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M

M3_temp - Variable in class mgui.interfaces.graphics.InterfaceGraphic3D
 
Mac - mgui.interfaces.InterfaceEnvironment.OsType
 
magic - Variable in class mgui.io.foreign.duff.DuffSurfaceHeader
 
magic - Variable in class mgui.io.standard.nifti.Nifti1Dataset
 
main(String[]) - Static method in class au.edu.unsw.cse.AppletHull
 
main(String[]) - Static method in class au.edu.unsw.cse.BezierToVRML
 
main(String[]) - Static method in class au.edu.unsw.cse.EdgeStackTest
 
main(String[]) - Static method in class au.edu.unsw.cse.QuadTreeTest
 
main(String[]) - Static method in class au.edu.unsw.cse.Quaternion
 
main(String[]) - Static method in class mgui.build.Build
Arguments: -libdir Directory for dependencies -classpathfile File containing classpath specifications -initfile Init file to use (must be in the mgui/resources/init folder)
main(String[]) - Static method in class mgui.datasources.util.DataSourceCommands
 
main(String[]) - Static method in class mgui.interfaces.exec.MguiExec
 
main(String[]) - Static method in class mgui.interfaces.exec.MguiStart
 
main(String[]) - Static method in class mgui.interfaces.shapes.util.Texture3DTest
 
main(String[]) - Static method in class mgui.interfaces.startup.InitFrame
 
main(String[]) - Static method in class mgui.interfaces.unix.UnixFunctions.cat
 
main(String[]) - Static method in class mgui.interfaces.unix.UnixFunctions.cp
 
main(String[]) - Static method in class mgui.interfaces.unix.UnixFunctions.split
 
main(String[]) - Static method in class mgui.io.foreign.analyze.AnalyzeRotateVolume
 
main(String[]) - Static method in class mgui.io.standard.nifti.Nifti1Dataset
main routine is used only for testing
main(String[]) - Static method in class mgui.neuro.imaging.camino.CaminoTask
 
main(String[]) - Static method in class mgui.neuro.imaging.camino.tasks.CaminoCatTask
 
main(String[]) - Static method in class mgui.neuro.imaging.camino.tasks.CaminoCopyTask
 
main(String[]) - Static method in class mgui.neuro.imaging.camino.tasks.DTFit
 
main(String[]) - Static method in class mgui.neuro.imaging.camino.tasks.Shredder2
 
main(String[]) - Static method in class mgui.neuro.imaging.camino.tasks.TimedTest
 
main(String[]) - Static method in class mgui.neuro.imaging.tasks.ConvertRawToPNG
 
main(String[]) - Static method in class mgui.util.PowerfulTokenizer
 
main_class - Variable in class mgui.pipelines.JavaProcess
 
main_old(String[]) - Static method in class mgui.io.foreign.analyze.AnalyzeRotateVolume
 
mainLayout - Variable in class mgui.interfaces.InterfaceDialogBox
 
mainPanel - Variable in class mgui.interfaces.InterfaceDialogBox
 
makeAlphaComposite(float) - Method in class mgui.interfaces.graphics.util.DrawingEngine
 
map - Variable in class mgui.interfaces.attributes.AttributeSelectionMap
 
map - Variable in class mgui.interfaces.maps.ContinuousColourBar
 
map - Variable in class mgui.interfaces.maps.DiscreteColourMapLayout
 
map - Variable in class mgui.io.domestic.maps.ColourMapXMLHandler
 
map - Variable in class mgui.io.domestic.maps.DiscreteColourMapLoader
 
map - Variable in class mgui.io.domestic.maps.DiscreteColourMapOutOptions
 
map - Variable in class mgui.io.domestic.maps.NameMapXMLHandler
 
Map - Class in mgui.interfaces.maps
Represents a coordinate mapping from one coordinate system to another (typically a model system to screen or printer coordinates)
Map - mgui.interfaces.plots.sgt.SgtPlotLayout.GraphType
 
Map() - Constructor for class mgui.interfaces.maps.Map
 
MAP_2D - Static variable in class mgui.interfaces.maps.Map
 
MAP_3D - Static variable in class mgui.interfaces.maps.Map
 
map_idx_to_parent - Variable in class mgui.interfaces.shapes.Shape2DInt
 
map_size - Variable in class mgui.image.util.WindowedColourModel
 
map2D - Variable in class mgui.interfaces.graphics.InterfaceGraphicTextBox
 
Map2D - Class in mgui.interfaces.maps
Maps from a given coordinate system to the screen
Map2D() - Constructor for class mgui.interfaces.maps.Map2D
 
Map2D(Dimension, double, Point2f) - Constructor for class mgui.interfaces.maps.Map2D
 
map3D - Variable in class mgui.interfaces.graphics.InterfaceGraphicTextBox
 
Map3D - Class in mgui.interfaces.maps
Class to provide an interface for mapping a 3D viewing platform.
Map3D() - Constructor for class mgui.interfaces.maps.Map3D
 
mapCortexToVolume(Mesh3DInt, Volume3DInt, Object, ProgressUpdater) - Method in class mgui.geometry.neuro.mesh.NeuroMeshEngine
Maps cortical surface values to a volume
mapDataShapeToGraphic(Shape2D) - Method in class mgui.interfaces.plots.mgui.PlotMap2D
Maps an mgui shape from data points to graphic points
mapDataShapeToPlot(Shape2D) - Method in class mgui.interfaces.plots.mgui.PlotMap2D
Maps an mgui shape from data points to plot points
mapDataToGraphic(Point2d) - Method in class mgui.interfaces.plots.mgui.PlotMap2D
Maps a data point to a graphic point.
mapDataToPlot(Point2d) - Method in class mgui.interfaces.plots.mgui.PlotMap2D
Maps a data point to a plot point.
MapEvent - Class in mgui.interfaces.maps
 
MapEvent(Map) - Constructor for class mgui.interfaces.maps.MapEvent
 
mapGraphicToData(Point) - Method in class mgui.interfaces.plots.mgui.PlotMap2D
Maps a graphic point to a data point
mapGraphicToPlot(Point) - Method in class mgui.interfaces.plots.mgui.PlotMap2D
Maps a graphic point to a plot point
mapGrid3DToCortexGaussian(Mesh3D, Volume3DInt, String, double, double, double, double, double, boolean) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
 
MapListener - Interface in mgui.interfaces.maps
 
mapMeshToVolume(Mesh3DInt, Volume3DInt, String, InterfaceProgressBar) - Method in class mgui.geometry.mesh.MeshEngine
 
mapMeshToVolumeGaussian(Mesh3DInt, Volume3DInt, String, String, double, double, double, double, boolean, boolean, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions
Projects vertex-wise data from a given Mesh3DInt data column to a Grid3D channel, normal and transverse (tangent) Gaussian functions.
mapMeshToVolumeGaussian(Mesh3DInt, Volume3DInt, InterfaceProgressBar) - Method in class mgui.geometry.mesh.MeshEngine
 
MappedPolygon2D - Class in mgui.morph.sections
Implements a node mapping between two Polygon2D shapes.
MappedPolygon2D() - Constructor for class mgui.morph.sections.MappedPolygon2D
 
MappedPolygon2D(Polygon2D, Polygon2D, int, int) - Constructor for class mgui.morph.sections.MappedPolygon2D
Constructor passing a source (A) and target (B) polygon.
MappedPolygon2DPath - Class in mgui.morph.sections
 
MappedPolygon2DPath(ArrayList<MappedPolygon2D>) - Constructor for class mgui.morph.sections.MappedPolygon2DPath
 
MappedPolygon2DPath(Polygon2D) - Constructor for class mgui.morph.sections.MappedPolygon2DPath
 
MappedPolygon2DPath(MappedPolygon2D) - Constructor for class mgui.morph.sections.MappedPolygon2DPath
 
MappedPolygon2DPath(MappedPolygon2DPath) - Constructor for class mgui.morph.sections.MappedPolygon2DPath
 
mappings - Variable in class mgui.interfaces.neuro.InterfaceNeuroAtlas
 
mapPlotShapeToGraphic(Shape2D) - Method in class mgui.interfaces.plots.mgui.PlotMap2D
Maps an mgui shape from data points to graphic points
mapPlotToGraphic(Point2d) - Method in class mgui.interfaces.plots.mgui.PlotMap2D
Maps a plot point to a graphic point
mapPolygons(double) - Method in class mgui.morph.sections.MappedPolygon2D
 
maps - Variable in class mgui.io.domestic.maps.NameMapOutOptions
 
maps - Variable in class mgui.morph.sections.MappedPolygon2DPath
 
mapUpdated(MapEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphic
 
mapUpdated(MapEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
 
mapUpdated(MapEvent) - Method in interface mgui.interfaces.maps.MapListener
 
mapVolumeToCortex(Mesh3D, Volume3DInt, Object, ProgressUpdater) - Method in class mgui.geometry.neuro.mesh.NeuroMeshEngine
Maps a volume to a cortical surface
mapVolumeToCortexGaussian(Mesh3D, Volume3DInt, String, double, double, double, double, Object, boolean, ProgressUpdater, boolean, String) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
Maps values from a Grid3D object to a mesh object representing a middle cortical surface, by applying a Gaussian kernal to voxels in the vicinity of each mesh vertex.
mapVolumeToMesh(Mesh3D, Volume3DInt, String) - Method in class mgui.geometry.mesh.MeshEngine
 
mapVolumeToMesh(Mesh3D, Volume3DInt, String, InterfaceProgressBar) - Method in class mgui.geometry.mesh.MeshEngine
 
