Index

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All Classes|All Packages

G

g - Variable in class au.edu.unsw.cse.View3d
 
g2d - Variable in class mgui.interfaces.graphics.util.DrawingEngine
 
gaussian_cutoff - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
 
GE_GENERAL - Static variable in class mgui.interfaces.graphs.InterfaceGraphEvent
 
GE_LABELS - Static variable in class mgui.interfaces.graphs.InterfaceGraphEvent
 
General - mgui.interfaces.graphics.GraphicEvent.EventType
 
General - mgui.interfaces.graphics.WindowEvent.EventType
 
General - mgui.interfaces.shapes.util.ShapeEvent.EventType
 
General - mgui.interfaces.trees.TreeEvent.EventType
 
generate_control_meshes - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
 
generateComposites() - Method in class mgui.interfaces.shapes.VolumeSet3DInt
This method updates the overlay composite Grid3D by sampling from all members and applying their transparency levels.
generateRayShapes(ArrayList<SampleRay>, String) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
Generates a vector 3D set from a list of sample rays; adds sample data to shapes.
geom_x - Variable in class mgui.io.domestic.shapes.VolumeInputOptions
 
geom_y - Variable in class mgui.io.domestic.shapes.VolumeInputOptions
 
geom_z - Variable in class mgui.io.domestic.shapes.VolumeInputOptions
 
geometryChanged() - Method in class mgui.interfaces.shapes.Shape3DInt
Called when this shape's geometry has changed
GeometryFunctions - Class in mgui.geometry.util
Utility class providing a library of common geometric functions.
GeometryFunctions() - Constructor for class mgui.geometry.util.GeometryFunctions
 
GeometryFunctions.AnglePoint2D - Class in mgui.geometry.util
 
GeometryFunctions.Point3fComp - Class in mgui.geometry.util
 
get() - Method in class au.edu.unsw.cse.EdgeStack
 
get() - Method in class au.edu.unsw.cse.Mousedelta
 
get() - Method in class au.edu.unsw.cse.Viewer
 
get(int) - Method in class mgui.interfaces.maps.NameMap
 
get(String) - Method in class mgui.interfaces.maps.NameMap
 
get(String) - Method in class mgui.util.OptionList
 
get_locations - Variable in class mgui.io.domestic.graphs.GraphInputOptions
 
get2DShapes() - Method in class mgui.interfaces.shapes.SectionSet3DInt
Returns a list of all 2D shapes in this section set
get2DShapes() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
 
get2DShapes(boolean) - Method in class mgui.interfaces.shapes.SectionSet3DInt
Returns a list of all 2D shapes in this section set
get2DShapes(boolean) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
Returns all shapes in this shape set; if recurse is false, limits this list to the set's members; otherwise, also adds all members of all subsets (along with the sets themselves).
get3DShapes(boolean) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
Returns all 3D shapes in this shape set; if recurse is false, limits this list to the set's members; otherwise, also adds all members of all subsets (along with the sets themselves).
getA() - Method in class mgui.morph.sections.MappedPolygon2D
 
getA_Base() - Method in class mgui.neuro.components.cortical.functions.BiexponentialFunction
 
getA_ee() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getA_ei() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getA_ie() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getA_Max() - Method in class mgui.neuro.components.cortical.functions.BiexponentialFunction
 
getA_ne() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getA_ni() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getAbsoluteIndex(int[]) - Method in class mgui.geometry.Grid3D
Returns the absolute index of the voxel specified by the integer array [s,t,r].
getAbsoluteIndex(int, int, int) - Method in class mgui.geometry.Grid3D
Returns absolute index of this coordinate, which is given by: k * xSize * ySize + j * xSize + i (x changes fastest)
getAbsoluteInstanceDir() - Method in class mgui.interfaces.projects.InterfaceProject
 
getAddFieldStatement(String, DataField) - Static method in class mgui.datasources.util.DataSourceFunctions
Returns an SQL statement for adding field to table.
getAddFieldStatement(String, DataField, DataSourceDriver) - Static method in class mgui.datasources.util.DataSourceFunctions
Returns an SQL statement for adding field to table.
getAlgorithm(String, ArrayList<Point3f>) - Static method in class mgui.geometry.util.ConvexHullFunctions
 
getAllFields(Class<?>) - Static method in class mgui.classes.ClassFunctions
Retrieves all public, protected, and private fields of this class and its superclasses.
getAllNeighbours(int, NeighbourhoodMesh, boolean[], int[], boolean[]) - Static method in class mgui.geometry.mesh.MeshFunctions
Searches for all neighbours of n in nmesh.
getAllSubdirectories() - Method in class mgui.interfaces.projects.InterfaceProject
Returns a list of all directories and their subdirectories contained in this project.
getAllSubdirectories(ArrayList<ProjectDirectory>) - Method in class mgui.interfaces.projects.InterfaceProject
Returns a list of all directories and their subdirectories contained in this list of directories.
getAllUnits() - Static method in class mgui.interfaces.InterfaceEnvironment
 
getAllVertexData() - Method in class mgui.interfaces.shapes.InterfaceShape
Returns all vertex-wide data associated with this shape.
getAllVertexData() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getAllVertexData() - Method in class mgui.interfaces.shapes.Vector3DInt
 
getAllWindows() - Method in class mgui.interfaces.InterfaceDisplayPanel
 
getAllWindows() - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
Returns all graphics panels from all tabs in this display panel.
getAlpha() - Method in class mgui.image.util.WindowedColourModel
 
getAlpha() - Method in class mgui.interfaces.shapes.InterfaceShape
Gets the current transparency level for this shape.
getAlpha() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getAlpha() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getAlpha() - Method in class mgui.util.Colour
 
getAlpha() - Method in class mgui.util.Colour1f
 
getAlpha() - Method in class mgui.util.Colour2f
 
getAlpha() - Method in class mgui.util.Colour3f
 
getAlpha() - Method in class mgui.util.Colour4f
 
getAlpha(int) - Method in class mgui.image.util.WindowedColourModel
 
getAlpha(int) - Method in class mgui.interfaces.shapes.VolumeSet3DInt
Gets the transparency for the i'th volume
getAlpha(Object) - Method in class mgui.image.util.WindowedColourModel
 
getAlphaIndex() - Method in class mgui.image.util.WindowedColourModel
 
getAlphaMax() - Method in class mgui.image.util.WindowedColourModel
 
getAlphaMin() - Method in class mgui.image.util.WindowedColourModel
 
getAlphaMode() - Method in class mgui.interfaces.shapes.Mesh3DInt
 
getAmplitude() - Method in class mgui.models.updaters.PulseTrainUpdater.CurrentPulse
 
getAmplitude() - Method in class mgui.neuro.updaters.PulseTrainUpdater.CurrentPulse
 
getAnchor(double, float) - Method in class mgui.interfaces.maps.ContinuousColourMap
 
getAngle(Point2d, Point2d) - Static method in class mgui.geometry.util.GeometryFunctions
 
getAngle(Point2f, Point2f) - Static method in class mgui.geometry.util.GeometryFunctions
 
getAngle(Point2f, Point2f, Point2f) - Static method in class mgui.geometry.util.GeometryFunctions
Determines the angle between vectors AB and BC.
getAngle(Point3f, Point3f, Point3f, Point3f) - Static method in class mgui.geometry.util.GeometryFunctions
Returns the angle between two triangular faces, defined such that AB is a common edge.
getAngleDiff(double, double) - Static method in class mgui.geometry.util.GeometryFunctions
 
getAngleDiff(Radius2D) - Method in class mgui.geometry.Radius2D
 
getAngleDiffCW(double, double) - Static method in class mgui.geometry.util.GeometryFunctions
 
getAngles() - Method in class mgui.geometry.Triangle3D
Returns face angles as an array ordered by: ∠A, ∠B, ∠C
getAngleTangent(double, double) - Static method in class mgui.geometry.util.GeometryFunctions
Returns an angle tangent to the given node angles in a polygon
getAnnotRGB(int) - Method in class mgui.io.foreign.freesurfer.FreesurferVertexDataLoader
 
getAntialiasing() - Method in class mgui.interfaces.shapes.Polygon3DInt
Gets the current anti-aliasing policy.
getAppear() - Method in class au.edu.unsw.cse.VRMLState
 
getAppletContext() - Method in class au.edu.unsw.cse.FakeAppletStub
 
getAppletInfo() - Method in class au.edu.unsw.cse.Applet3d
 
getAppletInfo() - Method in class au.edu.unsw.cse.AppletDepth
 
getAppletInfo() - Method in class au.edu.unsw.cse.AppletHull
 
getAppletInfo() - Method in class au.edu.unsw.cse.AppletPatch
 
getApplicationDataDir() - Static method in class mgui.interfaces.InterfaceEnvironment
Returns the application data directory; if this is not set, returns the current dir
getApplyClip() - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getApplyMasks() - Method in class mgui.interfaces.shapes.Volume3DInt
Whether currently set masks are to be applied or not.
getApplySigmoid() - Method in class mgui.neuro.components.cortical.functions.BiexponentialFunction
 
getArea(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns the surface area of the given mesh
getArea(Polygon2D) - Static method in class mgui.geometry.util.GeometryFunctions
Determines the area of thisPoly.
getArea(Triangle3D) - Static method in class mgui.geometry.util.GeometryFunctions
Determines the area of triangle tri.
getArea(Point3f, Point3f, Point3f) - Static method in class mgui.geometry.util.GeometryFunctions
Determines the area of triangle defined by three points.
getArgString(String[]) - Static method in class mgui.neuro.imaging.camino.CaminoFunctions
 
getArgString(String[]) - Static method in class mgui.pipelines.PipelineFunctions
 
getArguments(String, InterfaceProject, PipelineState) - Method in class mgui.pipelines.PipelineProcessInstance
Returns the parameters of this process instance as an array of String values, for the specific instance and project.
getArguments(String, PipelineState) - Method in class mgui.pipelines.PipelineProcessInstance
Returns the parameters of this process instance as an array of String values, for the specific instance and root directory.
getArguments(PipelineState) - Method in class mgui.pipelines.PipelineProcessInstance
Returns the parameters of this process instance as an array of String values.
getArrowScale() - Method in class mgui.interfaces.shapes.VectorSet3DInt
 
getArrowSize() - Method in class mgui.interfaces.graphics.util.Axes3D
 
getArrowVisibilityPredicate(boolean) - Static method in class mgui.interfaces.graphs.util.GraphFunctions
Returns a predicate object to control the visibility of edge arrows in a graph.
getAsContinuousMap(int) - Method in class mgui.interfaces.maps.DiscreteColourMap
Converts this discrete map to a continuous map by sampling at 0, N and no_anchors - 2 evenly-spaced indices.
getAsList() - Method in class mgui.interfaces.attributes.AttributeList
 
getAsList() - Method in class mgui.interfaces.variables.MatrixInt
 
getAsList() - Method in class mgui.interfaces.variables.StringVectorInt
 
getAsList() - Method in class mgui.interfaces.variables.VariableInt
Returns this variable as a single list of values.
getAsList() - Method in class mgui.interfaces.variables.VectorInt
 
getAsVector4d() - Method in class mgui.geometry.Plane3D
Return plane as a Vector4d defining the plane equation:
getAttribute() - Method in class mgui.interfaces.attributes.AttributeEvent
 
getAttribute() - Method in class mgui.interfaces.attributes.tree.AttributeButton
 
getAttribute(int) - Method in class mgui.interfaces.attributes.AttributeList
Returns the attribute at the specified index.
getAttribute(int) - Method in class mgui.interfaces.attributes.table.AttributeTableModel
 
getAttribute(int) - Method in class mgui.interfaces.attributes.table.InterfaceAttributeTable
 
getAttribute(SGTData) - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
Returns the attributes for the given data object.
getAttribute(String) - Method in class mgui.datasources.DataConnection
 
getAttribute(String) - Method in class mgui.datasources.DataSourceDriver
 
getAttribute(String) - Method in class mgui.geometry.mesh.MeshEngine
 
getAttribute(String) - Method in class mgui.geometry.neuro.mesh.NeuroMeshEngine
 
getAttribute(String) - Method in class mgui.geometry.volume.VolumeEngine
 
getAttribute(String) - Method in class mgui.interfaces.attributes.AttributeList
Gets the Attribute object for the specified name; returns null if this attribute does not exist.
getAttribute(String) - Method in interface mgui.interfaces.attributes.AttributeObject
Returns a specific attribute for this object.
getAttribute(String) - Method in class mgui.interfaces.attributes.InterfaceAttributePanel
 
getAttribute(String) - Method in class mgui.interfaces.graphics.Graphic2DGrid
 
getAttribute(String) - Method in class mgui.interfaces.graphics.util.DrawingEngine
 
getAttribute(String) - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
 
getAttribute(String) - Method in class mgui.interfaces.InterfacePanel
 
getAttribute(String) - Method in class mgui.interfaces.layouts.InterfaceLayoutPanel
 
getAttribute(String) - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
 
getAttribute(String) - Method in class mgui.interfaces.maps.Camera3D
 
getAttribute(String) - Method in class mgui.interfaces.plots.InterfacePlot
 
getAttribute(String) - Method in class mgui.interfaces.plots.InterfacePlotObject
 
getAttribute(String) - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
Returns the attributes for the data object with the given name.
getAttribute(String) - Method in class mgui.interfaces.projects.InterfaceProject
 
getAttribute(String) - Method in class mgui.interfaces.shapes.InterfaceShape
 
getAttribute(String) - Method in class mgui.interfaces.shapes.paths.PathDataRenderer
 
getAttribute(String) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
 
getAttribute(String) - Method in class mgui.interfaces.shapes.util.ShapeEngine
 
getAttribute(String) - Method in class mgui.interfaces.tables.InterfaceTableModel
 
getAttribute(String) - Method in class mgui.interfaces.variables.VariableInt
 
getAttribute(String) - Method in class mgui.models.dynamic.functions.Function
 
getAttribute(String) - Method in class mgui.models.networks.AbstractNetworkModel
 
getAttribute(String) - Method in class mgui.models.updaters.PulseTrainUpdater.CurrentPulse
 
getAttribute(String) - Method in class mgui.models.updaters.SimpleEnvironmentUpdater
 
getAttribute(String) - Method in class mgui.neuro.components.AbstractNeuroComponent
 
getAttribute(String) - Method in class mgui.neuro.graphs.NeuralNetGraph
 
getAttribute(String) - Method in class mgui.neuro.updaters.PulseTrainUpdater.CurrentPulse
 
getAttributeList() - Method in class mgui.datasources.DataField
 
getAttributeList() - Method in class mgui.datasources.DataTable
 
getAttributeList() - Method in class mgui.io.domestic.attributes.AttributeXMLHandler
 
getAttributeObjects() - Method in class mgui.interfaces.InterfaceWorkspace
Returns a list of all the attribute objects contained in this workspace.
getAttributePanel() - Method in class mgui.interfaces.attributes.table.InterfaceAttributeTable
 
getAttributes() - Method in class mgui.datasources.DataConnection
 
getAttributes() - Method in class mgui.datasources.DataSourceDriver
 
getAttributes() - Method in class mgui.geometry.mesh.MeshEngine
 
getAttributes() - Method in class mgui.geometry.neuro.mesh.NeuroMeshEngine
 
getAttributes() - Method in class mgui.geometry.volume.VolumeEngine
 
getAttributes() - Method in interface mgui.interfaces.attributes.AttributeObject
Returns the list of current attributes for this object.
getAttributes() - Method in class mgui.interfaces.attributes.InterfaceAttributePanel
 
getAttributes() - Method in class mgui.interfaces.graphics.Graphic2DGrid
 
getAttributes() - Method in class mgui.interfaces.graphics.util.DrawingEngine
 
getAttributes() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
 
getAttributes() - Method in class mgui.interfaces.InterfacePanel
 
getAttributes() - Method in class mgui.interfaces.layouts.InterfaceLayoutPanel
 
getAttributes() - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
 
getAttributes() - Method in class mgui.interfaces.maps.Camera3D
 
getAttributes() - Method in class mgui.interfaces.plots.InterfacePlot
 
getAttributes() - Method in class mgui.interfaces.plots.InterfacePlotObject
 
getAttributes() - Method in class mgui.interfaces.projects.InterfaceProject
 
getAttributes() - Method in class mgui.interfaces.shapes.InterfaceShape
 
getAttributes() - Method in class mgui.interfaces.shapes.paths.PathDataRenderer
 
getAttributes() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
 
getAttributes() - Method in class mgui.interfaces.shapes.util.ShapeEngine
 
getAttributes() - Method in class mgui.interfaces.shapes.VertexDataColumn
 
getAttributes() - Method in class mgui.interfaces.tables.InterfaceTableModel
 
getAttributes() - Method in class mgui.interfaces.variables.VariableInt
 
getAttributes() - Method in class mgui.models.dynamic.functions.Function
 
getAttributes() - Method in class mgui.models.networks.AbstractNetworkModel
 
getAttributes() - Method in class mgui.models.updaters.PulseTrainUpdater.CurrentPulse
 
getAttributes() - Method in class mgui.models.updaters.SimpleEnvironmentUpdater
 
getAttributes() - Method in class mgui.neuro.components.AbstractNeuroComponent
 
getAttributes() - Method in class mgui.neuro.graphs.NeuralNetGraph
 
getAttributes() - Method in class mgui.neuro.updaters.PulseTrainUpdater.CurrentPulse
 
getAttributes(String) - Method in class mgui.geometry.mesh.MeshEngine
 
getAttributes(String) - Method in class mgui.geometry.neuro.mesh.NeuroMeshEngine
 
getAttributes(String) - Method in class mgui.geometry.volume.VolumeEngine
Returns the attributes corresponding to key, where key is of the form "operation (method)".
getAttributes(String) - Method in class mgui.interfaces.shapes.util.ShapeEngine
 
getAttributes(String, String) - Method in class mgui.geometry.mesh.MeshEngine
 
getAttributes(String, String) - Method in class mgui.geometry.neuro.mesh.NeuroMeshEngine
 
getAttributes(String, String) - Method in class mgui.geometry.volume.VolumeEngine
 
getAttributes(String, String) - Method in class mgui.interfaces.graphics.util.DrawingEngine
 
getAttributes(String, String) - Method in class mgui.interfaces.shapes.util.ShapeEngine
 
getAttributes(String, String) - Method in interface mgui.interfaces.util.Engine
Returns the attributes list corresponding to the operation and method.
getAttributeValue(String) - Method in class mgui.datasources.DataConnection
 
getAttributeValue(String) - Method in class mgui.datasources.DataSourceDriver
 
getAttributeValue(String) - Method in class mgui.geometry.mesh.MeshEngine
 
getAttributeValue(String) - Method in class mgui.geometry.neuro.mesh.NeuroMeshEngine
 
getAttributeValue(String) - Method in class mgui.geometry.volume.VolumeEngine
 
getAttributeValue(String) - Method in interface mgui.interfaces.attributes.AttributeObject
Gets the value of attribute name, or null if it does not exist.
getAttributeValue(String) - Method in class mgui.interfaces.graphics.Graphic2DGrid
 
getAttributeValue(String) - Method in class mgui.interfaces.graphics.util.DrawingEngine
 
getAttributeValue(String) - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
 
getAttributeValue(String) - Method in class mgui.interfaces.InterfacePanel
 
getAttributeValue(String) - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
 
getAttributeValue(String) - Method in class mgui.interfaces.maps.Camera3D
 
getAttributeValue(String) - Method in class mgui.interfaces.plots.InterfacePlotObject
 
getAttributeValue(String) - Method in class mgui.interfaces.projects.InterfaceProject
 
getAttributeValue(String) - Method in class mgui.interfaces.shapes.InterfaceShape
 
getAttributeValue(String) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
 
getAttributeValue(String) - Method in class mgui.interfaces.shapes.util.ShapeEngine
 
getAttributeValue(String) - Method in class mgui.interfaces.tables.InterfaceTableModel
 
getAttributeValue(String) - Method in class mgui.interfaces.variables.VariableInt
 
getAttributeValue(String) - Method in class mgui.models.dynamic.functions.Function
 
getAttributeValue(String) - Method in class mgui.models.networks.AbstractNetworkModel
 
getAttributeValue(String) - Method in class mgui.models.networks.components.AbstractNetworkComponent
 
getAttributeValue(String) - Method in class mgui.models.updaters.PulseTrainUpdater.CurrentPulse
 
getAttributeValue(String) - Method in class mgui.models.updaters.SimpleEnvironmentUpdater
 
getAttributeValue(String) - Method in class mgui.neuro.updaters.PulseTrainUpdater.CurrentPulse
 
getAutoCenter() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getAutoInterval() - Method in class mgui.interfaces.plots.sgt.SgtAxis
Returns the number of intervals to use when constructing an automatic range.
getAverageEdgeLength(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns the average edge length keyin a mesh.
getAveragePlane(ArrayList<Point3f>) - Static method in class mgui.geometry.util.GeometryFunctions
Return a plane representing the average plane of a set of nodes note, in the degenerative case the average cross product will be zero; thus no plane will be defined.
getAverageRayPoints(ArrayList<ArrayList<Double>>) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
 
getAverageSkullAndScalpMeshes(Mesh3D, int[][], ArrayList<Double>, Point3f) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
Returns average meshes for the control points in A.
getAwtColor(Color3f) - Static method in class mgui.util.Colours
 
getAwtColor(Color4f) - Static method in class mgui.util.Colours
 
getAxes() - Method in interface mgui.interfaces.shapes.volume.VolumeMetadata
Returns the S, T, and R axes of this volume, respectively.
getAxes() - Method in class mgui.io.foreign.fsl.FSLVolumeMetadata
 
getAxes() - Method in class mgui.io.foreign.wunil.WunilDataset
 
getAxes() - Method in class mgui.io.standard.nifti.NiftiMetadata
 
getAxesSize() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getAxesSize() - Method in class mgui.interfaces.graphics.util.Axes3D
 
getAxis() - Method in class mgui.interfaces.plots.sgt.SgtAxis
Returns the SGT axis.
getAxis(int) - Method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
 
getAxis(String) - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
Returns the axis with the specified name; null if no such axis exists.
getAxis(String) - Static method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
 
getAxisA() - Method in class mgui.geometry.Ellipse2D
 
getAxisB() - Method in class mgui.geometry.Ellipse2D
 
getAxisColourX() - Method in class mgui.interfaces.graphics.util.Axes3D
 
getAxisColourY() - Method in class mgui.interfaces.graphics.util.Axes3D
 
getAxisColourZ() - Method in class mgui.interfaces.graphics.util.Axes3D
 
getAxisDistance(K3DBinaryTree.Vertex, Point3f, int) - Method in class mgui.geometry.util.K3DBinaryTree
 
getAxisLabelX() - Method in class mgui.interfaces.graphics.util.Axes3D
 
getAxisLabelY() - Method in class mgui.interfaces.graphics.util.Axes3D
 
getAxisLabelZ() - Method in class mgui.interfaces.graphics.util.Axes3D
 
getAxisString(int) - Static method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
 
getAxisVector(int) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
 
getAxisX() - Method in class mgui.geometry.Plane3D
 
getAxisX() - Method in class mgui.interfaces.graphics.util.Axes3D
 
getAxisX(Vector3d, double) - Method in class mgui.interfaces.maps.Camera3D
 
getAxisXMax() - Method in class mgui.interfaces.plots.osp.InterfaceStripChart
 
getAxisXMin() - Method in class mgui.interfaces.plots.osp.InterfaceStripChart
 
getAxisXType() - Method in class mgui.interfaces.plots.mgui.PlotMap2D
Returns the X axis type for this map
getAxisY() - Method in class mgui.geometry.Plane3D
 
getAxisY() - Method in class mgui.interfaces.graphics.util.Axes3D
 
getAxisY(Vector3d, double) - Method in class mgui.interfaces.maps.Camera3D
 
getAxisYMax() - Method in class mgui.interfaces.plots.osp.InterfaceStripChart
 
getAxisYMin() - Method in class mgui.interfaces.plots.osp.InterfaceStripChart
 
getAxisYType() - Method in class mgui.interfaces.plots.mgui.PlotMap2D
Returns the Y axis type for this map
getAxisZ() - Method in class mgui.interfaces.graphics.util.Axes3D
 
getAxon() - Method in class mgui.neuro.components.AbstractNeuron
 
getAxon() - Method in class mgui.neuro.components.compartments.CompartmentalNeuron
 
getAxon() - Method in interface mgui.neuro.components.Neuron
 
getB() - Method in class mgui.morph.sections.MappedPolygon2D
 
getBackFlip() - Method in class mgui.interfaces.shapes.Mesh3DInt
 
getBackgroundColour() - Method in class mgui.interfaces.graphics.InterfaceGraphic
 
getBackgroundColour() - Method in class mgui.interfaces.shapes.SectionSet2DInt
 
getBackgroundNonSelectionColor() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
Returns the background color to be used for non selected nodes.
getBackgroundSelectionColor() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
Returns the color to use for the background if node is selected.
getBaseGrid() - Method in class mgui.interfaces.shapes.dynamic.Volume4DInt
 
getBaseLayer() - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
Returns the base layer; i.e., containing axes + labels.
getBasePt() - Method in class mgui.geometry.Box3D
Returns a copy of this box's base point.
getBasicInstance(int, double) - Method in class mgui.neuro.components.simple.SimpleNeuron
Returns an instance of a basic simple neuron with dendCount basic (non branching) dendrites, each with a resting potential of restingV.
getBasicInstance(int, double) - Method in class mgui.neuro.components.simple.SimpleSensoryNeuron
 
getBasicNormalStats(ArrayList<MguiNumber>) - Static method in class mgui.stats.StatFunctions
Return statistics describing a set of normally distributed values ordered as follows: mean sum standard deviation sum of squares minimum maximum
getBasicNormalStatsDouble(ArrayList<Double>) - Static method in class mgui.stats.StatFunctions
Return statistics describing a set of normally distributed values ordered as follows: mean sum standard deviation sum of squares
getBasicSensoryNeuron() - Static method in class mgui.neuro.components.simple.SimpleSensoryNeuron
 
getBasicSimpleCorticalRegion() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
 
getBasicUnit() - Static method in class mgui.neuro.components.AbstractNeuron
 
getBasicUnit() - Static method in class mgui.neuro.components.simple.SimpleMotorNeuron
 
getBasicUnit() - Static method in class mgui.neuro.components.simple.SimpleNeuron
 
getBasicUnit() - Static method in class mgui.neuro.components.simple.SimpleSensoryNeuron
 
getBasisTransform() - Method in class mgui.geometry.Box3D
Returns a matrix which will transform a vector expressed in world (model) coordinates to one expressed with respect to this box's coordinate space.
getBifurcatedPaths() - Method in class mgui.morph.sections.MappedPolygon2DPath
Adds a map to this path and creates new paths for each additional map in the buffer.
getBinaryStream(int) - Method in class mgui.datasources.DataRecordSet
Fetches the serialized binary data stream from a specified field in the data set.
getBinaryStream(String) - Method in class mgui.datasources.DataRecordSet
 
getBinAtPoint(Point) - Method in class mgui.interfaces.stats.HistogramPlot
 
getBitpix() - Method in class mgui.io.standard.nifti.Nifti1Dataset
Get the bitpix field
getBlobsFromVolume(Volume3DInt) - Method in class mgui.geometry.volume.VolumeEngine
Extract blobs from a thresholded volume
getBlobsFromVolume(Volume3DInt, String, String, ProgressUpdater, int, double) - Static method in class mgui.geometry.volume.VolumeFunctions
Finds connected blobs in a thresholded volume.
getBlobsFromVolumeBlocking(Volume3DInt, String, ProgressUpdater, int, double) - Static method in class mgui.geometry.volume.VolumeFunctions
Finds connected blobs in a thresholded volume.
getBlue() - Method in class mgui.util.Colour
 
getBlue() - Method in class mgui.util.Colour1f
 
getBlue() - Method in class mgui.util.Colour2f
 
getBlue() - Method in class mgui.util.Colour3f
 
getBlue() - Method in class mgui.util.Colour4f
 
getBlue(int) - Method in class mgui.image.util.WindowedColourModel
 
getBlue(Object) - Method in class mgui.image.util.WindowedColourModel
 
getBlueIndex() - Method in class mgui.image.util.WindowedColourModel
 
getBoolCornerPoints(Polygon2DInt, double, double) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
 
getBoolParameter(String) - Method in class au.edu.unsw.cse.Applet3d
 
getBootstrapSample(Matrix, int) - Static method in class mgui.stats.StatFunctions
Generates a bootstrap sample of matrix by randomly sampling from it N times, with the possibility of sampling the same observation multiple times.
getBorderColour() - Method in class mgui.interfaces.graphics.util.Axes3D
 
getBorderSelectionColor() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
Returns the color the border is drawn.
getBottomPointingRays(ArrayList<SampleRay>, float) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
Returns a list of indices corresponding to rays which project to a point with a z coordinate below bottom_z.
getBoundaryNodeIndices(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
 
getBoundaryNodes(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
Determine which nodes are boundary nodes, return an array of booleans.
getBoundBox() - Method in class mgui.geometry.Shape3D
 
getBoundBox() - Method in class mgui.geometry.Sphere3D
 
getBoundBox() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getBoundBox2D() - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getBoundBoxNode() - Method in class mgui.interfaces.shapes.Shape3DInt
Return's this shape's bounding box node.
getBoundingBox() - Method in class mgui.io.standard.nifti.NiftiVolumeLoader
 
getBoundingBox(ArrayList<Point3f>) - Static method in class mgui.geometry.util.GeometryFunctions
Returns the box (having standard axes) that bounds this set of points.
getBounds() - Method in class mgui.geometry.Shape2D
Returns a rectangle which bounds this 2D shape
getBounds() - Method in class mgui.geometry.Text2D
 
getBounds() - Method in class mgui.interfaces.maps.Map2D
 
getBounds() - Method in class mgui.interfaces.shapes.Line2DInt
 
getBounds() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getBounds() - Method in class mgui.interfaces.shapes.Text2DInt
 
getBounds() - Method in interface mgui.interfaces.shapes.volume.VolumeMetadata
The geometric bounds of this volume; note that the bounding box will be scaled up by one voxel length in each axis direction, and its origin will be shifted a half voxel, such that voxel center points are positioned correctly.
getBounds() - Method in class mgui.io.foreign.fsl.FSLVolumeMetadata
 
getBounds() - Method in class mgui.io.foreign.wunil.WunilDataset
 
getBounds() - Method in class mgui.io.standard.nifti.NiftiMetadata
 
getBoundShape() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getBoundSphere() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getBoundsScale() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getBox() - Method in class mgui.interfaces.shapes.Box3DInt
 
getBox() - Method in class mgui.interfaces.shapes.Volume3DInt
 
getBox3D(Point3f, Point3f) - Static method in class mgui.geometry.util.GeometryFunctions
Returns a Box3D defined by two points
getBufferImage(InterfaceGraphic3D) - Method in class mgui.io.domestic.videos.ImageStackVideoWriter
 
getBufferSize() - Method in interface mgui.interfaces.io.DataBuffer
Returns the size of this buffer
getButtonType() - Method in class mgui.interfaces.InterfaceDialogBox
 
getByReferenceUrl() - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
getByReferenceUrls() - Method in class mgui.interfaces.shapes.InterfaceShape
Returns a URL string for the latest call to InterfaceShape.writeXML(int,java.io.Writer).
getByReferenceUrls() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
getByRefImages() - Method in class mgui.interfaces.shapes.volume.Volume3DTexture
 
getBytes(double, DataType, ByteOrder) - Static method in class mgui.io.util.IoFunctions
 
getByteSize() - Method in class mgui.numbers.MguiBoolean
 
getByteSize() - Method in class mgui.numbers.MguiDouble
 
getByteSize() - Method in class mgui.numbers.MguiFloat
 
getByteSize() - Method in class mgui.numbers.MguiInteger
 
getByteSize() - Method in class mgui.numbers.MguiLong
 
getByteSize() - Method in interface mgui.numbers.MguiNumber
 
getByteSize() - Method in class mgui.numbers.MguiShort
 
getByteValue(double) - Static method in class mgui.geometry.volume.VolumeFunctions
 
getCached(int, int) - Method in class mgui.interfaces.datasources.DataTableModel
 
getCamera() - Method in class mgui.interfaces.events.CameraEvent
 
getCamera() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getCamera() - Method in class mgui.interfaces.maps.Map3D
 
getCameraClone() - Method in class mgui.interfaces.graphics.View3D
 
getCameraListener() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getCameraListener() - Method in class mgui.interfaces.shapes.Volume3DInt
 
getCameraRotation(double, Point3d) - Method in class mgui.interfaces.maps.Camera3D
Returns a transform corresponding to this camera's rotation, but not translation.
getCameraTransform() - Method in class mgui.interfaces.maps.Camera3D
Returns a transform to apply to ViewPlatform, corresponding to this camera.
getCanvas() - Method in class mgui.interfaces.graphics.CanvasEvent
 
getCanvas() - Method in class mgui.interfaces.graphics.InterfaceCanvas3D
 
getCategory() - Method in class mgui.interfaces.layouts.CategoryTitle
 
getCategoryComponent(String) - Method in class mgui.interfaces.layouts.CategoryLayout
 
getCellEditor() - Method in class mgui.interfaces.attributes.table.InterfaceAttributeTable
 
getCellEditor(int, int) - Method in class mgui.interfaces.attributes.table.InterfaceAttributeTable
 
getCellEditorValue() - Method in class mgui.interfaces.attributes.table.AttributeCellEditor
 
getCellEditorValue() - Method in class mgui.interfaces.attributes.tree.AttributeTreeCellEditor
 
getCellEditorValue() - Method in class mgui.interfaces.graphics.InterfaceGraphicPanel.GraphicWindowListEditor
 
getCellEditorValue() - Method in class mgui.interfaces.maps.DiscreteColourMapTable.Editor
 
getCellEditorValue() - Method in class mgui.interfaces.queries.tables.QueryResultTableTreeEditor
 
getCellEditorValue() - Method in class mgui.interfaces.shapes.trees.ShapeTreeCellEditor
 
