgui.interfaces.shapes.ShapeSet

isSelectable() - Method in class mgui.interfaces.trees.InterfaceTreeNode

isSelected(int) - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog.YTableModel

isSelected(int) - Method in class mgui.interfaces.plots.sgt.SgtScatterPlotDialog.XYTableModel

isSelected(int) - Method in class mgui.interfaces.shapes.mesh.VertexSelection

isSet - Variable in class mgui.io.foreign.duff.DuffSurfaceHeader

isShape() - Method in interface mgui.interfaces.graphics.GraphicListener

Deprecated.

isShape() - Method in class mgui.interfaces.graphics.InterfaceGraphic2DTextBox

isShape() - Method in class mgui.interfaces.graphics.InterfaceGraphicTextBox

isShape() - Method in class mgui.interfaces.InterfaceSelectionPanel

isShape() - Method in class mgui.interfaces.queries.InterfaceQueryPanel

isShape() - Method in class mgui.interfaces.shapes.selection.InterfaceSelectionSet

isShape() - Method in class mgui.interfaces.shapes.ShapeSet3DInt

isShape() - Method in class mgui.interfaces.shapes.Text2DIntMouseCoords

isShiftPressed() - Method in class mgui.interfaces.tools.ToolInputEvent

isSolidColour() - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn

Whether this column should be rendered as a solid colour (for values > 0).

isStopped() - Method in class mgui.interfaces.graphics.video.Video

Determines whether this video is currently running or not.

issueTreeNode() - Method in class mgui.datasources.DataField

issueTreeNode() - Method in class mgui.interfaces.AbstractInterfaceObject

Issues a new tree node and sets it using AbstractInterfaceObject.setTreeNode(mgui.interfaces.trees.InterfaceTreeNode).

issueTreeNode() - Method in class mgui.interfaces.attributes.Attribute

issueTreeNode() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph

issueTreeNode() - Method in class mgui.interfaces.InterfaceOptions

issueTreeNode() - Method in class mgui.interfaces.InterfacePanel

issueTreeNode() - Method in class mgui.interfaces.io.InterfaceFile

issueTreeNode() - Method in class mgui.interfaces.io.InterfaceIOType

issueTreeNode() - Method in class mgui.interfaces.plots.mgui.PlotMap2D

issueTreeNode() - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout

issueTreeNode() - Method in class mgui.interfaces.queries.InterfaceQuery

issueTreeNode() - Method in class mgui.interfaces.shapes.SectionSet3DInt

issueTreeNode() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet

issueTreeNode() - Method in class mgui.interfaces.shapes.Shape2DInt

issueTreeNode() - Method in class mgui.interfaces.shapes.Shape3DInt

Issues a new tree node for this ShapeInt.

issueTreeNode() - Method in class mgui.interfaces.shapes.ShapeModel3D

issueTreeNode() - Method in class mgui.interfaces.shapes.ShapeSet2DInt

issueTreeNode() - Method in class mgui.interfaces.tables.InterfaceTableModel

issueTreeNode() - Method in interface mgui.interfaces.trees.TreeObject

Issues a new InterfaceTreeNode for this object.

issueTreeNode() - Method in class mgui.models.environments.SimpleEnvironment

issueTreeNode() - Method in class mgui.pipelines.PipelineProcess

issueTreeNode() - Method in class mgui.pipelines.PipelineTask

issueTreeNode() - Method in class mgui.pipelines.TaskParameterInstance

isSVGFile(File) - Static method in class mgui.io.standard.xml.svg.SVGParser

isSVGFileName(String) - Static method in class mgui.io.standard.xml.svg.SVGParser

isTaskFailed() - Method in class mgui.pipelines.PipelineState

isTaskInterrupted() - Method in class mgui.pipelines.PipelineState

isTaskLocked() - Method in class mgui.interfaces.InterfaceEnvironment

Indicates whether the environment is locked with a task.

isText() - Method in class mgui.datasources.DataField

isText(int) - Static method in class mgui.datasources.DataTypes

Determines whether a given SQL type is text

isText(DataType) - Static method in class mgui.datasources.DataTypes

Determines whether a given data type is text

isTimestamp() - Method in class mgui.datasources.DataField

isToolable(Tool) - Method in class mgui.interfaces.graphics.InterfaceGraphic

isToolable(Tool) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D

isToolable(Tool) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D

isToolable(Tool) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay

isToolable(Tool) - Method in class mgui.interfaces.InterfaceDisplayPanel

isToolable(Tool) - Method in class mgui.interfaces.plots.InterfacePlotDisplay

isToolable(Tool) - Method in class mgui.interfaces.tables.InterfaceDataTable

isToolable(Tool) - Method in interface mgui.interfaces.tools.Toolable

Tests whether this object is toolable by tool

isType(Object, int) - Static method in class mgui.datasources.DataTypes

isUnique() - Method in class mgui.datasources.DataField

isUpdatable - Variable in class mgui.datasources.DataRecordSet

isUpdatable() - Method in class mgui.datasources.DataRecordSet

Specifies whether this record set can be updated.