mapVolumeToMeshEV(Mesh3D, Volume3DInt, String, double, float, int, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions
Maps the values in channel of grid, an instance of Grid3D, to the vertices of mesh, using a containing-voxel(s) approach.
mapVolumeToMeshEV(Mesh3D, Volume3DInt, String, double, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions
Maps the values in channel of grid, an instance of Grid3D, to the vertices of mesh, using a containing-voxel approach.
mapVolumeToMeshEVBlocking(Mesh3D, Volume3DInt, String, double, float, int, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions
Maps the values in channel of grid, an instance of Grid3D, to the vertices of mesh, using a containing-voxel(s) approach.
mapVolumeToMeshGaussian(Mesh3D, Volume3DInt, String, double, double, double, double, String, boolean) - Static method in class mgui.geometry.mesh.MeshFunctions
 
mapVolumeToMeshGaussian(Mesh3D, Volume3DInt, String, double, double, double, double, String, boolean, ProgressUpdater, boolean, double, double, String) - Static method in class mgui.geometry.mesh.MeshFunctions
Maps values from a Grid3D object to a mesh object by applying a Gaussian kernal to voxels in the vicinity of each mesh vertex.
mapVolumeToVolume(Volume3DInt, Volume3DInt, String, ProgressUpdater) - Method in class mgui.geometry.volume.VolumeEngine
Maps a column of source to a column of target, given the attributes corresponding to method.
mapVolumeToVolumeEV(Volume3DInt, Volume3DInt, String, String) - Static method in class mgui.geometry.volume.VolumeFunctions
Maps volume_source to volume_target, using the enclosing voxel to assign the value.
mapVolumeToVolumeEV(Volume3DInt, Volume3DInt, String, String, double, ProgressUpdater) - Static method in class mgui.geometry.volume.VolumeFunctions
Maps volume_source to volume_target, using the enclosing voxel to assign the value.
mapVolumeToVolumeEV(Volume3DInt, Volume3DInt, String, String, ProgressUpdater) - Static method in class mgui.geometry.volume.VolumeFunctions
Maps volume_source to volume_target, using the enclosing voxel to assign the value.
mapVolumeToVolumeEVBlocking(Volume3DInt, Volume3DInt, String, String, double, ProgressUpdater) - Static method in class mgui.geometry.volume.VolumeFunctions
Maps volume_source to volume_target, using the enclosing voxel to assign the value.
mapVolumeToVolumeInterp(Volume3DInt, Volume3DInt, String, String, String, ArrayList<Object>) - Static method in class mgui.geometry.volume.VolumeFunctions
Maps volume_source to volume_target, using interpolation from all overlapping voxels to assign the value.
mapVolumeToVolumeInterp(Volume3DInt, Volume3DInt, String, String, String, ArrayList<Object>, double, ProgressUpdater) - Static method in class mgui.geometry.volume.VolumeFunctions
Maps volume_source to volume_target, using interpolation from all overlapping voxels to assign the value.
mapVolumeToVolumeInterp(Volume3DInt, Volume3DInt, String, String, String, ArrayList<Object>, ProgressUpdater) - Static method in class mgui.geometry.volume.VolumeFunctions
Maps volume_source to volume_target, using interpolation from all overlapping voxels to assign the value.
mapVolumeToVolumeInterpBlocking(Volume3DInt, Volume3DInt, String, String, String, ArrayList<Object>, double, ProgressUpdater) - Static method in class mgui.geometry.volume.VolumeFunctions
Maps volume_source to volume_target, using interpolation from all overlapping voxels to assign the value.
MapWeight - Class in mgui.morph.sections
 
MapWeight() - Constructor for class mgui.morph.sections.MapWeight
 
MapWeight(double, int, int) - Constructor for class mgui.morph.sections.MapWeight
 
MapWeightComparator - Class in mgui.morph.sections
 
MapWeightComparator() - Constructor for class mgui.morph.sections.MapWeightComparator
 
MapWeightComparator(int) - Constructor for class mgui.morph.sections.MapWeightComparator
 
mask - Variable in class mgui.interfaces.shapes.util.GridSampleModel
added Andrew Reid 211008
maskMeshWithPlane(Mesh3D, Plane3D, double, double) - Static method in class mgui.geometry.mesh.MeshFunctions
 
maskMeshWithPlane(Mesh3D, Plane3D, double, double, double) - Static method in class mgui.geometry.mesh.MeshFunctions
 
maskMeshWithPlane(Mesh3D, Plane3D, double, double, double, VertexSelection) - Static method in class mgui.geometry.mesh.MeshFunctions
Masks a mesh with a plane.
maskOptions - Variable in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
 
masks - Variable in class mgui.interfaces.shapes.Volume3DInt
 
maskShape - Variable in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
 
MathExpression - Class in mgui.interfaces.math
Class represents a mathematical expression, and methods to evaluate it.
MathExpression() - Constructor for class mgui.interfaces.math.MathExpression
 
MathExpressionDialogBox - Class in mgui.interfaces.math
Dialog box to define a mathematical expression, given an instance of VariableObject
MathExpressionDialogBox() - Constructor for class mgui.interfaces.math.MathExpressionDialogBox
 
MathExpressionDialogBox(JFrame, MathExpressionOptions) - Constructor for class mgui.interfaces.math.MathExpressionDialogBox
 
MathExpressionOptions - Class in mgui.interfaces.math
Options for a math expression evaluation.
MathExpressionOptions(VariableObject) - Constructor for class mgui.interfaces.math.MathExpressionOptions
 
MathFunctions - Class in mgui.util
 
MathFunctions() - Constructor for class mgui.util.MathFunctions
 
matrices - Variable in class mgui.io.domestic.variables.MatrixOutOptions
 
matrix - Variable in class mgui.interfaces.gui.MatrixEditorDialog
 
matrix - Variable in class mgui.interfaces.variables.MatrixInt
 
Matrix - mgui.io.domestic.variables.MatrixInOptions.Variable
 
matrix_map - Variable in class mgui.interfaces.plots.MatrixPlotDataSource
 
MatrixEditorDialog - Class in mgui.interfaces.gui
Dialog to edit and/or load a 4 x 4 matrix.
MatrixEditorDialog(InterfaceFrame, Matrix4d) - Constructor for class mgui.interfaces.gui.MatrixEditorDialog
 
MatrixEditorDialog(InterfacePanel, Matrix4d) - Constructor for class mgui.interfaces.gui.MatrixEditorDialog
 
MatrixEditorDialog(Matrix4d) - Constructor for class mgui.interfaces.gui.MatrixEditorDialog
 
MatrixFileLoader - Class in mgui.io.domestic.variables
 
MatrixFileLoader() - Constructor for class mgui.io.domestic.variables.MatrixFileLoader
 
MatrixFileLoader(File) - Constructor for class mgui.io.domestic.variables.MatrixFileLoader
Constructs this loader with default options:
MatrixFileLoader(File, MatrixInOptions.Format) - Constructor for class mgui.io.domestic.variables.MatrixFileLoader
Constructs this loader with the given format, and default type:
MatrixFileLoader(File, MatrixInOptions.Format, MatrixInOptions.Variable) - Constructor for class mgui.io.domestic.variables.MatrixFileLoader
Constructs this loader with the specified format and type.
MatrixFileWriter - Class in mgui.io.domestic.variables
Base abstract class for writing a matrix to file.
MatrixFileWriter() - Constructor for class mgui.io.domestic.variables.MatrixFileWriter
 
MatrixFunctions - Class in mgui.geometry.util
Utility class providing functions on Jama matrices.
MatrixFunctions() - Constructor for class mgui.geometry.util.MatrixFunctions
 
MatrixImagePlot - Class in mgui.interfaces.plots.mgui
Plots a matrix as an image, with a specified colour map.
MatrixImagePlot() - Constructor for class mgui.interfaces.plots.mgui.MatrixImagePlot
 
MatrixImagePlot.ColourType - Enum in mgui.interfaces.plots.mgui
 
MatrixInDialogBox - Class in mgui.io.domestic.variables
Dialog for specifying input options for loading a matrix or vector from file.
MatrixInDialogBox() - Constructor for class mgui.io.domestic.variables.MatrixInDialogBox
 
MatrixInDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.domestic.variables.MatrixInDialogBox
 
MatrixInDialogBox.TableModel - Class in mgui.io.domestic.variables
 
MatrixInOptions - Class in mgui.io.domestic.variables
Options for loading a matrix from file.
MatrixInOptions() - Constructor for class mgui.io.domestic.variables.MatrixInOptions
 
MatrixInOptions.Format - Enum in mgui.io.domestic.variables
 
MatrixInOptions.Variable - Enum in mgui.io.domestic.variables
 
MatrixInt - Class in mgui.interfaces.variables
Interface for a 2D matrix, represented internally as a Jama matrix of doubles.
MatrixInt(String, int, int) - Constructor for class mgui.interfaces.variables.MatrixInt
 
MatrixInt(String, Matrix) - Constructor for class mgui.interfaces.variables.MatrixInt
 
MatrixInt(ArrayList<ArrayList<MguiNumber>>) - Constructor for class mgui.interfaces.variables.MatrixInt
 
MatrixOutOptions - Class in mgui.io.domestic.variables
 
MatrixOutOptions() - Constructor for class mgui.io.domestic.variables.MatrixOutOptions
 
MatrixOutOptions(int) - Constructor for class mgui.io.domestic.variables.MatrixOutOptions
 
MatrixPlotDataSource - Class in mgui.interfaces.plots
Data source representing a MatrixInt object.
MatrixPlotDataSource() - Constructor for class mgui.interfaces.plots.MatrixPlotDataSource
 