getCellEditorValue() - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel.SliderTableColumn
 
getCellEditorValue() - Method in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel.AlphaSliderEditor
 
getCellEditorValue() - Method in class mgui.interfaces.trees.AbstractTreeCellEditor
 
getCellEditorValue() - Method in class mgui.interfaces.trees.InterfaceTreeCellEditor
 
getCellRenderer(int, int) - Method in class mgui.interfaces.attributes.table.InterfaceAttributeTable
 
getCellTypes(ArrayList<DataField>) - Method in class mgui.io.domestic.datasources.ExportDataTableExcelWriter
Returns the Excel cell type corresponding to each field
getCenter() - Method in class mgui.geometry.Box3D
 
getCenter() - Method in class mgui.geometry.Ellipse2D
 
getCenter() - Method in class mgui.geometry.Shape3D
 
getCenterOfGravity() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getCenterOfGravity(ArrayList<Point3f>) - Static method in class mgui.geometry.util.GeometryFunctions
Returns the center of gravity of this shape, which is the mean of its coordinates.
getCenterOfGravity(Cube3D) - Static method in class mgui.geometry.util.GeometryFunctions
Returns the center of gravity of this shape, which is the mean of its coordinates.
getCenterOfGravity(Polygon2D) - Static method in class mgui.geometry.Polygon2D
 
getCenterOfGravity(Shape2D) - Static method in class mgui.geometry.util.GeometryFunctions
 
getCenterOfRotation() - Method in class mgui.interfaces.maps.Camera3D
 
getCenterOfVoxel(int, int, int) - Method in class mgui.interfaces.shapes.Volume3DInt
 
getCenterPoint() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getCenterPoint() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
Returns the center point of this shape set.
getCenterPt() - Method in class mgui.geometry.Polygon2D
 
getCenterPt() - Method in class mgui.geometry.Rect2D
 
getCenterPt() - Method in class mgui.geometry.Shape2D
 
getChangePrimaryKeyStatement(String, DataField) - Static method in class mgui.datasources.util.DataSourceFunctions
Returns an SQL statement to update table by adding or dropping a primary key for new_field.
getChangePrimaryKeyStatement(String, DataField, DataSourceDriver) - Static method in class mgui.datasources.util.DataSourceFunctions
Returns an SQL statement to update table by adding or dropping a primary key for new_field.
getChannel(String) - Static method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
 
getChannelCount() - Method in class mgui.interfaces.io.DataBridgeXY
 
getChannelCount() - Method in interface mgui.interfaces.io.DataInputStreamXY
Returns the number of Y channels in this stream.
getChannelCount() - Method in interface mgui.interfaces.io.DataOutputStreamXY
Returns the number of Y channels in this stream.
getChannelCount() - Method in interface mgui.interfaces.io.InterfaceDataSourceTimeSeries
Returns the number of Y channels in this source.
getChannelCount() - Method in interface mgui.interfaces.io.InterfaceDataSourceXY
Returns the number of Y channels in this source.
getChannelCount() - Method in class mgui.interfaces.plots.PlotTimeSeriesDataSource
 
getChannelCount() - Method in class mgui.interfaces.plots.PlotXYDataSource
 
getChannelCount() - Method in class mgui.models.environments.SimpleEnvironmentInputDataSource
 
getChannelCount() - Method in class mgui.models.environments.SimpleEnvironmentObservableDataSource
 
getChannelNames() - Method in interface mgui.interfaces.io.NamedDataSource
 
getChannelNames() - Method in class mgui.interfaces.plots.MatrixPlotDataSource
 
getChannelNames() - Method in class mgui.interfaces.plots.PlotTimeSeriesDataSource
 
getChannelNames() - Method in class mgui.interfaces.plots.PlotXYDataSource
 
getChannelNames() - Method in class mgui.interfaces.plots.VariablePlotTimeSeriesDataSource
 
getChannelNames() - Method in class mgui.interfaces.plots.VariablePlotXYDataSource
 
getChannelNames() - Method in class mgui.models.environments.AbstractEnvironmentDataSource
 
getChannelSize() - Method in class mgui.io.standard.nifti.NiftiMetadata
 
getChannelSize(String) - Method in class mgui.interfaces.plots.PlotXYDataSource
 
getCharLimit() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
 
getChild3D() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getChildForShape(InterfaceShape) - Method in class mgui.interfaces.shapes.trees.ShapeModel3DTreeNode
 
getChildForShape(InterfaceShape) - Method in class mgui.interfaces.shapes.trees.ShapeTreeNode
 
getChildNode() - Method in class mgui.interfaces.trees.TreeEvent
 
getChildren() - Method in class mgui.interfaces.trees.InterfaceTreeNode
 
getChildren(TreeNode) - Static method in class mgui.interfaces.trees.util.TreeFunctions
 
getChunk(byte[]) - Static method in class mgui.neuro.imaging.camino.tasks.Shredder2
Reads in the next chunk from the standard input into the array chunk and returns a boolean indicating the success of the operation.
getCircle() - Method in class mgui.interfaces.shapes.Circle2DInt
 
getClassName() - Method in class mgui.datasources.DataSourceDriver
 
getClassName(String) - Static method in class mgui.datasources.DataSourceDrivers
 
getClipboard() - Static method in class mgui.interfaces.InterfaceSession
Returns the clipboard for the current session.
getClipDistances() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getClipDistDown() - Method in class mgui.interfaces.shapes.SectionSet3DInt
Gets the downwards clipping distance for this section set
getClipDistUp() - Method in class mgui.interfaces.shapes.SectionSet3DInt
Gets the upwards clipping distance for this section set
getClipPlanes(int) - Method in class mgui.interfaces.shapes.SectionSet3DInt
Get a set of two ModelClip nodes parallel to this section's plane, at distances defined by getClipDistUp() and getClipDistDown().
getClock() - Method in class mgui.interfaces.graphics.video.Video
Gets the current state of the clock.
getClock() - Method in class mgui.models.dynamic.DynamicModelEngine
 
getClock() - Method in interface mgui.models.dynamic.DynamicModelEnvironment
 
getClock() - Method in class mgui.models.environments.SimpleEnvironment
 
getClosedIcon() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
Returns the icon used to represent non-leaf nodes that are not expanded.
getClosestChild(K3DBinaryTree.K3DNode, Point3f) - Method in class mgui.geometry.util.K3DBinaryTree
 
getClosestSection(Point3f) - Method in class mgui.interfaces.shapes.SectionSet3DInt
Returns the index of the section in this set which is closest to point.
getClosestVertex(Mesh3D, int, ArrayList<Integer>, MguiDouble) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns the closest vertex in a list of vertices, or from all vertices if the list is empty.
getClosestVertex(Shape2D, Point2f) - Static method in class mgui.geometry.util.GeometryFunctions
Returns the vertex of shape which is closest to point.
getClosestVertex(Shape3D, Point3f) - Static method in class mgui.geometry.util.GeometryFunctions
Returns the vertex of shape which is closest to point.
getClosestVertex(Point2f) - Method in class mgui.interfaces.shapes.Shape2DInt
Returns the index of the vertex in this shape which is closest to point.
getClosestVertex(Point2f) - Method in class mgui.interfaces.shapes.Volume2DInt
 
getClosestVertex(Point3f) - Method in class mgui.interfaces.shapes.Shape3DInt
Returns the index of the vertex of this shape which is closest to point.
getClosestVertex(Point3f) - Method in class mgui.interfaces.shapes.Volume3DInt
 
getClosestVertex3D(Point2f, Plane3D) - Method in class mgui.interfaces.shapes.Shape2DInt
If this shape has a parent Shape3DInt object, this method calls the getClosestVertex method of the parent.
getClosestVertices(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns a list of size mesh.n integers, such that list(i) = the index of the closest vertex j from vertex i.
getClosestVertices(Mesh3D, ArrayList<Double>) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns a list of size mesh.n integers, such that list(i) = the index of the closest vertex j from vertex i.
getCm() - Method in class mgui.neuro.components.compartments.CompartmentalDendrite
 
getCode() - Method in interface mgui.models.dynamic.DynamicModelEvent
 
getCode() - Method in class mgui.models.events.SimpleEvent
 
getCode() - Method in class mgui.neuro.components.simple.SimpleEvent
 
getCodeBase() - Method in class au.edu.unsw.cse.FakeAppletStub
 
getColor() - Method in class mgui.util.Colour
 
getColor() - Method in class mgui.util.Colour4f
 
getColor(int) - Method in class au.edu.unsw.cse.View3d
get a colour for objects
getColor3f() - Method in class mgui.util.Colour
 
getColor3f() - Method in class mgui.util.Colour3f
 
getColor3f() - Method in class mgui.util.Colour4f
 
getColor3f(Color) - Static method in class mgui.util.Colours
 
getColor3f(Color4f) - Static method in class mgui.util.Colours
 
getColor3fArray(ArrayList<MguiNumber>) - Method in class mgui.interfaces.maps.ColourMap
Returns an array of Color3f colours mapped from the values in list
getColor3fArray(ArrayList<MguiNumber>, double, double) - Method in class mgui.interfaces.maps.ColourMap
Get an array of colours for the given list of values, given the specified limits.
getColor4f() - Method in class mgui.util.Colour
 
getColor4f() - Method in class mgui.util.Colour3f
 
getColor4f() - Method in class mgui.util.Colour4f
 
getColor4f(Color) - Static method in class mgui.util.Colours
 
getColor4fArray(ArrayList<MguiNumber>) - Method in class mgui.interfaces.maps.ColourMap
Returns an array of Color4f colours mapped from the values in list
getColor4fArray(ArrayList<MguiNumber>, double, double) - Method in class mgui.interfaces.maps.ColourMap
Get an array of colours for the given list of values, given the specified limits.
getColor4fArray(ArrayList<MguiNumber>, double, double) - Method in class mgui.interfaces.maps.ContinuousColourMap
 
getColorIndex(int) - Method in class au.edu.unsw.cse.View3d
get a colour index - translating -1 to default colour
getColorIndex(View3d, int) - Method in class au.edu.unsw.cse.Edge3dPlus
 
getColorIndex(View3d, int) - Method in class au.edu.unsw.cse.Object3dAdaptor
 
getColorIndex(View3d, int) - Method in class au.edu.unsw.cse.Triangle3dPlus
 
getColorParameter(String) - Method in class au.edu.unsw.cse.Applet3d
 
getColour() - Method in class mgui.interfaces.graphics.Graphic2DGrid
 
getColour() - Method in class mgui.interfaces.gui.ColourButton
 
getColour() - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
 
getColour() - Method in class mgui.interfaces.plots.osp.InterfaceStripChart.Variable
 
getColour() - Method in class mgui.util.Colour4f
 
getColour(double) - Method in class mgui.interfaces.maps.ColourMap
Get colour for the specified value, for the current limits.
getColour(double, double, double) - Method in class mgui.interfaces.maps.ColourMap
Get colour for the specified value, given the specified limits.
getColour(double, double, double) - Method in class mgui.interfaces.maps.ContinuousColourMap
 
getColour(int) - Method in class mgui.interfaces.maps.ColourMap
 
getColour(int) - Method in class mgui.interfaces.maps.ContinuousColourMap
 
getColour(int) - Method in class mgui.interfaces.maps.DiscreteColourMap
 
getColour(Comparable) - Method in class mgui.interfaces.maps.ContinuousColourMap
 
getColour(Comparable<?>) - Method in class mgui.interfaces.maps.ColourMap
 
getColour(Comparable<?>) - Method in class mgui.interfaces.maps.DiscreteColourMap
 
getColour(Object) - Method in class mgui.util.Colour
 
getColour(String) - Method in class mgui.interfaces.maps.DiscreteColourMap
 
getColourAtValue(double) - Method in class mgui.interfaces.maps.ContinuousColourMap
 
getColourAtValue(double, double, double) - Method in class mgui.interfaces.maps.ContinuousColourMap
 
getColourAtValue(MguiNumber) - Method in class mgui.interfaces.maps.ContinuousColourMap
 
getColourAtValue(MguiNumber, double, double) - Method in class mgui.interfaces.maps.ContinuousColourMap
 
getColourBarImage(int, int) - Method in class mgui.interfaces.maps.ContinuousColourBar
 
getColourForVector(Vector3f) - Method in class mgui.io.domestic.maps.Vector3ColourMap
 
getColourForXML(Attributes) - Static method in class mgui.interfaces.xml.XMLFunctions
 
getColourMap() - Method in class mgui.image.util.WindowedColourModel
 
getColourMap() - Method in class mgui.interfaces.plots.mgui.MatrixImagePlot
Return the current colour map
getColourMap() - Method in class mgui.interfaces.plots.osp.InterfaceStripChart
 
getColourMap() - Method in class mgui.interfaces.shapes.InterfaceShape
Returns the ColourMap associated with the current data column.
getColourMap() - Method in class mgui.interfaces.shapes.PointSet2DInt
 
getColourMap() - Method in class mgui.interfaces.shapes.VertexDataColumn
Returns the colour map associated with this column, or null if there is no associated colour map
getColourMap(String) - Static method in class mgui.interfaces.InterfaceEnvironment
Gets a the colour map with the name name.
getColourMap(String) - Method in class mgui.interfaces.shapes.InterfaceShape
Gets the colour map for column.
getColourMapMax() - Method in class mgui.interfaces.plots.mgui.MatrixImagePlot
Return the current colour map maximum value.
getColourMapMin() - Method in class mgui.interfaces.plots.mgui.MatrixImagePlot
Return the current colour map minimum value.
getColourMaps() - Method in class mgui.interfaces.InterfaceDisplayPanel
 
getColourMaps() - Static method in class mgui.interfaces.InterfaceEnvironment
Gets a list of currently loaded colour maps.
getColourMax() - Method in class mgui.interfaces.shapes.VertexDataColumn
Returns the data maximum for this column
getColourMin() - Method in class mgui.interfaces.shapes.VertexDataColumn
Returns the data maximum for this column
getColourModel() - Static method in class mgui.geometry.volume.VolumeFunctions
 
getColourModel() - Method in class mgui.interfaces.plots.mgui.MatrixImagePlot
 
getColourModel() - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
Returns the current colour model
getColourModel() - Method in class mgui.interfaces.shapes.Volume3DInt
Returns the colour model for the current column, or null if there is no current column.
getColourModel(int) - Static method in class mgui.geometry.volume.VolumeFunctions
 
getColourModel(int, ColourMap) - Static method in class mgui.geometry.volume.VolumeFunctions
 
getColourModel(int, ColourMap, boolean) - Static method in class mgui.geometry.volume.VolumeFunctions
 
getColourModel(int, ColourMap, double, double, double, double, boolean) - Static method in class mgui.geometry.volume.VolumeFunctions
 
getColourModel(String) - Method in class mgui.interfaces.shapes.Volume3DInt
 
getColourNf(Colour, int) - Static method in class mgui.util.Colours
 
getColourSpace() - Method in class mgui.interfaces.shapes.volume.Volume3DTexture
 
getColourType() - Method in class mgui.interfaces.plots.mgui.MatrixImagePlot
Return the current colour type.
getCols() - Method in class mgui.interfaces.plots.InterfacePlotMulti
 
getColumn(int) - Method in class mgui.interfaces.variables.MatrixInt
Returns column col as a VectorInt object.
getColumn(String, int) - Method in class mgui.interfaces.variables.MatrixInt
Returns column col as a VectorInt object.
getColumnClass(int) - Method in class mgui.interfaces.datasources.DataTableModel
 
getColumnClass(int) - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog.YTableModel
 
getColumnClass(int) - Method in class mgui.interfaces.plots.sgt.SgtScatterPlotDialog.XYTableModel
 
getColumnClass(int) - Method in class mgui.interfaces.shapes.InterfaceShapesPanel.VertexSelectionTableModel
 
getColumnClass(int) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel.OverlayVolumeTableModel
 
getColumnClass(int) - Method in class mgui.interfaces.trees.AbstractTreeTableModel
 
getColumnClass(int) - Method in interface mgui.interfaces.trees.TreeTableModel
Returns the type for column number column.
getColumnClass(int) - Method in class mgui.interfaces.trees.TreeTableModelAdapter
 
getColumnClass(int) - Method in class mgui.io.domestic.maps.NameMapOutDialogBox.TableModel
 
getColumnClass(int) - Method in class mgui.io.domestic.shapes.PointSet2DInputDialogBox.TableModel
 
getColumnClass(int) - Method in class mgui.io.domestic.shapes.PointSet3DDataInputDialogBox.TableModel
 
getColumnClass(int) - Method in class mgui.io.domestic.shapes.PointSet3DInputDialogBox.TableModel
 
getColumnClass(int) - Method in class mgui.io.domestic.shapes.PolygonSet3DInputDialogBox.TableModel
 
getColumnClass(int) - Method in class mgui.io.domestic.shapes.ShapeInputDialogBox.TableModel
 
getColumnClass(int) - Method in class mgui.io.domestic.shapes.ShapeModel3DOutputDialog.TableModel
 
getColumnClass(int) - Method in class mgui.io.domestic.shapes.SurfaceDataInputDialogBox.TableModel
 
getColumnClass(int) - Method in class mgui.io.domestic.shapes.SurfaceDataOutputDialogBox.TableModel
 
getColumnClass(int) - Method in class mgui.io.domestic.shapes.SurfaceInputDialogBox.TableModel
 
getColumnClass(int) - Method in class mgui.io.domestic.shapes.VectorSet3DInputDialogBox.TableModel
 
getColumnClass(int) - Method in class mgui.io.domestic.variables.MatrixInDialogBox.TableModel
 
getColumnCount() - Method in class mgui.interfaces.attributes.table.AttributeTableModel
 
getColumnCount() - Method in class mgui.interfaces.datasources.DataTableModel
 
getColumnCount() - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog.YTableModel
 
getColumnCount() - Method in class mgui.interfaces.plots.sgt.SgtScatterPlotDialog.XYTableModel
 
getColumnCount() - Method in class mgui.interfaces.queries.tables.QueryResultTableModel
 
getColumnCount() - Method in class mgui.interfaces.shapes.InterfaceShapesPanel.VertexSelectionTableModel
 
getColumnCount() - Method in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel.OverlayVolumeTableModel
 
getColumnCount() - Method in interface mgui.interfaces.trees.TreeTableModel
Returns the number ofs availible column.
getColumnCount() - Method in class mgui.interfaces.trees.TreeTableModelAdapter
 
getColumnCount() - Method in class mgui.interfaces.variables.tables.VariableTableModel
 
getColumnCount() - Method in class mgui.io.domestic.maps.NameMapOutDialogBox.TableModel
 
getColumnCount() - Method in class mgui.io.domestic.shapes.PointSet2DInputDialogBox.TableModel
 
getColumnCount() - Method in class mgui.io.domestic.shapes.PointSet3DDataInputDialogBox.TableModel
 
getColumnCount() - Method in class mgui.io.domestic.shapes.PointSet3DInputDialogBox.TableModel
 
getColumnCount() - Method in class mgui.io.domestic.shapes.PolygonSet3DInputDialogBox.TableModel
 
getColumnCount() - Method in class mgui.io.domestic.shapes.ShapeInputDialogBox.TableModel
 
getColumnCount() - Method in class mgui.io.domestic.shapes.ShapeModel3DOutputDialog.TableModel
 
getColumnCount() - Method in class mgui.io.domestic.shapes.SurfaceDataInputDialogBox.TableModel
 
getColumnCount() - Method in class mgui.io.domestic.shapes.SurfaceDataOutputDialogBox.TableModel
 
getColumnCount() - Method in class mgui.io.domestic.shapes.SurfaceInputDialogBox.TableModel
 
getColumnCount() - Method in class mgui.io.domestic.shapes.VectorSet3DInputDialogBox.TableModel
 
getColumnCount() - Method in class mgui.io.domestic.variables.MatrixInDialogBox.TableModel
 
getColumnCount() - Method in class mgui.io.foreign.caret.CaretMetricLoader.Header
 
getColumnCount() - Method in class mgui.io.foreign.caret.CaretPaintLoader.Header
 
getColumnMaxes(Matrix) - Static method in class mgui.geometry.util.MatrixFunctions
Returns the maximums of the columns of M.
getColumnMeans(Matrix) - Static method in class mgui.geometry.util.MatrixFunctions
Returns the means of the columns of M.
getColumnMins(Matrix) - Static method in class mgui.geometry.util.MatrixFunctions
Returns the minimums of the columns of M.
getColumnName(int) - Method in class mgui.interfaces.attributes.table.AttributeTableModel
 
getColumnName(int) - Method in class mgui.interfaces.datasources.DataTableModel
 
getColumnName(int) - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog.YTableModel
 
getColumnName(int) - Method in class mgui.interfaces.plots.sgt.SgtScatterPlotDialog.XYTableModel
 
getColumnName(int) - Method in class mgui.interfaces.queries.tables.QueryResultTableModel
 
getColumnName(int) - Method in class mgui.interfaces.shapes.InterfaceShapesPanel.VertexSelectionTableModel
 
getColumnName(int) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel.OverlayVolumeTableModel
 
getColumnName(int) - Method in interface mgui.interfaces.trees.TreeTableModel
Returns the name for column number column.
getColumnName(int) - Method in class mgui.interfaces.trees.TreeTableModelAdapter
 
getColumnName(int) - Method in class mgui.interfaces.variables.tables.VariableTableModel
 
getColumnName(int) - Method in class mgui.io.domestic.maps.NameMapOutDialogBox.TableModel
 
getColumnName(int) - Method in class mgui.io.domestic.shapes.PointSet2DInputDialogBox.TableModel
 
getColumnName(int) - Method in class mgui.io.domestic.shapes.PointSet3DDataInputDialogBox.TableModel
 
getColumnName(int) - Method in class mgui.io.domestic.shapes.PointSet3DInputDialogBox.TableModel
 
getColumnName(int) - Method in class mgui.io.domestic.shapes.PolygonSet3DInputDialogBox.TableModel
 
getColumnName(int) - Method in class mgui.io.domestic.shapes.ShapeInputDialogBox.TableModel
 
getColumnName(int) - Method in class mgui.io.domestic.shapes.ShapeModel3DOutputDialog.TableModel
 
getColumnName(int) - Method in class mgui.io.domestic.shapes.SurfaceDataInputDialogBox.TableModel
 
getColumnName(int) - Method in class mgui.io.domestic.shapes.SurfaceDataOutputDialogBox.TableModel
 
getColumnName(int) - Method in class mgui.io.domestic.shapes.SurfaceInputDialogBox.TableModel
 
getColumnName(int) - Method in class mgui.io.domestic.shapes.VectorSet3DInputDialogBox.TableModel
 
getColumnName(int) - Method in class mgui.io.domestic.variables.MatrixInDialogBox.TableModel
 
getColumns() - Method in class mgui.util.JMultiLineToolTip
 
getColumns(Matrix, int) - Static method in class mgui.geometry.util.MatrixFunctions
Returns col as an ArrayList.
getColumnsFromMetaData(String) - Method in class mgui.datasources.DataSource
Returns a list of columns from this DataSource's metadata, for the specified table.
getColumnSums(Matrix) - Static method in class mgui.geometry.util.MatrixFunctions
Returns the sums of the columns of M.
getComboBox() - Method in class mgui.interfaces.attributes.AttributeSelection
Return a combo box containing this list, and with the specified list width
getComboBox() - Method in class mgui.interfaces.attributes.AttributeSelectionMap
Return a combo box containing this map, as either key values or mapped values (depending on the state of the ComboMode.
getComboBox(int) - Method in class mgui.interfaces.attributes.AttributeSelection
Return a combo box containing this list, and with the specified list width
getComboMode() - Method in class mgui.interfaces.attributes.AttributeSelectionMap
 
getCommand() - Method in class mgui.pipelines.NativeProcess
Returns the native command for this process.
getCommand(String[]) - Method in class mgui.pipelines.NativeProcess
 
getCommandLine(String) - Static method in class mgui.build.Build
Constructs and returns a command line from the specified build file
getCommandLine(String[]) - Method in class mgui.command.CommandInstance
Converts an array of parameters to a single space-delimited line.
getCommandLine(String, String) - Static method in class mgui.build.Build
Constructs and returns a command line from the specified build file
getComparator() - Static method in class mgui.neuro.components.cortical.AbstractCorticalRegion
 
getComparisonCombo() - Static method in class mgui.interfaces.shapes.InterfaceShapesPanel.VertexSelectionTableModel
 
getCompartment() - Method in class mgui.neuro.components.compartments.CompartmentEvent
 
getComplementIOType() - Method in class mgui.io.FileLoader
 
getComplementIOType() - Method in class mgui.io.FileWriter
 
getComplementIOType() - Method in interface mgui.io.InterfaceIO
Returns an InterfaceIOType specifying the InterfaceIO which performs the complementary operation to this one.
getComponent() - Method in class mgui.interfaces.neuro.NeuroComponentEvent
 
getComponent() - Method in class mgui.models.networks.components.NetworkComponentEvent
 
getComponents() - Method in interface mgui.models.dynamic.DynamicModel
 
getComponents() - Method in class mgui.models.networks.AbstractNetwork
 
getComponents() - Method in class mgui.neuro.networks.AbstractNeuralNet
 
getComponents() - Method in class mgui.neuro.networks.CorticalNetwork
 
getCompositeAlpha(String) - Method in class mgui.interfaces.shapes.Volume3DInt
 
getCompositeOrderedColumns() - Method in class mgui.interfaces.shapes.Volume3DInt
 
getCompositeRSliceImage(Volume3DInt, int) - Static method in class mgui.geometry.volume.VolumeFunctions
Returns a composite image from an R-slice plane and a volume
getCompositeRSliceImage(Volume3DInt, int, ArrayList<String>, ArrayList<WindowedColourModel>, ArrayList<Double>) - Static method in class mgui.geometry.volume.VolumeFunctions
Returns a composite image from an R-slice plane, volume, and set of colour models and composite alphas.
getCompositeRSliceImage(Volume3DInt, int, ArrayList<String>, ArrayList<WindowedColourModel>, ArrayList<Double>, ArrayList<Boolean>) - Static method in class mgui.geometry.volume.VolumeFunctions
Returns a composite image from an R-slice plane, volume, and set of colour models and composite alphas.
getCompositeSliceImage(Volume3DInt, int, int) - Static method in class mgui.geometry.volume.VolumeFunctions
Returns a composite image from an S,T, or R-slice plane, determined by section, and volume.
getCompositeSliceImage(Volume3DInt, int, int, ArrayList<String>, ArrayList<WindowedColourModel>, ArrayList<Double>, ArrayList<Boolean>) - Static method in class mgui.geometry.volume.VolumeFunctions
Returns a composite image from an image plane, volume, determined by orientation, and set of colour models and composite alphas.
getCompoundName() - Method in class mgui.pipelines.PipelineProcess
Returns the compound name of this process, of the form [library_name].[compound_name].
getConnectedDataSources() - Method in class mgui.interfaces.InterfaceWorkspace
Returns a list of all connected data sources associated with this workspace.
getConnectedTreeNode() - Method in class mgui.datasources.DataSource
 
getConnection() - Method in class mgui.datasources.DataSource
 
getConnection() - Method in class mgui.datasources.DataSourceDriver
 
getConnectionIcon() - Method in class mgui.datasources.DataSource
 
getConnections() - Method in class mgui.neuro.components.AbstractNeuroComponent
 
getConsoleErrorColour() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
 
getConsoleFont() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
 
getConsoleNormalColour() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
 
getConstraint(int) - Method in class mgui.interfaces.shapes.InterfaceShape
 
getConstraints() - Method in class mgui.interfaces.shapes.InterfaceShape
 
getContent() - Method in class mgui.interfaces.Clipboard
Returns the current content, or null is this clipboard is empty.
getContinuousColourMaps() - Static method in class mgui.interfaces.InterfaceEnvironment
Returns all loaded continuous colour maps.
getControlPointMeshes(int[][], ArrayList<SampleRay>, ScalpAndSkullModelOptions) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
Generates four meshes corresponding to the average control points.
getConversionToMeter() - Method in class mgui.util.ScaledUnit
 
getConvexHull(ArrayList<Point2d>) - Static method in class mgui.geometry.util.GeometryFunctions
Returns the convex hull of points.
getConvexHull(ArrayList<Point3f>, String, ProgressUpdater) - Static method in class mgui.geometry.util.ConvexHullFunctions
Returns a Mesh3D which is the
getConvexHull(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns a new mesh which is the convex hull of the given mesh.
getConvexHull(Mesh3D, String) - Static method in class mgui.geometry.mesh.MeshFunctions
 
getConvexHull(Mesh3D, String, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns a new mesh which is the convex hull of the given mesh.
getConvexHull(Mesh3D, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions
 
getConvexHull(Shape3DInt) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
Returns a new mesh which is the convex hull of the given mesh.
getConvexHull(Shape3DInt, String) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
 
getConvexHull(Shape3DInt, String, ProgressUpdater) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
Returns a new mesh which is the convex hull of the given mesh.
getConvexHull(Shape3DInt, ProgressUpdater) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
 
getConvexHull2f(ArrayList<Point2f>) - Static method in class mgui.geometry.util.GeometryFunctions
Returns the convex hull of points.
getConvexHullBlocking(Shape3DInt, String, ProgressUpdater) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
 
getCoordFile() - Method in class mgui.io.foreign.caret.CaretSurfaceInOptions
 
getCoordFile() - Method in class mgui.io.foreign.caret.CaretSurfaceOutDialogBox
 
getCoords() - Method in class mgui.geometry.Box3D
 
getCoords() - Method in class mgui.geometry.Cube3D
 
getCoords() - Method in class mgui.geometry.Graph3D
 
getCoords() - Method in class mgui.geometry.LineSegment3D
 
getCoords() - Method in class mgui.geometry.Mesh3D
 
getCoords() - Method in class mgui.geometry.Plane3D
 
getCoords() - Method in class mgui.geometry.PointSet3D
 
getCoords() - Method in class mgui.geometry.Polygon2D
 
getCoords() - Method in class mgui.geometry.Polygon3D
Returns an array of n coordinates {x1,y1,z1,x2,...,zn}
getCoords() - Method in class mgui.geometry.Rect3D
 
getCoords() - Method in interface mgui.geometry.Shape
 
getCoords() - Method in class mgui.geometry.Shape2D
Returns the coordinates of this shape as an array of length 2*n.
getCoords() - Method in class mgui.geometry.Shape3D
 
getCoords() - Method in class mgui.geometry.Sphere3D
 
getCoords() - Method in class mgui.geometry.Triangle3D
 
getCoords() - Method in class mgui.geometry.Vector3D
 
getCoordTypes() - Static method in class mgui.interfaces.graphics.util.DrawingEngine
 
getCopy(BufferedImage) - Static method in class mgui.util.ImageFunctions
Returns a clone of image; i.e., a new instance with the same state.
getCorner(int) - Method in class mgui.geometry.Rect2D
Returns the corner specified by corner, which must be one of the constants CNR_BL, CNR_TL, CNR_BR, or CNR_TR.
getCornerPoints(SectionSet3DInt) - Method in class mgui.morph.sections.MorphEngine
 
getCorners() - Method in class mgui.geometry.Rect2D
Returns the four corners of this rectangle, ordered as bottom left, bottom right, top right, and top left.
getCorticalNetwork() - Method in class mgui.io.domestic.network.CorticalNetworkMatrixLoader
 
getCorticalNetwork() - Method in class mgui.io.domestic.network.CorticalNetworkXMLHandler
Returns the last network loaded by a call to parse.
getCount() - Method in class mgui.morph.sections.MappedPolygon2DPath
 
getCreateDatabaseSQL(String) - Method in class mgui.datasources.DataSourceDriver
Generates a driver-specific SQL string for creating a new database.
getCreateDatabaseSQL(String) - Method in class mgui.datasources.postgresql.PostgreSQLDriver
 
getCrossProduct(Point3f, Point3f, Point3f) - Static method in class mgui.geometry.util.GeometryFunctions
 
getCrossProduct(Vector3d, Vector3d) - Static method in class mgui.geometry.util.GeometryFunctions
 
getCrossProduct(Vector3f, Vector3f) - Static method in class mgui.geometry.util.GeometryFunctions
 
getCrossProductDist(Point2f, Point2f, Point2f) - Static method in class mgui.geometry.util.GeometryFunctions
 
getCrossProducts(Polygon2D) - Static method in class mgui.geometry.util.GeometryFunctions
Returns a list of cross-products corresponding the the vertices of thisPoly.
getCubicSplinePt(Point2f, Point2f, Point2f, Point2f, double) - Static method in class mgui.geometry.util.GeometryFunctions
Given two nodes N1 and N2 and their control points C1, C2, return a point along the cubic spline function defined by these points, at distance t (where t = 0 at N1 and t = 1 at N2) along the curve.
getCurrent() - Method in class mgui.util.OptionList
 
getCurrentAttributeDialog() - Method in class mgui.interfaces.InterfaceWorkspace
 
getCurrentColumn() - Method in class mgui.interfaces.shapes.InterfaceShape
Returns the name of the current data column
getCurrentColumn() - Method in class mgui.interfaces.shapes.PointSet2DInt
 
getCurrentColumn() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getCurrentDataColumn() - Method in class mgui.interfaces.shapes.InterfaceShape
Returns the current VertexDataColumn.
getCurrentDataFromSet() - Method in class mgui.interfaces.shapes.Vector3DInt
 
getCurrentDir() - Static method in class mgui.interfaces.InterfaceEnvironment
Returns the current directory
getCurrentDir() - Static method in class mgui.io.util.IoFunctions
 
getCurrentFile() - Method in class mgui.interfaces.gui.FileButton
 
getCurrentInstance() - Method in class mgui.pipelines.InterfacePipeline
 
getCurrentIOType() - Method in class mgui.io.domestic.shapes.VolumeInputDialogBox
 
getCurrentLineCount() - Method in class mgui.io.domestic.shapes.ShapeDataLoader
 
getCurrentOptions() - Method in class mgui.io.domestic.datasources.ExportDataTableDialogBox
Returns the current options.
getCurrentPanel() - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
 