isUpdated() - Method in class mgui.neuro.stats.SimpleStatistics

isValid() - Method in class mgui.datasources.DataConnection

isValid() - Method in class mgui.geometry.Mesh3D.MeshFace3D

isValidPoint(Point2f) - Static method in class mgui.geometry.util.GeometryFunctions

isValidPoint(Point3f) - Static method in class mgui.geometry.util.GeometryFunctions

isValidSphere(Sphere3D) - Static method in class mgui.geometry.util.GeometryFunctions

isValidTitle(String) - Method in class mgui.interfaces.InterfaceDisplayPanel

isValidTriangle(Triangle3D) - Static method in class mgui.geometry.util.GeometryFunctions

isValidVector(Vector2f) - Static method in class mgui.geometry.util.GeometryFunctions

isValidVector(Vector3d) - Static method in class mgui.geometry.util.GeometryFunctions

isValidVector(Vector3f) - Static method in class mgui.geometry.util.GeometryFunctions

isVisible() - Method in class mgui.interfaces.graphics.util.Axes3D

isVisible() - Method in class mgui.interfaces.shapes.InterfaceShape

Returns the visibility of this InterfaceShape.

isVisible() - Method in class mgui.interfaces.shapes.LPolygon2DInt

isVisible() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet

isVisible() - Method in interface mgui.interfaces.shapes.ShapeSet

isVisible() - Method in class mgui.interfaces.shapes.trees.ShapeTreeCellRenderer

isVisible(int) - Method in class mgui.interfaces.shapes.ShapeSet2DInt

isVisible(int) - Method in class mgui.interfaces.shapes.ShapeSet3DInt

Determines whether the ith member of this set is visible

isWorkingSet() - Method in class mgui.interfaces.InterfaceSelectionPanel

isWriting() - Method in class mgui.io.domestic.variables.DefaultMatrixFileWriter

isZero(Tuple3f) - Static method in class mgui.geometry.util.GeometryFunctions

Determines whether tuple is of length zero.

Item(Object, String) - Constructor for class mgui.interfaces.Clipboard.Item

item_map - Variable in class mgui.interfaces.layouts.LayoutDocument

items - Variable in class mgui.interfaces.maps.ValueMap

itemStateChanged(ItemEvent) - Method in class mgui.interfaces.attributes.AttributeSelection

itemStateChanged(ItemEvent) - Method in class mgui.interfaces.attributes.AttributeSelectionMap

itemStateChanged(ItemEvent) - Method in class mgui.interfaces.attributes.tree.AttributeTreeCellEditor

itemStateChanged(ItemEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphicPanel.GraphicWindowListEditor

itemStateChanged(ItemEvent) - Method in class mgui.interfaces.InterfaceComboPanel

itemStateChanged(ItemEvent) - Method in class mgui.interfaces.InterfaceSelectionPanel

itemStateChanged(ItemEvent) - Method in class mgui.interfaces.io.VolumeFileWriteDialog

Deprecated.

itemStateChanged(ItemEvent) - Method in class mgui.interfaces.pipelines.InterfacePipelinesPanel

itemStateChanged(ItemEvent) - Method in class mgui.interfaces.projects.InterfaceProjectPanel

itemStateChanged(ItemEvent) - Method in class mgui.interfaces.queries.InterfaceQueryPanel

itemStateChanged(ItemEvent) - Method in class mgui.interfaces.shapes.InterfaceSectionSetPanel

itemStateChanged(ItemEvent) - Method in class mgui.interfaces.shapes.mesh.InterfaceMeshPanel

itemStateChanged(ItemEvent) - Method in class mgui.interfaces.shapes.selection.InterfaceSelectionSet

iter - Variable in class mgui.models.dynamic.DynamicModelEngine

iterate() - Method in class mgui.interfaces.gui.AbstractProgressUpdater

iterate() - Method in class mgui.interfaces.gui.InterfaceProgressBar

iterate() - Method in interface mgui.interfaces.ProgressUpdater

Increment progress by 1

iterateSubsection() - Method in class mgui.morph.sections.MorphSections3DInt

iterations - Variable in class mgui.morph.sections.MorphSections3DInt

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