MatrixTransformLoader - Class in mgui.io.domestic.variables
 
MatrixTransformLoader(File) - Constructor for class mgui.io.domestic.variables.MatrixTransformLoader
 
max - Variable in class mgui.interfaces.maps.ContinuousColourBar
 
max - Variable in class mgui.interfaces.shapes.mesh.MeshDataThresholdOptions
 
max - Variable in class mgui.io.domestic.network.CorticalNetworkMatrixInOptions
 
max_intensity_dist - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
 
max_line_size - Variable in class mgui.io.standard.xml.XMLOutputOptions
 
max_number_of_numbers - Variable in class mgui.io.standard.xml.svg.Instruction
 
max_pct - Variable in class mgui.interfaces.neuro.CorticalThicknessOptions
 
max_plateau_slope - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
 
max_property_chars - Variable in class mgui.interfaces.queries.QueryResultPanel
 
max_pt - Variable in class mgui.interfaces.graphs.layouts.Coordinate3DLayout
 
max_pt - Variable in class mgui.interfaces.graphs.layouts.CoordinateLayout
 
max_pt - Variable in class mgui.interfaces.shapes.graphs.util.Graph2DLayout
 
max_skull_int - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
 
max_skull_width - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
 
max_x - Variable in class mgui.interfaces.plots.sgt.SgtPlotLayoutOptions
End of X axis in physical units
max_y - Variable in class mgui.interfaces.plots.sgt.SgtPlotLayoutOptions
End of Y axis in physical units
max_zoom - Variable in class mgui.interfaces.maps.Map2D
 
maxAlpha - Variable in class mgui.io.domestic.shapes.VolumeFileLoader
 
maxAlpha - Variable in class mgui.io.foreign.vol.VolumeInputOptions
 
maximum - Variable in class mgui.interfaces.gui.AbstractProgressUpdater
 
maximumLayoutSize(Container) - Method in class mgui.interfaces.layouts.LineLayout
 
maximumSize - Variable in class mgui.interfaces.layouts.LineLayout
 
maxRadius - Variable in class mgui.morph.sections.RadialRep2D
 
maxThreshold - Variable in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
 
maxX - Variable in class mgui.stats.Histogram
 
maxY - Variable in class mgui.stats.Histogram
 
md_name - Variable in class mgui.io.standard.gifti.xml.GiftiXMLHandler
 
md_offset - Variable in class mgui.io.foreign.duff.DuffSurfaceHeader
 
md_value - Variable in class mgui.io.standard.gifti.xml.GiftiXMLHandler
 
members - Variable in class mgui.interfaces.shapes.ShapeSet2DInt
TODO: replace this with a hashmap, with ID as key.
members - Variable in class mgui.interfaces.shapes.ShapeSet3DInt
 
merge(Mesh2DInt) - Method in class mgui.interfaces.shapes.Mesh2DInt
 
merge_model_set - Variable in class mgui.io.domestic.shapes.ShapeModel3DInputOptions
 
merge_name - Variable in class mgui.io.domestic.shapes.SurfaceInputOptions
 
merge_shapes - Variable in class mgui.io.domestic.shapes.SurfaceInputOptions
 
merge_with_model - Variable in class mgui.io.domestic.shapes.ShapeModel3DInputOptions
 
mergeMeshes(ArrayList<Mesh3D>) - Static method in class mgui.geometry.mesh.MeshFunctions
Merges the mesh shapes in list and returns the resulting single mesh.
mergeMeshes(ArrayList<Mesh3D>, ArrayList<HashMap<Integer, Integer>>) - Static method in class mgui.geometry.mesh.MeshFunctions
Merges the mesh shapes in list and returns the resulting single mesh.
MergePolygons(ArrayList<Polygon2D>) - Method in class mgui.geometry.polygon.PolygonEngine
 
mergeWithSet(ShapeSet3DInt) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
Merge set with this set.
mergeWithSet(ShapeSet3DInt, String) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
Merge set with this set.
mergeWithSet(ShapeSet3DInt, String, boolean) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
Merge set with this set.
mesh - Variable in class mgui.geometry.mesh.EnergySphere
 
mesh - Variable in class mgui.geometry.mesh.MeshEdgeSet
 
mesh - Variable in class mgui.geometry.mesh.NeighbourhoodMesh
 
mesh - Variable in class mgui.interfaces.tools.shapes.ToolCutMeshWithPlaneOptions
 
mesh - Variable in class mgui.io.domestic.shapes.SurfaceDataInputOptions
 
mesh - Variable in class mgui.io.domestic.shapes.SurfaceDataOutputOptions
 
mesh - Variable in class mgui.io.domestic.shapes.SurfaceOutputOptions
 
mesh - Variable in class mgui.io.foreign.caret.CaretMetricOptions
 
mesh - Variable in class mgui.io.foreign.caret.CaretPaintOptions
Deprecated.
 
mesh_data_loader - Variable in class mgui.interfaces.neuro.CorticalThicknessOptions
 
mesh_data_writer - Variable in class mgui.interfaces.neuro.CorticalThicknessOptions
 
mesh_loader - Variable in class mgui.interfaces.neuro.CorticalThicknessOptions
 
mesh_writer - Variable in class mgui.interfaces.neuro.CorticalThicknessOptions
 
mesh1 - Variable in class mgui.interfaces.tools.shapes.ToolGetMeshIntersectionPolylinesOptions
 
mesh2 - Variable in class mgui.interfaces.tools.shapes.ToolGetMeshIntersectionPolylinesOptions
 
Mesh2DInt - Class in mgui.interfaces.shapes
A 2D representation of a Mesh3DInt object.
Mesh2DInt() - Constructor for class mgui.interfaces.shapes.Mesh2DInt
 
Mesh2DInt(ArrayList<Point2f[]>) - Constructor for class mgui.interfaces.shapes.Mesh2DInt
Constructor for this Mesh2DInt.
Mesh2DInt(ArrayList<Point2f[]>, ArrayList<Integer[]>) - Constructor for class mgui.interfaces.shapes.Mesh2DInt
Constructor for this Mesh2DInt.
Mesh3D - Class in mgui.geometry
Geometry class to represent a 3D triangular mesh.
Mesh3D() - Constructor for class mgui.geometry.Mesh3D
 
Mesh3D(Mesh3D) - Constructor for class mgui.geometry.Mesh3D
 
Mesh3D.MeshFace3D - Class in mgui.geometry
Inner class which defines a face in a mesh
Mesh3DInt - Class in mgui.interfaces.shapes
Interface for a Mesh3D shape.
Mesh3DInt() - Constructor for class mgui.interfaces.shapes.Mesh3DInt
 
Mesh3DInt(Mesh3D) - Constructor for class mgui.interfaces.shapes.Mesh3DInt
 
Mesh3DInt(Mesh3D, String) - Constructor for class mgui.interfaces.shapes.Mesh3DInt
 
Mesh3DLoader - Class in mgui.io.domestic.shapes
Deafult loader for loading a Mesh3DInt object.
Mesh3DLoader() - Constructor for class mgui.io.domestic.shapes.Mesh3DLoader
 
Mesh3DLoader(File) - Constructor for class mgui.io.domestic.shapes.Mesh3DLoader
 
Mesh3DWriter - Class in mgui.io.domestic.shapes
Default writer for a Mesh3DInt object.
Mesh3DWriter() - Constructor for class mgui.io.domestic.shapes.Mesh3DWriter
 
Mesh3DWriter(File) - Constructor for class mgui.io.domestic.shapes.Mesh3DWriter
 
meshChanged() - Method in class mgui.io.domestic.shapes.MeshOptionsDialogBox
 
meshChanged() - Method in class mgui.io.domestic.shapes.SurfaceDataOutputDialogBox
 
MeshDataMaskOptions - Class in mgui.interfaces.shapes.mesh
 
MeshDataMaskOptions() - Constructor for class mgui.interfaces.shapes.mesh.MeshDataMaskOptions
 
MeshDataMaskOptionsDialog - Class in mgui.interfaces.shapes.mesh
 
MeshDataMaskOptionsDialog() - Constructor for class mgui.interfaces.shapes.mesh.MeshDataMaskOptionsDialog
 
MeshDataMaskOptionsDialog(JFrame, MeshDataMaskOptions, InterfacePanel) - Constructor for class mgui.interfaces.shapes.mesh.MeshDataMaskOptionsDialog
 
MeshDataOptions - Class in mgui.interfaces.shapes.mesh
 
MeshDataOptions() - Constructor for class mgui.interfaces.shapes.mesh.MeshDataOptions
 
MeshDataThresholdOptions - Class in mgui.interfaces.shapes.mesh
 
MeshDataThresholdOptions() - Constructor for class mgui.interfaces.shapes.mesh.MeshDataThresholdOptions
 
MeshDataThresholdOptionsDialog - Class in mgui.interfaces.shapes.mesh
 
MeshDataThresholdOptionsDialog() - Constructor for class mgui.interfaces.shapes.mesh.MeshDataThresholdOptionsDialog
 
MeshDataThresholdOptionsDialog(JFrame, MeshDataThresholdOptions) - Constructor for class mgui.interfaces.shapes.mesh.MeshDataThresholdOptionsDialog
 
MeshDecimation - Class in mgui.geometry.mesh
Utility class for specialized functions dealing with mesh decimation.
MeshDecimation() - Constructor for class mgui.geometry.mesh.MeshDecimation
 
MeshEdge - Class in mgui.geometry.mesh
Represents an edge in a mesh as a reference to its one or two adjacent triangular faces.
MeshEdge(int, int, int, int) - Constructor for class mgui.geometry.mesh.MeshEdge
 
MeshEdgeSet - Class in mgui.geometry.mesh
Represents a mesh in terms of triangles and edges.
MeshEdgeSet(Mesh3D) - Constructor for class mgui.geometry.mesh.MeshEdgeSet
 
MeshEngine - Class in mgui.geometry.mesh
Engine for performing mesh-based algorithms.
MeshEngine() - Constructor for class mgui.geometry.mesh.MeshEngine
 