getCurrentPlane() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
 
getCurrentPlane() - Method in class mgui.interfaces.shapes.util.Plane3DDialog
 
getCurrentPlot() - Method in class mgui.interfaces.plots.InterfacePlotDisplay
 
getCurrentRecord() - Method in class mgui.datasources.DataRecordSet
 
getCurrentSection() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
Gets the current section for the section set being rendered.
getCurrentSection() - Method in class mgui.morph.sections.MorphSections3DInt
 
getCurrentSectionSet() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
Sets the current section set for this graphic object.
getCurrentSectionSet() - Method in class mgui.interfaces.InterfaceDisplayPanel
 
getCurrentSelection() - Method in class mgui.interfaces.InterfaceDisplayPanel
 
getCurrentSet() - Method in interface mgui.models.dynamic.stats.DynamicModelStatistics
 
getCurrentSet() - Method in class mgui.neuro.stats.SimpleStatistics
 
getCurrentShapeAttributeDialog() - Method in class mgui.interfaces.InterfaceWorkspace
 
getCurrentShapeModel() - Method in class mgui.interfaces.InterfaceDisplayPanel
 
getCurrentShapeModel() - Method in class mgui.interfaces.InterfaceWorkspace
Returns the current shape model for this Workspace, or null if there is no current model.
getCurrentShapes() - Method in class mgui.interfaces.shapes.InterfaceShapesPanel
Determines which shapes are selected and returns them.
getCurrentShapes() - Method in class mgui.interfaces.shapes.ShapeStatsPanel
Determines which shapes are selected and returns them.
getCurrentShapeSet() - Method in class mgui.interfaces.InterfaceDisplayPanel
 
getCurrentSubsection() - Method in class mgui.morph.sections.MorphSections3DInt
 
getCurrentTool() - Method in class mgui.interfaces.graphics.InterfaceGraphic
 
getCurrentTool() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
 
getCurrentTool() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getCurrentTool() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
 
getCurrentTool() - Method in class mgui.interfaces.InterfaceDisplayPanel
 
getCurrentTool() - Method in class mgui.interfaces.plots.InterfacePlotDisplay
 
getCurrentTool() - Method in class mgui.interfaces.tools.shapes.util.RulerDialog
Returns the tool that is currently using this dialog
getCurrentTool() - Method in interface mgui.interfaces.tools.Toolable
 
getCurrentTool2D() - Method in class mgui.interfaces.InterfaceDisplayPanel
 
getCurrentTool3D() - Method in class mgui.interfaces.InterfaceDisplayPanel
 
getCurrentToolGraph() - Method in class mgui.interfaces.InterfaceDisplayPanel
 
getCurrentValue() - Method in class mgui.interfaces.graphs.AbstractGraphNode
 
getCurrentVertexData() - Method in class mgui.interfaces.shapes.InterfaceShape
Retrieves the currently selected vertex-wise data column.
getCurrentVertexData() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getCurrentVertexData() - Method in class mgui.interfaces.shapes.Vector2DInt
 
getCurrentVertexData() - Method in class mgui.interfaces.shapes.Vector3DInt
 
getCylinderPolygon(Polygon3D, float, int, Appearance) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
Returns a set of cylindrical segments which follow the path of the given polygon.
getCylinderPolygon(Polygon3D, float, int, Appearance, List<Color>) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
Returns a set of cylindrical segments which follow the path of the given polygon.
getCylinderSegment(Point3f, Point3f, float, int, Appearance) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
 
getData() - Method in class mgui.interfaces.io.DataBridgeXY
 
getData() - Method in interface mgui.interfaces.io.DataInputStream
Returns a sample of the current state of this input stream.
getData() - Method in class mgui.interfaces.io.temp.TempBitmapDrawer
 
getData() - Method in class mgui.interfaces.shapes.VertexDataColumn
Returns the data array underlying this column.
getDataAsBytes() - Method in class mgui.interfaces.io.DataBridgeXY
 
getDataAsBytes() - Method in interface mgui.interfaces.io.DataInputStream
Returns a sample of the current state of this stream as a byte array.
getDataAsDouble() - Method in class mgui.interfaces.shapes.VertexDataColumn
Returns the vertex-wise data as type double
getDatabaseNames(String) - Static method in class mgui.datasources.DataSourceDrivers
 
getDatabases() - Method in class mgui.datasources.DataSourceDriver
If implemented, returns a list of properties the databases currently accessible through this driver.
getDatabases(HashMap<String, HashMap<String, String>>) - Method in class mgui.datasources.DataSourceDriver
If implemented, returns a map of properties the databases currently accessible through this driver.
getDatabases(HashMap<String, HashMap<String, String>>) - Method in class mgui.datasources.mysql.MySQLDriver
 
getDatabases(HashMap<String, HashMap<String, String>>) - Method in class mgui.datasources.postgresql.PostgreSQLDriver
 
getDataBufferType() - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
 
getDataBufferType(String) - Static method in class mgui.datasources.DataTypes
 
getDataBufferType(DataType) - Static method in class mgui.datasources.DataTypes
 
getDataBufferTypeStr(int) - Static method in class mgui.datasources.DataTypes
 
getDataDims() - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
 
getDataDims() - Method in interface mgui.interfaces.shapes.volume.VolumeMetadata
The data dimensions: (x, y, z) or (x, y, z, t).
getDataDims() - Method in class mgui.io.foreign.fsl.FSLVolumeMetadata
 
getDataDims() - Method in class mgui.io.foreign.wunil.WunilDataset
 
getDataDims() - Method in class mgui.io.standard.nifti.NiftiMetadata
 
getDataElements(int, int, Object, DataBuffer) - Method in class mgui.interfaces.shapes.util.GridSampleModel
Returns data for a single pixel in a primitive array of type TransferType.
getDataField() - Method in class mgui.interfaces.datasources.EditDataFieldDialogBox
 
getDataFields() - Method in class mgui.io.domestic.datasources.ImportDataTableOptions
Returns the DataField objects defined for this options (i.e., corresponding to the specified input files).
getDataFilename() - Method in class mgui.io.standard.nifti.Nifti1Dataset
Get the filename for the dataset data file
getDataFlavor() - Method in class mgui.pipelines.InterfacePipeline
 
getDataFlavor() - Method in class mgui.pipelines.PipelineFork
 
getDataFlavor() - Method in class mgui.pipelines.PipelineProcessInstance
 
getDataFlavor() - Method in class mgui.pipelines.PipelineTask
 
getDataForVector(int) - Method in class mgui.interfaces.shapes.VectorSet3DInt
 
getDataForVector(String, int) - Method in class mgui.interfaces.shapes.VectorSet3DInt
 
getDataFromSet() - Method in class mgui.interfaces.shapes.Vector3DInt
 
getDataFromSet(String) - Method in class mgui.interfaces.shapes.Vector3DInt
 
getDataItem(String) - Method in class mgui.interfaces.projects.ProjectDirectory
 
getDataItems() - Method in class mgui.interfaces.projects.ProjectDirectory
Returns a sorted list of this directory's prespecified data items
getDataLineColour() - Method in class mgui.interfaces.shapes.Vector2DInt
 
getDataLineHeight() - Method in class mgui.interfaces.shapes.Vector2DInt
 
getDataLineOffset() - Method in class mgui.interfaces.shapes.Vector2DInt
 
getDataLink(String, String) - Method in class mgui.interfaces.shapes.InterfaceShape
DATA LINK STUFF
getDataMaskedDoubleValues(ArrayList<MguiNumber>, MeshDataMaskOptions) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
 
getDataMaskedDoubleValues(ArrayList<MguiNumber>, MeshDataMaskOptions, VertexSelection) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
 
getDataMaskedIntegerValues(ArrayList<MguiNumber>, MeshDataMaskOptions) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
 
getDataMaskedIntegerValues(ArrayList<MguiNumber>, MeshDataMaskOptions, VertexSelection) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
 
getDataMax() - Method in class mgui.interfaces.shapes.InterfaceShape
 
getDataMax() - Method in class mgui.interfaces.shapes.PointSet2DInt
 
getDataMax() - Method in class mgui.interfaces.shapes.Vector2DInt
 
getDataMax() - Method in class mgui.interfaces.shapes.Vector3DInt
 
getDataMax() - Method in class mgui.interfaces.shapes.VertexDataColumn
Returns the data maximum for this column
getDataMaxFromSet() - Method in class mgui.interfaces.shapes.Vector3DInt
 
getDataMin() - Method in class mgui.interfaces.shapes.InterfaceShape
 
getDataMin() - Method in class mgui.interfaces.shapes.PointSet2DInt
 
getDataMin() - Method in class mgui.interfaces.shapes.Vector2DInt
 
getDataMin() - Method in class mgui.interfaces.shapes.Vector3DInt
 
getDataMin() - Method in class mgui.interfaces.shapes.VertexDataColumn
Returns the data minimum for this column
getDataMinFromSet() - Method in class mgui.interfaces.shapes.Vector3DInt
 
getDataQueries() - Method in class mgui.datasources.DataSource
Returns a list of the queries associated with this data source.
getDataQuery(String) - Method in class mgui.datasources.DataSource
 
getDataset() - Method in class mgui.io.foreign.wunil.WunilVolumeLoader
 
getDataSize(BufferedImage) - Static method in class mgui.util.Colours
Returns the size, in bytes, of this image
getDataSize(String) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
 
getDataSource() - Method in class mgui.datasources.DataQuery
 
getDataSource() - Method in interface mgui.datasources.DataSourceItem
 
getDataSource() - Method in class mgui.datasources.DataTable
 
getDataSource() - Method in class mgui.datasources.DataTableSet
 
getDataSource() - Method in class mgui.datasources.LinkedDataStream
 
getDataSource() - Method in class mgui.interfaces.datasources.DataSourceDialogPanel
 
getDataSource() - Method in class mgui.interfaces.datasources.DataSourceListDialogPanel
 
getDataSource() - Method in class mgui.interfaces.io.DataSourceEvent
 
getDataSource() - Method in class mgui.io.domestic.datasources.DataSourceXMLHandler
 
getDataSource() - Method in class mgui.io.domestic.datasources.ImportDataTableOptions
 
getDataSource(String) - Method in class mgui.interfaces.InterfaceWorkspace
 
getDataSourceDialogPanel() - Method in class mgui.datasources.DataSourceDriver
Returns a DataSourceDialogPanel to specify this data source.
getDataSourceDialogPanel() - Method in class mgui.datasources.mysql.MySQLDriver
 
getDataSourceDialogPanel() - Method in class mgui.datasources.postgresql.PostgreSQLDriver
 
getDataSourceDriver() - Method in class mgui.datasources.DataSource
Returns the DataSourceDriver associated with this data source.
getDataSourceDriver(String) - Static method in class mgui.interfaces.InterfaceEnvironment
 
getDataSourceDriverByClass(String) - Static method in class mgui.interfaces.InterfaceEnvironment
 
getDataSourceDriverNames() - Static method in class mgui.interfaces.InterfaceEnvironment
Returns a list of the currently loaded data source drivers.
getDataSourceFromUrl(String) - Method in class mgui.datasources.DataSourceDriver
Extracts a data source name from a driver-specific URL
getDataSourceFromUrl(String) - Method in class mgui.datasources.mysql.MySQLDriver
 
getDataSourceFromUrl(String) - Method in class mgui.datasources.postgresql.PostgreSQLDriver
 
getDataSourceName() - Method in class mgui.interfaces.datasources.DataSourceDialogBox
 
getDataSourceNode() - Method in class mgui.interfaces.InterfaceWorkspace
 
getDataSources() - Static method in class mgui.interfaces.InterfaceEnvironment
Returns a list of the data sources loaded at init
getDataSources() - Method in class mgui.interfaces.InterfaceWorkspace
Returns a list of all data sources associated with this workspace.
getDataSources() - Method in interface mgui.models.dynamic.DynamicModelEnvironment
 
getDataSources() - Method in class mgui.models.environments.SimpleEnvironment
 
getDataSources() - Method in class mgui.neuro.networks.AbstractNeuralNet
 
getDataSourceUrl() - Method in class mgui.interfaces.datasources.DataSourceDialogBox
 
getDataStream() - Method in class mgui.interfaces.shapes.datasources.DataSourceLinkDialogBox
 
getDataTable() - Method in class mgui.interfaces.datasources.EditDataTableDialog
 
getDataTransferType() - Method in class mgui.interfaces.shapes.VertexDataColumn
Determines the data transfer type (as defined by DataBuffer) for this data column.
getDatatype() - Method in class mgui.io.standard.nifti.Nifti1Dataset
Get the dataset datatype.
getDataType() - Method in class mgui.datasources.DataField
Returns the data type for this field; see Types.
getDataType() - Method in interface mgui.interfaces.shapes.volume.VolumeMetadata
The data type; must correspond to DataBuffer types.
getDataType() - Method in class mgui.interfaces.shapes.Volume3DInt
Returns the data type of the current column.
getDataType() - Method in class mgui.io.foreign.fsl.FSLVolumeMetadata
 
getDataType() - Method in class mgui.io.foreign.wunil.WunilDataset
 
getDataType() - Method in class mgui.io.standard.nifti.NiftiMetadata
 
getDataType(int) - Static method in class mgui.io.standard.nifti.util.NiftiFunctions
 
getDataType(String) - Method in class mgui.interfaces.shapes.Volume3DInt
Returns the data type of column.
getDataType(String) - Method in class mgui.io.domestic.shapes.VolumeOutputDialogBox
 
getDataTypeList() - Static method in class mgui.datasources.DataTypes
Returns a sorted list of strings representing data types as specified in the setDataTypes method
getDataTypeMap() - Method in class mgui.datasources.DataField
 
getDataTypeStr() - Method in class mgui.datasources.DataField
 
getDataTypeStr(int) - Method in class mgui.io.domestic.shapes.VolumeOutputDialogBox
 
getDataTypeString(int) - Method in class mgui.io.standard.nifti.NiftiMetadata
 
getDatumAtPoint(String, Point3f) - Method in class mgui.interfaces.shapes.Volume3DInt
Returns the datum from the column for the voxel enclosing point.
getDatumAtPoint(Point3f) - Method in class mgui.interfaces.shapes.Volume3DInt
Returns the datum from the current column for the voxel enclosing point.
getDatumAtVertex(int) - Method in class mgui.interfaces.shapes.InterfaceShape
Returns the datum from the current column at index.
getDatumAtVertex(String, int) - Method in class mgui.interfaces.shapes.InterfaceShape
Returns the datum from column at index.
getDatumAtVertex(String, int) - Method in class mgui.interfaces.shapes.Shape2DInt
 
getDatumAtVoxel(int[]) - Method in class mgui.interfaces.shapes.Volume3DInt
Returns the datum from the current column at index.
getDatumAtVoxel(int, int, int) - Method in class mgui.interfaces.shapes.Volume3DInt
Returns the datum from the current column at index.
getDatumAtVoxel(String, int[]) - Method in class mgui.interfaces.shapes.Volume3DInt
Returns the datum from column at index.
getDatumAtVoxel(String, int, int, int) - Method in class mgui.interfaces.shapes.Volume3DInt
Returns the datum from column at index.
getDecimalFormat(int) - Static method in class mgui.numbers.NumberFunctions
 
getDecimalFormat(int, boolean) - Static method in class mgui.numbers.NumberFunctions
 
getDefault2() - Static method in class mgui.interfaces.maps.ContinuousColourMap
 
getDefault3() - Static method in class mgui.interfaces.maps.ContinuousColourMap
 
getDefaultClosedIcon() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
Returns the default icon, for the current laf, that is used to represent non-leaf nodes that are not expanded.
getDefaultColourMap() - Method in class mgui.interfaces.shapes.InterfaceShape
 
getDefaultEditor(Class<?>) - Method in class mgui.interfaces.attributes.table.InterfaceAttributeTable
 
getDefaultIOType(InterfaceShape, int) - Static method in class mgui.io.util.IoFunctions
Returns the first instance in InterfaceEnvironment of an InterfaceIOType compatible with shape.
getDefaultLayout() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
 
getDefaultLeafIcon() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
Returns the default icon, for the current laf, that is used to represent leaf nodes.
getDefaultNameMap(Mesh3DInt, String) - Method in class mgui.io.foreign.caret.CaretPaintWriter
 
getDefaultOpenIcon() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
Returns the default icon, for the current laf, that is used to represent non-leaf nodes that are expanded.
getDefaultOptions() - Method in class mgui.io.domestic.shapes.VolumeFileLoader
Returns a default set of options for loading a volume with this loader.
getDefaultOptions() - Method in class mgui.io.foreign.caret.CaretSurfaceWriter
 
getDefaultParameters() - Method in class au.edu.unsw.cse.Applet3d
 
getDefaultParameters() - Method in class au.edu.unsw.cse.AppletHull
 
getDefaultRenderer(Class<?>) - Method in class mgui.interfaces.attributes.table.InterfaceAttributeTable
 
getDefaultShapeAttributes2D() - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
 
getDefaultShapeAttributes3D() - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
 
getDefaultSpatialUnit() - Static method in class mgui.interfaces.InterfaceEnvironment
 
getDefaultUnit() - Method in class mgui.interfaces.shapes.ShapeModel3D
Returns the default spatial unit for this shape model
getDefaultValue() - Method in class mgui.datasources.DataField
 
getDefaultVolume() - Static method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
 
getDegToRad(double) - Static method in class mgui.geometry.util.GeometryFunctions
Converts degrees to radians.
getDelay() - Method in interface mgui.models.dynamic.DynamicModelEvent
 
getDelay() - Method in class mgui.models.events.SimpleEvent
 
getDelay() - Method in class mgui.models.updaters.PulseTrainUpdater.CurrentPulse
 
getDelay() - Method in class mgui.neuro.components.AbstractNeuroComponent
 
getDelay() - Method in class mgui.neuro.components.simple.SimpleEvent
 
getDelay() - Method in class mgui.neuro.updaters.PulseTrainUpdater.CurrentPulse
 
getDeltas(double[]) - Method in class mgui.models.environments.SimpleEnvironment
Returns the difference between this environment's current state and the given values.
getDendrites() - Method in class mgui.neuro.components.AbstractNeuron
 
getDendrites() - Method in class mgui.neuro.components.compartments.CompartmentalNeuron
 
getDendrites() - Method in interface mgui.neuro.components.Neuron
 
getDerivative(ArrayList<Double>, int) - Static method in class mgui.neuro.stats.SignalProcessing
Returns a set of data points which represent the orderth order derivative of curve.
getDescription() - Method in class mgui.interfaces.shapes.util.ImageFilter
 
getDescription() - Method in class mgui.io.standard.xml.svg.SVGFileFilter
 
getDescription() - Method in class mgui.io.util.WildcardFileFilter
 
getDiagonal() - Method in class mgui.geometry.Rect2D
 
getDiagonalLength() - Method in class mgui.geometry.Rect2D
 
getDialog() - Method in class mgui.interfaces.events.DialogActionEvent
 
getDialog() - Method in class mgui.interfaces.io.InterfaceIOType
 
getDialogBox() - Method in class mgui.interfaces.tools.dialogs.DialogTool
 
getDialogBox() - Method in class mgui.interfaces.tools.shapes.ToolCreateMeshFromPolylines
 
getDialogBox() - Method in class mgui.interfaces.tools.shapes.ToolCutMeshWithPlane
 
getDialogBox() - Method in class mgui.interfaces.tools.shapes.ToolGetConvexHull2D
 
getDialogBox() - Method in class mgui.interfaces.tools.shapes.ToolGetMeshIntersectionPolylines
 
getDialogBox(JFrame) - Method in class mgui.interfaces.tools.shapes.ToolCreateMeshFromPolylines
 
getDialogInstance(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Method in class mgui.interfaces.io.InterfaceIOType
Returns an instance of the dialog box associated with this I/O type.
getDialogPanelInstance(VideoTask) - Method in class mgui.interfaces.graphics.video.VideoTaskType
 
getDialogType() - Method in class mgui.interfaces.InterfaceDialogBox
 
getDiam() - Method in class mgui.neuro.components.compartments.CompartmentalDendrite
 
getDifference(MguiNumber, MguiNumber) - Static method in class mgui.numbers.NumberFunctions
 
getDim(int) - Method in class mgui.util.Colour
 
getDim(int) - Method in class mgui.util.Colour3f
 
getDim(int) - Method in class mgui.util.Colour4f
 
getDimensions() - Method in interface mgui.interfaces.math.VariableObject
Returns the dimensions of this object as an array of integers
getDimensions() - Method in class mgui.interfaces.shapes.Mesh3DInt
 
getDimensions() - Method in class mgui.interfaces.shapes.PointSet3DInt
 
getDimensions() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getDimensions() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getDimensions() - Method in class mgui.interfaces.variables.MatrixInt
 
getDimensions() - Method in class mgui.interfaces.variables.StringVectorInt
 
getDimensions() - Method in class mgui.interfaces.variables.VariableInt
 
getDimensions() - Method in class mgui.interfaces.variables.VectorInt
 
getDims() - Method in class mgui.geometry.Grid3D
Returns the S, T, R, V dimensions, as an int array
getDims() - Method in class mgui.util.Colour
 
getDims() - Method in class mgui.util.Colour1f
 
getDims() - Method in class mgui.util.Colour2f
 
getDims() - Method in class mgui.util.Colour3f
 
getDims() - Method in class mgui.util.Colour4f
 
getDir() - Method in class mgui.io.domestic.maps.NameMapOutOptions
 
getDirectory(String) - Static method in class mgui.io.util.IoFunctions
Returns the lowest directory in this path; path must specify a directory.
getDirectoryName() - Method in class mgui.interfaces.projects.ProjectDirectory
 
getDirFilter() - Static method in class mgui.interfaces.io.InterfaceFile
 
getDirFilter() - Static method in class mgui.io.util.IoFunctions
 
getDirFilter2() - Static method in class mgui.io.util.IoFunctions
 
getDirs(File) - Static method in class mgui.io.util.IoFunctions
Returns all directories, in top-down order, found in path
getDisappear() - Method in class au.edu.unsw.cse.VRMLState
 
getDiscreteColourMaps() - Static method in class mgui.interfaces.InterfaceEnvironment
Returns all loaded discrete colour maps.
getDiscreteMap(int, int) - Method in class mgui.interfaces.maps.ColourMap
Compile and return a discrete colour map of size size with channels interleaved data channels.
getDiscreteMap(int, int, boolean) - Method in class mgui.interfaces.maps.ColourMap
Compile and return a discrete colour map of size size with channels interleaved data channels.
getDiscreteMap(int, int, boolean) - Method in class mgui.interfaces.maps.ContinuousColourMap
 
getDiscreteMap(int, int, boolean) - Method in class mgui.interfaces.maps.DiscreteColourMap
 
getDisplay() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplayTitle
 
getDisplayObjectsNode() - Method in class mgui.interfaces.graphics.InterfaceGraphic
Returns a tree node containing a list of objects displayable by a class of InterfaceGraphic.
getDisplayObjectsNode() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
Returns a tree node containing a list of objects displayable by this class of InterfaceGraphic.
getDisplayObjectsNode() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getDisplayObjectsNode() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
 
getDisplayObjectsNode() - Method in class mgui.interfaces.tables.InterfaceDataTable
 
getDisplayObjectsNode(InterfaceDisplayPanel) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
 
getDisplayObjectsNode(InterfaceDisplayPanel) - Method in class mgui.interfaces.plots.InterfacePlotDisplay
 
getDisplayPanel() - Method in class mgui.interfaces.DisplayPanelEvent
 
getDisplayPanel() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
 
getDisplayPanel() - Static method in class mgui.interfaces.InterfaceSession
Returns the top display panel for the current session.
getDisplayPanel() - Method in class mgui.interfaces.InterfaceWorkspace
 
getDisplayPanel() - Method in class mgui.interfaces.shapes.ShapeModel3D
 
getDisplayPanel() - Method in class mgui.io.domestic.maps.DiscreteColourMapInOptions
 
getDisplayPanel() - Method in class mgui.io.domestic.maps.NameMapInOptions
 
getDisplayPanel() - Method in class mgui.io.domestic.maps.NameMapOutOptions
 
getDisplayPanel() - Method in class mgui.io.domestic.shapes.PointSet2DInputOptions
 
getDisplayPanel() - Method in class mgui.io.domestic.shapes.PointSet3DDataInputOptions
 
getDisplayPanel() - Method in class mgui.io.domestic.shapes.PointSet3DInputOptions
 
getDisplayPanel() - Method in class mgui.io.domestic.shapes.PolygonSet3DInputOptions
 
getDisplayPanel() - Method in class mgui.io.domestic.shapes.SurfaceDataOutputOptions
 
getDisplayPanel() - Method in class mgui.io.domestic.shapes.SurfaceInputOptions
 
getDisplayPanel() - Method in class mgui.io.domestic.shapes.SurfaceOutputOptions
 
getDisplayPanel() - Method in class mgui.io.domestic.shapes.VectorSet3DInputOptions
 
getDisplayPanel() - Method in class mgui.io.domestic.variables.MatrixOutOptions
 
getDisplayPanel() - Method in class mgui.io.foreign.caret.CaretMetricOptions
 
getDistance() - Method in class mgui.interfaces.maps.Camera3D
 
getDistance(Point2f, Point2f) - Static method in class mgui.geometry.Point2D
 
getDistance(Point2f, Point2f) - Static method in class mgui.geometry.util.GeometryFunctions
 
getDistance(Point3d, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Calculates the distance from pt to plane, signed with respect to its normal.
getDistance(Point3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Calculates the absolute distance from pt to plane
getDistanceWeightedGraphForMesh(Mesh3D) - Static method in class mgui.interfaces.graphs.util.GraphFunctions
Converts mesh to a weighted graph.
getDocumentBase() - Method in class au.edu.unsw.cse.FakeAppletStub
 
getDotProduct(Point2f, Point2f, Point2f) - Static method in class mgui.geometry.util.GeometryFunctions
 
getDoubleArray(Volume3DInt, String) - Method in class mgui.io.standard.nifti.NiftiVolumeWriter
 
getDoubleFromBytes(byte[], ByteOrder) - Static method in class mgui.io.util.IoFunctions
 
getDoubleParameter(String, double) - Method in class au.edu.unsw.cse.Applet3d
 
getDoubleValue(byte) - Static method in class mgui.geometry.volume.VolumeFunctions
 
getDoubleValueAtVertex(int) - Method in class mgui.interfaces.shapes.VertexDataColumn
Returns the value in this column for the vertex at index, as a double
getDoubleValueAtVoxel(int, int, int) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
Returns the value at voxel index [i, j, k]
getDrawingEngine() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
 
getDrawingEngine() - Method in class mgui.interfaces.graphs.shapes.GraphShape
 
getDrawingEngine() - Method in interface mgui.interfaces.shapes.ShapePanel2D
Returns the drawing engine for this panel
getDrawOnlyCurrent2D() - Method in class mgui.interfaces.shapes.SectionSet2DInt
 
getDriver() - Method in class mgui.datasources.DataConnection
 
getDriver(String) - Static method in class mgui.datasources.DataSourceDrivers
 
getDrivers() - Static method in class mgui.datasources.DataSourceDrivers
 
getDrivers() - Method in class mgui.interfaces.datasources.DataSourceDriverOptions
Returns a hash map of the currently loaded data source JDBC drivers.
getDTD() - Method in class mgui.datasources.DataConnection
 
getDTD() - Method in class mgui.datasources.DataField
 
getDTD() - Method in class mgui.datasources.DataQuery
 
getDTD() - Method in class mgui.datasources.DataSource
 
getDTD() - Method in class mgui.datasources.DataTable
 
getDTD() - Method in class mgui.datasources.DataTableSet
 
getDTD() - Method in class mgui.geometry.Shape2D
 
getDTD() - Method in class mgui.geometry.Shape3D
 
getDTD() - Method in class mgui.image.util.WindowedColourModel
 
getDTD() - Method in class mgui.interfaces.attributes.Attribute
 
getDTD() - Method in class mgui.interfaces.attributes.AttributeList
 
getDTD() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
 
getDTD() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
 
getDTD() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getDTD() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
 
getDTD() - Method in class mgui.interfaces.graphics.video.RotateView3DTask
 
getDTD() - Method in class mgui.interfaces.graphics.video.SetView3DTask
 
getDTD() - Method in class mgui.interfaces.graphics.video.Video
 
getDTD() - Method in class mgui.interfaces.graphics.video.VideoTask
 
getDTD() - Method in class mgui.interfaces.graphics.View3D
 
getDTD() - Method in class mgui.interfaces.graphs.AbstractGraphEdge
 
getDTD() - Method in class mgui.interfaces.graphs.AbstractGraphNode
 
getDTD() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
 
getDTD() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
 
getDTD() - Method in class mgui.interfaces.InterfaceDisplayPanel
 
getDTD() - Method in class mgui.interfaces.InterfaceWorkspace
 
getDTD() - Method in class mgui.interfaces.layouts.InterfaceLayoutWindow
 
getDTD() - Method in class mgui.interfaces.layouts.LayoutItem
 
getDTD() - Method in class mgui.interfaces.maps.Camera3D
 
getDTD() - Method in class mgui.interfaces.maps.ColourMap
 
getDTD() - Method in class mgui.interfaces.maps.Map2D
 
getDTD() - Method in class mgui.interfaces.maps.Map3D
 
getDTD() - Method in class mgui.interfaces.maps.NameMap
 
getDTD() - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
 
getDTD() - Method in class mgui.interfaces.plots.InterfacePlotDisplay
 
getDTD() - Method in class mgui.interfaces.projects.InterfaceProject
 
getDTD() - Method in class mgui.interfaces.projects.ProjectDirectory
 
getDTD() - Method in class mgui.interfaces.projects.ProjectInstance
 
getDTD() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
 
getDTD() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getDTD() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getDTD() - Method in class mgui.interfaces.shapes.ShapeModel3D
 
getDTD() - Method in class mgui.interfaces.shapes.VertexDataColumn
 
getDTD() - Method in class mgui.interfaces.tables.InterfaceDataTable
 
getDTD() - Method in class mgui.interfaces.variables.VariableInt
 
getDTD() - Method in interface mgui.interfaces.xml.XMLObject
Returns the Data Type Declaration (DTD) for this object's XML representation
getDTD() - Method in class mgui.io.InterfaceIOOptions
 
getDTD() - Method in class mgui.neuro.imaging.camino.CaminoProject
 
getDTD() - Method in class mgui.numbers.MguiBoolean
 
getDTD() - Method in class mgui.numbers.MguiDouble
 
getDTD() - Method in class mgui.numbers.MguiFloat
 
getDTD() - Method in class mgui.numbers.MguiInteger
 
getDTD() - Method in class mgui.numbers.MguiLong
 
getDTD() - Method in class mgui.numbers.MguiShort
 
getDTD() - Method in class mgui.pipelines.PipelineProcess
 
getDTD() - Method in class mgui.pipelines.PipelineTask
 
getDTD() - Method in class mgui.util.Colour
 
getDuplicateFaces(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns an array of booleans where true indicates a duplicate face
getDuplicateNodes(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns an array of booleans where true indicates a duplicate node
getDuration() - Method in class mgui.models.updaters.PulseTrainUpdater.CurrentPulse
 
getDuration() - Method in class mgui.neuro.updaters.PulseTrainUpdater.CurrentPulse
 
getDynamicModelNode() - Method in class mgui.interfaces.InterfaceWorkspace
 
getDynamicModels() - Method in class mgui.interfaces.InterfaceWorkspace
 
getEdge(int) - Method in class mgui.geometry.mesh.MeshEdgeSet
 
getEdgeAppearance(AbstractGraphEdge) - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
 
getEdgeColour(AbstractGraphEdge) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt
 
getEdgeColour(AbstractGraphEdge) - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
 
getEdgeFactory() - Static method in class mgui.interfaces.graphs.util.GraphFunctions
 
getEdgeFactory(Class<T>) - Static method in class mgui.interfaces.graphs.util.GraphFunctions
 
getEdgeIndex(int, int) - Method in class mgui.geometry.mesh.MeshEdgeSet
Returns the index of the edge connecting n1 and n2.
getEdgeLabeller() - Static method in class mgui.interfaces.graphs.util.GraphFunctions
Returns a Transformer object which produces a label for an edge.
getEdgeLabelRenderer() - Static method in class mgui.interfaces.graphs.util.GraphFunctions
Returns an edge label renderer which can be turned off.
getEdgeLengths() - Method in class mgui.geometry.Triangle3D
Returns edge lengths as an array ordered by: |AB|,|BC|,|AC|.
getEdgeLengths(Mesh3D, ArrayList<MeshEdge>) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns a list of edge lengths for the given set of edges
getEdges() - Method in class mgui.geometry.Box3D
Returns a set of edges from this box.
getEdges() - Method in class mgui.geometry.mesh.MeshEdgeSet
 
getEdges() - Method in class mgui.geometry.Triangle3D
Returns edges as an array of vectors ordered by: AB,BC,CA.
getEdges(int, int) - Method in class mgui.geometry.mesh.MeshEdgeSet
 
getEdgeScale(AbstractGraphEdge) - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
 
getEdgeStroke(AbstractGraphEdge) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt
 
getEdgeTri(int, int) - Method in class mgui.geometry.mesh.MeshEdgeSet
Returns the ith triangle index associated with this edge.
getEdgeTypeAsString(EdgeType) - Static method in class mgui.io.domestic.graphs.xml.GraphXMLFunctions
Returns a string representation of type.
getEdgeTypeForString(String) - Static method in class mgui.io.domestic.graphs.xml.GraphXMLFunctions
Returns the type corresponding to the string representation type.
getEdgeVisibilityPredicate(boolean) - Static method in class mgui.interfaces.graphs.util.GraphFunctions
Returns a predicate object to control the visibility of edges in a graph.
getEdgeWeightColourMap() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
 
getEdgeWeightColourMap() - Method in class mgui.interfaces.shapes.graphs.Graph2DInt
 
getEdgeWeightColourMap() - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
 
getEditingRow() - Method in class mgui.interfaces.trees.InterfaceTreeTable
 
getEditorForObject(Object) - Method in class mgui.interfaces.trees.InterfaceTreeCellEditor
 