MeshFace3D() - Constructor for class mgui.geometry.Mesh3D.MeshFace3D
 
MeshFace3D(int, int, int) - Constructor for class mgui.geometry.Mesh3D.MeshFace3D
 
MeshFace3D(Mesh3D.MeshFace3D) - Constructor for class mgui.geometry.Mesh3D.MeshFace3D
 
MeshFunctionException - Exception in mgui.geometry.mesh
 
MeshFunctionException() - Constructor for exception mgui.geometry.mesh.MeshFunctionException
 
MeshFunctionException(String) - Constructor for exception mgui.geometry.mesh.MeshFunctionException
 
MeshFunctions - Class in mgui.geometry.mesh
Utility class containing static methods that perform some operation upon Mesh3D shape objects.
MeshFunctions() - Constructor for class mgui.geometry.mesh.MeshFunctions
 
MeshFunctions.IndexedPoint3f - Class in mgui.geometry.mesh
 
MeshInflation - Class in mgui.geometry.mesh
 
MeshInflation() - Constructor for class mgui.geometry.mesh.MeshInflation
 
MeshOptionsDialogBox - Class in mgui.io.domestic.shapes
 
MeshOptionsDialogBox() - Constructor for class mgui.io.domestic.shapes.MeshOptionsDialogBox
 
MeshOptionsDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.domestic.shapes.MeshOptionsDialogBox
 
MeshPlaneMaskOptions - Class in mgui.interfaces.shapes.mesh
 
MeshPlaneMaskOptions() - Constructor for class mgui.interfaces.shapes.mesh.MeshPlaneMaskOptions
 
MeshPlaneMaskOptionsDialog - Class in mgui.interfaces.shapes.mesh
 
MeshPlaneMaskOptionsDialog(JFrame, MeshPlaneMaskOptions, InterfacePanel) - Constructor for class mgui.interfaces.shapes.mesh.MeshPlaneMaskOptionsDialog
 
MeshSmoothing - Class in mgui.geometry.mesh
Contains static methods for all mesh smoothing algorithms.
MeshSmoothing() - Constructor for class mgui.geometry.mesh.MeshSmoothing
 
MeshSubdivision - Class in mgui.geometry.mesh
Contains static methods for all mesh subdivision algorithms.
MeshSubdivision() - Constructor for class mgui.geometry.mesh.MeshSubdivision
 
MeshSubmeshOptions - Class in mgui.interfaces.shapes.mesh
 
MeshSubmeshOptions() - Constructor for class mgui.interfaces.shapes.mesh.MeshSubmeshOptions
 
MeshSubmeshOptionsDialog - Class in mgui.interfaces.shapes.mesh
 
MeshSubmeshOptionsDialog() - Constructor for class mgui.interfaces.shapes.mesh.MeshSubmeshOptionsDialog
 
MeshTriangle - Class in mgui.geometry.mesh
Represents a triangular mesh face, defined by three edges and an index referencing a Mesh3D object
MeshTriangle(int) - Constructor for class mgui.geometry.mesh.MeshTriangle
 
MeshTriangle(int, MeshEdge, MeshEdge, MeshEdge) - Constructor for class mgui.geometry.mesh.MeshTriangle
 
message - Variable in class mgui.interfaces.gui.AbstractProgressUpdater
 
message - Variable in class mgui.interfaces.tools.dialogs.DialogTool
 
messageStr - Variable in class mgui.interfaces.shapes.Text2DIntMouseCoords
 
metadata - Variable in class mgui.io.standard.nifti.NiftiVolumeWriter
 
mgui.build - package mgui.build
 
mgui.classes - package mgui.classes
Functions operating on classes, extending Class.java
mgui.collections - package mgui.collections
 
mgui.command - package mgui.command
 
mgui.datasources - package mgui.datasources
This package contains the core classes for data source functionality.
mgui.datasources.mysql - package mgui.datasources.mysql
Data source classes specific to MySQL functionality.
mgui.datasources.odbc - package mgui.datasources.odbc
Data source classes specific to ODBC functionality.
mgui.datasources.postgresql - package mgui.datasources.postgresql
Data source classes specific to PostgreSQL functionality.
mgui.datasources.tinysql - package mgui.datasources.tinysql
Data source classes specific to TinySQL functionality.
mgui.datasources.util - package mgui.datasources.util
Utility classes for operations on data sources.
mgui.geometry.mesh - package mgui.geometry.mesh
Provides classes representing and operating on 3D mesh shapes.
mgui.geometry.neuro.connectivity - package mgui.geometry.neuro.connectivity
 
mgui.geometry.neuro.mesh - package mgui.geometry.neuro.mesh
 
mgui.geometry.polygon - package mgui.geometry.polygon
Provides classes for operating on 2D and 3D polygon shapes.
mgui.geometry.util - package mgui.geometry.util
Uility classes for geometric operations.
mgui.geometry.volume - package mgui.geometry.volume
Provides classes for representing and operating on 3D volume shapes.
mgui.graphs.networks - package mgui.graphs.networks
Classes representing network graphs.
mgui.image.util - package mgui.image.util
Utility classes for operations on 2D and 3D images.
mgui.interfaces.attributes - package mgui.interfaces.attributes
Provides a standard updatable attribute object which can fire events for all interface objects.
mgui.interfaces.attributes.table - package mgui.interfaces.attributes.table
Classes allowing object attributes to be interacted with via a JTable.
mgui.interfaces.attributes.tree - package mgui.interfaces.attributes.tree
Classes allowing object attributes to be interfaced with via a JTree.
mgui.interfaces.attributes.video - package mgui.interfaces.attributes.video
Classes allowing video tasks to read/modify object attributes.
mgui.interfaces.cocomac - package mgui.interfaces.cocomac
Provides interfaces with the CoCoMac database.
mgui.interfaces.console - package mgui.interfaces.console
Provides an interactive system console (currently view only).
mgui.interfaces.datasources - package mgui.interfaces.datasources
This package provides interface objects which allow the user to interface with the core data source classes.
mgui.interfaces.datasources.tinysql - package mgui.interfaces.datasources.tinysql
 
mgui.interfaces.events - package mgui.interfaces.events
Defines events on interface objects.
mgui.interfaces.exec - package mgui.interfaces.exec
 
mgui.interfaces.frames - package mgui.interfaces.frames
Provides a model/session interface via a JFrame.
mgui.interfaces.graphics - package mgui.interfaces.graphics
Provides graphical windows for user interaction with model objects.
mgui.interfaces.graphics.util - package mgui.interfaces.graphics.util
Utility classes operating on 2D and 3D graphics objects.
mgui.interfaces.graphics.video - package mgui.interfaces.graphics.video
Provides classes to generate videos from graphics windows.
mgui.interfaces.graphics.video.xml - package mgui.interfaces.graphics.video.xml
XML format I/O operations on video objects.
mgui.interfaces.graphs - package mgui.interfaces.graphs
Provides an interface for user interaction with graph objects.
mgui.interfaces.graphs.layouts - package mgui.interfaces.graphs.layouts
Specifies layouts for 2D and 3D graph rendering.
mgui.interfaces.graphs.shapes - package mgui.interfaces.graphs.shapes
Specifies shapes for 2D and 3D graph rendering.
mgui.interfaces.graphs.tree - package mgui.interfaces.graphs.tree
 
mgui.interfaces.graphs.util - package mgui.interfaces.graphs.util
 
mgui.interfaces.gui - package mgui.interfaces.gui
 
mgui.interfaces.io - package mgui.interfaces.io
This package contains all classes which perform input/output functions.
mgui.interfaces.io.temp - package mgui.interfaces.io.temp
 
mgui.interfaces.layouts - package mgui.interfaces.layouts
 
mgui.interfaces.logs - package mgui.interfaces.logs
Provides logging operations (console / file).
mgui.interfaces.maps - package mgui.interfaces.maps
Provides a set a maps for use by ModelGUI objects.
mgui.interfaces.math - package mgui.interfaces.math
Provides an abstract interface allowing arithmetic functions to be applied to object data (e.g., vertex data for shapes).
mgui.interfaces.menus - package mgui.interfaces.menus
 
mgui.interfaces.models - package mgui.interfaces.models
Base classes for specifying dynamic models.
mgui.interfaces.neuro - package mgui.interfaces.neuro
 
mgui.interfaces.neuro.imaging.camino - package mgui.interfaces.neuro.imaging.camino
 
mgui.interfaces.pipelines - package mgui.interfaces.pipelines
This package provides interfaces for user interaction with pipelines.
mgui.interfaces.pipelines.libraries - package mgui.interfaces.pipelines.libraries
 
mgui.interfaces.pipelines.trees - package mgui.interfaces.pipelines.trees
 
mgui.interfaces.plots - package mgui.interfaces.plots
Provides 2D and 3D plotting functionality.
mgui.interfaces.plots.mgui - package mgui.interfaces.plots.mgui
 
mgui.interfaces.plots.osp - package mgui.interfaces.plots.osp
Plots using the Open Source Physics (OSP) library.
mgui.interfaces.plots.sgt - package mgui.interfaces.plots.sgt
Plots using the Scientific Graphics Toolkit (SGT) library.
mgui.interfaces.projects - package mgui.interfaces.projects
Provides an interface for projects, which specify file/URL organization and I/O operations
mgui.interfaces.projects.util - package mgui.interfaces.projects.util
Utility classes operating on projects.
mgui.interfaces.queries - package mgui.interfaces.queries
Provides querying functionality for interface objects.
mgui.interfaces.queries.tables - package mgui.interfaces.queries.tables
Allows query results to be displayed as a JTable.
mgui.interfaces.shapes.attributes - package mgui.interfaces.shapes.attributes
 
mgui.interfaces.shapes.datasources - package mgui.interfaces.shapes.datasources
 
mgui.interfaces.shapes.dynamic - package mgui.interfaces.shapes.dynamic
 
mgui.interfaces.shapes.graphs - package mgui.interfaces.shapes.graphs
 
mgui.interfaces.shapes.graphs.util - package mgui.interfaces.shapes.graphs.util
 
mgui.interfaces.shapes.mesh - package mgui.interfaces.shapes.mesh
 
mgui.interfaces.shapes.neuro - package mgui.interfaces.shapes.neuro
 
mgui.interfaces.shapes.paths - package mgui.interfaces.shapes.paths
 
mgui.interfaces.shapes.queries - package mgui.interfaces.shapes.queries
 
mgui.interfaces.shapes.selection - package mgui.interfaces.shapes.selection
 
mgui.interfaces.shapes.trees - package mgui.interfaces.shapes.trees
 
mgui.interfaces.shapes.util - package mgui.interfaces.shapes.util
 
mgui.interfaces.shapes.video - package mgui.interfaces.shapes.video
 
mgui.interfaces.shapes.volume - package mgui.interfaces.shapes.volume
 
mgui.interfaces.startup - package mgui.interfaces.startup
 
mgui.interfaces.stats - package mgui.interfaces.stats
Provides general statistics operations on interface objects.
mgui.interfaces.tables - package mgui.interfaces.tables
Provides object interaction via a JTable.
mgui.interfaces.tools - package mgui.interfaces.tools
Provides a framework for "tool" objects, which allow the user to modify or interrogate model objects.
mgui.interfaces.tools.datasources - package mgui.interfaces.tools.datasources
 
mgui.interfaces.tools.dialogs - package mgui.interfaces.tools.dialogs
 
mgui.interfaces.tools.graphics - package mgui.interfaces.tools.graphics
 
mgui.interfaces.tools.graphs - package mgui.interfaces.tools.graphs
 
mgui.interfaces.tools.layouts - package mgui.interfaces.tools.layouts
 
mgui.interfaces.tools.plots - package mgui.interfaces.tools.plots
 
mgui.interfaces.tools.queries - package mgui.interfaces.tools.queries
 
mgui.interfaces.tools.shapes - package mgui.interfaces.tools.shapes
 
mgui.interfaces.tools.shapes.util - package mgui.interfaces.tools.shapes.util
 
mgui.interfaces.transfers - package mgui.interfaces.transfers
 
mgui.interfaces.trees - package mgui.interfaces.trees
Provides object interaction via a JTree
mgui.interfaces.trees.util - package mgui.interfaces.trees.util
Utility classes operating on tree objects.
mgui.interfaces.unix - package mgui.interfaces.unix
Provides an interface with UNIX-style operating systems.
mgui.interfaces.util - package mgui.interfaces.util
Utility classes for general operations.
mgui.interfaces.variables - package mgui.interfaces.variables
 
mgui.interfaces.variables.tables - package mgui.interfaces.variables.tables
 
mgui.interfaces.xml - package mgui.interfaces.xml
 
mgui.io.domestic.attributes - package mgui.io.domestic.attributes
 
mgui.io.domestic.datasources - package mgui.io.domestic.datasources
 
mgui.io.domestic.graphs - package mgui.io.domestic.graphs
 
mgui.io.domestic.graphs.xml - package mgui.io.domestic.graphs.xml
 
mgui.io.domestic.maps - package mgui.io.domestic.maps
 
mgui.io.domestic.network - package mgui.io.domestic.network
 
mgui.io.domestic.pipelines - package mgui.io.domestic.pipelines
 
mgui.io.domestic.printing - package mgui.io.domestic.printing
 
mgui.io.domestic.shapes - package mgui.io.domestic.shapes
 
mgui.io.domestic.shapes.xml - package mgui.io.domestic.shapes.xml
 
mgui.io.domestic.variables - package mgui.io.domestic.variables
 
mgui.io.domestic.videos - package mgui.io.domestic.videos
 
mgui.io.domestic.views - package mgui.io.domestic.views
 
mgui.io.foreign.amira - package mgui.io.foreign.amira
 
mgui.io.foreign.analyze - package mgui.io.foreign.analyze
 
mgui.io.foreign.camino - package mgui.io.foreign.camino
 
mgui.io.foreign.camino.xml - package mgui.io.foreign.camino.xml
 
mgui.io.foreign.caret - package mgui.io.foreign.caret
 
mgui.io.foreign.duff - package mgui.io.foreign.duff
 
mgui.io.foreign.freesurfer - package mgui.io.foreign.freesurfer
 
mgui.io.foreign.fsl - package mgui.io.foreign.fsl
 
mgui.io.foreign.interfile - package mgui.io.foreign.interfile
 
mgui.io.foreign.minc - package mgui.io.foreign.minc
 
mgui.io.foreign.mricro - package mgui.io.foreign.mricro
 
mgui.io.foreign.pajek - package mgui.io.foreign.pajek
 
mgui.io.foreign.trackvis - package mgui.io.foreign.trackvis
 
mgui.io.foreign.vol - package mgui.io.foreign.vol
 
mgui.io.foreign.wavefront - package mgui.io.foreign.wavefront
 
mgui.io.foreign.wunil - package mgui.io.foreign.wunil
 
mgui.io.imaging - package mgui.io.imaging
 
mgui.io.standard.gifti - package mgui.io.standard.gifti
 
mgui.io.standard.gifti.xml - package mgui.io.standard.gifti.xml
 
mgui.io.standard.imaging - package mgui.io.standard.imaging
 
mgui.io.standard.json - package mgui.io.standard.json
 
mgui.io.standard.nifti - package mgui.io.standard.nifti
 
mgui.io.standard.nifti.util - package mgui.io.standard.nifti.util
 
mgui.io.standard.xml - package mgui.io.standard.xml
 
mgui.io.standard.xml.svg - package mgui.io.standard.xml.svg
 
mgui.io.standard.xml.x3d - package mgui.io.standard.xml.x3d
 
mgui.io.util - package mgui.io.util
Utility classes for performing input/output operations.
mgui.models.dynamic - package mgui.models.dynamic
Provides a framework for dynamic modelling (4D) functionality in ModelGUI.
mgui.models.dynamic.functions - package mgui.models.dynamic.functions
 
mgui.models.dynamic.ode - package mgui.models.dynamic.ode
 
mgui.models.dynamic.stats - package mgui.models.dynamic.stats
 
mgui.models.environments - package mgui.models.environments
 
mgui.models.events - package mgui.models.events
 
mgui.models.exceptions - package mgui.models.exceptions
 
mgui.models.networks - package mgui.models.networks
 
mgui.models.networks.components - package mgui.models.networks.components
 
mgui.models.updaters - package mgui.models.updaters
 
mgui.morph.sections - package mgui.morph.sections
 
mgui.morph.sections.util - package mgui.morph.sections.util
 
mgui.neuro.components - package mgui.neuro.components
 
mgui.neuro.components.compartments - package mgui.neuro.components.compartments
 
mgui.neuro.components.cortical - package mgui.neuro.components.cortical
 
mgui.neuro.components.cortical.functions - package mgui.neuro.components.cortical.functions
 
mgui.neuro.components.cortical.simple - package mgui.neuro.components.cortical.simple
 
mgui.neuro.components.simple - package mgui.neuro.components.simple
 
mgui.neuro.components.types - package mgui.neuro.components.types
 
mgui.neuro.exceptions - package mgui.neuro.exceptions
 
mgui.neuro.graphs - package mgui.neuro.graphs
 
mgui.neuro.imaging.camino - package mgui.neuro.imaging.camino
 
mgui.neuro.imaging.camino.tasks - package mgui.neuro.imaging.camino.tasks
 
mgui.neuro.imaging.tasks - package mgui.neuro.imaging.tasks
 
mgui.neuro.networks - package mgui.neuro.networks
 
mgui.neuro.stats - package mgui.neuro.stats
 
mgui.neuro.updaters - package mgui.neuro.updaters
 
mgui.numbers - package mgui.numbers
 
mgui.pipelines - package mgui.pipelines
Provides a framework for defining and running processing pipelines in the ModelGUI environment.
mgui.stats - package mgui.stats
 
mgui.util - package mgui.util
 
MguiBoolean - Class in mgui.numbers
Implementation of MguiNumber for values of type boolean.
MguiBoolean() - Constructor for class mgui.numbers.MguiBoolean
 
MguiBoolean(boolean) - Constructor for class mgui.numbers.MguiBoolean
 
MguiBoolean(String) - Constructor for class mgui.numbers.MguiBoolean
 
MguiDouble - Class in mgui.numbers
Implementation of MguiNumber for values of type double.
MguiDouble() - Constructor for class mgui.numbers.MguiDouble
 
MguiDouble(double) - Constructor for class mgui.numbers.MguiDouble
 
MguiDouble(String) - Constructor for class mgui.numbers.MguiDouble
 
MguiDouble(MguiNumber) - Constructor for class mgui.numbers.MguiDouble
 
MguiExec - Class in mgui.interfaces.exec
Simple launcher for a modelGUI session which allows the user to specify an init file via the InitFrame.
MguiExec() - Constructor for class mgui.interfaces.exec.MguiExec
 
MguiFloat - Class in mgui.numbers
Implementation of MguiNumber for values of type float.
MguiFloat() - Constructor for class mgui.numbers.MguiFloat
 
MguiFloat(double) - Constructor for class mgui.numbers.MguiFloat
 
MguiFloat(String) - Constructor for class mgui.numbers.MguiFloat
 
MguiFloat(MguiNumber) - Constructor for class mgui.numbers.MguiFloat
 
MguiInteger - Class in mgui.numbers
Implementation of MguiNumber for values of type int.
MguiInteger() - Constructor for class mgui.numbers.MguiInteger
 