getEditStatements(DataSource, DataTable, DataTable, HashMap<String, String>) - Static method in class mgui.datasources.util.DataSourceFunctions
Generates a set of SQL statements which transform old_table into new_table.
getEffectiveMask() - Method in class mgui.interfaces.shapes.Volume3DInt
Returns the union of all masks which are currently set.
getElapsedTime() - Method in class mgui.pipelines.PipelineTask
Returns the time, in milliseconds, elapsed since this task was started.
getElement() - Method in class mgui.graphs.networks.NetworkGraphEvent
 
getEllipse() - Method in class mgui.interfaces.shapes.Ellipse2DInt
 
getEnclosingVoxel(Point3f) - Method in class mgui.geometry.Grid3D
Determines the voxel which encloses point p.
getEncoding() - Method in class mgui.datasources.postgresql.PostgreSQLDriver
Returns the character encoding for this database; see http://www.postgresql.org/docs/8.1/static/multibyte.html as this applies to PostgreSQL.
getEncodingForStr(String) - Static method in class mgui.interfaces.xml.XMLFunctions
Returns the XMLFormat corresponding to format.
getEncodingStr(XMLObject.XMLEncoding) - Static method in class mgui.interfaces.xml.XMLFunctions
Returns the string corresponding to encoding.
getEnd() - Method in class au.edu.unsw.cse.PointStack
 
getEndpoint(Point2f) - Method in class mgui.geometry.Radius2D
 
getEndpoint(Point2f, double, double) - Static method in class mgui.geometry.util.GeometryFunctions
 
getEndPoint() - Method in class mgui.geometry.Vector2D
 
getEndPoint() - Method in class mgui.geometry.Vector3D
 
getEndRatio() - Method in class mgui.interfaces.shapes.Vector2DInt
 
getEnergy() - Method in class mgui.neuro.networks.AbstractNeuralNet
Returns the energy calculation for this neural network.
getEnergy() - Method in class mgui.neuro.networks.KohonenNet
 
getEnergy() - Method in class mgui.neuro.networks.PerceptronNet
 
getEnvironment() - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
Gets the system environment for this process; returns null if no environment is set.
getEnvironment() - Method in interface mgui.models.dynamic.DynamicModel
 
getEnvironment() - Method in interface mgui.models.dynamic.DynamicModelEnvironmentEvent
 
getEnvironment() - Method in class mgui.models.environments.SimpleEnvironmentEvent
 
getEnvironment() - Method in class mgui.models.networks.AbstractNetworkModel
 
getEnvironment() - Method in class mgui.neuro.components.AbstractMotorNeuron
 
getEnvironment() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalOutput
 
getError() - Method in interface mgui.models.dynamic.stats.DynamicModelStatistics
 
getError() - Method in class mgui.neuro.stats.SimpleStatistics
 
getEventType() - Method in class mgui.interfaces.TabbedDisplayEvent
 
getEventType() - Method in class mgui.interfaces.tools.ToolInputEvent
 
getExcludeToSelection() - Method in class mgui.interfaces.shapes.ShapeModel3D
 
getExclusionFilter() - Method in class mgui.interfaces.shapes.ShapeModel3D
 
getExtBounds() - Method in class mgui.interfaces.shapes.Polygon2DInt
 
getExtBounds() - Method in class mgui.interfaces.shapes.Rect2DInt
 
getExtBounds() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getExtensionFilter(String) - Static method in class mgui.io.util.IoFunctions
 
getExtensions() - Method in class mgui.interfaces.io.InterfaceIOType
 
getExtensionsList() - Method in class mgui.io.standard.nifti.Nifti1Dataset
Get list of extensions and return it as nx2 array
getFace(int) - Method in class mgui.geometry.Mesh3D
Returns the face at index i.
getFace(ObjFace) - Method in class mgui.io.foreign.wavefront.WavefrontSurfaceLoader
 
getFaceAngle(int, int) - Method in class mgui.geometry.Mesh3D
Returns the angle in face face at vertex i.
getFaceCount() - Method in class mgui.geometry.Mesh3D
Returns the number of faces in this mesh.
getFaceIndex(int) - Method in class mgui.geometry.mesh.MeshEdgeSet
Returns the face index (i.e., in the source mesh) of the triangle at tri_idx.
getFaceIndexArray() - Method in class mgui.geometry.Mesh3D
 
getFaceNodes(int) - Method in class mgui.geometry.Mesh3D
Returns this face's vertices as Point3f objects.
getFaces() - Method in class mgui.geometry.Mesh3D
 
getFaces() - Method in class mgui.interfaces.shapes.Box3DInt
 
getFaces(int) - Method in class mgui.geometry.mesh.FaceMesh
Returns a list of faces associated with vertex i.
getFaceTriangle(int) - Method in class mgui.geometry.Mesh3D
Returns a 3D triangle for face i.
getFactor() - Method in class mgui.models.updaters.LinearUpdater
 
getFactorX() - Method in class mgui.interfaces.plots.mgui.PlotMap2D
Returns the factor for the X axis
getFactory() - Method in class mgui.interfaces.graphs.DefaultGraphEdge
 
getFactory() - Method in class mgui.interfaces.graphs.DefaultGraphNode
 
getFactorY() - Method in class mgui.interfaces.plots.mgui.PlotMap2D
Returns the factor for the Y axis
getFailureMessage() - Method in class mgui.io.domestic.datasources.DataSourceDriverWriter
 
getFailureMessage() - Method in class mgui.io.domestic.graphs.GraphFileLoader
 
getFailureMessage() - Method in class mgui.io.domestic.maps.NameMapWriter
 
getFailureMessage() - Method in class mgui.io.domestic.shapes.PolygonSet3DLoader
 
getFailureMessage() - Method in class mgui.io.domestic.shapes.SurfaceDataFileLoader
 
getFailureMessage() - Method in class mgui.io.domestic.shapes.SurfaceDataFileWriter
 
getFailureMessage() - Method in class mgui.io.domestic.shapes.SurfaceFileLoader
 
getFailureMessage() - Method in class mgui.io.domestic.shapes.SurfaceFileWriter
 
getFailureMessage() - Method in class mgui.io.domestic.variables.MatrixFileWriter
 
getFailureMessage() - Method in class mgui.io.FileLoader
Returns a message to indicate that loading failed.
getFailureMessage() - Method in class mgui.io.FileWriter
 
getFailureMessage() - Method in class mgui.pipelines.InterfacePipeline
 
getFailureMessage() - Method in class mgui.pipelines.JavaProcess
 
getFailureMessage() - Method in class mgui.pipelines.NativeProcess
 
getFailureMessage() - Method in class mgui.pipelines.PipelineFork
 
getFailureMessage() - Method in class mgui.pipelines.PipelineProcess
Returns the message to be displayed when this process has failed.
getFailureMessage() - Method in class mgui.pipelines.PipelineProcessInstance
 
getFailureMessage() - Method in class mgui.pipelines.PipelineTask
Message to display if this task failed
getFarthestVertices(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns a list of size mesh.n integers, such that list(i) = the index of the farthest vertex j from vertex i.
getFarthestVertices(Mesh3D, ArrayList<Double>) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns a list of size mesh.n integers, such that list(i) = the index of the farthest vertex j from vertex i.
getFarthestVertices(Mesh3D, ArrayList<Double>, ArrayList<Integer>) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns a list of size mesh.n integers, such that list(i) = the index of the farthest vertex j from vertex i.
getField(int) - Method in class mgui.datasources.DataRecordSet
 
getField(int) - Method in interface mgui.datasources.DataSet
 
getField(String) - Method in class mgui.datasources.DataRecordSet
Searches for and returns the field named name; case insensitive.
getField(String) - Method in class mgui.datasources.DataTable
 
getFieldClass(int) - Method in class mgui.datasources.DataRecordSet
 
getFieldClass(String) - Method in class mgui.datasources.DataRecordSet
 
getFieldClass(String) - Method in class mgui.datasources.DataTable
 
getFieldCount() - Method in class mgui.datasources.DataRecordSet
 
getFieldCount() - Method in interface mgui.datasources.DataSet
 
getFieldIndex(String) - Method in class mgui.datasources.DataRecordSet
 
getFieldList() - Method in class mgui.datasources.DataTable
 
getFieldName(int) - Method in class mgui.datasources.DataRecordSet
 
getFields() - Method in class mgui.datasources.DataRecordSet
 
getFields() - Method in class mgui.datasources.DataTable
 
getFieldVal(int) - Method in class mgui.datasources.DataRecordSet
 
getFieldVal(String) - Method in class mgui.datasources.DataRecordSet
Returns the current value of this field
getFile() - Method in class mgui.datasources.DataConnection
 
getFile() - Method in class mgui.interfaces.io.InterfaceFile
 
getFile() - Method in class mgui.io.FileLoader
Returns the current data file for this loader.
getFile() - Method in class mgui.io.FileWriter
 
getFile() - Method in class mgui.io.standard.nifti.NiftiVolumeLoader
 
getFileChooser() - Method in class mgui.io.DefaultIOOptions
 
getFileChooser() - Method in class mgui.io.domestic.datasources.ExportDataTableOptions
 
getFileChooser() - Method in class mgui.io.domestic.datasources.ImportDataTableOptions
 
getFileChooser() - Method in class mgui.io.domestic.graphs.GraphInputOptions
 
getFileChooser() - Method in class mgui.io.domestic.graphs.GraphOutputOptions
 
getFileChooser() - Method in class mgui.io.domestic.maps.DiscreteColourMapInOptions
 
getFileChooser() - Method in class mgui.io.domestic.maps.DiscreteColourMapOutOptions
 
getFileChooser() - Method in class mgui.io.domestic.maps.NameMapInOptions
 
getFileChooser() - Method in class mgui.io.domestic.maps.NameMapOutOptions
 
getFileChooser() - Method in class mgui.io.domestic.network.CorticalNetworkMatrixInOptions
 
getFileChooser() - Method in class mgui.io.domestic.pipelines.PipelineInputOptions
 
getFileChooser() - Method in class mgui.io.domestic.pipelines.PipelineOutputOptions
 
getFileChooser() - Method in class mgui.io.domestic.shapes.Graph3DOutputOptions
 
getFileChooser() - Method in class mgui.io.domestic.shapes.PointSet2DInputOptions
 
getFileChooser() - Method in class mgui.io.domestic.shapes.PointSet3DDataInputOptions
 
getFileChooser() - Method in class mgui.io.domestic.shapes.PointSet3DInputOptions
 
getFileChooser() - Method in class mgui.io.domestic.shapes.PolygonSet3DInputOptions
 
getFileChooser() - Method in class mgui.io.domestic.shapes.ShapeDataInputOptions
 
getFileChooser() - Method in class mgui.io.domestic.shapes.ShapeInputOptions
 
getFileChooser() - Method in class mgui.io.domestic.shapes.ShapeModel3DInputOptions
 
getFileChooser() - Method in class mgui.io.domestic.shapes.ShapeOutputOptions
 
getFileChooser() - Method in class mgui.io.domestic.shapes.SurfaceDataInputOptions
 
getFileChooser() - Method in class mgui.io.domestic.shapes.SurfaceDataOutputOptions
 
getFileChooser() - Method in class mgui.io.domestic.shapes.SurfaceInputOptions
 
getFileChooser() - Method in class mgui.io.domestic.shapes.SurfaceOutputOptions
 
getFileChooser() - Method in class mgui.io.domestic.shapes.VectorSet3DInputOptions
 
getFileChooser() - Method in class mgui.io.domestic.shapes.VolumeInputOptions
 
getFileChooser() - Method in class mgui.io.domestic.shapes.VolumeOutputOptions
 
getFileChooser() - Method in class mgui.io.domestic.variables.MatrixInOptions
 
getFileChooser() - Method in class mgui.io.domestic.variables.MatrixOutOptions
 
getFileChooser() - Method in class mgui.io.domestic.variables.StringVectorInOptions
 
getFileChooser() - Method in class mgui.io.domestic.videos.ImageStackVideoOptions
 
getFileChooser() - Method in class mgui.io.domestic.views.View3DInputOptions
 
getFileChooser() - Method in class mgui.io.domestic.views.View3DOutputOptions
 
getFileChooser() - Method in class mgui.io.foreign.caret.CaretAreaColourOutputOptions
 
getFileChooser() - Method in class mgui.io.foreign.caret.CaretMetricOptions
 
getFileChooser() - Method in class mgui.io.foreign.caret.CaretSurfaceOutOptions
 
getFileChooser() - Method in class mgui.io.foreign.minc.MincSurfaceDataOutOptions
 
getFileChooser() - Method in class mgui.io.foreign.pajek.PajekGraphInputOptions
 
getFileChooser() - Method in class mgui.io.InterfaceIOOptions
Returns a file chooser appropriate for this options instance
getFileChooser() - Method in class mgui.io.standard.xml.x3d.Vector3DInputOptions
 
getFileChooser() - Method in class mgui.io.standard.xml.XMLOutputOptions
 
getFileChooser(File) - Method in class mgui.io.DefaultIOOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.datasources.ExportDataTableOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.datasources.ImportDataTableOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.graphs.GraphInputOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.graphs.GraphOutputOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.maps.DiscreteColourMapInOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.maps.DiscreteColourMapOutOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.maps.NameMapInOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.maps.NameMapOutOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.network.CorticalNetworkMatrixInOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.pipelines.PipelineInputOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.pipelines.PipelineOutputOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.shapes.Graph3DOutputOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.shapes.PointSet2DInputOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.shapes.PointSet3DDataInputOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.shapes.PointSet3DInputOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.shapes.PolygonSet3DInputOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.shapes.ShapeDataInputOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.shapes.ShapeInputOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.shapes.ShapeModel3DInputOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.shapes.ShapeModel3DOutputOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.shapes.ShapeOutputOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.shapes.SurfaceDataInputOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.shapes.SurfaceDataOutputOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.shapes.SurfaceInputOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.shapes.SurfaceOutputOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.shapes.VectorSet3DInputOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.shapes.VolumeInputOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.shapes.VolumeOutputOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.variables.MatrixInOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.variables.MatrixOutOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.variables.StringVectorInOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.videos.ImageStackVideoOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.views.View3DInputOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.views.View3DOutputOptions
 
getFileChooser(File) - Method in class mgui.io.domestic.WorkspaceOutputOptions
 
getFileChooser(File) - Method in class mgui.io.foreign.caret.CaretAreaColourOutputOptions
 
getFileChooser(File) - Method in class mgui.io.foreign.caret.CaretMetricOptions
 
getFileChooser(File) - Method in class mgui.io.foreign.caret.CaretSurfaceInOptions
 
getFileChooser(File) - Method in class mgui.io.foreign.caret.CaretSurfaceOutOptions
 
getFileChooser(File) - Method in class mgui.io.foreign.minc.MincSurfaceDataOutOptions
 
getFileChooser(File) - Method in class mgui.io.foreign.pajek.PajekGraphInputOptions
 
getFileChooser(File) - Method in class mgui.io.InterfaceIOOptions
Returns a file chooser appropriate for this options instance
getFileChooser(File) - Method in class mgui.io.standard.xml.x3d.Vector3DInputOptions
 
getFileChooser(File) - Method in class mgui.io.standard.xml.XMLOutputOptions
 
getFileChooserFilter(ArrayList<String>, String) - Static method in class mgui.io.util.IoFunctions
 
getFileCount(File) - Static method in class mgui.io.util.IoFunctions
Counts the number of files contained in directory (recursive).
getFileCount(File, boolean) - Static method in class mgui.io.util.IoFunctions
Counts the number of files contained in directory.
getFileData() - Method in class mgui.io.foreign.vol.VolFileLoader
 
getFileFilter() - Method in class mgui.interfaces.io.InterfaceFile
 
getFileLoader() - Method in class mgui.datasources.DataSourceDriver
 
getFileLoader() - Method in interface mgui.interfaces.io.PersistentObject
Returns an instance of the file loader associated with this persistent object.
getFileLoader() - Method in class mgui.interfaces.projects.ProjectDataItem
 
getFileLoader() - Method in class mgui.interfaces.shapes.InterfaceShape
 
getFilenameForInstance(String) - Method in class mgui.interfaces.projects.ProjectDataItem
Constructs a filename from the given parameters and the file name form.
getFilenameForInstance(String, Integer) - Method in class mgui.interfaces.projects.ProjectDataItem
Constructs a filename from the given parameters and the file name form.
getFilenameForm() - Method in class mgui.interfaces.projects.ProjectDataItem
 
getFiles() - Method in class mgui.io.DefaultIOOptions
 
getFiles() - Method in class mgui.io.domestic.datasources.ExportDataTableOptions
 
getFiles() - Method in class mgui.io.domestic.datasources.ImportDataTableOptions
 
getFiles() - Method in class mgui.io.domestic.graphs.GraphInputOptions
 
getFiles() - Method in class mgui.io.domestic.graphs.GraphOutputOptions
 
getFiles() - Method in class mgui.io.domestic.maps.DiscreteColourMapInOptions
 
getFiles() - Method in class mgui.io.domestic.maps.DiscreteColourMapOutOptions
 
getFiles() - Method in class mgui.io.domestic.maps.NameMapInOptions
 
getFiles() - Method in class mgui.io.domestic.maps.NameMapOutOptions
 
getFiles() - Method in class mgui.io.domestic.network.CorticalNetworkMatrixInOptions
 
getFiles() - Method in class mgui.io.domestic.pipelines.PipelineInputOptions
 
getFiles() - Method in class mgui.io.domestic.pipelines.PipelineOutputOptions
 
getFiles() - Method in class mgui.io.domestic.shapes.Graph3DOutputOptions
 
getFiles() - Method in class mgui.io.domestic.shapes.PointSet2DInputOptions
 
getFiles() - Method in class mgui.io.domestic.shapes.PointSet3DDataInputOptions
 
getFiles() - Method in class mgui.io.domestic.shapes.PointSet3DInputOptions
 
getFiles() - Method in class mgui.io.domestic.shapes.PolygonSet3DInputOptions
 
getFiles() - Method in class mgui.io.domestic.shapes.ShapeDataInputOptions
 
getFiles() - Method in class mgui.io.domestic.shapes.ShapeInputOptions
 
getFiles() - Method in class mgui.io.domestic.shapes.ShapeModel3DInputOptions
 
getFiles() - Method in class mgui.io.domestic.shapes.ShapeOutputOptions
 
getFiles() - Method in class mgui.io.domestic.shapes.SurfaceDataInputOptions
 
getFiles() - Method in class mgui.io.domestic.shapes.SurfaceDataOutputOptions
 
getFiles() - Method in class mgui.io.domestic.shapes.SurfaceInputOptions
 
getFiles() - Method in class mgui.io.domestic.shapes.SurfaceOutputOptions
 
getFiles() - Method in class mgui.io.domestic.shapes.VectorSet3DInputOptions
 
getFiles() - Method in class mgui.io.domestic.shapes.VolumeInputOptions
 
getFiles() - Method in class mgui.io.domestic.shapes.VolumeOutputOptions
 
getFiles() - Method in class mgui.io.domestic.variables.MatrixInOptions
 
getFiles() - Method in class mgui.io.domestic.variables.MatrixOutOptions
 
getFiles() - Method in class mgui.io.domestic.variables.StringVectorInOptions
 
getFiles() - Method in class mgui.io.domestic.videos.ImageStackVideoOptions
 
getFiles() - Method in class mgui.io.domestic.views.View3DInputOptions
 
getFiles() - Method in class mgui.io.domestic.views.View3DOutputOptions
 
getFiles() - Method in class mgui.io.foreign.caret.CaretAreaColourOutputOptions
 
getFiles() - Method in class mgui.io.foreign.caret.CaretMetricOptions
 
getFiles() - Method in class mgui.io.foreign.minc.MincSurfaceDataInOptions
 
getFiles() - Method in class mgui.io.InterfaceIOOptions
Returns the list of files associated with this options instance
getFiles() - Method in class mgui.io.standard.xml.x3d.Vector3DInputOptions
 
getFiles() - Method in class mgui.io.standard.xml.XMLOutputOptions
 
getFiles(String, String) - Static method in class mgui.io.util.IoFunctions
 
getFileWriter() - Method in class mgui.datasources.DataSourceDriver
 
getFileWriter() - Method in interface mgui.interfaces.io.PersistentObject
Returns an instance of the file writer associated with this persistent object.
getFileWriter() - Method in class mgui.interfaces.projects.ProjectDataItem
 
getFileWriter() - Method in class mgui.interfaces.shapes.InterfaceShape
 
getFillColour() - Method in class mgui.interfaces.shapes.Mesh3DInt
Returns this shape's fill colour
getFilledArrow(double) - Static method in class mgui.interfaces.shapes.util.Point2DShape
Returns a basic filled arrow shape, oriented to the right (angle == 0).
getFilledCircle(double) - Static method in class mgui.interfaces.shapes.util.Point2DShape
 
getFilter() - Method in class mgui.interfaces.io.InterfaceIOType
 
getFilter(String[], String) - Static method in class mgui.interfaces.io.InterfaceFile
 
getFilteredByList(ArrayList<Comparable>, String) - Method in class mgui.datasources.DataTable
Enumerates the indices of records in this table where filter_field matches an element in list.
getFilteredSectionSet(SectionSet3DInt) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
Returns a section set which is sectSet, filtered by this selection set
getFilteredSectionSet(SectionSet3DInt) - Method in class mgui.interfaces.shapes.Shape2DSelectionSet
 
getFilteredShapeSet2D(ShapeSet2DInt) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
Return a shape2D set which is thisSet, filtered by this selection set.
getFilteredShapeSet3D(ShapeSet3DInt) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
Return a shape3D set which is thisSet, filtered by this selection set.
getFinalWidth() - Method in class mgui.interfaces.gui.InterfaceComboBoxBak
 
getFiringRate() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalConnection
 
getFiringRate() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
 
getFiringRate() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegionEvent
 
getFirstFrame() - Method in interface au.edu.unsw.cse.Object3d
 
getFirstFrame() - Method in class au.edu.unsw.cse.Object3dAdaptor
 
getFirstFrame() - Method in class au.edu.unsw.cse.Point3dObject3d
 
getFirstSection() - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getFirstSection() - Method in class mgui.interfaces.shapes.util.SectionSetIterator
 
getFirstSection() - Method in class mgui.morph.sections.MorphSections3DInt
 
getFirstSection() - Method in class mgui.morph.sections.util.MorphSectionSetIterator
 
getFirstVertex() - Method in class mgui.geometry.Polygon2D
 
getFixedWidth() - Method in class mgui.interfaces.gui.InterfaceComboBoxBak
 
getFixedWidth() - Method in class mgui.util.JMultiLineToolTip
 
getFlipNormals() - Method in class mgui.interfaces.shapes.Mesh3DInt
 
getFloat() - Method in class mgui.numbers.MguiFloat
Get this value as a float.
getFloatFromBytes(byte[], ByteOrder) - Static method in class mgui.io.util.IoFunctions
 
getFont() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
Gets the font of this component.
getFont() - Method in class mgui.interfaces.shapes.Text2DInt
 
getForkMenu() - Method in class mgui.interfaces.pipelines.trees.PipelineTree
 
getFormat() - Method in class mgui.interfaces.shapes.volume.Volume3DTexture
 
getFormat() - Method in class mgui.io.foreign.freesurfer.FreesurferVertexDataInOptions
 
getFractalSphereMesh(Point3f, float, int) - Static method in class mgui.geometry.mesh.MeshFunctions
 
getFrame() - Static method in class mgui.interfaces.InterfaceEnvironment
 
getFrameNo() - Method in class au.edu.unsw.cse.View3d
get the frame no
getFriendlyName(String) - Method in class mgui.datasources.DataSourceDriver
Converts string to a "friendly" string; i.e., replacing all illegal characters with acceptable ones.
getFrom() - Method in class mgui.interfaces.graphs.AbstractGraphEdge
 
getFromDataBufferType(int) - Static method in class mgui.datasources.DataTypes
 
getFullName() - Method in class mgui.interfaces.shapes.InterfaceShape
Returns a full name of this shape, including its parent model and shape sets, separated by dots.
getFullName() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
 
getFullName() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getFullName() - Method in interface mgui.interfaces.shapes.ShapeSet
 
getFurthestChild(K3DBinaryTree.K3DNode, Point3f) - Method in class mgui.geometry.util.K3DBinaryTree
 
getFWHMtoSigma(double) - Static method in class mgui.stats.StatFunctions
Converts full-width at half max to sigma (standard deviations)
getG_Ca() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getG_K() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getG_L() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getG_Na() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getGaussian(double, double, double) - Static method in class mgui.stats.StatFunctions
Returns the normalized probability of x given the normal probability distribution defined by mu (mean) and sigma (st dev).
getGaussian2(double, double, double) - Static method in class mgui.stats.StatFunctions
Returns the normalized probability of x given the normal probability distribution defined by mu (mean) and sigma (st dev).
getGaussianSmoothedValue(Volume3DInt, int[], int, Vector3f, float, float, float) - Static method in class mgui.geometry.volume.VolumeFunctions
Computes a value for voxel which is the weighted average of a Gaussian sampling of its neighbouring voxels, where the Gaussian is defined by a normal vector, its corresponding plane, and the sigma parameters sigma_normal and sigma_tangent.
getGenericInstance(String, Class<T>) - Static method in class mgui.interfaces.attributes.Attribute
 
getGenericType() - Method in class mgui.collections.ReifiedArrayList
 
getGeomDims() - Method in class mgui.geometry.Grid3D
Returns the geometric dimensions of this grid.
getGeomDims() - Method in interface mgui.interfaces.shapes.volume.VolumeMetadata
The geometric dimensions of the volume (x, y, z) or (S, T, R) in texture coordinates.
getGeomDims() - Method in class mgui.io.foreign.fsl.FSLVolumeMetadata
 
getGeomDims() - Method in class mgui.io.foreign.wunil.WunilDataset
 
getGeomDims() - Method in class mgui.io.standard.nifti.NiftiMetadata
 
getGeometricCenter() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getGeometricCenter(ArrayList<Point3f>) - Static method in class mgui.geometry.util.GeometryFunctions
Returns the geometric center of this list of points, which is the center of its bounding box.
getGeometricCenter(Shape3D) - Static method in class mgui.geometry.util.GeometryFunctions
Returns the geometric center of this list of points, which is the center of its bounding box.
getGeometry() - Method in class mgui.interfaces.shapes.InterfaceShape
Returns the Shape associated with this object
getGeometry() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getGeometry() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getGeometryInstance() - Method in class mgui.interfaces.shapes.Box3DInt
 
getGeometryInstance() - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
 
getGeometryInstance() - Method in class mgui.interfaces.shapes.Image2DInt
 
getGeometryInstance() - Method in class mgui.interfaces.shapes.InterfaceShape
Returns an instance of this InterfaceShape's geometry class.
getGeometryInstance() - Method in class mgui.interfaces.shapes.Mesh3DInt
 
getGeometryInstance() - Method in class mgui.interfaces.shapes.PointSet3DInt
 
getGeometryInstance() - Method in class mgui.interfaces.shapes.Polygon3DInt
 
getGeometryInstance() - Method in class mgui.interfaces.shapes.PolygonSet3DInt
 
getGeometryInstance() - Method in class mgui.interfaces.shapes.Rect3DInt
 
getGeometryInstance() - Method in class mgui.interfaces.shapes.SectionSet2DInt
 
getGeometryInstance() - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getGeometryInstance() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getGeometryInstance() - Method in class mgui.interfaces.shapes.Shape2DSelectionSet
 
getGeometryInstance() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getGeometryInstance() - Method in class mgui.interfaces.shapes.Volume3DInt
 
getGeometryInstance() - Method in class mgui.morph.sections.RadialRep2DInt
 
getGeomR() - Method in class mgui.geometry.Grid3D
Returns the geometric dimension in the R-axis.
getGeomS() - Method in class mgui.geometry.Grid3D
Returns the geometric dimension in the S-axis.
getGeomT() - Method in class mgui.geometry.Grid3D
Returns the geometric dimension in the T-axis.
getGlobeSphereMesh(Point3f, float, int) - Static method in class mgui.geometry.mesh.MeshFunctions
 
getGraph() - Method in class mgui.geometry.Graph2D
 
getGraph() - Method in class mgui.geometry.Graph3D
 
getGraph() - Method in interface mgui.interfaces.graphs.GraphableObject
 
getGraph() - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
 
getGraph() - Method in class mgui.models.networks.AbstractNetwork
 
getGraph() - Method in class mgui.models.networks.AbstractNetworkModel
 
getGraph() - Method in class mgui.neuro.networks.AbstractNeuralNet
Constructs and returns a directed graph from the model components and their connections.
getGraph() - Method in class mgui.neuro.networks.CorticalNetwork
 
getGraph(int) - Method in class mgui.io.domestic.graphs.GraphOutputOptions
 
getGraph(int) - Method in class mgui.io.domestic.shapes.Graph3DOutputOptions
 
getGraph(String) - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout
 
getGraph(String) - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
Returns the graph for the given layer.
getGraphEdgeInstance(Attributes) - Static method in class mgui.io.domestic.graphs.xml.GraphXMLFunctions
Returns a new instance of AbstractGraphEdge, from the given SAX attributes.
getGraphic() - Method in class mgui.interfaces.graphics.GraphicEvent
 
getGraphicsWindows() - Static method in class mgui.interfaces.InterfaceEnvironment
Deprecated. 
getGraphInstance(Attributes) - Static method in class mgui.io.domestic.graphs.xml.GraphXMLFunctions
Returns a new instance of InterfaceAbstractGraph, from the given SAX attributes.
getGraphLayoutInstance() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
 
getGraphLayoutInstance() - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
 
getGraphNode() - Method in class mgui.interfaces.InterfaceWorkspace
 
getGraphNodeInstance(Attributes) - Static method in class mgui.io.domestic.graphs.xml.GraphXMLFunctions
Returns a new instance of AbstractGraphNode, from the given SAX attributes.
getGraphs() - Method in class mgui.interfaces.InterfaceWorkspace
 
getGreen() - Method in class mgui.util.Colour
 
getGreen() - Method in class mgui.util.Colour1f
 
getGreen() - Method in class mgui.util.Colour2f
 
getGreen() - Method in class mgui.util.Colour3f
 
getGreen() - Method in class mgui.util.Colour4f
 
getGreen(int) - Method in class mgui.image.util.WindowedColourModel
 
getGreen(Object) - Method in class mgui.image.util.WindowedColourModel
 
getGreenIndex() - Method in class mgui.image.util.WindowedColourModel
 
getGreyScale() - Static method in class mgui.interfaces.maps.ContinuousColourMap
 
getGrid() - Method in class mgui.interfaces.shapes.Volume3DInt
Returns the Grid3D associated with this volume.
getGridBasisTransform() - Method in class mgui.geometry.Grid3D
Finds transform using the origin (center point of first voxel), rather than the base point.
getGridCoordinate(Point3f) - Method in class mgui.geometry.Grid3D
Determines the grid coordinate of point p, expressed in world coordinates.
getGridFromSpecs() - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
 
getGroomedPolygon(Polygon2DInt, float, boolean, float, boolean, float) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
 
getGzTempFile(String) - Method in class mgui.io.standard.nifti.Nifti1Dataset
 
getHasAlpha() - Method in class mgui.image.util.WindowedColourModel
 
getHasAlpha() - Method in class mgui.interfaces.plots.mgui.MatrixImagePlot
Query the current alpha state
getHeader() - Method in class mgui.io.foreign.caret.CaretMetricLoader
 
getHeader() - Method in class mgui.io.foreign.caret.CaretPaintLoader
 
getHeaderFilename() - Method in class mgui.io.standard.nifti.Nifti1Dataset
Get the filename for the dataset header file
getHeight() - Method in class mgui.geometry.Rect2D
Returns the width of this rectangle, which is a distance along the edge perpendicular to rotation.
getHeight() - Method in class mgui.geometry.Rect3D
 
getHeight() - Method in class mgui.interfaces.layouts.CategoryLayout
 
getHeight() - Method in class mgui.interfaces.layouts.LayoutItem
Returns the height of this item, in document units.
getHelpParameter() - Method in class mgui.pipelines.PipelineProcess
Gets the parameter which is used to show a help message for this process.
getHighlightCurrent2D() - Method in class mgui.interfaces.shapes.SectionSet2DInt
 
getHighLimit() - Method in class mgui.models.dynamic.functions.HardLimitFunction
 
getHistogram(ArrayList<MguiNumber>, int) - Static method in class mgui.stats.StatFunctions
Constructs a histogram from the list d, comprised of bins bins.
getHistogram(ArrayList<MguiNumber>, int, double, double) - Static method in class mgui.stats.StatFunctions
Constructs a histogram from the list d, comprised of bins bins.
getHistogram(ArrayList<MguiNumber>, int, double, double, boolean) - Static method in class mgui.stats.StatFunctions
Constructs a histogram from the list d, comprised of bins bins.
getHistogram(Volume3DInt, int) - Static method in class mgui.geometry.volume.VolumeFunctions
Returns a histogram for the current column of volume.
getHistogram(Volume3DInt, int, int, double, double) - Static method in class mgui.geometry.volume.VolumeFunctions
Returns a histogram for the current column of volume.
getHistogram(Volume3DInt, String, int, int, double, double) - Static method in class mgui.geometry.volume.VolumeFunctions
Returns a histogram for the vertex column column of volume.
getHistogramBlocking(Volume3DInt, int, int, double, double) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
Produces a histogram for the currently selected column of volume.
getHolmBonferroniCorrected(ArrayList<MguiNumber>) - Static method in class mgui.stats.StatFunctions
Returns p-values corrected for family-wise error, using the Holm-Bonferroni method.
getI_delta() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getIcon() - Static method in class mgui.datasources.DataSource
 
getIcon() - Static method in class mgui.datasources.DataTable
 
getIcon() - Static method in class mgui.datasources.LinkedDataStream
 
getIcon() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getIcon() - Static method in class mgui.interfaces.shapes.VertexDataColumn
 