MguiInteger(double) - Constructor for class mgui.numbers.MguiInteger
 
MguiInteger(int) - Constructor for class mgui.numbers.MguiInteger
 
MguiInteger(String) - Constructor for class mgui.numbers.MguiInteger
 
MguiLong - Class in mgui.numbers
Implementation of MguiNumber for values of type long.
MguiLong() - Constructor for class mgui.numbers.MguiLong
 
MguiLong(double) - Constructor for class mgui.numbers.MguiLong
 
MguiLong(int) - Constructor for class mgui.numbers.MguiLong
 
MguiLong(String) - Constructor for class mgui.numbers.MguiLong
 
MguiNumber - Interface in mgui.numbers
Interface for numbers used in ModelGUI.
MguiPlotAxis - Class in mgui.interfaces.plots.mgui
An axis for an InterfaceMguiPlot object.
MguiPlotAxis() - Constructor for class mgui.interfaces.plots.mgui.MguiPlotAxis
 
MguiPlotEvent - Class in mgui.interfaces.plots.mgui
An event on an InterfacePlotMgui object.
MguiPlotEvent(InterfacePlotMgui) - Constructor for class mgui.interfaces.plots.mgui.MguiPlotEvent
 
MguiPlotLayout - Class in mgui.interfaces.plots.mgui
Layout class for rendering an InterfaceMguiPlot object.
MguiPlotLayout() - Constructor for class mgui.interfaces.plots.mgui.MguiPlotLayout
 
MguiShort - Class in mgui.numbers
Implementation of MguiNumber for values of type short.
MguiShort() - Constructor for class mgui.numbers.MguiShort
 
MguiShort(double) - Constructor for class mgui.numbers.MguiShort
 
MguiShort(short) - Constructor for class mgui.numbers.MguiShort
 
MguiShort(String) - Constructor for class mgui.numbers.MguiShort
 
MguiStart - Class in mgui.interfaces.exec
Simple launcher for a modelGUI session.
MguiStart() - Constructor for class mgui.interfaces.exec.MguiStart
 
MGZ_TYPE_FLOAT - Static variable in class mgui.io.foreign.fsl.FSLVolumeMetadata
 
MGZ_TYPE_INT - Static variable in class mgui.io.foreign.fsl.FSLVolumeMetadata
 
MGZ_TYPE_SHORT - Static variable in class mgui.io.foreign.fsl.FSLVolumeMetadata
 
MGZ_TYPE_UCHAR - Static variable in class mgui.io.foreign.fsl.FSLVolumeMetadata
 
mid_contains - Variable in class mgui.interfaces.neuro.CorticalThicknessOptions
 
middle_mesh - Variable in class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt
 
midVal - Variable in class mgui.interfaces.shapes.mesh.MeshDataThresholdOptions
 
min - Variable in class mgui.interfaces.maps.ContinuousColourBar
 
min - Variable in class mgui.interfaces.shapes.mesh.MeshDataThresholdOptions
 
min - Variable in class mgui.io.domestic.network.CorticalNetworkMatrixInOptions
 
min_dist_B_IS - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
 
min_dist_OS_S - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
 
min_intensity - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
 
min_nodes - Variable in class mgui.io.domestic.shapes.PolygonSet3DInputOptions
 
min_nodes - Variable in class mgui.io.domestic.shapes.PolygonSet3DLoader
 
min_pct - Variable in class mgui.interfaces.neuro.CorticalThicknessOptions
 
min_plateau_length - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
 
min_pt - Variable in class mgui.interfaces.graphs.layouts.Coordinate3DLayout
 
min_pt - Variable in class mgui.interfaces.graphs.layouts.CoordinateLayout
 
min_pt - Variable in class mgui.interfaces.shapes.graphs.util.Graph2DLayout
 
min_screen_dim - Variable in class mgui.interfaces.graphics.InterfaceGraphic3D
 
min_seg_length - Variable in class mgui.interfaces.tools.shapes.ToolCreateMeshFromPolylinesOptions
 
min_skull_width - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
 
min_slope - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
 
min_x - Variable in class mgui.interfaces.plots.sgt.SgtPlotLayoutOptions
Start of X axis in physical units
min_y - Variable in class mgui.interfaces.plots.sgt.SgtPlotLayoutOptions
Start of Y axis in physical units
min_zoom - Variable in class mgui.interfaces.maps.Map2D
 
minAlpha - Variable in class mgui.io.domestic.shapes.VolumeFileLoader
 
minAlpha - Variable in class mgui.io.foreign.vol.VolumeInputOptions
 
minButtonSize - Variable in class mgui.interfaces.InterfaceDialogBox
 
MincSurfaceDataInDialogBox - Class in mgui.io.foreign.minc
Input data for a MINC (obj) surface
MincSurfaceDataInDialogBox(JFrame, InterfaceIOPanel, SurfaceDataInputOptions) - Constructor for class mgui.io.foreign.minc.MincSurfaceDataInDialogBox
 
MincSurfaceDataInOptions - Class in mgui.io.foreign.minc
 
MincSurfaceDataInOptions() - Constructor for class mgui.io.foreign.minc.MincSurfaceDataInOptions
 
MincSurfaceDataLoader - Class in mgui.io.foreign.minc
 
MincSurfaceDataLoader() - Constructor for class mgui.io.foreign.minc.MincSurfaceDataLoader
 
MincSurfaceDataLoader(int) - Constructor for class mgui.io.foreign.minc.MincSurfaceDataLoader
 
MincSurfaceDataLoader(File) - Constructor for class mgui.io.foreign.minc.MincSurfaceDataLoader
 
MincSurfaceDataLoader(File, int) - Constructor for class mgui.io.foreign.minc.MincSurfaceDataLoader
 
MincSurfaceDataOutDialogBox - Class in mgui.io.foreign.minc
 
MincSurfaceDataOutDialogBox() - Constructor for class mgui.io.foreign.minc.MincSurfaceDataOutDialogBox
 
MincSurfaceDataOutDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.foreign.minc.MincSurfaceDataOutDialogBox
 
MincSurfaceDataOutOptions - Class in mgui.io.foreign.minc
 
MincSurfaceDataOutOptions() - Constructor for class mgui.io.foreign.minc.MincSurfaceDataOutOptions
 
MincSurfaceDataWriter - Class in mgui.io.foreign.minc
Writes a Minc surface data file, which is simply a text file list of vertex-wise values, one per line, corresponding to a surface mesh.
MincSurfaceDataWriter() - Constructor for class mgui.io.foreign.minc.MincSurfaceDataWriter
 
MincSurfaceDataWriter(File) - Constructor for class mgui.io.foreign.minc.MincSurfaceDataWriter
 
MincSurfaceDataWriter(File, String) - Constructor for class mgui.io.foreign.minc.MincSurfaceDataWriter
 
MincSurfaceDataWriter(String) - Constructor for class mgui.io.foreign.minc.MincSurfaceDataWriter
 
MincSurfaceLoader - Class in mgui.io.foreign.minc
Reads a MINC obj file into a Mesh3D shape.
MincSurfaceLoader() - Constructor for class mgui.io.foreign.minc.MincSurfaceLoader
 
MincSurfaceLoader(File) - Constructor for class mgui.io.foreign.minc.MincSurfaceLoader
 
MincSurfaceOutDialog - Class in mgui.io.foreign.minc
 
MincSurfaceOutDialog(JFrame, InterfaceDialogUpdater) - Constructor for class mgui.io.foreign.minc.MincSurfaceOutDialog
 
MincSurfaceWriter - Class in mgui.io.foreign.minc
Writes a mesh to disk in MINC obj format.
MincSurfaceWriter() - Constructor for class mgui.io.foreign.minc.MincSurfaceWriter
 
MincSurfaceWriter(File) - Constructor for class mgui.io.foreign.minc.MincSurfaceWriter
 
MincTransformLoader - Class in mgui.io.foreign.minc
 
MincTransformLoader(File) - Constructor for class mgui.io.foreign.minc.MincTransformLoader
 
minDistance - Variable in class mgui.interfaces.maps.Camera3D
 
minimum - Variable in class mgui.interfaces.gui.AbstractProgressUpdater
 
minimumLayoutSize(Container) - Method in class au.edu.unsw.cse.StackLayout
 
minimumLayoutSize(Container) - Method in class mgui.interfaces.layouts.LineLayout
 
minimumSize - Variable in class mgui.interfaces.layouts.LineLayout
 
minMainSize - Variable in class mgui.interfaces.InterfaceDialogBox
 
minThreshold - Variable in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
 
MINUS_X - Static variable in interface mgui.io.foreign.vol.VolRendConstants
 
MINUS_Y - Static variable in interface mgui.io.foreign.vol.VolRendConstants
 
MINUS_Z - Static variable in interface mgui.io.foreign.vol.VolRendConstants
 
minWidth - Variable in class mgui.interfaces.InterfaceDialogBox
 
minX - Variable in class mgui.stats.Histogram
 
minY - Variable in class mgui.stats.Histogram
 
missing_value - Variable in class mgui.io.foreign.freesurfer.FreesurferVertexDataInOptions
 
mode - Variable in class mgui.interfaces.gui.InterfaceComboBox
 
mode - Variable in class mgui.interfaces.gui.InterfaceComboBoxBak
 
mode - Variable in class mgui.interfaces.tools.shapes.ToolSelectShape2D
 
mode - Variable in class mgui.interfaces.tools.shapes.ToolSelectShape3D
 
mode - Variable in class mgui.models.environments.SimpleEnvironment
 
MODE_TEST - Static variable in class mgui.neuro.networks.AbstractNeuralNet
 
MODE_TRAIN - Static variable in class mgui.neuro.networks.AbstractNeuralNet
 
model - Variable in class mgui.interfaces.graphics.InterfaceGraphic3D
 
model - Variable in class mgui.interfaces.maps.DiscreteColourMapTable
 
model - Variable in class mgui.interfaces.shapes.selection.ShapeSelectionSet
 
model - Variable in class mgui.interfaces.shapes.ShapeSet3DInt
 
model - Variable in class mgui.io.standard.xml.svg.SVGFileInterface
 
MODEL - Static variable in class mgui.interfaces.tools.graphics.ToolZoomExt2D
 
model_is_loading - Variable in class mgui.io.domestic.shapes.xml.ShapeModel3DXMLHandler
 
model_listeners - Variable in class mgui.interfaces.shapes.ShapeModel3D
 
model_name - Variable in class mgui.io.domestic.shapes.xml.ShapeModel3DXMLHandler
 
model_node - Variable in class mgui.interfaces.shapes.ShapeModel3D
 
model_unit - Variable in class mgui.io.domestic.shapes.xml.ShapeModel3DXMLHandler
 