getIcon() - Method in class mgui.pipelines.PipelineFork
 
getIcon() - Static method in class mgui.pipelines.PipelineProcess
 
getIcon(String) - Static method in class mgui.interfaces.projects.ProjectInstance
 
getIconSize() - Method in class mgui.interfaces.gui.InterfaceComboBox
 
getIconTypes() - Static method in class mgui.interfaces.projects.ProjectInstance
 
getId() - Method in class mgui.io.foreign.vol.VolFileLoader
Returns the ID string for the volume file
getID() - Method in class mgui.interfaces.shapes.InterfaceShape
 
getID() - Method in interface mgui.models.dynamic.DynamicModelComponent
 
getID() - Method in class mgui.neuro.components.AbstractNeuroComponent
 
getID() - Method in class mgui.util.IDFactory
 
getImage() - Method in class mgui.interfaces.attributes.AttributeDialogBox
 
getImage() - Method in class mgui.interfaces.frames.SessionFrame
 
getImage() - Method in class mgui.interfaces.shapes.Image2DInt
 
getImage() - Method in class mgui.interfaces.startup.InitFrame
 
getImageComponent() - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
 
getImageDataType() - Method in class mgui.io.standard.imaging.ImageFileLoader
 
getImageHeight() - Method in class mgui.io.standard.imaging.ImageFileLoader
 
getImageWidth() - Method in class mgui.io.standard.imaging.ImageFileLoader
 
getIncludeFields() - Method in class mgui.io.domestic.datasources.ImportDataTableOptions
Returns a list of include values; i.e., whether to include the corresponding field in the import.
getIndex() - Method in class mgui.interfaces.shapes.queries.QueryShapeVertex
 
getIndex() - Method in class mgui.interfaces.shapes.util.ShapeVertexObject
 
getIndex() - Method in interface mgui.models.dynamic.DynamicModelEnvironmentSensor
 
getIndex() - Method in interface mgui.models.dynamic.DynamicModelOutputEvent
 
getIndex() - Method in class mgui.models.environments.AbstractEnvironmentDataSource
 
getIndex() - Method in class mgui.models.updaters.PulseTrainUpdater.CurrentPulse
 
getIndex() - Method in class mgui.morph.sections.AttributeNode2D
 
getIndex() - Method in class mgui.neuro.components.cortical.AbstractCorticalInput
 
getIndex() - Method in class mgui.neuro.components.cortical.AbstractCorticalOutput
 
getIndex() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalOutput
 
getIndex() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalOutputEvent
 
getIndex() - Method in class mgui.neuro.components.simple.SimpleMotorNeuron
 
getIndex() - Method in class mgui.neuro.components.simple.SimpleMotorNeuronEvent
 
getIndex() - Method in class mgui.neuro.components.simple.SimpleSensoryNeuron
 
getIndex() - Method in class mgui.neuro.updaters.PulseTrainUpdater.CurrentPulse
 
getIndex(String) - Method in class mgui.datasources.DataTable
 
getIndexAsVoxel(int) - Method in class mgui.geometry.Grid3D
Returns a voxel as an integer array of the form {s, t, r}, from the absolute index index.
getIndexes() - Method in class mgui.datasources.DataTable
 
getIndexMap() - Method in class mgui.interfaces.maps.DiscreteColourMap
Returns a mapping from the index values of this discrete colour map to the byte map indices return by DiscreteColourMap.getDiscreteMap(int,int,boolean).
getIndexOf(InterfaceShape) - Method in class mgui.interfaces.shapes.SectionSet3DInt
Returns the index of section_set in this set.
getIndexOf(InterfaceShape) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
Returns the index of shape in this set.
getIndexOf(InterfaceShape) - Method in interface mgui.interfaces.shapes.ShapeSet
Returns the index of shape in this set.
getIndexOf(InterfaceShape) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
Returns the index of shape in this set.
getIndexOf(InterfaceShape) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
Returns the index of shape in this set.
getIndexOfChild(Object, Object) - Method in class mgui.interfaces.trees.AbstractTreeTableModel
 
getIndices() - Method in class mgui.interfaces.maps.DiscreteColourMap
 
getIndices() - Method in class mgui.interfaces.maps.NameMap
 
getInheritedAttribute(String) - Method in class mgui.interfaces.shapes.InterfaceShape
Returns the (possibly inherited) named attribute.
getInheritedAttributes() - Method in class mgui.interfaces.shapes.InterfaceShape
Returns an AttributeList object reflecting the current attributes for this shape, whether local or inherited (i.e., overridden by this shape's parent).
getInheritedAttributeValue(String) - Method in class mgui.interfaces.shapes.InterfaceShape
Returns the (possibly inherited) value of the named attribute.
getInheritingAttribute(Attribute<?>) - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
 
getInheritingAttribute(Attribute<?>) - Method in class mgui.interfaces.shapes.Mesh3DInt
 
getInheritingAttribute(Attribute<?>) - Method in class mgui.interfaces.shapes.Shape3DInt
Returns the 2D attribute inheriting from a 3D attribute.
getInitFile() - Static method in class mgui.interfaces.InterfaceEnvironment
 
getInitSectionSet() - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getInitSectionSet() - Method in class mgui.morph.sections.MorphSections3DInt
 
getInput() - Method in class mgui.neuro.components.cortical.AbstractCorticalInput
 
getInput() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalInputEvent
 
getInput() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
 
getInputArgs(String[], String) - Method in class mgui.pipelines.JavaProcess
 
getInputArgs(String[], String) - Method in class mgui.pipelines.NativeProcess
 
getInputArgs(String[], String) - Method in class mgui.pipelines.PipelineProcess
Alters an argument array to set an input file for this process, and returns the result.
getInputDataSource() - Method in interface mgui.models.dynamic.DynamicModelEnvironment
 
getInputDataSource() - Method in class mgui.models.environments.SimpleEnvironment
 
getInputFile() - Method in class mgui.pipelines.PipelineProcessInstance
Returns the path of the input file associated with this process.
getInputFunction() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
 
getInputNames() - Method in interface mgui.models.dynamic.DynamicModelEnvironment
 
getInputNames() - Method in class mgui.models.environments.SimpleEnvironment
 
getInputParameter() - Method in class mgui.pipelines.PipelineProcess
Gets the parameter which is used to determine the input file for this process.
getInputShapeSet2D(InputStream) - Method in class mgui.io.standard.xml.svg.SVGFileInterface
 
getInputState() - Method in interface mgui.models.dynamic.DynamicModelEnvironment
 
getInputState() - Method in class mgui.models.environments.SimpleEnvironment
 
getInputState() - Method in class mgui.models.environments.SimpleEnvironmentEvent
 
getInputState(int) - Method in interface mgui.models.dynamic.DynamicModelEnvironment
 
getInputState(int) - Method in class mgui.models.environments.SimpleEnvironment
 
getInputStreams() - Method in class mgui.interfaces.plots.InterfacePlot
 
getInputString() - Method in class mgui.pipelines.PipelineProcessInstance
Returns the path of the input file associated with this process.
getInstance() - Static method in class mgui.interfaces.graphs.InterfaceGraphDisplayTitle
 
getInstance() - Static method in class mgui.interfaces.tables.InterfaceDataTableTitle
 
getInstance() - Method in class mgui.pipelines.PipelineProcessInstance
 
getInstance() - Method in class mgui.pipelines.TaskParameter
 
getInstance(int) - Method in class mgui.interfaces.projects.InterfaceProject
 
getInstance(int) - Method in class mgui.pipelines.PipelineProcess
 
getInstance(Class<?>, double) - Static method in class mgui.numbers.NumberFunctions
Returns an instance of an MguiNumber of the specified class and value.
getInstance(String) - Method in class mgui.interfaces.graphics.InterfaceGraphicPanel
 
getInstance(String) - Method in class mgui.interfaces.projects.InterfaceProject
 
getInstance(String, double) - Static method in class mgui.numbers.NumberFunctions
Returns an instance of an MguiNumber of the specified type and value
getInstance(DataSource, String, String, boolean, String, boolean) - Static method in class mgui.datasources.LinkedDataStream
Returns an instance of LinkedDataStream of the correct generic type, based on the data type of the linked field.
getInstance(DataType, double) - Static method in class mgui.numbers.NumberFunctions
Returns an instance of an MguiNumber of the specified type and value
getInstance(InterfaceGraphic) - Static method in class mgui.interfaces.graphs.InterfaceGraphDisplayTitle
 
getInstance(InterfaceGraphic) - Static method in class mgui.interfaces.tables.InterfaceDataTableTitle
 
getInstanceDir() - Method in class mgui.interfaces.projects.InterfaceProject
 
getInstanceForValue(Object, int) - Static method in class mgui.datasources.DataTypes
Converts a value from a String to an instance of the specified type.
getInstanceIcon() - Static method in class mgui.interfaces.projects.ProjectInstance
 
getInstanceNames() - Method in class mgui.interfaces.projects.InterfaceProject
 
getInstancePrefix() - Method in class mgui.interfaces.projects.InterfaceProject
 
getInstances() - Method in class mgui.interfaces.projects.InterfaceProject
Returns a (copied) array of the instances in this project
getInstanceSuffix() - Method in class mgui.interfaces.projects.InterfaceProject
 
getInstanceTimer() - Method in class mgui.command.CommandInterpreter
 
getInt() - Method in class mgui.numbers.MguiInteger
 
getInt() - Method in class mgui.numbers.MguiShort
 
getIntCornerPoints(Polygon2DInt, double, double) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
 
getIntegerFrequencies(ArrayList<MguiNumber>) - Static method in class mgui.stats.StatFunctions
Computes the frequency of each unique integer in the list.
getIntensity() - Method in class mgui.util.Colour
 
getIntensity() - Method in class mgui.util.Colour1f
 
getIntensity() - Method in class mgui.util.Colour2f
 
getIntensity() - Method in class mgui.util.Colour4f
 
getIntercept() - Method in class mgui.image.util.WindowedColourModel
 
getInterfaceCanvas3D() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getInterfaceFile() - Method in class mgui.interfaces.gui.FileButton
 
getInterfaceGraphicInstance(String) - Static method in class mgui.interfaces.InterfaceEnvironment
Creates an instance of the specified graphic panel.
getInterfaceGraphicNames() - Static method in class mgui.interfaces.InterfaceEnvironment
Returns a list of all InterfaceGraphic classes currently loaded in this environment.
getInterfaceObjectList(String) - Method in interface mgui.interfaces.Environment
Returns a named list of interface objects, probably belonging to a particular container and having the same type (although this is not necessarily true).
getInterfaceObjectList(String) - Method in class mgui.interfaces.InterfaceEnvironment
Returns a named list of interface objects, probably belonging to a particular container and having the same type (although this is not necessarily true).
getInterfacePanelInstance(String) - Static method in class mgui.interfaces.InterfaceEnvironment
Creates an instance of the specified interface panel.
getInterfacePanelNames() - Static method in class mgui.interfaces.InterfaceEnvironment
Returns a list of all InterfacePanel classes currently loaded in this environment.
getInterfacePanels() - Method in class mgui.interfaces.InterfaceWorkspace
 
getInterfacePlotInstance(String) - Static method in class mgui.interfaces.InterfaceEnvironment
Creates an instance of the specified plot panel.
getInterfacePlotNames() - Static method in class mgui.interfaces.InterfaceEnvironment
Returns a list of all InterfacePlot classes currently loaded in this environment.
getInterpolatedValue(double) - Method in class mgui.geometry.neuro.mesh.SampleRay
 
getInterpolatedValueAtPoint(String, Point3f) - Method in class mgui.interfaces.shapes.Volume3DInt
Returns a value which is interpolated from the voxel enclosing p and its nearest neighbours.
getInterpolatedValueAtPoint(String, Point3f, int) - Method in class mgui.interfaces.shapes.Volume3DInt
Returns a value which is interpolated from the voxel enclosing p and its nearest neighbours.
getInterpolatedValueAtPoint(Point3f) - Method in class mgui.interfaces.shapes.Volume3DInt
Returns a value which is interpolated from the voxel enclosing p and its nearest neighbours.
getInterpolatedValueAtPoint(Point3f, int) - Method in class mgui.interfaces.shapes.Volume3DInt
Returns a value which is interpolated from the voxel enclosing p and its nearest neighbours.
getInterpolation(MguiNumber, MguiNumber, MguiNumber) - Method in class mgui.interfaces.maps.ContinuousColourMap
 
getIntersectedGraph(InterfaceAbstractGraph, HashMap<AbstractGraphNode, Integer>, Plane3D, float, float) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
Returns a Graph2DInt object derived from the plane and 3D graph.
getIntersectedGraph(InterfaceAbstractGraph, HashMap<AbstractGraphNode, Integer>, Plane3D, float, float, Matrix4d) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
Returns a Graph2DInt object derived from the plane and 3D graph.
getIntersectingFaces(Mesh3D, Mesh3D, float) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns a list of face indices indicating which faces intersect between mesh1 and mesh2.
getIntersectingFaces(Mesh3D, Mesh3D, float, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns two lists of face indices indicating which faces intersect between mesh1 and mesh2.
getIntersectingFacesBlocking(Mesh3D, Mesh3D, float, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns two lists of face indices indicating which faces intersect between mesh1 and mesh2.
getIntersection(VertexSelection) - Method in class mgui.interfaces.shapes.mesh.VertexSelection
Returns a new selection which is the intersection of this object and selection.
getIntersectionCompositeImage(Volume3DInt, Plane3D, boolean) - Static method in class mgui.geometry.volume.VolumeFunctions
Returns an Volume2DInt object representing the intersection of the given 3D composite volume with plane.
getIntersectionEdge(Triangle3D, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Returns the edge of intersection for triangle tri with plane p.
getIntersectionEdge(Triangle3D, Plane3D, Point2f[]) - Static method in class mgui.geometry.util.GeometryFunctions
Sets the edge of intersection for triangle tri with plane p.
getIntersectionEdgeRatio(Point3d, Point3d, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Determines the ratio along the line segment pt1-pt2 at which it intersects plane.
getIntersectionEdgeRatio(Point3f, Point3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Determines the ratio along the line segment pt1-pt2 at which it intersects plane.
getIntersectionEdgeRatio(Point3f, Vector3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
 
getIntersectionImage(Volume3DInt, Plane3D, boolean) - Static method in class mgui.geometry.volume.VolumeFunctions
Returns an Volume2DInt object representing the intersection of the given 3D volume with plane.
getIntersectionImage(Volume3DInt, Plane3D, boolean, Matrix4d) - Static method in class mgui.geometry.volume.VolumeFunctions
Returns an Volume2DInt object representing the intersection of the given 3D volume with plane.
getIntersectionLine(Plane3D, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Determines the line of intersection between two planes, and returns the result in the 2D coordinate system of plane2.
getIntersectionMesh(Mesh3D, Plane3D) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
Returns a Mesh2DInt object representing the intersection of the given 3D mesh with plane p.
getIntersectionMesh(Mesh3D, Plane3D, ArrayList<MguiNumber>, ColourMap) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
Returns a Mesh2DInt object representing the intersection of the given 3D mesh with plane p.
getIntersectionPoint(LineSegment2D, LineSegment2D) - Static method in class mgui.geometry.util.GeometryFunctions
 
getIntersectionPoint(LineSegment2D, LineSegment2D, boolean, boolean) - Static method in class mgui.geometry.util.GeometryFunctions
Returns the intersection point between two lines or line segments.
getIntersectionPoint(Mesh3D, Point3f, Vector3f) - Static method in class mgui.geometry.mesh.MeshFunctions
Finds the point from the first face in the nodes list which intersects the line segment defined by p and v.
getIntersectionPoint(Point3d, Point3d, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Determine the point at which the line segment described by p1 and p2 intersects plane.
getIntersectionPoint(Point3d, Vector3d, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Determine the point at which the line segment described by pt and v intersects plane p.
getIntersectionPoint(Point3f, Point3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Determine the point at which the line segment described by p1 and p2 intersects plane.
getIntersectionPoint(Point3f, Vector3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Determine the point at which the line segment described by pt and v intersects plane p.
getIntersectionPoint3D(Point3d, Point3d, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Returns point at which the line segment pt1-pt2 intersects plane.
getIntersectionPoint3D(Point3f, Point3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Returns point at which the line segment pt1-pt2 intersects plane.
getIntersectionPoint3D(Point3f, Vector3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Returns point at which the line segment defined by pt1 and v intersects plane.
getIntersectionPoint3D(Point3f, Vector3f, Triangle3D) - Static method in class mgui.geometry.util.GeometryFunctions
Determines the point at which the line segment defined by pt and v intersects triangle tri.
getIntersectionPoints(Triangle3D, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Determines the points at which tri intersects plane.
getIntersectionPoints(Triangle3D, Plane3D, boolean) - Static method in class mgui.geometry.util.GeometryFunctions
Determines the points at which tri intersects plane.
getIntersectionPointSet(PointSet3D, Plane3D, float, float, HashMap<String, ArrayList<MguiNumber>>, ColourMap) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
Returns a PointSet2DInt object representing the points within spacing of the plane plane.
getIntersectionPolygon(Box3D, Plane3D) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
Returns a 2D polygon in section coordinates representing the intersection of a Box3D object with the plane.
getIntersectionPolygon2(Box3D, Plane3D) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
Returns a 2D polygon in section coordinates representing the intersection of a Box3D object with the plane.
getIntersectionSegment(Triangle3D, Triangle3D) - Static method in class mgui.geometry.util.GeometryFunctions
Determines the line segment defining the seam of where tri1 and tri2 intersect.
getIntersectionSegment(Vector2D, Rect2D) - Static method in class mgui.geometry.util.GeometryFunctions
Calculates a line segment where vector crosses rect.
getIntersectionSegments(Mesh3D, Mesh3D, InterfaceProgressBar) - Static method in class mgui.geometry.mesh.MeshFunctions
Return a set of line segments which represent the intersection of one mesh with another.
getIntersectionVector(Vector3DInt, Plane3D, float, float) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
Returns a Vector2DInt object which is the projection of vector onto plane, if and only if some part of vector is within the distance boundary specified by above_dist and below_dist.
getIntersectionVector(Vector3DInt, Plane3D, float, float, Matrix4d) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
Returns a Vector2DInt object which is the projection of vector onto plane, if and only if some part of vector is within the distance boundary specified by above_dist and below_dist.
getIntMaskedByValue(Volume3DInt, double) - Static method in class mgui.geometry.volume.VolumeFunctions
Returns an integer mask of grid, where a voxel has value = 1, when grid(i,j,k,v) == comp_value (within tolerance), and 0 otherwise.
getIntMaskedByValue(Volume3DInt, double, boolean) - Static method in class mgui.geometry.volume.VolumeFunctions
Returns an integer mask of grid, where a voxel has value = 1, when grid(i,j,k,v) == comp_value (within tolerance), and 0 otherwise.
getIntParameter(String, int) - Method in class au.edu.unsw.cse.Applet3d
 
getIntVectorParameter(String) - Method in class au.edu.unsw.cse.Applet3d
 
getInverseMappedValue(double) - Method in class mgui.image.util.WindowedColourModel
Maps a value according to the inverse of the linear window model:
getInvertClip() - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getInvertedVolume(Volume3DInt) - Static method in class mgui.geometry.volume.VolumeFunctions
Returns a Grid3D object whose data is the inverse of grid.
getInvertedVolume(Volume3DInt, String) - Static method in class mgui.geometry.volume.VolumeFunctions
Returns a Grid3D object whose data is the inverse of grid.
getInvertedVolume(Volume3DInt, String, ProgressUpdater) - Static method in class mgui.geometry.volume.VolumeFunctions
Returns a Grid3D object whose data is the inverse of grid.
getIO() - Method in class mgui.interfaces.io.InterfaceIOType
 
getIOInstance() - Method in class mgui.interfaces.io.InterfaceIOType
Returns a new instance of this type.
getIOType() - Method in class mgui.io.FileLoader
 
getIOType() - Method in class mgui.io.FileWriter
 
getIOType() - Method in interface mgui.io.InterfaceIO
Returns the registered IO type for this object, if one exists
getIOType(String) - Static method in class mgui.interfaces.InterfaceEnvironment
Returns a the IO types associated with name
getIOTypeForInstance(InterfaceIO) - Static method in class mgui.interfaces.InterfaceEnvironment
Return the I/O type associated with the specific instance of InterfaceIO.
getIOTypes() - Static method in class mgui.interfaces.InterfaceEnvironment
Returns a list of the IO types loaded at init
getIOTypesForClass(Class<?>) - Static method in class mgui.interfaces.InterfaceEnvironment
Return all I/O types which are assignable from clazz.
getIsCached() - Method in class mgui.interfaces.datasources.DataTableModel
 
getIsCached() - Method in class mgui.interfaces.tables.InterfaceDataTable
 
getIsEnabled() - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
 
getIsInternalConcavePoly(Polygon2D, Point2f) - Static method in class mgui.geometry.util.GeometryFunctions
 
getIsMajor() - Method in class mgui.interfaces.graphics.Graphic2DGrid
 
getIsosurfaceFromVolume(Volume3DInt) - Method in class mgui.geometry.volume.VolumeEngine
Creates an isosurface at a specified isovalue in volume.
getIsosurfaceFromVolume(Volume3DInt, String, double) - Static method in class mgui.geometry.mesh.MeshFunctions
Constructs an isosurface from volume; i.e., computes a mesh which represents the location where values in the 3D scalar field in volume are equal to iso_level.
getIsVisible() - Method in class mgui.interfaces.graphics.Graphic2DGrid
 
getItem(int) - Method in class mgui.interfaces.maps.ValueMap
 
getIterations() - Method in class mgui.models.dynamic.DynamicModelEngine
 
getIterator() - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getIterator() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
 
getIterator() - Method in class mgui.morph.sections.MappedPolygon2DPath
 
getIterator() - Method in class mgui.morph.sections.MorphSections3DInt
 
getJaggedEdgeNodes(Mesh3D, ArrayList<MguiNumber>, int, int, boolean) - Static method in class mgui.geometry.mesh.MeshFunctions
Detects nodes corresponding to "jagged" edges; a jagged edge node is defined as one which has only max_nbrs neighbours with the same value as itself, and at least min_nbrs neighbours which are the same value.
getJamaMatrix() - Method in class mgui.interfaces.variables.MatrixInt
Returns the Jama matrix for this object.
getJamaMatrixAsMatrix4d(Matrix) - Static method in class mgui.geometry.util.GeometryFunctions
 
getJungVertices() - Method in class mgui.geometry.Graph2D
 
getJungVertices() - Method in class mgui.geometry.Graph3D
 
getK() - Method in class mgui.models.dynamic.functions.SigmoidFunction
 
getKeyFields() - Method in class mgui.datasources.DataTable
Returns a list of this table's key fields.
getKeyInputVal() - Method in class mgui.interfaces.tools.ToolInputEvent
 
getKeys() - Method in class mgui.interfaces.attributes.AttributeList
 
getKeysFromMetaData(String) - Method in class mgui.datasources.DataSource
Returns a set of primary keys for the specified table
getLabel() - Method in class mgui.datasources.DataField
 
getLabel() - Method in class mgui.graphs.networks.AbstractNetworkGraphConnection
 
getLabel() - Method in class mgui.interfaces.graphs.AbstractGraphEdge
 
getLabel() - Method in class mgui.interfaces.graphs.AbstractGraphNode
 
getLabel() - Method in class mgui.interfaces.graphs.DefaultGraphEdge
 
getLabel() - Method in class mgui.interfaces.io.InterfaceIOType
 
getLabel() - Method in class mgui.interfaces.plots.sgt.SgtAxis
 
getLabel() - Method in class mgui.io.foreign.vol.Attr
 
getLabel() - Method in class mgui.neuro.graphs.CorticalNetworkGraphNode
 
getLabel() - Method in class mgui.neuro.graphs.NeuralNetConnection
 
getLabelAppearance(Integer) - Method in class mgui.interfaces.shapes.PointSet3DInt
 
getLabelAppearance(AbstractGraphNode) - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
 
getLabelColour() - Method in class mgui.interfaces.graphics.Graphic2DGrid
 
getLabelColour() - Method in class mgui.interfaces.graphics.util.Axes3D
 
getLabelColour() - Method in class mgui.interfaces.shapes.InterfaceShape
 
getLabelColour() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getLabelColour() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getLabelEdges() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
 
getLabelFont() - Method in class mgui.interfaces.graphics.Graphic2DGrid
 
getLabelFont() - Method in class mgui.interfaces.graphics.util.Axes3D
 
getLabelFont() - Method in class mgui.interfaces.shapes.InterfaceShape
 
getLabelFont() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getLabelFont() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getLabelNodes() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
 
getLabelOffset() - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
 
getLabelPosition() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
 
getLabelPosition() - Method in class mgui.interfaces.shapes.PointSet2DInt
 
getLabelPosition(String) - Static method in class mgui.interfaces.graphs.util.GraphFunctions
Returns the label position associated with the String pos.
getLabelPositions() - Static method in class mgui.interfaces.graphs.util.GraphFunctions
Get a list of possible node label positions, as Strings.
getLabelScale() - Method in class mgui.interfaces.shapes.InterfaceShape
 
getLabelScale() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getLabelScale() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getLabelSize() - Method in class mgui.interfaces.graphics.Graphic2DGrid
 
getLabelX() - Method in class mgui.interfaces.plots.osp.InterfacePlotOsp
 
getLabelX() - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout
Returns the label for the X axis.
getLabelY() - Method in class mgui.interfaces.plots.osp.InterfacePlotOsp
 
getLabelY() - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout
Returns the label for the Y axis.
getLaplacian(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
Computes the discrete Laplacian for each vertex in mesh.
getLargestContiguousRois(Mesh3D, ArrayList<MguiNumber>, int) - Static method in class mgui.geometry.mesh.MeshFunctions
Retains only the largest contiguous ROIs in the given set of values; all others are set to out_value.
getLastAdded() - Method in class mgui.interfaces.plots.sgt.InterfacePlotSgt
 
getLastAdded() - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getLastAdded() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
Not implemented.
getLastAdded() - Method in interface mgui.interfaces.shapes.ShapeSet
 
getLastAdded() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
 
getLastAdded() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
 
getLastAddedPanel() - Method in class mgui.interfaces.InterfaceDisplayPanel
Retrieves the last added panel
getLastAddedPanel() - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
Retrieves the last added panel
getLastColumnAdded() - Method in class mgui.interfaces.shapes.InterfaceShape
VERTEX DATA STUFF
getLastColumnChanged() - Method in class mgui.interfaces.shapes.InterfaceShape
 
getLastColumnRemoved() - Method in class mgui.interfaces.shapes.InterfaceShape
 
getLastFrame() - Method in interface au.edu.unsw.cse.Object3d
 
getLastFrame() - Method in class au.edu.unsw.cse.Object3dAdaptor
 
getLastFrame() - Method in class au.edu.unsw.cse.Point3dObject3d
 
getLastFrame() - Method in class au.edu.unsw.cse.View3d
get the last frame no
getLastFrame() - Method in class au.edu.unsw.cse.VRMLState
 
getLastInsert() - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getLastInsert() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
Not implemented.
getLastInsert() - Method in interface mgui.interfaces.shapes.ShapeSet
 
getLastInsert() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
 
getLastInsert() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
 
getLastInserted() - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getLastInserted() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
Not implemented.
getLastInserted() - Method in interface mgui.interfaces.shapes.ShapeSet
 
getLastInserted() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
 
getLastInserted() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
 
getLastMap() - Method in class mgui.morph.sections.MappedPolygon2DPath
 
getLastModified() - Method in class mgui.interfaces.plots.sgt.InterfacePlotSgt
 
getLastModified() - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getLastModified() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
Not implemented.
getLastModified() - Method in interface mgui.interfaces.shapes.ShapeSet
 
getLastModified() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
 
getLastModified() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
 
getLastMoved() - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getLastMoved() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
Not implemented.
getLastMoved() - Method in interface mgui.interfaces.shapes.ShapeSet
 
getLastMoved() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
 
getLastMoved() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
 
getLastPipeline() - Method in class mgui.io.domestic.pipelines.PipelineXMLHandler
Returns the last pipeline loaded from XML.
getLastPolygon() - Method in class mgui.morph.sections.MappedPolygon2DPath
 
getLastQueriedObject() - Method in class mgui.interfaces.shapes.queries.InterfaceShapeQuery
 
getLastRemoved() - Method in class mgui.interfaces.plots.sgt.InterfacePlotSgt
 
getLastRemoved() - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getLastRemoved() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
Not implemented.
getLastRemoved() - Method in interface mgui.interfaces.shapes.ShapeSet
 
getLastRemoved() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
 
getLastRemoved() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
 
getLastRemovedPanel() - Method in class mgui.interfaces.InterfaceDisplayPanel
Retrieves the last removed panel
getLastRemovedPanel() - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
Retrieves the last removed panel
getLastResult() - Method in class mgui.interfaces.queries.InterfaceQuery
Returns the last query result.
getLastSection() - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getLastSection() - Method in class mgui.interfaces.shapes.util.SectionSetIterator
 
getLastSection() - Method in class mgui.morph.sections.MorphSections3DInt
 
getLastSection() - Method in class mgui.morph.sections.util.MorphSectionSetIterator
 
getLastSectionAdded() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
 
getLastSectionRemoved() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
 
getLastVertex() - Method in class mgui.geometry.Polygon2D
 
getLayer(String) - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
Returns the layer associated with the specified name.
getLayerNames() - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
 
getLayout() - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
 
getLayout3DTypes() - Static method in class mgui.interfaces.graphs.util.GraphFunctions
Returns list of available 3D graph layouts.
getLayout3DTypes2() - Static method in class mgui.interfaces.graphs.util.GraphFunctions
Returns list of available 3D graph layouts.
getLayoutAlignmentX(Container) - Method in class mgui.interfaces.layouts.LineLayout
 
getLayoutAlignmentY(Container) - Method in class mgui.interfaces.layouts.LineLayout
 
getLayoutClass() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
 
getLayoutClass() - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
 
getLayoutPanel() - Method in class mgui.interfaces.maps.ColourMap
 
getLayoutPanel() - Method in class mgui.interfaces.maps.DiscreteColourMap
 
getLayoutTypes() - Static method in class mgui.interfaces.graphs.util.GraphFunctions
Returns list of available graph layouts.
getLayoutTypes2() - Static method in class mgui.interfaces.graphs.util.GraphFunctions
Returns list of available graph layouts.
getLeafIcon() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
Returns the icon used to represent leaf nodes.
getLegalName(String) - Method in class mgui.interfaces.shapes.InterfaceShape
 
getLength() - Method in class mgui.datasources.DataField
 
getLength() - Method in class mgui.geometry.LineSegment2D
 
getLength() - Method in class mgui.geometry.Vector3D
 
getLength() - Method in class mgui.neuro.components.compartments.CompartmentalDendrite
 
getLensPoint() - Method in class mgui.interfaces.maps.Camera3D
 
getLevels() - Method in class mgui.interfaces.projects.ProjectInstanceGroup
 
getLibrary() - Method in class mgui.pipelines.PipelineProcess
 
getLimits() - Method in class mgui.image.util.WindowedColourModel
Returns the limits of this windowed model
getLineColour() - Method in class mgui.interfaces.shapes.InterfaceShape
Returns the colour of this shape's lines/edges.
getLineColour() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getLineColour() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getLineCount() - Method in class mgui.interfaces.attributes.video.AttributeObjectVideoTaskDialogPanel
 
getLineCount() - Method in class mgui.interfaces.graphics.video.RotateView3DTaskDialogPanel
 
getLineCount() - Method in class mgui.interfaces.graphics.video.SetView3DTaskDialogPanel
 
getLineCount() - Method in class mgui.interfaces.graphics.video.VideoTaskDialogPanel
Returns the number of lines in this panel
getLineCount() - Method in class mgui.interfaces.shapes.video.ChangeSectionVideoTaskDialogPanel
 
getLineHeight() - Static method in class mgui.interfaces.InterfaceEnvironment
Specifies the line width for panels using LineLayouts or CategoryLayouts.
getLineOfSight() - Method in class mgui.interfaces.maps.Camera3D
 
getLineStyle() - Method in class mgui.interfaces.shapes.InterfaceShape
Returns the line/edge style for this shape.
getLineStyle() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getLineStyle() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getLinkedData(String) - Method in class mgui.interfaces.shapes.VertexDataColumn
Returns a LinkedDataStream specified by name
getLinkedDataNames() - Method in class mgui.interfaces.shapes.VertexDataColumn
Returns a list of names for all data linked to this column
getLinkedVertexData(String) - Method in class mgui.interfaces.shapes.InterfaceShape
Retrieves the vertex-wise data associated with a data-linked column.
getLinkedVertexData(String) - Method in class mgui.interfaces.shapes.Shape2DInt
 
getLinkedVertexDatum(String, int) - Method in class mgui.interfaces.shapes.InterfaceShape
Returns the value at the given vertex, for the given linked column.
getLinkedVertexDatum(String, int) - Method in class mgui.interfaces.shapes.Shape2DInt
 
getLinkField() - Method in class mgui.datasources.LinkedDataStream
 
getLinkTable() - Method in class mgui.datasources.LinkedDataStream
 
getList() - Method in class mgui.interfaces.attributes.AttributeSelection
 
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class mgui.geometry.util.NodeShapeComboRenderer
 
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class mgui.interfaces.gui.InterfaceComboBoxRenderer
 
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class mgui.interfaces.shapes.util.StrokeSample
Returns a list cell renderer for the stroke, so the sample can be displayed in a list or combo.
getListWidth() - Method in class mgui.interfaces.gui.VariableComboBox
 
getLoader() - Method in class mgui.io.domestic.shapes.VolumeInputOptions
 
getLoaderComplement() - Method in class mgui.io.domestic.shapes.Mesh3DWriter
 
getLoaderComplement() - Method in class mgui.io.FileWriter
Returns the InterfaceIOType of a FileLoader which is the complement of this writer; i.e., reads what this writer writes with identical encoding.
getLoaderComplement() - Method in class mgui.io.foreign.minc.MincSurfaceWriter
 
getLoaderComplement() - Method in class mgui.io.standard.gifti.GiftiSurfaceWriter
 
getLoaderComplement() - Method in class mgui.io.standard.nifti.NiftiVolumeWriter
 
getLoaderInstance(String) - Static method in class mgui.io.domestic.shapes.xml.ShapeXMLFunctions
Attempts to return an instance of the loader from the qualified reference loader.
getLoaderIOType() - Method in class mgui.interfaces.projects.ProjectDataItem
 
getLoaderOptions() - Method in class mgui.datasources.DataSourceDriver
 
getLoaderOptions() - Method in interface mgui.interfaces.io.PersistentObject
Returns the options used to last load this object, if available
getLoaderOptions() - Method in class mgui.interfaces.shapes.InterfaceShape
 
getLocalAttributes() - Method in class mgui.interfaces.InterfacePanel
 
getLocale() - Static method in class mgui.interfaces.InterfaceEnvironment
Gets the locale.
getLocale() - Method in class mgui.interfaces.shapes.ShapeModel3D
 
getLocalName() - Method in class mgui.datasources.DataConnection
 
getLocalName() - Method in class mgui.datasources.DataField
 
getLocalName() - Method in class mgui.datasources.DataQuery
 
getLocalName() - Method in class mgui.datasources.DataSource
 
getLocalName() - Method in class mgui.datasources.DataTable
 
getLocalName() - Method in class mgui.datasources.DataTableSet
 
getLocalName() - Method in class mgui.geometry.Box3D
 
getLocalName() - Method in class mgui.geometry.Graph3D
 
getLocalName() - Method in class mgui.geometry.Grid3D
 
getLocalName() - Method in class mgui.geometry.Mesh3D
 
getLocalName() - Method in class mgui.geometry.Plane3D
 
getLocalName() - Method in class mgui.geometry.Shape2D
 
getLocalName() - Method in class mgui.geometry.Shape3D
 
getLocalName() - Method in class mgui.graphs.networks.AbstractNetworkGraphConnection
 
getLocalName() - Method in class mgui.image.util.WindowedColourModel
 
getLocalName() - Method in class mgui.interfaces.attributes.Attribute
 
getLocalName() - Method in class mgui.interfaces.attributes.AttributeList
 
getLocalName() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
 
getLocalName() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
 
getLocalName() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getLocalName() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
 
getLocalName() - Method in class mgui.interfaces.graphics.video.Video
 
getLocalName() - Method in class mgui.interfaces.graphics.video.VideoTask
 
getLocalName() - Method in class mgui.interfaces.graphics.View3D
 
getLocalName() - Method in class mgui.interfaces.graphs.AbstractGraphEdge
 
getLocalName() - Method in class mgui.interfaces.graphs.AbstractGraphNode
 
getLocalName() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
 
getLocalName() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
 
getLocalName() - Method in class mgui.interfaces.InterfaceDisplayPanel
 
getLocalName() - Method in class mgui.interfaces.InterfaceSplitPanel
 
getLocalName() - Method in class mgui.interfaces.InterfaceWorkspace
 
getLocalName() - Method in class mgui.interfaces.layouts.InterfaceLayoutWindow
 
getLocalName() - Method in class mgui.interfaces.layouts.LayoutItem
 
getLocalName() - Method in class mgui.interfaces.maps.Camera3D
 
getLocalName() - Method in class mgui.interfaces.maps.ColourMap
 
getLocalName() - Method in class mgui.interfaces.maps.Map2D
 
getLocalName() - Method in class mgui.interfaces.maps.Map3D
 
getLocalName() - Method in class mgui.interfaces.maps.NameMap
 
getLocalName() - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
 
getLocalName() - Method in class mgui.interfaces.plots.InterfacePlotDisplay
 
getLocalName() - Method in class mgui.interfaces.projects.InterfaceProject
 
getLocalName() - Method in class mgui.interfaces.projects.ProjectDirectory
 
getLocalName() - Method in class mgui.interfaces.projects.ProjectInstance
 
getLocalName() - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
 
getLocalName() - Method in class mgui.interfaces.shapes.Mesh3DInt
 
getLocalName() - Method in class mgui.interfaces.shapes.PointSet3DInt
 
getLocalName() - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getLocalName() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
 
getLocalName() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getLocalName() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getLocalName() - Method in class mgui.interfaces.shapes.ShapeModel3D
 
getLocalName() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
 
getLocalName() - Method in class mgui.interfaces.shapes.VertexDataColumn
 
getLocalName() - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
 
getLocalName() - Method in class mgui.interfaces.tables.InterfaceDataTable
 
getLocalName() - Method in class mgui.interfaces.variables.VariableInt
 
getLocalName() - Method in interface mgui.interfaces.xml.XMLObject
Returns the local name associated with this XML object.
getLocalName() - Method in class mgui.io.InterfaceIOOptions
 
getLocalName() - Method in class mgui.neuro.graphs.CorticalNetworkGraphNode
 
getLocalName() - Method in class mgui.neuro.graphs.NeuralNetGraph
 
getLocalName() - Method in class mgui.neuro.imaging.camino.CaminoProject
 
getLocalName() - Method in class mgui.numbers.MguiBoolean
 
getLocalName() - Method in class mgui.numbers.MguiDouble
 
getLocalName() - Method in class mgui.numbers.MguiFloat
 
getLocalName() - Method in class mgui.numbers.MguiInteger
 
getLocalName() - Method in class mgui.numbers.MguiLong
 
getLocalName() - Method in class mgui.numbers.MguiShort
 
getLocalName() - Method in class mgui.pipelines.PipelineProcess
 
getLocalName() - Method in class mgui.pipelines.PipelineProcessInstance
 
getLocalName() - Method in class mgui.pipelines.PipelineTask
 
getLocalName() - Method in class mgui.util.Colour
 
getLocalName() - Method in class mgui.util.Colour3f
 
getLocalName() - Method in class mgui.util.Colour4f
 
getLocation() - Method in class mgui.interfaces.graphs.AbstractGraphNode
Returns the static location of this node.
getLocation() - Method in class mgui.interfaces.layouts.LayoutItem
Returns the upper-left corner of this item, in document space.
getLocation() - Method in class mgui.neuro.components.cortical.AbstractCorticalRegion
 
getLogFile() - Static method in class mgui.interfaces.InterfaceEnvironment
 
getLogger() - Method in class mgui.pipelines.PipelineProcess
 
getLogger() - Method in class mgui.pipelines.PipelineProcessInstance
 
getLoggingTarget() - Static method in class mgui.interfaces.InterfaceEnvironment
 
getLoggingTimestamp() - Static method in class mgui.interfaces.InterfaceEnvironment
 
getLoggingType() - Static method in class mgui.interfaces.InterfaceEnvironment
 
getLogin() - Method in class mgui.datasources.DataConnection
 
getLogin() - Method in class mgui.datasources.DataSourceDriver
 
getLong() - Method in class mgui.numbers.MguiLong
 
getLookAndFeel() - Static method in class mgui.interfaces.InterfaceEnvironment
 
getLowIsTransparent() - Method in class mgui.image.util.WindowedColourModel
 
getLowLimit() - Method in class mgui.models.dynamic.functions.HardLimitFunction
 
getM() - Method in class mgui.interfaces.variables.MatrixInt
Returns the row dimension, M
getMainAxis(SgtPlotFunctions.AxisType) - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout
 
getMainAxis(SgtPlotFunctions.AxisType) - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
Returns the main axis of the given SgtPlotFunctions.AxisType.
getMainClass() - Method in class mgui.pipelines.JavaProcess
 
getMap() - Method in class mgui.interfaces.graphics.InterfaceGraphic
 
getMap() - Method in class mgui.interfaces.graphics.util.DrawingEngine
Returns the current Map2D for this drawing engine.
getMap() - Method in class mgui.io.domestic.maps.ColourMapXMLHandler
 
getMap() - Method in class mgui.io.domestic.maps.NameMapXMLHandler
 
getMap3D() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getMapBounds() - Method in class mgui.interfaces.maps.Map2D
 
getMapCenterPt() - Method in class mgui.interfaces.maps.Map2D
 
getMapDist(double) - Method in class mgui.interfaces.maps.Map2D
 
getMapDist(int) - Method in class mgui.interfaces.graphics.util.DrawingEngine
 
getMapDist(int) - Method in class mgui.interfaces.maps.Map2D
 
getMapIdxToParent() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getMapKeys() - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
 
getMapMax() - Method in class mgui.interfaces.shapes.Volume3DInt
 
getMapMin() - Method in class mgui.interfaces.shapes.Volume3DInt
 
getMappedPolygons(SectionSet3DInt, double) - Method in class mgui.morph.sections.MorphEngine
 
getMappedPolygons(SectionSet3DInt, double, boolean) - Method in class mgui.morph.sections.MorphEngine
Maps the set of polygons in polyset between each neighbouring section.
getMappedSQLTypeDBMStoJDBC(int, String) - Static method in class mgui.datasources.DataTypes
Return data type mapped to particular driver (for non-standard types) from DBMS type to JDBC type
getMappedSQLTypeJDBCtoDBMS(int, String) - Static method in class mgui.datasources.DataTypes
 
getMappedValue(double) - Method in class mgui.image.util.WindowedColourModel
Maps a value according to the linear window model:
getMappedValueByte(Volume3DInt, int, int, int) - Static method in class mgui.geometry.volume.VolumeFunctions
Returns the value of voxel [i,j,k] mapped with its colour model, as a byte.
getMappedValueDouble(Volume3DInt, int, int, int) - Static method in class mgui.geometry.volume.VolumeFunctions
 
getMappingAt(int) - Method in class mgui.interfaces.neuro.InterfaceNeuroAtlas
 
getMappings() - Method in class mgui.interfaces.neuro.InterfaceNeuroAtlas
 
getMapPoint(Point) - Method in class mgui.interfaces.maps.Map2D
Get the map coordinate of the screen point
getMask(String) - Method in class mgui.interfaces.shapes.Volume3DInt
 
getMask(Grid3D, VolumeMaskOptions_old) - Static method in class mgui.geometry.volume.VolumeFunctions
Applies a voxel mask to an ImageComponent3D object, using the parameters in params.
getMaskedCompositeImages(Volume3DInt) - Static method in class mgui.geometry.volume.VolumeFunctions
Returns a set of composite images, comprised of all data columns specified for the composite, with alpha values and ordering as specified in the Volume3DInt object.
getMaskedCompositeRSliceImage(Volume3DInt, int, boolean[][][]) - Static method in class mgui.geometry.volume.VolumeFunctions
Returns a composite image from an R-slice plane, volume, and set of colour models and composite alphas.
getMaskedImages(Volume3DInt) - Static method in class mgui.geometry.volume.VolumeFunctions
Produces a stack of R-planar images from volume, based upon the current data column and its associated colour map.
getMaskedImages(Volume3DInt, String) - Static method in class mgui.geometry.volume.VolumeFunctions
Produces a stack of R-planar images from volume, based upon the data in column and its associated colour map.
getMaskNames() - Method in class mgui.interfaces.shapes.Volume3DInt
Returns an ordered list of mask names for this volume.
getMaskNormalizedValues(InterfaceShape, String, String, String) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
Normalize values in source_column by the mean of values in normalize_column which lie in the mask mask_column.
getMaskNormalizedValues(InterfaceShape, String, String, String, String) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
Normalize values in source_column by the statistic of values in normalize_column which lie in the mask mask_column.
getMasks() - Method in class mgui.interfaces.shapes.Volume3DInt
 
getMatrices() - Method in class mgui.io.domestic.variables.MatrixOutOptions
 
getMatrix(String) - Method in class mgui.interfaces.plots.MatrixPlotDataSource
Return the matrix corresponding to channel.
getMatrixFromPoint3d(Point3d) - Static method in class mgui.util.MathFunctions
 
getMatrixProduct(Vector3f, Matrix4f) - Static method in class mgui.geometry.util.GeometryFunctions
Multiplies v by M, using only the first 3 x 3 subset of M.
getMax() - Method in class mgui.interfaces.graphics.Graphic2DGrid
 
getMax() - Method in class mgui.interfaces.maps.DiscreteColourMap
Returns the maximum value in this map's indices
getMaxDisplayVertices() - Static method in class mgui.interfaces.InterfaceEnvironment
Specifies the maximal number of vertices to display on a shape for the current system.
getMaxEnergy() - Method in class mgui.geometry.mesh.EnergySphere
 
getMaxForColumn(Matrix, int) - Static method in class mgui.geometry.util.MatrixFunctions
Returns the maximum of col.
getMaxForRow(Matrix, int) - Static method in class mgui.geometry.util.MatrixFunctions
Returns the maximum of row.
getMaximum() - Method in class mgui.interfaces.gui.AbstractProgressUpdater
 
getMaximum() - Method in class mgui.interfaces.gui.InterfaceProgressBar
 
getMaximum() - Method in interface mgui.interfaces.ProgressUpdater
 
getMaximumEdgeLength(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
Searches all edges and returns the maximum length
getMaxLength() - Method in class mgui.morph.sections.RadialRepresentation
 
getMaxPt() - Method in class mgui.geometry.Box3D
 
getMaxPt(Shape3D) - Static method in class mgui.geometry.util.GeometryFunctions
Determines a maximum point max_x, max_y, max_z from shape.
getMaxPt(Point3f, Point3f) - Static method in class mgui.geometry.util.GeometryFunctions
Determines a maximum point max_x, max_y, max_z from two points.
getMaxValue() - Method in class mgui.interfaces.shapes.dynamic.Volume4DInt
 
getMaxVoxelMidPt() - Method in class mgui.geometry.Grid3D
 
getMaxX() - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout
Returns the end of the X axis, in physical units (see JPane for details).
getMaxY() - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout
Returns the end of the Y axis, in physical units (see JPane for details).
getMean() - Method in interface mgui.models.dynamic.stats.DynamicModelStatistics
 
getMean() - Method in class mgui.neuro.stats.SimpleStatistics
 
getMeanCurvature(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
 
getMeanForColumn(Matrix, int) - Static method in class mgui.geometry.util.MatrixFunctions
Returns the mean of col.
getMeanForRow(Matrix, int) - Static method in class mgui.geometry.util.MatrixFunctions
Returns the mean of row.
getMeanSphereMesh(Point3f, float, int, float, long) - Static method in class mgui.geometry.mesh.MeshFunctions
 
getMedian(double[]) - Static method in class mgui.stats.StatFunctions
Returns the median of a list of values.
getMedian(ArrayList<MguiNumber>) - Static method in class mgui.stats.StatFunctions
Returns the median of a list of values.
getMember(int) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
 
getMember(int) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
Returns the ith member of this set
getMember(int) - Method in class mgui.interfaces.shapes.VolumeSet3DInt
Gets the i'th member in this set
getMemberCount() - Method in class mgui.interfaces.shapes.VolumeSet3DInt
 
getMembers() - Method in class mgui.interfaces.shapes.SectionSet3DInt
Returns a copy of this set's member list.
getMembers() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
Returns a copy of this set's member list.
getMembers() - Method in interface mgui.interfaces.shapes.ShapeSet
 
getMembers() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
Returns a copy of this set's member list.
getMembers() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
Returns a copy of this set's member list.
getMembers() - Method in class mgui.interfaces.shapes.VolumeSet3DInt
Gets a list of this set's members
getMembers(boolean) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
Returns a copy of this set's member list.
getMergedPolygons(ArrayList<Polygon2D>) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
 
getMergedPolygonsbak(ArrayList<Polygon2D>) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
 
getMesh() - Method in class mgui.interfaces.shapes.Mesh3DInt
 
getMesh() - Method in class mgui.io.domestic.shapes.MeshOptionsDialogBox
 
getMesh() - Method in class mgui.io.domestic.shapes.SurfaceOutputDialogBox
 
getMesh() - Method in class mgui.io.foreign.caret.CaretMetricOptionsDialog
 
getMesh() - Method in class mgui.io.foreign.caret.CaretPaintOptionsDialog
Deprecated.
 
getMesh() - Method in class mgui.io.standard.gifti.xml.GiftiXMLHandler
Returns the loaded surface.
getMeshExpandedAlongNormals(Mesh3D, float) - Static method in class mgui.geometry.mesh.MeshFunctions
Expands mesh along its vertex normals by a distance of expansion.
getMeshParts(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
 
getMeshParts(Mesh3D, HashMap<String, ArrayList<MguiNumber>>, ArrayList<HashMap<String, ArrayList<MguiNumber>>>) - Static method in class mgui.geometry.mesh.MeshFunctions
 
getMeshParts(Mesh3D, HashMap<String, ArrayList<MguiNumber>>, ArrayList<HashMap<String, ArrayList<MguiNumber>>>, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns a set of non-contiguous meshes from mesh.
getMeshParts(Mesh3DInt, ShapeSet3DInt) - Method in class mgui.geometry.mesh.MeshEngine
Creates new mesh objects as a set of non-contiguous meshes from mesh_int, and adds these to shape_set.
getMeshParts(Mesh3DInt, ShapeSet3DInt, boolean, ProgressUpdater) - Method in class mgui.geometry.mesh.MeshEngine
Creates new mesh objects as a set of non-contiguous meshes from mesh_int, and adds these to shape_set.
getMethods(String) - Method in class mgui.geometry.mesh.MeshEngine
 
getMethods(String) - Method in class mgui.geometry.neuro.mesh.NeuroMeshEngine
 
getMethods(String) - Method in class mgui.geometry.volume.VolumeEngine
 
getMethods(String) - Method in class mgui.interfaces.graphics.util.DrawingEngine
 
getMethods(String) - Method in class mgui.interfaces.shapes.util.ShapeEngine
 
getMethods(String) - Method in interface mgui.interfaces.util.Engine
Returns a list of methods implementing a particular operation.
getMidLimit() - Method in class mgui.models.dynamic.functions.HardLimitFunction
 
getMidPoint(Point2f, Point2f, double) - Static method in class mgui.geometry.util.GeometryFunctions
Determines the mid-point of the line segment defined by pt1 and pt2, at the position pos, which must range from 0.0 (i.e., at pt1 to 1.0 (i.e., at pt2).
getMidPt(Point3f, Point3f) - Static method in class mgui.geometry.util.GeometryFunctions
Computes the mid-point of the line segment defined by p1 and p2.
getMin() - Method in class mgui.interfaces.graphics.Graphic2DGrid
 
getMin() - Method in class mgui.interfaces.maps.DiscreteColourMap
Returns the minimum value in this map's indices
getMinDistance() - Method in class mgui.interfaces.maps.Camera3D
 
getMinForColumn(Matrix, int) - Static method in class mgui.geometry.util.MatrixFunctions
Returns the minimum of col.
getMinForRow(Matrix, int) - Static method in class mgui.geometry.util.MatrixFunctions
Returns the minimum of row.
getMinimalAngle(double) - Static method in class mgui.geometry.util.GeometryFunctions
 
getMinimum() - Method in class mgui.interfaces.gui.AbstractProgressUpdater
 
getMinimum() - Method in class mgui.interfaces.gui.InterfaceProgressBar
 
getMinimum() - Method in interface mgui.interfaces.ProgressUpdater
 
getMinimumEdgeLength(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
Searches all edges and returns the minimum length
getMinPt() - Method in class mgui.geometry.Box3D
 
getMinPt(Shape3D) - Static method in class mgui.geometry.util.GeometryFunctions
Determines a minimum point min_x, min_y, min_z from shape.
getMinPt(Point3f, Point3f) - Static method in class mgui.geometry.util.GeometryFunctions
Determines a minimum point min_x, min_y, min_z from two points.
getMinScreenScale() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getMinScreenScaleHeight() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getMinScreenScaleWidth() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getMinValue() - Method in class mgui.interfaces.shapes.dynamic.Volume4DInt
 
getMinVoxelMidPt() - Method in class mgui.geometry.Grid3D
 
getMinX() - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout
Returns the start of the X axis, in physical units relative to its size (see JPane for details).
getMinY() - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout
Returns the start of the Y axis, in physical units (see JPane for details).
getMode() - Method in class mgui.interfaces.tools.shapes.ToolSelectShape2D
 
getMode() - Method in class mgui.interfaces.tools.shapes.ToolSelectShape3D
 
getMode() - Method in class mgui.io.standard.xml.svg.Instruction
 
getMode() - Method in class mgui.models.environments.SimpleEnvironment
 
getMode(double[]) - Static method in class mgui.stats.StatFunctions
Returns the mode of a list of values, where equality is determined as abs(values[i] - values[j]) < default_precision.
getMode(double[], double) - Static method in class mgui.stats.StatFunctions
Returns the mode of a list of values, where equality is determined as abs(values[i] - values[j]) < precision.
getMode(ArrayList<MguiNumber>) - Static method in class mgui.stats.StatFunctions
Returns the mode of a list of values, where equality is determined as abs(values[i] - values[j]) < default_precision.
getModel() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getModel() - Method in class mgui.interfaces.shapes.InterfaceShape
 
getModel() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
 
getModel() - Method in class mgui.interfaces.shapes.ShapeModel3D
 
getModel() - Method in interface mgui.interfaces.shapes.ShapeSet
 
getModel() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
 
getModel() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
 
getModel() - Method in class mgui.interfaces.tables.InterfaceDataTable
 
getModel() - Method in class mgui.interfaces.trees.InterfaceTreePanel
 
getModel() - Method in class mgui.io.domestic.shapes.ShapeModel3DOutputOptions
 
getModel() - Method in class mgui.models.dynamic.DynamicModelEngine
 
getModelClip() - Method in class mgui.interfaces.shapes.util.ClipPlane
Plane for model clip defined as 4-vector, with elements A, B, C, D obtained from the plane equation Ax + By + Cz + D <= 0.
getModelClip(Plane3D, float, float, boolean) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
Returns the up and down clipping planes for this plane
getModelSet() - Method in class mgui.interfaces.shapes.ShapeModel3D
 
getModifiedAttribute() - Method in class mgui.interfaces.shapes.InterfaceShape
 
getModifiedAttribute() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getModifiedAttribute() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getMorphMesh(SectionSet3DInt, double) - Method in class mgui.morph.sections.MorphEngine
Given a set of sections, map nodes using radial rep and then triangulate between sections based upon this mapping, and each polygon's direction (CW or CCW)
getMorphSections(SectionSet3DInt, double) - Method in class mgui.morph.sections.MorphEngine
 
getMouseAdapter() - Method in class mgui.interfaces.tools.graphs.ToolGraphAdapter
 
getMouseAdapter() - Method in class mgui.interfaces.tools.ToolInputAdapter
 
getMouseAdapter() - Method in class mgui.interfaces.tools.ToolInputMouseAdapter
 
getMouseCoords(Point) - Method in class mgui.interfaces.graphics.InterfaceGraphic
Return the mapped coordinates, depending on the InterfaceGraphic window, for the given screen coordinates.
getMouseCoords(Point) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
 
getMouseListener() - Method in class mgui.interfaces.graphics.InterfaceGraphic2DTextBox
 
getMouseListener() - Method in class mgui.interfaces.graphics.InterfaceGraphicTextBox
 
getMouseListener() - Method in interface mgui.interfaces.InterfaceMouseListener
 
getMouseListener() - Method in class mgui.interfaces.InterfaceSelectionPanel
 
getMouseListener() - Method in class mgui.interfaces.queries.InterfaceQueryPanel
 
getMouseListener() - Method in class mgui.interfaces.shapes.selection.InterfaceSelectionSet
 
getMouseListener() - Method in class mgui.interfaces.shapes.Text2DIntMouseCoords
 
getMouseWheelListener() - Method in class mgui.interfaces.graphics.InterfaceGraphic2DTextBox
 
getMouseWheelListener() - Method in class mgui.interfaces.graphics.InterfaceGraphicTextBox
 
getMouseWheelListener() - Method in interface mgui.interfaces.InterfaceMouseListener
 
getMouseWheelListener() - Method in class mgui.interfaces.InterfaceSelectionPanel
 
getMouseWheelListener() - Method in class mgui.interfaces.queries.InterfaceQueryPanel
 
getMouseWheelListener() - Method in class mgui.interfaces.shapes.selection.InterfaceSelectionSet
 
getMouseWheelListener() - Method in class mgui.interfaces.shapes.Text2DIntMouseCoords
 
getMultiple(double, double) - Static method in class mgui.numbers.NumberFunctions
 
getMultiPolygonMapping(ArrayList<Polygon2D>, ArrayList<Polygon2D>) - Method in class mgui.morph.sections.MorphEngine
 
getN() - Method in class mgui.interfaces.variables.MatrixInt
Returns the column dimension, N
getN() - Method in class mgui.interfaces.variables.StringVectorInt
 
getN() - Method in class mgui.interfaces.variables.VectorInt
 
getN() - Method in interface mgui.models.dynamic.stats.DynamicModelStatistics
 
getN() - Method in class mgui.neuro.components.compartments.CompartmentalComponent
 
getN() - Method in class mgui.neuro.stats.SimpleStatistics
 
getName() - Method in class mgui.datasources.DataConnection
 
getName() - Method in class mgui.datasources.DataField
 
getName() - Method in class mgui.datasources.DataQuery
 
getName() - Method in class mgui.datasources.DataSource
 
getName() - Method in class mgui.datasources.DataSourceDriver
 
getName() - Method in class mgui.geometry.mesh.MeshEngine
 
getName() - Method in class mgui.geometry.neuro.mesh.NeuroMeshEngine
 
getName() - Method in class mgui.geometry.util.NodeShape
 
getName() - Method in class mgui.geometry.volume.VolumeEngine
 
getName() - Method in class mgui.interfaces.AbstractInterfaceObject
 
getName() - Method in class mgui.interfaces.attributes.Attribute
 
getName() - Method in class mgui.interfaces.attributes.video.AttributeObjectVideoTask
 
getName() - Method in class mgui.interfaces.graphics.Graphic2DGrid
 
getName() - Method in class mgui.interfaces.graphics.InterfaceGraphic
 
getName() - Method in class mgui.interfaces.graphics.util.Axes3D
 
getName() - Method in class mgui.interfaces.graphics.util.DrawingEngine
 
getName() - Method in class mgui.interfaces.graphics.video.RotateView3DTask
 
getName() - Method in class mgui.interfaces.graphics.video.SetView3DTask
 
getName() - Method in class mgui.interfaces.graphics.video.Video
 
getName() - Method in class mgui.interfaces.graphics.video.VideoTask
 
getName() - Method in class mgui.interfaces.graphics.View3D
 
getName() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
 
getName() - Method in class mgui.interfaces.InterfaceOptions
 
getName() - Method in class mgui.interfaces.io.InterfaceFile
 
getName() - Method in class mgui.interfaces.io.InterfaceIOType
 
getName() - Method in class mgui.interfaces.layouts.LayoutDocument
 
getName() - Method in class mgui.interfaces.layouts.LayoutItem
 
getName() - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
 
getName() - Method in class mgui.interfaces.maps.Camera3D
 
getName() - Method in class mgui.interfaces.maps.ColourMap
 
getName() - Method in interface mgui.interfaces.math.VariableObject
 
getName() - Method in interface mgui.interfaces.NamedObject
Gets the name for this object.
getName() - Method in class mgui.interfaces.neuro.InterfaceNeuroAtlas
 
getName() - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
 
getName() - Method in class mgui.interfaces.plots.mgui.PlotMap2D
 
getName() - Method in class mgui.interfaces.plots.osp.InterfaceStripChart.Variable
 
getName() - Method in class mgui.interfaces.projects.InterfaceProject
 
getName() - Method in class mgui.interfaces.projects.ProjectDataItem
 
getName() - Method in class mgui.interfaces.projects.ProjectInstance
 
getName() - Method in class mgui.interfaces.queries.InterfaceQuery
 
getName() - Method in class mgui.interfaces.shapes.InterfaceShape
 
getName() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
 
getName() - Method in class mgui.interfaces.shapes.util.ShapeEngine
 
getName() - Method in class mgui.interfaces.shapes.VertexDataColumn
 
getName() - Method in class mgui.interfaces.shapes.video.ChangeSectionVideoTask
 
getName() - Method in class mgui.interfaces.tables.InterfaceTableModel
 
getName() - Method in class mgui.interfaces.tools.dialogs.DialogTool
 
getName() - Method in class mgui.interfaces.tools.graphics.Tool2D
 
getName() - Method in class mgui.interfaces.tools.graphics.Tool3D
 
getName() - Method in class mgui.interfaces.tools.graphs.ToolGraph
 
getName() - Method in interface mgui.interfaces.tools.Tool
 
getName() - Method in class mgui.interfaces.variables.VariableInt
 
getName() - Method in class mgui.io.foreign.vol.Attr
 
getName() - Method in interface mgui.models.dynamic.DynamicModelEnvironmentSensor
 
getName() - Method in class mgui.models.environments.AbstractEnvironmentDataSource
 
getName() - Method in class mgui.neuro.components.AbstractNeuroComponent
 
getName() - Method in class mgui.neuro.components.cortical.AbstractCorticalRegion
 
getName() - Method in class mgui.neuro.graphs.CorticalNetworkGraph
 
getName() - Method in class mgui.neuro.graphs.NeuralNetGraph
 
getName() - Method in class mgui.neuro.networks.AbstractNeuralNet
 
getName() - Method in class mgui.neuro.networks.CorticalNetwork
 
getName() - Method in class mgui.pipelines.PipelineProcess
 
getName() - Method in class mgui.pipelines.PipelineProcessInstance
 
getName() - Method in class mgui.pipelines.PipelineTask
 
getName() - Method in class mgui.pipelines.TaskParameterInstance
 
getName() - Method in class mgui.resources.icons.NamedIcon
 
getName() - Method in class mgui.util.ScaledUnit
 
getName() - Method in class mgui.util.Unit
 
getNameAt(int) - Method in class mgui.interfaces.neuro.InterfaceNeuroAtlas
 
getNameCount() - Method in class mgui.io.foreign.caret.CaretPaintLoader.Header
 
getNameForInterfaceGraphicClass(Class<? extends InterfaceGraphic>) - Static method in class mgui.interfaces.InterfaceEnvironment
Returns the name corresponding to the given interface graphic class.
getNameMap() - Method in class mgui.interfaces.maps.DiscreteColourMap
 
getNameMap() - Method in class mgui.interfaces.neuro.InterfaceNeuroAtlas
 
getNameMap() - Method in class mgui.interfaces.shapes.InterfaceShape
Returns the name map associated with the current column, or null if there is no column, or no name map associated with it.
getNameMap() - Method in class mgui.interfaces.shapes.VertexDataColumn
Returns the associated name map, or null if none exists.
getNameMap(String) - Static method in class mgui.interfaces.InterfaceEnvironment
Gets the NameMap with the specified name
getNameMap(String) - Method in class mgui.interfaces.shapes.InterfaceShape
Returns the name map associated with column, or null if there is no name map associated with it.
getNameMapNode() - Method in class mgui.interfaces.InterfaceWorkspace
 
getNameMaps() - Method in class mgui.interfaces.InterfaceDisplayPanel
 
getNameMaps() - Static method in class mgui.interfaces.InterfaceEnvironment
Gets a list of loaded name maps.
getNames() - Method in class mgui.interfaces.maps.NameMap
Returns all names in this name map.
getNames() - Method in class mgui.io.domestic.datasources.ImportDataTableOptions
 
getNames() - Method in class mgui.io.domestic.shapes.ShapeDataInputOptions
 
getNearestAxis(Vector3d) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
 
getNearestAxis(Vector3d, boolean) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
 
getNearestNeighbour(Point2f, ArrayList<Point2f>) - Static method in class mgui.geometry.util.GeometryFunctions
Determines the nearest neighbour of p in the list nodes.
getNearestNeighbour(Point3f) - Method in class mgui.geometry.util.K3DBinaryTree
Searches this binary tree for the nearest neighbour
getNearestNeighbour3DBlocking(Shape3DInt, Shape3DInt) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
 
getNearestNeighbours(InterfaceShape, InterfaceShape) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
Returns a list of vertex indices from source which are nearest neighbours of the corresponding vertices of target.
getNearestSample(double) - Method in class mgui.geometry.neuro.mesh.SampleRay
 
getNeighbourhood(int) - Method in class mgui.geometry.mesh.NeighbourhoodMesh
 
getNeighbourhoodPoints(TreeSet<Point3f>, Mesh3D, NeighbourhoodMesh, int, int) - Static method in class mgui.geometry.mesh.MeshFunctions
 
getNeighbourhoodPoints(Mesh3D, NeighbourhoodMesh, int) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns a list of points corresponding to the immediate (1st level) neighbourhood of node node.
getNeighbourhoodPoints(Mesh3D, NeighbourhoodMesh, int, int) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns a list of points corresponding to the n-th level neighbourhood of node node, where n is specified by the parameter levels
getNeighbourhoodRing(int) - Method in class mgui.geometry.mesh.NeighbourhoodMesh
Return neighbourhood as connected cycle, or null if neighbourhood does not form a cycle
getNeighbourhoodSubmesh(Mesh3D, int) - Static method in class mgui.geometry.mesh.MeshFunctions
Gets a submesh from mesh consisting of the neighbourhood of vertex i.
getNeighbouringVoxels(Grid3D, int[], int) - Static method in class mgui.geometry.volume.VolumeFunctions
Returns the indices off all first neighbours of voxel, plus voxel.
getNeighbouringVoxels(Grid3D, Point3f) - Static method in class mgui.geometry.volume.VolumeFunctions
Returns the indices off all first neighbours of the voxel enclosing point, plus that voxel.
getNeighbouringVoxels(Grid3D, Point3f, int) - Static method in class mgui.geometry.volume.VolumeFunctions
Returns the indices off all first neighbours of the voxel enclosing point, plus that voxel.
getNeighbourList() - Method in class mgui.geometry.mesh.Neighbourhood
 
getNeighbours(int) - Method in class mgui.geometry.Grid3D
Returns the immediate neighbours of the voxel at idx.
getNet() - Method in class mgui.interfaces.neuro.NeuralNetEvent
 