ModelDestroyed - mgui.interfaces.shapes.ShapeModelEvent.EventType
 
modelExists(ShapeModel3D) - Method in class mgui.interfaces.InterfaceWorkspace
 
models - Variable in class mgui.interfaces.InterfaceWorkspace
 
modelScalpAndSkull(ScalpAndSkullModelOptions, InterfaceProgressBar) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
 
modelScalpAndSkullJob(ScalpAndSkullModelOptions, InterfaceProgressBar) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
 
modelScalpAndSkullJob(ScalpAndSkullModelOptions, InterfaceProgressBar, String) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
 
modelScalpAndSkullJob(ScalpAndSkullModelOptions, InterfaceProgressBar, String, boolean) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
 
modelSet - Variable in class mgui.interfaces.shapes.ShapeModel3D
 
ModelSetChanged - mgui.interfaces.shapes.ShapeModelEvent.EventType
 
modelSkullAndScalp2() - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
 
modelSkullAndScalp2Blocking(ScalpAndSkullModelOptions, String, String, String, String, int[][], ArrayList<Double>, boolean) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
 
Modified - mgui.interfaces.graphics.GraphicEvent.EventType
 
Modified - mgui.interfaces.graphics.WindowEvent.EventType
 
modifiesShapeSet() - Method in class mgui.interfaces.shapes.util.ShapeEvent
 
moreControls(Button) - Method in class au.edu.unsw.cse.Viewer
show controls for colour, animation, etc
MORPH_ALL - Static variable in class mgui.morph.sections.MorphEngine
 
MORPH_MESH - Static variable in class mgui.morph.sections.MorphEngine
 
MORPH_SECTIONS - Static variable in class mgui.morph.sections.MorphEngine
 
morphAttr - Variable in class mgui.morph.sections.MorphEngine
 
MorphDrawEngine - Class in mgui.morph.sections
 
MorphDrawEngine() - Constructor for class mgui.morph.sections.MorphDrawEngine
 
MorphDrawEngine(Map2D) - Constructor for class mgui.morph.sections.MorphDrawEngine
 
MorphEngine - Class in mgui.morph.sections
Engine class implementing algorithms to create polygons which represent the intermediate positions of a morphing between two polygons on adjacent sections.
MorphEngine() - Constructor for class mgui.morph.sections.MorphEngine
 
MorphNode2D - Class in mgui.morph.sections
 
MorphNode2D() - Constructor for class mgui.morph.sections.MorphNode2D
 
MorphNode2D(Point2f) - Constructor for class mgui.morph.sections.MorphNode2D
 
MorphNodeMap2D - Class in mgui.morph.sections
 
MorphNodeMap2D() - Constructor for class mgui.morph.sections.MorphNodeMap2D
 
MorphNodeMap2D(boolean) - Constructor for class mgui.morph.sections.MorphNodeMap2D
 
MorphNodeMap2D(MorphNode2D, MorphNode2D, MapWeight) - Constructor for class mgui.morph.sections.MorphNodeMap2D
 
MorphNodeMap2D(MorphNode2D, MorphNode2D, MapWeight, boolean) - Constructor for class mgui.morph.sections.MorphNodeMap2D
 
MorphSections3DInt - Class in mgui.morph.sections
Class representing a set of intermediate sections (subsections), such that each subsection holds an iterative morphing representation from some source shape to some target shape.
MorphSections3DInt() - Constructor for class mgui.morph.sections.MorphSections3DInt
 
MorphSections3DInt(SectionSet3DInt, int) - Constructor for class mgui.morph.sections.MorphSections3DInt
 
MorphSectionSetIterator - Class in mgui.morph.sections.util
 
MorphSectionSetIterator(MorphSections3DInt) - Constructor for class mgui.morph.sections.util.MorphSectionSetIterator
 
MorrisLecarFunction - Class in mgui.neuro.components.cortical.functions
Regional cortical model based upon Morris and Lecar (1981), and Breakspear et al.
MorrisLecarFunction() - Constructor for class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
MotorNeuron - Interface in mgui.neuro.components
 
MOUSE_COORDS - Static variable in class mgui.interfaces.shapes.Text2DIntMouseCoords
 
mouse_listeners - Variable in class mgui.interfaces.InterfaceDisplayPanel
 
MOUSE_PICK_SHAPE - Static variable in class mgui.interfaces.shapes.Text2DIntMouseCoords
 
MOUSE_PICK_SHAPE_PROXIMITY - Static variable in class mgui.interfaces.shapes.Text2DIntMouseCoords
 
mouse_relay_listener - Variable in class mgui.interfaces.plots.InterfacePlotDisplay
 
mouseAdapter - Variable in class mgui.interfaces.graphics.InterfaceGraphic2DTextBox
 
mouseAdapter - Variable in class mgui.interfaces.graphics.InterfaceGraphicTextBox
 
mouseAdapter - Variable in class mgui.interfaces.tools.graphs.ToolGraphAdapter
 
mouseAdapter - Variable in class mgui.interfaces.tools.ToolInputMouseAdapter
 
MouseBehavior - Class in mgui.interfaces.tools
 
MouseBehavior() - Constructor for class mgui.interfaces.tools.MouseBehavior
 
mouseClicked(MouseEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow.GraphicButton
 
mouseClicked(MouseEvent) - Method in class mgui.interfaces.graphics.util.MouseRelayListener
 
mouseClicked(MouseEvent) - Method in class mgui.interfaces.InterfacePanel
 
mouseClicked(MouseEvent) - Method in class mgui.interfaces.io.temp.TempBitmapDrawer
 
mouseClicked(MouseEvent) - Method in class mgui.interfaces.layouts.CategoryTitle
 
mouseClicked(MouseEvent) - Method in class mgui.interfaces.maps.ContinuousColourBar
 
mouseClicked(MouseEvent) - Method in class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree
 
mouseClicked(MouseEvent) - Method in class mgui.interfaces.pipelines.trees.PipelineTree
 
mouseClicked(MouseEvent) - Method in class mgui.interfaces.stats.HistogramPlot
 
mouseClicked(MouseEvent) - Method in class mgui.interfaces.tables.InterfaceDataTable
 
mouseClicked(MouseEvent) - Method in class mgui.interfaces.tools.ToolBehavior3DAdapter
 
Mousedelta - Class in au.edu.unsw.cse
 
Mousedelta() - Constructor for class au.edu.unsw.cse.Mousedelta
 
mouseDown(Event, int, int) - Method in class au.edu.unsw.cse.Viewer
 
mouseDrag(Event, int, int) - Method in class au.edu.unsw.cse.Viewer
 
mouseDragged(MouseEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphic
 
mouseDragged(MouseEvent) - Method in class mgui.interfaces.graphics.util.MouseRelayListener
 
mouseDragged(MouseEvent) - Method in class mgui.interfaces.InterfacePanel
 
mouseDragged(MouseEvent) - Method in class mgui.interfaces.maps.ContinuousColourBar
 
mouseDragged(MouseEvent) - Method in class mgui.interfaces.stats.HistogramPlot
 
mouseDragged(MouseEvent) - Method in class mgui.interfaces.tools.ToolBehavior3DAdapter
 
mouseDragged(MouseEvent) - Method in class mgui.interfaces.trees.InterfaceTreePanel
 
mouseEnter(Event, int, int) - Method in class au.edu.unsw.cse.Applet3d
 
mouseEnter(Event, int, int) - Method in class au.edu.unsw.cse.AppletDepth
 
mouseEnter(Event, int, int) - Method in class au.edu.unsw.cse.AppletHull
 
mouseEnter(Event, int, int) - Method in class au.edu.unsw.cse.AppletPatch
 
mouseEntered(MouseEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow.GraphicButton
 
mouseEntered(MouseEvent) - Method in class mgui.interfaces.InterfacePanel
 
mouseEntered(MouseEvent) - Method in class mgui.interfaces.io.temp.TempBitmapDrawer
 
mouseEntered(MouseEvent) - Method in class mgui.interfaces.layouts.CategoryTitle
 
mouseEntered(MouseEvent) - Method in class mgui.interfaces.maps.ContinuousColourBar
 
mouseEntered(MouseEvent) - Method in class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree
 
mouseEntered(MouseEvent) - Method in class mgui.interfaces.pipelines.trees.PipelineTree
 
mouseEntered(MouseEvent) - Method in class mgui.interfaces.stats.HistogramPlot
 
mouseEvent - Variable in class mgui.interfaces.tools.ToolMouseEvent
 
mouseExit(Event, int, int) - Method in class au.edu.unsw.cse.Applet3d
 
mouseExited(MouseEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow.GraphicButton
 
mouseExited(MouseEvent) - Method in class mgui.interfaces.InterfacePanel
 
mouseExited(MouseEvent) - Method in class mgui.interfaces.io.temp.TempBitmapDrawer
 
mouseExited(MouseEvent) - Method in class mgui.interfaces.layouts.CategoryTitle
 
mouseExited(MouseEvent) - Method in class mgui.interfaces.maps.ContinuousColourBar
 
mouseExited(MouseEvent) - Method in class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree
 
mouseExited(MouseEvent) - Method in class mgui.interfaces.pipelines.trees.PipelineTree
 
mouseExited(MouseEvent) - Method in class mgui.interfaces.stats.HistogramPlot
 
mouseExited(MouseEvent) - Method in class mgui.interfaces.tables.InterfaceDataTable
 