getNet() - Method in class mgui.models.networks.NetworkEvent
 
getNewInstance(String) - Method in class mgui.interfaces.queries.InterfaceQuery
Returns a new instance of this class of query.
getNewInstance(String) - Method in class mgui.interfaces.shapes.queries.InterfaceShapeQuery
 
getNewInstance(String) - Method in class mgui.interfaces.shapes.queries.ShapeSummaryQuery
 
getNewPlot() - Method in class mgui.interfaces.plots.NewPlotDialog
 
getNext() - Method in class mgui.morph.sections.MorphNodeMap2D
 
getNextID() - Method in class mgui.interfaces.shapes.ShapeModel3D
 
getNextSection() - Method in class mgui.interfaces.shapes.util.SectionSetIterator
 
getNextSection() - Method in class mgui.morph.sections.util.MorphSectionSetIterator
 
getNextSplitPanel(InterfaceGraphicWindow) - Method in class mgui.interfaces.InterfaceDisplayPanel
Returns a new split panel, determined as the first non-split window encountered, searching through the nested stack of split panels.
getNextSquare(double) - Static method in class mgui.numbers.NumberFunctions
Returns the next highest square number
getNextSubSection() - Method in class mgui.morph.sections.MorphSections3DInt
 
getNextVertex(int) - Method in class mgui.geometry.Polygon2D
 
getNiftiDataType(int) - Static method in class mgui.io.standard.nifti.util.NiftiFunctions
Convert from DataBuffer types to Nifti types.
getNode() - Method in class mgui.interfaces.shapes.ShapeSceneNode
 
getNode() - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
Sets and returns a Java3D node from the given Grid3D and Texture3D
getNode() - Method in class mgui.interfaces.trees.TreeEvent
 
getNode(int) - Method in class mgui.geometry.Mesh3D.MeshFace3D
 
getNode(AbstractCorticalRegion) - Method in class mgui.neuro.graphs.CorticalNetworkGraph
 
getNodeAngles(Polygon2D) - Static method in class mgui.geometry.util.GeometryFunctions
Returns an array of angles made by each node of polygon
getNodeAsSections() - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
Sets and returns a Java3D node from the given Grid3D and Texture3D; node will be a set of 2D planes corresponding the the section sets in the volume's parent set
getNodeAsVolume() - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
Sets and returns a Java3D node from the given Grid3D and Texture3D; node will be a 3D volume texture
getNodeBool(int) - Method in class mgui.interfaces.shapes.BoolPolygon2DInt
 
getNodeBool(int) - Method in class mgui.interfaces.shapes.IntPolygon2DInt
 
getNodeCount() - Method in class mgui.io.foreign.caret.CaretPaintLoader.Header
 
getNodeFactory() - Static method in class mgui.interfaces.graphs.util.GraphFunctions
 
getNodeFactory(Class<T>, String, boolean, boolean) - Static method in class mgui.interfaces.graphs.util.GraphFunctions
 
getNodeIndex(int) - Method in class mgui.morph.sections.RadialRepresentation
Gets the polygon index corresponding to the radius index i
getNodeLabelFont() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
 
getNodeLabelRenderer(Renderer.VertexLabel.Position) - Static method in class mgui.interfaces.graphs.util.GraphFunctions
Returns a node label renderer which can be turned off.
getNodes() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
 
getNodes() - Method in class mgui.interfaces.shapes.NodesUpdater
 
getNodes(boolean) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
Returns a list of all nodes of all members in this set.
getNodesInsideProjectionLimits(ArrayList<Point3f>, Plane3D, float, float) - Static method in class mgui.geometry.util.GeometryFunctions
Determines which points in nodes lie within the projection limits specified by plane, above_limit, and below_limit.
getNodeTangents(ArrayList<MappedPolygon2DPath>, double, double) - Method in class mgui.morph.sections.MorphEngine
Given a list of mapped polygons, assign tangents to nodes based upon the mapping vectors.
getNodeVisibilityPredicate(boolean) - Static method in class mgui.interfaces.graphs.util.GraphFunctions
Returns a predicate object to control the visibility of nodes in a graph.
getNonLinkedDataColumns() - Method in class mgui.interfaces.shapes.InterfaceShape
Returns a list of this shape's data columns, minus the linked columns.
getNonLinkedDataColumns() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getNonzeroAxes() - Method in class mgui.geometry.Box3D
 
getNormal() - Method in class mgui.geometry.Plane3D
Returns the normal vector, as a unit vector, for this plane.
getNormal(Point2d, Point2d, Point2d, boolean) - Static method in class mgui.geometry.util.GeometryFunctions
Determines the vector normal to the 2D curve at point p, where p0 and p1 are the point before and after p, respectively.
getNormal(Point2f, Point2f, Point2f, boolean) - Static method in class mgui.geometry.util.GeometryFunctions
Determines the vector normal to the 2D curve at point p, where p0 and p1 are the point before and after p, respectively.
getNormalAtFace(int) - Method in class mgui.geometry.Mesh3D
 
getNormalized(double) - Method in class mgui.stats.Histogram
 
getNormalizedCurve(ArrayList<Double>) - Static method in class mgui.neuro.stats.SignalProcessing
Normalizes this curve to the max and min of its values.
getNormalizedCurve(ArrayList<Double>, double, double) - Static method in class mgui.neuro.stats.SignalProcessing
Normalizes this curve to max and min.
getNormalizedValues(InterfaceShape, String, double, double, double, double) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
Normalize values in source_column to from the range [source_min, source_max] to the range [target_min, target_max]
getNormals() - Method in class mgui.geometry.Mesh3D
 
getNormals(Polygon2D, boolean) - Static method in class mgui.geometry.util.GeometryFunctions
Returns a list of vectors which are the normals to the nodes of polygon, given a direction of normal, indicated by CW (clockwise if true, counterclockwise if false).
getNow(String) - Static method in class mgui.interfaces.InterfaceEnvironment
 
getNumericFields() - Method in class mgui.datasources.LinkedDataStream
Returns all fields which are numeric.
getNumericValue() - Method in class mgui.datasources.DataField
 
getNumericValue(T, String) - Method in class mgui.datasources.LinkedDataStream
Returns the value for field at record where link field equals key.
getObject() - Method in class mgui.interfaces.queries.QueryResult
Returns the queriable object associated with this result
getObject(int) - Method in class mgui.datasources.DataRecordSet
 
getObjectClass() - Method in class mgui.datasources.DataField
 
getObjectClass() - Method in class mgui.interfaces.attributes.Attribute
Returns the object class for this parameterized Attribute.
getObjectForXML(String, Attributes, String) - Static method in class mgui.interfaces.xml.XMLFunctions
Returns a new instantiated Object corresponding to the "object_class" field of attributes.
getObjectForXMLString(Class<?>, String) - Static method in class mgui.interfaces.xml.XMLFunctions
Attempts to detect the data type of s and return a newly instantiated Object of the correct Class.
getObjectIcon() - Method in class mgui.datasources.DataConnection
 
getObjectIcon() - Method in class mgui.datasources.DataQuery
 
getObjectIcon() - Method in class mgui.datasources.DataSource
 
getObjectIcon() - Method in class mgui.datasources.DataTable
 
getObjectIcon() - Method in class mgui.datasources.DataTableSet
 
getObjectIcon() - Method in class mgui.datasources.LinkedDataStream
 
getObjectIcon() - Method in class mgui.interfaces.attributes.AttributeList
 
getObjectIcon() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
 
getObjectIcon() - Method in class mgui.interfaces.datasources.InterfaceDatasourcePanel
 
getObjectIcon() - Method in class mgui.interfaces.graphics.InterfaceGraphic
 
getObjectIcon() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
 
getObjectIcon() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getObjectIcon() - Method in class mgui.interfaces.graphics.InterfaceGraphicPanel
 
getObjectIcon() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
 
getObjectIcon() - Method in class mgui.interfaces.graphics.util.Axes3D
 
getObjectIcon() - Method in class mgui.interfaces.graphics.View3D
 
getObjectIcon() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
 
getObjectIcon() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
 
getObjectIcon() - Method in class mgui.interfaces.InterfaceDisplayPanel
 
getObjectIcon() - Method in class mgui.interfaces.InterfacePanel
 
getObjectIcon() - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
 
getObjectIcon() - Method in class mgui.interfaces.InterfaceWorkspace.CollectionTreeNode
 
getObjectIcon() - Method in class mgui.interfaces.InterfaceWorkspace
 
getObjectIcon() - Method in class mgui.interfaces.io.InterfaceFilePanel
 
getObjectIcon() - Method in class mgui.interfaces.io.InterfaceIOType
 
getObjectIcon() - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
 
getObjectIcon() - Method in class mgui.interfaces.maps.Camera3D
 
getObjectIcon() - Method in class mgui.interfaces.maps.ContinuousColourMap
 
getObjectIcon() - Method in class mgui.interfaces.maps.DiscreteColourMap
 
getObjectIcon() - Method in class mgui.interfaces.maps.InterfaceMapPanel
 
getObjectIcon() - Method in class mgui.interfaces.maps.NameMap
 
getObjectIcon() - Method in class mgui.interfaces.neuro.InterfaceCorticalThicknessPanel
 
getObjectIcon() - Method in class mgui.interfaces.pipelines.InterfacePipelinesPanel
 
getObjectIcon() - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
 
getObjectIcon() - Method in class mgui.interfaces.plots.InterfacePlot
 
getObjectIcon() - Method in class mgui.interfaces.plots.InterfacePlotDisplay
 
getObjectIcon() - Method in class mgui.interfaces.projects.InterfaceProject
 
getObjectIcon() - Method in class mgui.interfaces.projects.InterfaceProjectPanel
 
getObjectIcon() - Method in class mgui.interfaces.projects.ProjectDataItem
 
getObjectIcon() - Method in class mgui.interfaces.projects.ProjectDirectory
 
getObjectIcon() - Method in class mgui.interfaces.projects.ProjectInstance
 
getObjectIcon() - Method in class mgui.interfaces.queries.InterfaceQuery
 
getObjectIcon() - Method in class mgui.interfaces.queries.InterfaceQueryPanel
 
getObjectIcon() - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
 
getObjectIcon() - Method in class mgui.interfaces.shapes.InterfaceSectionSetPanel
 
getObjectIcon() - Method in class mgui.interfaces.shapes.InterfaceShape
Returns an icon for this shape, if one has been defined.
getObjectIcon() - Method in class mgui.interfaces.shapes.InterfaceShape.VertexDataSet
 
getObjectIcon() - Method in class mgui.interfaces.shapes.InterfaceShapesPanel
 
getObjectIcon() - Method in class mgui.interfaces.shapes.mesh.InterfaceMeshPanel
 
getObjectIcon() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
 
getObjectIcon() - Method in class mgui.interfaces.shapes.ShapeModel3D
 
getObjectIcon() - Method in class mgui.interfaces.shapes.VertexDataColumn
 
getObjectIcon() - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
 
getObjectIcon() - Method in class mgui.interfaces.tables.InterfaceDataTable
 
getObjectIcon() - Method in class mgui.interfaces.tools.dialogs.DialogTool
 
getObjectIcon() - Method in class mgui.interfaces.tools.graphics.Tool2D
 
getObjectIcon() - Method in class mgui.interfaces.tools.graphics.Tool3D
 
getObjectIcon() - Method in class mgui.interfaces.tools.graphs.ToolGraph
 
getObjectIcon() - Method in class mgui.interfaces.tools.InterfaceToolPanel
 
getObjectIcon() - Method in class mgui.interfaces.tools.shapes.util.RulerDialog
 
getObjectIcon() - Method in class mgui.interfaces.trees.InterfaceTreePanel
 
getObjectIcon() - Method in class mgui.interfaces.variables.MatrixInt
 
getObjectIcon() - Method in class mgui.interfaces.variables.StringVectorInt
 
getObjectIcon() - Method in class mgui.interfaces.variables.VariableInt
 
getObjectIcon() - Method in class mgui.interfaces.variables.VectorInt
 
getObjectIcon() - Method in class mgui.io.domestic.graphs.GraphFileLoader
 
getObjectIcon() - Method in class mgui.io.domestic.graphs.GraphFileWriter
 
getObjectIcon() - Method in class mgui.io.domestic.maps.ContinuousColourMapLoader
 
getObjectIcon() - Method in class mgui.io.domestic.maps.ContinuousColourMapWriter
 
getObjectIcon() - Method in class mgui.io.domestic.maps.DiscreteColourMapLoader
 
getObjectIcon() - Method in class mgui.io.domestic.maps.DiscreteColourMapWriter
 
getObjectIcon() - Method in class mgui.io.domestic.maps.NameMapLoader
 
getObjectIcon() - Method in class mgui.io.domestic.maps.NameMapWriter
 
getObjectIcon() - Method in class mgui.io.domestic.shapes.ShapeDataLoader
 
getObjectIcon() - Method in class mgui.io.domestic.shapes.ShapeModel3DLoader
 
getObjectIcon() - Method in class mgui.io.domestic.shapes.ShapeModel3DWriter
 
getObjectIcon() - Method in class mgui.io.domestic.shapes.SurfaceDataFileLoader
 
getObjectIcon() - Method in class mgui.io.domestic.shapes.SurfaceDataFileWriter
 
getObjectIcon() - Method in class mgui.io.domestic.shapes.SurfaceFileLoader
 
getObjectIcon() - Method in class mgui.io.domestic.shapes.SurfaceFileWriter
 
getObjectIcon() - Method in class mgui.io.domestic.shapes.VectorSet3DLoader
 
getObjectIcon() - Method in class mgui.io.domestic.shapes.VolumeFileLoader
 
getObjectIcon() - Method in class mgui.io.domestic.shapes.VolumeFileWriter
 
getObjectIcon() - Method in class mgui.io.domestic.variables.MatrixFileLoader
 
getObjectIcon() - Method in class mgui.io.domestic.variables.MatrixFileWriter
 
getObjectIcon() - Method in class mgui.io.domestic.views.View3DLoader
 
getObjectIcon() - Method in class mgui.io.domestic.views.View3DWriter
 
getObjectIcon() - Method in class mgui.io.FileLoader
 
getObjectIcon() - Method in class mgui.io.FileWriter
 
getObjectIcon() - Method in class mgui.neuro.imaging.camino.CaminoProject
 
getObjectIcon() - Method in class mgui.pipelines.InterfacePipeline
 
getObjectIcon() - Method in class mgui.pipelines.JavaProcess
 
getObjectIcon() - Method in class mgui.pipelines.NativeProcess
 
getObjectIcon() - Method in class mgui.pipelines.PipelineFork
 
getObjectIcon() - Method in class mgui.pipelines.PipelineProcess
 
getObjectIcon() - Method in class mgui.pipelines.PipelineProcessInstance
 
getObjectIcon() - Method in interface mgui.resources.icons.IconObject
Returns the Icon associated with this object.
getObjectIcon() - Method in class mgui.resources.icons.NamedIcon
 
getObjects() - Method in class mgui.interfaces.queries.InterfaceQuery
Returns a list of the objects for which this query has results, in the order they were added.
getObservableDataSource() - Method in interface mgui.models.dynamic.DynamicModelEnvironment
 
getObservableDataSource() - Method in class mgui.models.environments.SimpleEnvironment
 
getObservableNames() - Method in interface mgui.models.dynamic.DynamicModelEnvironment
 
getObservableNames() - Method in class mgui.models.environments.SimpleEnvironment
 
getObservableSize() - Method in interface mgui.models.dynamic.DynamicModelEnvironment
 
getObservableSize() - Method in class mgui.models.environments.SimpleEnvironment
 
getObservableState() - Method in interface mgui.models.dynamic.DynamicModelEnvironment
 
getObservableState() - Method in class mgui.models.environments.SimpleEnvironment
 
getObservableState(int) - Method in interface mgui.models.dynamic.DynamicModelEnvironment
 
getObservableState(int) - Method in class mgui.models.environments.SimpleEnvironment
 
getODESolver() - Method in class mgui.neuro.components.AbstractNeuroComponent
 
getODESolver() - Method in class mgui.neuro.components.compartments.AbstractCompartment
 
getOffset() - Method in class mgui.models.updaters.LinearUpdater
 
getOldPanel() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
 
getOp(int) - Static method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
 
getOpenIcon() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
Returns the icon used to represent non-leaf nodes that are expanded.
getOperations() - Method in class mgui.geometry.mesh.MeshEngine
 
getOperations() - Method in class mgui.geometry.neuro.mesh.NeuroMeshEngine
 
getOperations() - Method in class mgui.geometry.volume.VolumeEngine
 
getOperations() - Method in class mgui.interfaces.graphics.util.DrawingEngine
 
getOperations() - Method in class mgui.interfaces.shapes.util.ShapeEngine
 
getOperations() - Method in interface mgui.interfaces.util.Engine
Returns a list of the operations available for this Engine.
getOppositeEdge(int, MeshEdge) - Method in class mgui.geometry.mesh.MeshTriangle
 
getOppositeFaceIndex(int, int) - Method in class mgui.geometry.mesh.MeshEdgeSet
Get the face index (i.e., in the source mesh) of the triangle opposite to triangle at face_idx, which is joined at edge.
getOppositeNode(int, int) - Method in class mgui.geometry.mesh.MeshEdgeSet
Get the vertex index (i.e., in the source mesh) of the vertex opposite to triangle at tri_index, which is joined at edge.
getOppositeNode(MeshEdge) - Method in class mgui.geometry.mesh.MeshTriangle
 
getOppositeNode(MeshEdge, MeshTriangle) - Method in class mgui.geometry.mesh.MeshEdgeSet
Get the vertex index (i.e., in the source mesh) of the vertex opposite to triangle, which is joined at edge.
getOppositeTri(int, int) - Method in class mgui.geometry.mesh.MeshEdgeSet
Get the triangle opposite to triangle at face_idx, which is joined at edge.
getOppositeTri(MeshEdge, MeshTriangle) - Method in class mgui.geometry.mesh.MeshEdgeSet
Get the triangle opposite to face, which is joined at edge.
getOppositeTriIndex(int, int) - Method in class mgui.geometry.mesh.MeshEdgeSet
Get the triangle index (i.e., in this set) of the triangle opposite to triangle at face_idx, which is joined at edge.
getOppPt() - Method in class mgui.geometry.Box3D
 
getOpString() - Method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
 
getOptimalSubmesh(Mesh3D, ArrayList<MguiInteger>) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns the optimal submesh defined by the connect ring ring.
getOptimizedSphereMesh(Point3f, float, int, double, long, float) - Static method in class mgui.geometry.mesh.MeshFunctions
 
getOptions() - Method in class mgui.interfaces.InterfaceOptionsDialogBox
 
getOptions() - Method in class mgui.interfaces.tools.dialogs.DialogToolDialogBox
 
getOptions() - Method in class mgui.io.domestic.shapes.VolumeInputDialogBox
 
getOptions() - Method in class mgui.io.FileLoader
 
getOptions() - Method in class mgui.io.FileWriter
 
getOptions() - Method in interface mgui.io.InterfaceIO
Gets the InterfaceIOOptions specifying this I/O operation, if options have been set; otherwise returns null.
getOptionsInstance() - Method in class mgui.interfaces.io.InterfaceIOType
Returns an instance of InterfaceIOOptions appropriate for this IO type.
getOptionsInstance() - Method in class mgui.interfaces.plots.InterfacePlot
Returns an instance of InterfacePlotOptions with which to specify this plot object.
getOptionsInstance() - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlot
 
getOptionsInstance() - Method in class mgui.interfaces.plots.sgt.SgtScatterplot
 
getOrderedA() - Method in class mgui.morph.sections.MappedPolygon2D
 
getOrderedB() - Method in class mgui.morph.sections.MappedPolygon2D
 
getOrderedGroup() - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
 
getOrigin() - Method in class mgui.geometry.Grid3D
Returns the origin of this grid.
getOrigin() - Method in class mgui.geometry.Plane3D
 
getOrigin() - Method in class mgui.geometry.Rect3D
 
getOrigin() - Method in class mgui.interfaces.plots.sgt.SgtAxis
Returns the origin of this axis, which depends on its range and its position.
getOrigin() - Method in interface mgui.interfaces.shapes.volume.VolumeMetadata
The geometric origin of the volume as a Point3f.
getOrigin() - Method in class mgui.io.foreign.fsl.FSLVolumeMetadata
 
getOrigin() - Method in class mgui.io.foreign.wunil.WunilDataset
 
getOrigin() - Method in class mgui.io.standard.nifti.NiftiMetadata
 
getOrthogonalPlane(Plane3D, LineSegment3D) - Method in class mgui.geometry.util.GeometryFunctions
Returns a plane which is orthogonal to plane, with a y-axis defined by line.
getOrthogonalRegressionPlane(ArrayList<Point3f>) - Static method in class mgui.geometry.util.GeometryFunctions
Calculates and returns the orthogonal distance regression ("best-fit") plane for a set of points in R3.
getOsType() - Static method in class mgui.interfaces.InterfaceEnvironment
 
getOtherWindow(InterfaceGraphicWindow) - Method in class mgui.interfaces.InterfaceSplitPanel
Returns the window that is not window, if one exists.
getOutput() - Method in interface mgui.models.dynamic.DynamicModelOutputEvent
 
getOutput() - Method in class mgui.neuro.components.cortical.AbstractCorticalRegion
 
getOutput() - Method in class mgui.neuro.components.cortical.functions.BiexponentialFunction
 
getOutput() - Method in class mgui.neuro.components.cortical.functions.CorticalFunction
 
getOutput() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getOutput() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalConnectionEvent
 
getOutput() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalOutput
 
getOutput() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalOutputEvent
 
getOutput() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
 
getOutput() - Method in class mgui.neuro.components.simple.SimpleAxon
 
getOutput() - Method in class mgui.neuro.components.simple.SimpleMotorNeuron
 
getOutput() - Method in class mgui.neuro.components.simple.SimpleMotorNeuronEvent
 
getOutput() - Method in class mgui.neuro.components.simple.SimpleSoma
 
getOutputArgs(String[], String) - Method in class mgui.pipelines.JavaProcess
 
getOutputArgs(String[], String) - Method in class mgui.pipelines.NativeProcess
 
getOutputArgs(String[], String) - Method in class mgui.pipelines.PipelineProcess
Alters an argument array to set an output file for this process, and returns the result.
getOutputDir() - Method in class mgui.io.foreign.caret.CaretSurfaceOutOptions
 
getOutputFile() - Method in class mgui.pipelines.PipelineProcessInstance
Returns the path of the output file associated with this process.
getOutputParameter() - Method in class mgui.pipelines.PipelineProcess
Sets the parameter which is used to determine the output file for this process.
getOutputString() - Method in class mgui.pipelines.PipelineProcessInstance
Returns the path of the output file associated with this process.
getOutputType() - Method in class mgui.io.domestic.datasources.ExportDataTableDialogBox
Returns the current output type.
getOverlayImage(ArrayList<BufferedImage>, WindowedColourModel) - Static method in class mgui.geometry.volume.VolumeFunctions
Compiles an overlay from the list of images by adding them one-by-one starting from the last element (since this will be on the bottom).
getPageCount() - Method in class mgui.interfaces.layouts.LayoutDocument
Returns the number of printable pages in this document.
getPageFormat() - Method in class mgui.interfaces.layouts.LayoutDocument
Returns this document's page format (size and orientation)
getPanel() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
 
getPanel() - Method in class mgui.interfaces.InterfaceSplitPanel
 
getPanelNodes() - Method in class mgui.interfaces.InterfaceDisplayPanel
 
getPanels() - Method in class mgui.interfaces.InterfaceComboPanel
 
getPanels() - Method in class mgui.interfaces.InterfaceDisplayPanel
Deprecated.
Use getWindows()
getPanels() - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
 
getParameter(String) - Method in class au.edu.unsw.cse.Applet3d
 
getParameter(String) - Method in class au.edu.unsw.cse.FakeAppletStub
 
getParameter(String) - Method in class mgui.pipelines.PipelineProcess
 
getParameter(String) - Method in class mgui.pipelines.PipelineProcessInstance
Returns the parameter instance for the specified name.
getParameterFont() - Method in class mgui.interfaces.pipelines.trees.PipelineTree
 
getParameterInfo() - Method in class au.edu.unsw.cse.Applet3d
 
getParameters() - Method in class mgui.interfaces.projects.util.ConsolidateDirectoriesDialogBox
 
getParameters() - Method in class mgui.pipelines.PipelineProcess
 
getParameters() - Method in class mgui.pipelines.PipelineProcessInstance
 
getParameters(String[]) - Static method in class mgui.command.CommandInterpreter
Extracts parameters from a list of arguments, such that a parameter is specified by a dash.
getParent() - Method in class mgui.neuro.components.AbstractNeuronalComponent
 
getParent() - Method in class mgui.neuro.components.compartments.NeuronalCompartmentalComponent
 
getParent() - Method in interface mgui.neuro.components.NeuronalComponent
 
getParent(InterfaceGraphicWindow) - Method in class mgui.interfaces.InterfaceSplitPanel
Returns the parent panel of window.InterfaceSplitPanel
getParent2D() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getParentAttribute(String) - Method in class mgui.interfaces.shapes.InterfaceShape
 
getParentAttribute(String) - Method in class mgui.interfaces.shapes.Shape2DInt
 
getParentAttribute(String) - Method in class mgui.interfaces.shapes.Shape3DInt
 
getParentFrame() - Method in class mgui.interfaces.InterfaceDisplayPanel
 
getParentNode() - Method in class mgui.interfaces.trees.TreeEvent
 
getParentPanel() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
 
getParentPath() - Method in class mgui.interfaces.projects.ProjectDirectory
 
getParentPath(String) - Static method in class mgui.io.util.IoFunctions
Returns the path to the parent directory of the file or directory specified by path.
getParentSet() - Method in class mgui.interfaces.shapes.InterfaceShape
 
getParentShape() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getParentShape(InterfaceTreeNode) - Method in class mgui.interfaces.trees.InterfaceTreePanel
 
getParentTree() - Method in class mgui.interfaces.trees.InterfaceTreeNode
 
getPart(int, int) - Method in class mgui.interfaces.variables.VectorInt
Returns a part of this vector, between and including indices start and end.
getPart(int, int, int, int) - Method in class mgui.interfaces.variables.MatrixInt
Returns a sub-matrix of this matrix, defined by start and end indices.
getPart(String) - Method in class mgui.interfaces.variables.VariableInt
Parses part to return a part of this variable.
getPart(String, int, int) - Method in class mgui.interfaces.variables.StringVectorInt
Returns a part of this vector, between and including indices start and end.
getPart(String, int, int) - Method in class mgui.interfaces.variables.VectorInt
Returns a part of this vector, between and including indices start and end.
getPart(String, int, int, int, int) - Method in class mgui.interfaces.variables.MatrixInt
Returns a sub-matrix of this matrix, defined by start and end indices, with the given name.
getPart(String, String) - Method in class mgui.interfaces.variables.MatrixInt
Parses part to return a sub-matrix.
getPart(String, String) - Method in class mgui.interfaces.variables.StringVectorInt
 
getPart(String, String) - Method in class mgui.interfaces.variables.VariableInt
Parses part to return a part of this variable.
getPart(String, String) - Method in class mgui.interfaces.variables.VectorInt
 
getParticles(Mesh3D, int) - Static method in class mgui.geometry.mesh.MeshSmoothing
 
getParticles(Mesh3D, int, boolean[]) - Static method in class mgui.geometry.mesh.MeshSmoothing
 
getPassword() - Method in class mgui.datasources.DataConnection
Returns the password for this connection.
getPassword() - Method in class mgui.datasources.DataSourceDriver
 
getPath() - Method in class mgui.interfaces.projects.ProjectDirectory
 
getPath() - Method in class mgui.pipelines.NativeProcess
Returns the path to the native binaries for this process.
getPaths() - Method in class mgui.io.standard.xml.svg.SVGParser
 
getPatternFilter(String) - Static method in class mgui.io.util.IoFunctions
Contains pattern
getPatternFilter(String, String) - Static method in class mgui.io.util.IoFunctions
 
getPatterns() - Method in class mgui.io.util.WildcardFileFilter
 
getPearsonCoefficient(ArrayList<Double>, ArrayList<Double>) - Static method in class mgui.stats.StatFunctions
 
getPercentileValue(double) - Method in class mgui.stats.Histogram
Returns the value corresponding to the specified percentile
getPerimeter() - Method in class mgui.geometry.Polygon3D
 
getPhi() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getPickCanvasGeom() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getPickCanvasNode() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getPickedShape(PickCanvas, PickCanvas, Point, MguiInteger) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
Return the shape picked by a mouse click at the screen location defined by click_point.
getPickShapes(Point) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
Return a list of PickInfoShape2D objects containing information about the shapes intersecting point.
getPickShapes(Point) - Method in interface mgui.interfaces.shapes.ShapePanel2D
Searches the currently displayed shapes for an intersection with point.
getPickTolerance() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getPipeline() - Method in class mgui.pipelines.DynamicPipelineEvent
 
getPipeline() - Method in class mgui.pipelines.InterfacePipeline
 
getPipeline() - Method in class mgui.pipelines.PipelineFork
 
getPipeline() - Method in class mgui.pipelines.PipelineProcessInstance
 
getPipeline() - Method in class mgui.pipelines.PipelineTask
 
getPipeline(String) - Method in class mgui.interfaces.InterfaceWorkspace
Returns the pipeline with the given name.
getPipelineIndex(InterfacePipeline) - Method in class mgui.pipelines.PipelineFork
 
getPipelineMenu() - Method in class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree
 
getPipelineMenu() - Method in class mgui.interfaces.pipelines.trees.PipelineTree
 
getPipelineProcess(String) - Static method in class mgui.interfaces.InterfaceEnvironment
Gets a specific pipeline process with the compound name compound_name, of the form [library_name].[process_name].
getPipelineProcess(String, String) - Static method in class mgui.interfaces.InterfaceEnvironment
Gets a specific pipeline process with the name process_name from the library library_name.
getPipelineProcessLibraries() - Static method in class mgui.interfaces.InterfaceEnvironment
Gets a list of all registered pipeline process libraries.
getPipelineProcessLibrary(String) - Static method in class mgui.interfaces.InterfaceEnvironment
Returns the pipeline process library with the given name.
getPipelines() - Method in class mgui.interfaces.InterfaceWorkspace
Returns a list of the pipelines contained in this workspace.
getPipelines() - Method in class mgui.io.domestic.pipelines.PipelineXMLHandler
Returns a list of the pipelines loaded from XML.
getPipelines() - Method in class mgui.pipelines.PipelineFork
 
getPipelinesNode() - Method in class mgui.interfaces.InterfaceWorkspace
 
getPipelineTreeLabel() - Method in class mgui.pipelines.PipelineProcessInstance
 
getPipelineTreeLabel() - Method in class mgui.pipelines.PipelineTask
 
getPipelineTreeLabel() - Method in class mgui.pipelines.TaskParameterInstance
 
getPixel(int, int, int[], DataBuffer) - Method in class mgui.interfaces.shapes.util.GridSampleModel
Returns all samples for the specified pixel in an int array.
getPixels(int, int, int, int, int[], DataBuffer) - Method in class mgui.interfaces.shapes.util.GridSampleModel
Returns all samples for the specified rectangle of pixels in an int array, one sample per data array element.
getPlane() - Method in class mgui.geometry.Triangle3D
 
getPlane(Triangle3D) - Static method in class mgui.geometry.util.GeometryFunctions
Returns a plane containing tri.
getPlane3D() - Static method in class mgui.interfaces.shapes.util.Plane3DDialog
Shows a dialog box to specify a plane.
getPlane3D(Plane3D) - Static method in class mgui.interfaces.shapes.util.Plane3DDialog
Shows a dialog box to change the current plane.
getPlaneAt(int) - Method in class mgui.interfaces.shapes.SectionSet3DInt
Return the plane corresponding to the specified section
getPlaneEquation(Point3f, Vector3f) - Static method in class mgui.geometry.util.GeometryFunctions
Returns a plane equation as a vector {a, b, c, d}, given p, a point in the plane, and normal, its normal vector.
getPlaneFromNormalAndY(Point3f, Vector3f) - Static method in class mgui.geometry.Plane3D
Return a plane containing point x0, having normal normal, and having a Y axis which is (0, 1, 0) projected onto the plane.
getPlaneFromNormalAndY(Point3f, Vector3f, Vector3f) - Static method in class mgui.geometry.Plane3D
Return a plane containing point x0, having normal normal, and having a Y axis which is Y projected onto the plane.
getPlot() - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog
 
getPlot() - Method in class mgui.interfaces.plots.sgt.SgtPlotEvent
 
getPlot() - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
 
getPlot() - Method in class mgui.interfaces.plots.sgt.SgtScatterPlotDialog
 
getPlotDialog() - Method in class mgui.interfaces.plots.InterfacePlot
Subclasses can use this method to supply a dialog box which defines this plot object.
getPlotDialog() - Method in class mgui.interfaces.plots.InterfacePlotMulti
 
getPlotDialog() - Method in class mgui.interfaces.plots.osp.InterfaceStripChart
 
getPlotDialog() - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlot
 
getPlotDialog() - Method in class mgui.interfaces.plots.sgt.SgtScatterplot
 
getPlots() - Method in class mgui.interfaces.InterfaceWorkspace
 
getPlotType() - Method in class mgui.interfaces.plots.InterfacePlot
 
getPlotType() - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlot
 
getPlotType() - Method in class mgui.interfaces.plots.sgt.SgtScatterplot
 
getPlugins() - Method in class mgui.interfaces.tools.graphs.ToolGraph
 
getPngFileFilter() - Static method in class mgui.util.ImageFunctions
 
getPoint() - Method in class mgui.geometry.util.K3DBinaryTree.K3DNode
 
getPoint() - Method in class mgui.interfaces.shapes.Point2DInt
 
getPoint() - Method in class mgui.interfaces.tools.ToolInputEvent
 
getPoint2f(String) - Static method in class mgui.interfaces.xml.XMLFunctions
 
getPoint2fList(String) - Static method in class mgui.interfaces.xml.XMLFunctions
Parses s for '\t' and '\n' characters into a list of 2D points
getPoint2fStr(Point2f, String) - Static method in class mgui.numbers.NumberFunctions
 