MouseInfo - Class in au.edu.unsw.cse
This class is used to store the information about a collection of mouse movements
MouseInfo(int, int, int, int, int, int, int) - Constructor for class au.edu.unsw.cse.MouseInfo
 
mouseMoved(MouseEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphic
 
mouseMoved(MouseEvent) - Method in class mgui.interfaces.graphics.util.MouseRelayListener
 
mouseMoved(MouseEvent) - Method in class mgui.interfaces.InterfacePanel
 
mouseMoved(MouseEvent) - Method in class mgui.interfaces.maps.ContinuousColourBar
 
mouseMoved(MouseEvent) - Method in class mgui.interfaces.stats.HistogramPlot
 
mouseMoved(MouseEvent) - Method in class mgui.interfaces.tools.ToolBehavior3DAdapter
 
mouseMoved(MouseEvent) - Method in class mgui.interfaces.trees.InterfaceTreePanel
 
mousePressed(MouseEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow.GraphicButton
 
mousePressed(MouseEvent) - Method in class mgui.interfaces.graphics.util.MouseRelayListener
 
mousePressed(MouseEvent) - Method in class mgui.interfaces.InterfacePanel
 
mousePressed(MouseEvent) - Method in class mgui.interfaces.io.temp.TempBitmapDrawer
 
mousePressed(MouseEvent) - Method in class mgui.interfaces.layouts.CategoryTitle
 
mousePressed(MouseEvent) - Method in class mgui.interfaces.maps.ContinuousColourBar
 
mousePressed(MouseEvent) - Method in class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree
 
mousePressed(MouseEvent) - Method in class mgui.interfaces.pipelines.trees.PipelineTree
 
mousePressed(MouseEvent) - Method in class mgui.interfaces.stats.HistogramPlot
 
MouseRelayListener - Class in mgui.interfaces.graphics.util
Relays a mouse event from a child panel to the parent InterfaceGraphic.
MouseRelayListener(InterfaceGraphic<?>) - Constructor for class mgui.interfaces.graphics.util.MouseRelayListener
 
mouseReleased(MouseEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow.GraphicButton
 
mouseReleased(MouseEvent) - Method in class mgui.interfaces.graphics.util.MouseRelayListener
 
mouseReleased(MouseEvent) - Method in class mgui.interfaces.InterfacePanel
 
mouseReleased(MouseEvent) - Method in class mgui.interfaces.io.temp.TempBitmapDrawer
 
mouseReleased(MouseEvent) - Method in class mgui.interfaces.layouts.CategoryTitle
 
mouseReleased(MouseEvent) - Method in class mgui.interfaces.maps.ContinuousColourBar
 
mouseReleased(MouseEvent) - Method in class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree
 
mouseReleased(MouseEvent) - Method in class mgui.interfaces.pipelines.trees.PipelineTree
 
mouseReleased(MouseEvent) - Method in class mgui.interfaces.stats.HistogramPlot
 
mouseReleased(MouseEvent) - Method in class mgui.interfaces.tools.ToolBehavior3DAdapter
 
mouseUp(Event, int, int) - Method in class au.edu.unsw.cse.Viewer
 
mouseWheelMoved(MouseWheelEvent) - Method in class mgui.interfaces.graphics.util.MouseRelayListener
 
mouseWheelMoved(MouseWheelEvent) - Method in class mgui.interfaces.tools.ToolBehavior3DAdapter
 
moveChild(InterfaceTreeNode, int) - Method in class mgui.interfaces.trees.InterfaceTreeNode
 
moveDir(File, File) - Static method in class mgui.io.util.IoFunctions
Moves the directory dir and all its contents to the directory dest.
moveDir(File, File, boolean) - Static method in class mgui.io.util.IoFunctions
Move the directory dir and all its contents to the directory dest.
moveDir(File, File, boolean, ProgressUpdater) - Static method in class mgui.io.util.IoFunctions
Move the directory dir and all its contents to the directory dest.
moveDirContents(File, File) - Static method in class mgui.io.util.IoFunctions
Move the contents of directory dir (but not the directory itself) to the directory dest.
moveDirContents(File, File, boolean) - Static method in class mgui.io.util.IoFunctions
Move the contents of directory dir (but not the directory itself) to the directory dest.
moveDirContents(File, File, boolean, ProgressUpdater) - Static method in class mgui.io.util.IoFunctions
Move the contents of directory dir (but not the directory itself) to the directory dest.
moveFirst() - Method in class mgui.datasources.DataRecordSet
 
moveLast() - Method in class mgui.datasources.DataRecordSet
 
moveNext() - Method in class mgui.datasources.DataRecordSet
 
moveParticleByVariance(Mesh3D, MeshSmoothing.Particle) - Static method in class mgui.geometry.mesh.MeshSmoothing
 
moveParticleByVariance(Mesh3D, MeshSmoothing.Particle, boolean) - Static method in class mgui.geometry.mesh.MeshSmoothing
 
moveRelative(int) - Method in class mgui.datasources.DataRecordSet
 
moveSectionTo(Point3f) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
Set the current section to the one which is closest to point
moveShapeAfter(InterfaceShape, InterfaceShape) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
 
moveShapeAfter(Shape3DInt, Shape3DInt, boolean) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
Inserts inserted_shape at a position after target_shape in this list.
moveShapeBefore(InterfaceShape, InterfaceShape) - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
moveShapeBefore(InterfaceShape, InterfaceShape) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
 
moveShapeBefore(InterfaceShape, InterfaceShape) - Method in interface mgui.interfaces.shapes.ShapeSet
Moves the order of shape to the spot before target.
moveShapeBefore(InterfaceShape, InterfaceShape) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
 
moveShapeBefore(InterfaceShape, InterfaceShape) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
 
moveShapeBefore(Shape3DInt, Shape3DInt, boolean) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
Inserts inserted_shape at a position before target_shape in this list.
moveShapeBottom(Shape3DInt) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
Moves shape to the bottom of the rendering order
moveShapeDown(Shape3DInt) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
Moves shape down one in the rendering order
moveShapeTop(Shape3DInt) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
Moves shape to the top of the rendering order
moveShapeUp(Shape3DInt) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
Moves shape up one in the rendering order
moveTo(int) - Method in class mgui.datasources.DataRecordSet
 
MoveTo - Class in mgui.io.standard.xml.svg
 
MoveTo(SVGParser.Mode) - Constructor for class mgui.io.standard.xml.svg.MoveTo
 
MricroLutLoader - Class in mgui.io.foreign.mricro
 
MricroLutLoader() - Constructor for class mgui.io.foreign.mricro.MricroLutLoader
 
MricroLutLoader(File) - Constructor for class mgui.io.foreign.mricro.MricroLutLoader
 
MricroLutWriter - Class in mgui.io.foreign.mricro
Writes a discrete colour map to an MriCRO-compatible lookup table (LUT) file.
MricroLutWriter() - Constructor for class mgui.io.foreign.mricro.MricroLutWriter
 
MricroLutWriter(File) - Constructor for class mgui.io.foreign.mricro.MricroLutWriter
 
multiFileOptions - Variable in class mgui.io.standard.xml.svg.SVGInputOptions
 
MultiNode - mgui.interfaces.shapes.queries.InterfaceShapeQuery.QueryMode
 
MultiObject - mgui.interfaces.shapes.queries.InterfaceShapeQuery.QueryMode
 
multiply(double) - Method in class mgui.numbers.MguiBoolean
 
multiply(double) - Method in class mgui.numbers.MguiDouble
 
multiply(double) - Method in class mgui.numbers.MguiFloat
 
multiply(double) - Method in class mgui.numbers.MguiInteger
Multiplies this number by n.
multiply(double) - Method in class mgui.numbers.MguiLong
Multiplies this number by n.
multiply(double) - Method in interface mgui.numbers.MguiNumber
Update the value of this number by multiplying by n.
multiply(double) - Method in class mgui.numbers.MguiShort
Multiplies this number by n.
multiply(Quaternion) - Method in class au.edu.unsw.cse.Quaternion
 
multiply(MguiNumber) - Method in class mgui.numbers.MguiBoolean
 
multiply(MguiNumber) - Method in class mgui.numbers.MguiDouble
 
multiply(MguiNumber) - Method in class mgui.numbers.MguiFloat
 
multiply(MguiNumber) - Method in class mgui.numbers.MguiInteger
 
multiply(MguiNumber) - Method in class mgui.numbers.MguiLong
 
multiply(MguiNumber) - Method in interface mgui.numbers.MguiNumber
Update the value of this number by multiplying by n.
multiply(MguiNumber) - Method in class mgui.numbers.MguiShort
 
Multiply - mgui.geometry.volume.VolumeFunctions.Operation
 
multiTableFile - Variable in class mgui.io.standard.xml.svg.SVGInputOptions
 
MySQLDriver - Class in mgui.datasources.mysql
Specifies the driver for MySQL connectivity.
MySQLDriver() - Constructor for class mgui.datasources.mysql.MySQLDriver
 
MySQLDriver(String, String, String) - Constructor for class mgui.datasources.mysql.MySQLDriver
 
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