getPoint3d(String) - Static method in class mgui.interfaces.xml.XMLFunctions
 
getPoint3dFromMatrix(Matrix) - Static method in class mgui.util.MathFunctions
 
getPoint3dStr(Point3d, String) - Static method in class mgui.numbers.NumberFunctions
 
getPoint3f(FloatTuple) - Method in class mgui.io.foreign.wavefront.WavefrontSurfaceLoader
 
getPoint3f(String) - Static method in class mgui.interfaces.xml.XMLFunctions
 
getPoint3fComp() - Static method in class mgui.geometry.util.GeometryFunctions
 
getPointFromPlane(Point2f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Return a 3D Cartesian coordinate for the specified 2D point in a plane parallel to plane.
getPointFromSection(Plane3D, float, Point2f) - Static method in class mgui.geometry.util.GeometryFunctions
Return a 3D Cartesian coordinate for the specified 2D point in a plane parallel to refPlane, and separated from it by along its normal vector.
getPointFromSection(Point2f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Deprecated.
Use getPointFromPlane
getPoints() - Method in class au.edu.unsw.cse.Edge3dPlus
return list of points associated with this triangle
getPoints() - Method in class au.edu.unsw.cse.Triangle3dPlus
return list of points associated with this triangle
getPointSet() - Method in class mgui.interfaces.shapes.PointSet2DInt
 
getPointSet() - Method in class mgui.interfaces.shapes.PointSet3DInt
 
getPointsFromPlane(ArrayList<Point2f>, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Return a set of 3D Cartesian coordinates for the specified 2D points in a plane parallel to plane.
getPolygon() - Method in class mgui.interfaces.shapes.Polygon2DInt
 
getPolygon() - Method in class mgui.interfaces.shapes.Polygon3DInt
 
getPolygonAngles(Polygon3D) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
Returns a list of angles corresponding to the nodes of polygon.
getPolygonDistances(ArrayList<Polygon2D>, ArrayList<Polygon2D>) - Method in class mgui.morph.sections.MorphEngine
 
getPolygonFromPlane(Polygon2D, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Returns a 3D polygon which is the representation of a 2D polygon expressed on the given plane.
getPolygonNode(int) - Method in class mgui.morph.sections.RadialRep2D
 
getPolygonNode(int) - Method in class mgui.morph.sections.RadialRep2DInt
 
getPolygonNode(LPolygon3DInt) - Method in class mgui.interfaces.shapes.PolygonSet3DInt
 
getPolygonNodeLabels() - Method in class mgui.morph.sections.RadialRep2DInt
 
getPolygonOffset() - Method in class mgui.interfaces.shapes.Mesh3DInt
 
getPolygonOffsetFactor() - Method in class mgui.interfaces.shapes.Mesh3DInt
 
getPolygons() - Method in class mgui.morph.sections.MappedPolygon2DPath
 
getPolygonSet(SectionSet3DInt) - Method in class mgui.morph.sections.MorphEngine
 
getPopupLength() - Method in class mgui.interfaces.graphics.InterfaceGraphic
 
getPopupLength() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
 
getPopupLength() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
 
getPopupLength() - Method in class mgui.interfaces.plots.InterfacePlotDisplay
 
getPopupLength() - Method in class mgui.interfaces.tables.InterfaceDataTable
 
getPopupMenu() - Method in class mgui.datasources.DataQuery
 
getPopupMenu() - Method in class mgui.datasources.DataSource
 
getPopupMenu() - Method in class mgui.datasources.DataTable
 
getPopupMenu() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
 
getPopupMenu() - Method in class mgui.interfaces.graphics.InterfaceGraphic
 
getPopupMenu() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
 
getPopupMenu() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getPopupMenu() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
 
getPopupMenu() - Method in class mgui.interfaces.graphs.DefaultGraph
 
getPopupMenu() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
 
getPopupMenu() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
 
getPopupMenu() - Method in class mgui.interfaces.InterfaceDisplayPanel
 
getPopupMenu() - Method in class mgui.interfaces.InterfacePanel
 
getPopupMenu() - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
 
getPopupMenu() - Method in class mgui.interfaces.layouts.CategoryTitle
 
getPopupMenu() - Method in class mgui.interfaces.maps.ContinuousColourBar
 
getPopupMenu() - Method in interface mgui.interfaces.menus.PopupMenuObject
Produces and returns a popup menu for this object.
getPopupMenu() - Method in class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree
 
getPopupMenu() - Method in class mgui.interfaces.pipelines.trees.PipelineTree
 
getPopupMenu() - Method in class mgui.interfaces.plots.InterfacePlotDisplay
 
getPopupMenu() - Method in class mgui.interfaces.projects.InterfaceProject
 
getPopupMenu() - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
 
getPopupMenu() - Method in class mgui.interfaces.shapes.InterfaceShape
 
getPopupMenu() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
 
getPopupMenu() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getPopupMenu() - Method in class mgui.interfaces.shapes.ShapeModel3D
 
getPopupMenu() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
 
getPopupMenu() - Method in class mgui.interfaces.shapes.trees.Shape2DTreeNode
 
getPopupMenu() - Method in class mgui.interfaces.shapes.trees.Shape3DTreeNode
 
getPopupMenu() - Method in class mgui.interfaces.shapes.VertexDataColumn
 
getPopupMenu() - Method in class mgui.interfaces.tables.InterfaceDataTable
 
getPopupMenu() - Method in class mgui.interfaces.tools.dialogs.DialogTool
 
getPopupMenu() - Method in class mgui.interfaces.tools.graphics.Tool2D
 
getPopupMenu() - Method in class mgui.interfaces.tools.graphics.Tool3D
 
getPopupMenu() - Method in class mgui.interfaces.tools.graphs.ToolGraph
 
getPopupMenu() - Method in class mgui.interfaces.tools.graphs.ToolGraphTransform
 
getPopupMenu() - Method in class mgui.interfaces.trees.InterfaceTreeNode
 
getPopupMenu(MouseEvent) - Method in class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree
 
getPopupMenu(MouseEvent) - Method in class mgui.interfaces.pipelines.trees.PipelineTree
 
getPopupMenu(MouseEvent) - Method in class mgui.interfaces.trees.InterfaceTreePanel
 
getPopupMenu(List<Object>) - Method in class mgui.datasources.DataQuery
 
getPopupMenu(List<Object>) - Method in class mgui.datasources.DataSource
 
getPopupMenu(List<Object>) - Method in class mgui.datasources.DataTable
 
getPopupMenu(List<Object>) - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
 
getPopupMenu(List<Object>) - Method in class mgui.interfaces.InterfacePanel
 
getPopupMenu(List<Object>) - Method in class mgui.interfaces.layouts.CategoryTitle
 
getPopupMenu(List<Object>) - Method in interface mgui.interfaces.menus.PopupMenuObject
Produces and returns a popup menu for this object.
getPopupMenu(List<Object>) - Method in class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree
 
getPopupMenu(List<Object>) - Method in class mgui.interfaces.pipelines.trees.PipelineTree
 
getPopupMenu(List<Object>) - Method in class mgui.interfaces.projects.InterfaceProject
 
getPopupMenu(List<Object>) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
 
getPopupMenu(List<Object>) - Method in class mgui.interfaces.shapes.Shape2DInt
 
getPopupMenu(List<Object>) - Method in class mgui.interfaces.shapes.Shape3DInt
Subclasses should override this if necessary and call super.getPopupMenu() to get this top-level menu and add items to it.
getPopupMenu(List<Object>) - Method in class mgui.interfaces.shapes.ShapeModel3D
 
getPopupMenu(List<Object>) - Method in class mgui.interfaces.shapes.VertexDataColumn
 
getPopupMenu(List<Object>) - Method in class mgui.interfaces.tools.dialogs.DialogTool
 
getPopupMenu(List<Object>) - Method in class mgui.interfaces.tools.graphics.Tool2D
 
getPopupMenu(List<Object>) - Method in class mgui.interfaces.tools.graphics.Tool3D
 
getPopupMenu(List<Object>) - Method in class mgui.interfaces.tools.graphs.ToolGraph
 
getPopupMenu(List<Object>) - Method in class mgui.interfaces.trees.InterfaceTreeNode
 
getPopupMenuLength() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getPopupSize() - Method in class mgui.interfaces.gui.InterfaceComboBox
 
getPosition() - Method in class mgui.interfaces.plots.sgt.SgtAxis
Returns the position of this axis, relative to the graph.
getPowerOfTwo(int) - Static method in class mgui.util.ImageFunctions
 
getPowerOfTwoImage(BufferedImage, double, int) - Static method in class mgui.util.ImageFunctions
Returns a power-of-two dimensioned version of image, with its boundaries filled with filler.
getPreCache() - Method in class mgui.interfaces.tables.InterfaceDataTable
 
getPreferredSize() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
Overrides JComponent.getPreferredSize to return slightly wider preferred size value.
getPreferredSize() - Method in class mgui.interfaces.shapes.util.StrokeSample
Returns the preferred size of the component.
getPreferredSize(JComponent) - Method in class mgui.interfaces.util.VerticalLabelUI
 
getPrev() - Method in class mgui.morph.sections.MorphNodeMap2D
 
getPreviousTool() - Method in class mgui.interfaces.tools.datasources.ToolDataSource
 
getPreviousTool() - Method in class mgui.interfaces.tools.dialogs.DialogTool
 
getPreviousTool() - Method in class mgui.interfaces.tools.graphics.Tool2D
 
getPreviousTool() - Method in class mgui.interfaces.tools.graphics.Tool3D
 
getPreviousTool() - Method in class mgui.interfaces.tools.graphs.ToolGraph
 
getPreviousTool() - Method in class mgui.interfaces.tools.plots.ToolPlot
 
getPreviousTool() - Method in interface mgui.interfaces.tools.Tool
Returns the tool that was set previous to this one, if one exists
getPreviousValue() - Method in class mgui.pipelines.StaticPipelineEvent
 
getPrevVertex(int) - Method in class mgui.geometry.Polygon2D
 
getPrimaryKeys() - Method in class mgui.datasources.DataTable
Returns a list of the primary keys in this table
getProcess() - Method in class mgui.interfaces.neuro.imaging.camino.CaminoTaskDialogBox
 
getProcess() - Method in class mgui.interfaces.pipelines.PipelineProcessInstanceDialogBox
 
getProcess() - Method in class mgui.pipelines.PipelineProcessInstance
Returns the process of which this is an instance.
getProcess(String) - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
 
getProcess(String) - Static method in class mgui.neuro.imaging.camino.CaminoEnvironment
 
getProcess(String) - Static method in class mgui.neuro.imaging.camino.CaminoProcesses
 
getProcesses() - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
 
getProcesses() - Static method in class mgui.neuro.imaging.camino.CaminoEnvironment
 
getProcesses() - Static method in class mgui.neuro.imaging.camino.CaminoProcesses
 
getProcesses(String) - Static method in class mgui.interfaces.InterfaceEnvironment
Returns a list of processes contained in the given library.
getProcessMenu() - Method in class mgui.interfaces.pipelines.trees.PipelineTree
 
getProcessState(int) - Static method in class mgui.command.CommandFunctions
Returns the ProcessState corresponding to the system exit value.
getProduct(MguiNumber, MguiNumber) - Static method in class mgui.numbers.NumberFunctions
 
getProgressBar() - Method in class mgui.interfaces.gui.InterfaceProgressBar
Returns the instance of JProgressBar used to render this panel.
getProgressMessage() - Method in class mgui.io.FileLoader
Returns a message for the progress updater, while loading is in progress.
getProgressMessage() - Method in class mgui.io.FileWriter
 
getProgressMessage() - Method in interface mgui.io.InterfaceIO
 
getProject() - Method in class mgui.io.foreign.camino.xml.CaminoProjectXMLHandler
 
getProject(String) - Method in class mgui.interfaces.InterfaceWorkspace
 
getProjectDir() - Method in class mgui.interfaces.projects.InterfaceProject
 
getProjectedPoint(Point3d, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Project point pt onto plane plane, along plane's normal vector.
getProjectedPoint(Point3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Project point pt onto plane plane, along plane's normal vector.
getProjectedPoint(Point3f, Plane3D) - Method in class mgui.interfaces.graphs.layouts.CoordinateLayout
 
getProjectedPoint(Point3f, Plane3D) - Method in class mgui.interfaces.shapes.graphs.util.Graph2DLayout
 
getProjectedPoint(Point3f, Vector3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Project point pt onto plane plane, along plane's normal vector.
getProjectedPoint3D(Point3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Project point pt onto plane plane, along plane's normal vector.
getProjectedPoint3D(Point3f, Vector3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Project point pt onto plane plane, along vector v.
getProjectedPolygon(Polygon3D, Plane3D, float, float) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
Returns a 2D polygon in section coordinates representing the projection of polygon onto plane, within the specified clipping distances.
getProjectedPolygon(Polygon3D, Plane3D, float, float, VertexDataColumn) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
Returns a 2D polygon in section coordinates representing the projection of polygon onto plane, within the specified clipping distances.
getProjectedPolygon_bak(Polygon3D, Plane3D, float, float, VertexDataColumn) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
Returns a 2D polygon in section coordinates representing the projection of polygon onto plane, within the specified clipping distances.
getProjectedToPlane(ArrayList<Point3f>, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Projects nodes onto plane and returns the 2D points.
getProjectedToPlane(Triangle3D, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Projects tri onto plane and returns the 2D triangle.
getProjectedToPlane(Vector3f, Vector3f) - Static method in class mgui.geometry.util.GeometryFunctions
Projects vector onto a plane with normal normal.
getProjectedToPlane2D(Vector3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Projects vector onto plane plane along its normal.
getProjectedToPlane2D(Vector3f, Vector3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Projects vector onto plane plane along its normal.
getProjectedVector(Mesh3D, MeshSmoothing.Particle) - Static method in class mgui.geometry.mesh.MeshSmoothing
Get the projection of this particle's charge vector onto the mesh surface.
getProjectedVector(Mesh3D, MeshSmoothing.Particle, boolean) - Static method in class mgui.geometry.mesh.MeshSmoothing
Get the projection of this particle's charge vector onto the mesh surface.
getProjectedVector(Vector3f, Vector3f) - Static method in class mgui.geometry.util.GeometryFunctions
Returns the projection of v onto u.
getProjectionPlane() - Method in class mgui.interfaces.graphs.layouts.CoordinateLayout
 
getProjectionPlane() - Method in class mgui.interfaces.shapes.graphs.util.Graph2DLayout
 
getProjects() - Method in class mgui.interfaces.InterfaceWorkspace
 
getProjectsNode() - Method in class mgui.interfaces.InterfaceWorkspace
 
getProperties() - Method in class mgui.interfaces.queries.QueryResult
Returns a list of the properties stored in this result, in the same order as they were added
getPropertyListener() - Method in interface mgui.interfaces.graphics.GraphicPropertyListener
 
getPropertyListener() - Method in class mgui.interfaces.graphics.InterfaceGraphic2DTextBox
 
getPropertyListener() - Method in class mgui.interfaces.graphics.InterfaceGraphicTextBox
 
getPROTO(String) - Method in class au.edu.unsw.cse.VRMLState
 
getProximity(Point2f) - Method in class mgui.geometry.LineSegment2D
 
getProximity(Point2f) - Method in class mgui.geometry.Polygon2D
 
getProximity(Point2f) - Method in class mgui.geometry.Shape2D
 
getProximity(Point2f) - Method in class mgui.interfaces.shapes.Shape2DInt
 
getProximity(Point3d) - Method in class mgui.interfaces.shapes.Shape3DInt
 
getProximity(Point3f) - Method in class mgui.geometry.Shape3D
Determines the proximity of point to this shape.
getProximityPoint(Point2f) - Method in class mgui.geometry.LineSegment2D
 
getProximityPoint(Point2f) - Method in class mgui.geometry.Polygon2D
 
getProximityPoint(Point2f) - Method in class mgui.geometry.Shape2D
 
getProximityPoint(Point3f) - Method in class mgui.geometry.Shape3D
Returns the point on this shape which is closest to point.
getQ_V_max() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getQ_Z_max() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getQuaternion(Vector3d, double) - Static method in class mgui.geometry.util.GeometryFunctions
 
getQueries() - Method in class mgui.interfaces.InterfaceWorkspace
 
getQueriesNode() - Method in class mgui.interfaces.InterfaceWorkspace
 
getQuery() - Method in class mgui.interfaces.queries.QueryEvent
 
getQuery() - Method in interface mgui.interfaces.tools.queries.QueryTool
 
getQuery() - Method in class mgui.interfaces.tools.shapes.ToolQueryShape2D
 
getQuery() - Method in class mgui.interfaces.tools.shapes.ToolQueryShape3D
 
getQueryMode() - Method in class mgui.interfaces.InterfaceSelectionPanel
 
getQueryMode() - Method in class mgui.interfaces.queries.InterfaceQueryPanel
 
getQuotient(MguiNumber, MguiNumber) - Static method in class mgui.numbers.NumberFunctions
 
getR(int, int) - Static method in class mgui.util.Colours
 
getR_NMDA() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getRa() - Method in class mgui.neuro.components.compartments.CompartmentalDendrite
 
getRadialNode(int) - Method in class mgui.morph.sections.RadialRep2D
 
getRadialNodesCopy() - Method in class mgui.morph.sections.ConstrainedRadialRepresentation
 
getRadiusAtNode(int) - Method in class mgui.morph.sections.RadialRep2D
 
getRadToDeg(double) - Static method in class mgui.geometry.util.GeometryFunctions
Converts radians to degrees.
getRandom() - Static method in class mgui.util.Colours
 
getRandom600() - Static method in class mgui.interfaces.maps.DiscreteColourMap
 
getRange() - Method in class mgui.interfaces.plots.sgt.SgtAxis
Returns the X axis range, from a string of the form
getRangeX() - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout
Returns the X axis range, from a string of the form
getRangeY() - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout
Returns the Y axis range, from a string of the form
getRate() - Method in class mgui.models.updaters.PulseTrainUpdater
 
getRate() - Method in class mgui.neuro.updaters.PulseTrainUpdater
 
getRate(double[], double[]) - Method in class mgui.neuro.components.AbstractNeuroComponent
 
getRate(double[], double[]) - Method in class mgui.neuro.components.compartments.AbstractCompartment
 
getRate(double[], double[]) - Method in class mgui.neuro.components.compartments.SimpleCompartment
 
getRate(double[], double[]) - Method in class mgui.neuro.components.cortical.functions.CorticalFunction
 
getRAxis() - Method in class mgui.geometry.Box3D
Returns a copy of this box's R-axis (analogous to Z-axis).
getRay() - Method in class mgui.geometry.neuro.mesh.SampleRay
 
getRayControlPoints(ArrayList<SampleRay>) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
Determines a set of control points which can be used to constrain the search for skull and scalp surfaces.
getRayCurves(ScalpAndSkullModelOptions, String, String) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
 
getRayCurves(ScalpAndSkullModelOptions, String, String, ArrayList<ArrayList<Double>>, Mesh3D, ArrayList<Double>) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
 
getRayCurvesBak(ScalpAndSkullModelOptions, String, String, ArrayList<ArrayList<Double>>, Mesh3D) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
 
getRays(ScalpAndSkullModelOptions, ArrayList<SampleRay>, ArrayList<SampleRay>, ProgressUpdater) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
Generates a set of sample rays from an instance of ScalpAndSkullModelOptions, including a brain hull surface and a T1-weighted brain image.
getRaysBlocking(ScalpAndSkullModelOptions, ArrayList<SampleRay>, ArrayList<SampleRay>, ProgressUpdater) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
Generates and fills three sets of sample rays based upon the parameters in options.
getRDim() - Method in class mgui.geometry.Box3D
Returns the geometric size of the z (R) dimension
getReasonableFormat(double) - Static method in class mgui.numbers.NumberFunctions
 
getReasonableString(double) - Static method in class mgui.numbers.NumberFunctions
 
getRecordCount() - Method in class mgui.datasources.DataRecordSet
 
getRecordCount() - Method in interface mgui.datasources.DataSet
 
getRecordSet() - Method in class mgui.interfaces.datasources.DataTableModel
 
getRecordSet(DataSourceItem) - Method in class mgui.datasources.DataSource
Returns a DataRecordSet object accessing the specified table in this data source.
getRect() - Method in class mgui.interfaces.shapes.Rect3DInt
 
getRed() - Method in class mgui.util.Colour
 
getRed() - Method in class mgui.util.Colour1f
 
getRed() - Method in class mgui.util.Colour2f
 
getRed() - Method in class mgui.util.Colour3f
 
getRed() - Method in class mgui.util.Colour4f
 
getRed(int) - Method in class mgui.image.util.WindowedColourModel
 
getRed(Object) - Method in class mgui.image.util.WindowedColourModel
 
getRedIndex() - Method in class mgui.image.util.WindowedColourModel
 
getRefPlane() - Method in class mgui.interfaces.shapes.SectionSet3DInt
Gets the reference plane (i.e., at index 0) for this section set.
getRegexDirFilter(String) - Static method in class mgui.io.util.IoFunctions
Matches pattern as a regular expression, returning only directories
getRegexFilter(String) - Static method in class mgui.io.util.IoFunctions
Matches pattern as a regular expression
getRegion() - Method in class mgui.neuro.graphs.CorticalNetworkGraphNode
 
getRegion(String) - Method in class mgui.io.domestic.network.CorticalNetworkMatrixInOptions
 
getRegion(String) - Method in class mgui.neuro.networks.CorticalNetwork
 
getRegionBoundaryNodeIndices(Mesh3D, ArrayList<MguiNumber>, int) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns a list of nodes which form the boundary of all regions defined by value, specified by the vertex-wise list values.
getRegression(ArrayList<Double>, ArrayList<Double>) - Static method in class mgui.stats.StatFunctions
Returns a SimpleRegression object for the two lists of values.
getRemoveFieldStatement(String, String) - Static method in class mgui.datasources.util.DataSourceFunctions
Returns an SQL statement for removing field from table.
getRemoveFieldStatement(String, String, DataSourceDriver) - Static method in class mgui.datasources.util.DataSourceFunctions
Returns an SQL statement for removing field from table.
getRenameFieldStatement(String, String, String) - Static method in class mgui.datasources.util.DataSourceFunctions
Returns an SQL statement to rename old_field to new_field.
getRenameFieldStatement(String, String, String, DataSourceDriver) - Static method in class mgui.datasources.util.DataSourceFunctions
Returns an SQL statement to rename old_field to new_field.
getRenameTableStatement(String, String) - Static method in class mgui.datasources.util.DataSourceFunctions
Returns an SQL statement to rename old_table to new_table.
getRenameTableStatement(String, String, DataSourceDriver) - Static method in class mgui.datasources.util.DataSourceFunctions
Returns an SQL statement to rename old_table to new_table.
getRenderMode() - Method in class mgui.interfaces.gui.InterfaceComboBoxBak
 
getRenderMode() - Method in class mgui.interfaces.shapes.Volume3DInt
Returns the current render mode of this volume
getRenderModes() - Static method in class mgui.interfaces.shapes.volume.Volume3DRenderer
 
getRenderModeStr() - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
 
getRenderTypes() - Static method in class mgui.interfaces.shapes.paths.PathDataRenderer
 
getRepeat() - Method in class mgui.models.updaters.PulseTrainUpdater
 
getRepeat() - Method in class mgui.neuro.updaters.PulseTrainUpdater
 
getResampledCurve(ArrayList<Double>, int, int) - Static method in class mgui.neuro.stats.SignalProcessing
Resample (interpolate with order) curve to specified number of samples.
getResampledImage(BufferedImage, double, double) - Static method in class mgui.util.ImageFunctions
Resamples image_to_scale and returns the result
getResampledImage(BufferedImage, int, int) - Static method in class mgui.util.ImageFunctions
Resamples image_to_scale and returns the result
getRestingV() - Method in class mgui.neuro.components.simple.SimpleDendrite
 
getRestingV() - Method in class mgui.neuro.components.simple.SimpleSoma
 
getRestingV() - Method in class mgui.neuro.components.simple.SimpleSynapse
 
getResult(String) - Method in class mgui.interfaces.queries.InterfaceQuery
Returns the result associated with object, if it exists; returns null otherwise.
getResults() - Method in class mgui.interfaces.queries.InterfaceQuery
Returns the results stored in this query, in the order they were added.
getResultSet(String) - Method in class mgui.datasources.DataSource
Returns a result set from the given SQL statement.
getResultTreeNode() - Method in class mgui.interfaces.queries.InterfaceQuery
Returns a set of tree nodes containing the results of this query.
getReversePolygon(Polygon2D) - Static method in class mgui.geometry.util.GeometryFunctions
Reverses the direction of this polygon (CW -> CCW or vice versa)
getRGB(int) - Method in class mgui.image.util.WindowedColourModel
 
getRGB(Object) - Method in class mgui.image.util.WindowedColourModel
 
getRGBtoRGBA(BufferedImage, boolean, double, double) - Static method in class mgui.util.Colours
 
getRGBtoRGBA(BufferedImage, double, double) - Static method in class mgui.util.Colours
 
getRm() - Method in class mgui.neuro.components.compartments.CompartmentalDendrite
 
getRoiCentroidsBlocking(Volume3DInt, String, int[], int, boolean, String, ProgressUpdater) - Static method in class mgui.geometry.volume.VolumeFunctions
Finds the centroids for all ROIs (identified as voxels with the same value).
getRoiIndices(Mesh3D, ArrayList<MguiNumber>, int) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns a list of indices corresponding to rois == roi.
getRoiSelection(Mesh3D, ArrayList<MguiNumber>, int) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns a vertex selection corresponding to rois == roi.
getRoiSubmesh(Mesh3D, ArrayList<MguiNumber>, int) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns a submesh of mesh including all vertices corresponding to rois == roi.
getRoot() - Method in class mgui.interfaces.trees.AbstractTreeTableModel
 
getRootDir() - Method in class mgui.interfaces.projects.InterfaceProject
 
getRootDir() - Method in class mgui.io.domestic.shapes.xml.InterfaceShapeXMLHandler
 
getRootDir() - Method in class mgui.io.domestic.shapes.xml.ShapeModel3DXMLHandler
 
getRootDir() - Method in class mgui.io.domestic.shapes.xml.ShapeSet3DXMLHandler
 
getRootDir() - Method in class mgui.pipelines.InterfacePipeline
 
getRootDirectory() - Method in class mgui.neuro.imaging.camino.CaminoProject
 
getRootFont() - Method in class mgui.interfaces.pipelines.trees.PipelineTree
 
getRootMeanSquaredError() - Method in interface mgui.models.dynamic.stats.DynamicModelStatistics
 
getRootMeanSquaredError() - Method in class mgui.neuro.stats.SimpleStatistics
 
getRootMeanSquaredError(ArrayList<MguiNumber>, ArrayList<MguiNumber>) - Static method in class mgui.stats.StatFunctions
Returns the root mean squared error (RMSE) for two lists of values.
getRotatedBox(Box3D, VolumeFunctions.VolumeAxis, VolumeFunctions.VolumeRotationAngle) - Static method in class mgui.geometry.volume.VolumeFunctions
 
getRotatedDims(int[], VolumeFunctions.VolumeAxis, VolumeFunctions.VolumeRotationAngle) - Static method in class mgui.geometry.volume.VolumeFunctions
 
getRotatedVector2D(Vector2d, double) - Static method in class mgui.geometry.util.GeometryFunctions
Rotates vector by angle, specified in radians.
getRotatedVector2D(Vector2f, double) - Static method in class mgui.geometry.util.GeometryFunctions
Rotates vector by angle, specified in radians.
getRotation() - Method in class mgui.geometry.Rect2D
Returns a copy of this rectangle's rotation vector.
getRotation() - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
 
getRotationTransform(Vector3d, double) - Static method in class mgui.geometry.util.GeometryFunctions
Creates a transformation matrix representing a rotation about axis by angle radians.
getRotX() - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
 
getRotY() - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
 
getRow(int) - Method in class mgui.interfaces.variables.MatrixInt
Returns row row as a VectorInt object.
getRow(Matrix, int) - Static method in class mgui.geometry.util.MatrixFunctions
Returns row as an ArrayList.
getRow(String, int) - Method in class mgui.interfaces.variables.MatrixInt
Returns row row as a VectorInt object.
getRowCount() - Method in class mgui.interfaces.attributes.table.AttributeTableModel
 
getRowCount() - Method in class mgui.interfaces.datasources.DataTableModel
 
getRowCount() - Method in class mgui.interfaces.gui.RowNumberTable
 
getRowCount() - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog.YTableModel
 
getRowCount() - Method in class mgui.interfaces.plots.sgt.SgtScatterPlotDialog.XYTableModel
 
getRowCount() - Method in class mgui.interfaces.queries.tables.QueryResultTableModel
 
getRowCount() - Method in class mgui.interfaces.shapes.InterfaceShapesPanel.VertexSelectionTableModel
 
getRowCount() - Method in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel.OverlayVolumeTableModel
 
getRowCount() - Method in class mgui.interfaces.trees.TreeTableModelAdapter
 
getRowCount() - Method in class mgui.interfaces.variables.tables.VariableTableModel
 
getRowCount() - Method in class mgui.io.domestic.maps.NameMapOutDialogBox.TableModel
 
getRowCount() - Method in class mgui.io.domestic.shapes.PointSet2DInputDialogBox.TableModel
 
getRowCount() - Method in class mgui.io.domestic.shapes.PointSet3DDataInputDialogBox.TableModel
 
getRowCount() - Method in class mgui.io.domestic.shapes.PointSet3DInputDialogBox.TableModel
 
getRowCount() - Method in class mgui.io.domestic.shapes.PolygonSet3DInputDialogBox.TableModel
 
getRowCount() - Method in class mgui.io.domestic.shapes.ShapeInputDialogBox.TableModel
 
getRowCount() - Method in class mgui.io.domestic.shapes.ShapeModel3DOutputDialog.TableModel
 
getRowCount() - Method in class mgui.io.domestic.shapes.SurfaceDataInputDialogBox.TableModel
 
getRowCount() - Method in class mgui.io.domestic.shapes.SurfaceDataOutputDialogBox.TableModel
 
getRowCount() - Method in class mgui.io.domestic.shapes.SurfaceInputDialogBox.TableModel
 
getRowCount() - Method in class mgui.io.domestic.shapes.VectorSet3DInputDialogBox.TableModel
 
getRowCount() - Method in class mgui.io.domestic.variables.MatrixInDialogBox.TableModel
 
getRowHeight(int) - Method in class mgui.interfaces.gui.RowNumberTable
 
getRowMaxes(Matrix) - Static method in class mgui.geometry.util.MatrixFunctions
Returns the maximums of the rows of M.
getRowMeans(Matrix) - Static method in class mgui.geometry.util.MatrixFunctions
Returns the means of the rows of M.
getRowMins(Matrix) - Static method in class mgui.geometry.util.MatrixFunctions
Returns the minimums of the rows of M.
getRowSums(Matrix) - Static method in class mgui.geometry.util.MatrixFunctions
Returns the sums of the rows of M.
getRSliceImage(int) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
Returns a slice image at the plane R=r.
getRSliceImage(int, WindowedColourModel) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
Returns a slice image at the plane R=r.
getSample(int) - Method in class mgui.geometry.neuro.mesh.SampleRay
 
getSample(int, int, int, DataBuffer) - Method in class mgui.interfaces.shapes.util.GridSampleModel
Returns as int the sample in a specified band for the pixel located at (x,y).
getSampledImage(BufferedImage) - Method in class mgui.interfaces.shapes.VolumeSet3DInt
Returns an image having a colour model with type BufferedImage.TYPE_INT_ARGB, with colours set from image's colour model.
getSampleDouble(int, int, int, DataBuffer) - Method in class mgui.interfaces.shapes.util.GridSampleModel
Returns the sample in a specified band for a pixel located at (x,y) as a double.
getSampleFloat(int, int, int, DataBuffer) - Method in class mgui.interfaces.shapes.util.GridSampleModel
Returns the sample in a specified band for the pixel located at (x,y) as a float.
getSamples() - Method in class mgui.geometry.neuro.mesh.SampleRay
 
getSamples(int, int, int, int, int, int[], DataBuffer) - Method in class mgui.interfaces.shapes.util.GridSampleModel
Returns the samples in a specified band for the specified rectangle of pixels in an int array, one sample per data array element.
getSAxis() - Method in class mgui.geometry.Box3D
Returns a copy of this box's S-axis (analogous to X-axis).
getScale() - Method in class mgui.image.util.WindowedColourModel
 
getScale() - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
 
getScaledBasisTransform() - Method in class mgui.geometry.Grid3D
Returns a matrix which will transform a vector expressed in world (model) coordinates to one expressed with respect to this box's coordinate space.
getScaledShape(Point2f, Rect2D, double) - Static method in class mgui.geometry.util.GeometryFunctions
 
getScaleX() - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
 
getScaleY() - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
 
getScene3DNode() - Method in class mgui.interfaces.graphics.util.Axes3D
 
getScene3DObject() - Method in class mgui.interfaces.shapes.Shape3DInt
Returns a BranchGroup representing this ShapeInt.
getScene3DObject(ShapeSelectionSet) - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getScene3DObject(ShapeSelectionSet) - Method in class mgui.interfaces.shapes.Shape3DInt
 
getScene3DObject(ShapeSelectionSet) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
 
getSchema() - Method in class mgui.interfaces.graphics.video.VideoTask
 
getScreenBounds(JComponent) - Static method in class mgui.interfaces.graphics.GraphicsFunctions
 
getScreenBounds(Rect2D) - Method in class mgui.interfaces.graphics.util.DrawingEngine
Returns the screen bounds of bounds, a 2D rectangular boundary in model space.
getScreenBounds(Rect2D) - Method in class mgui.interfaces.maps.Map2D
 
getScreenDist(double) - Method in class mgui.interfaces.graphics.util.DrawingEngine
 
getScreenDist(double) - Method in class mgui.interfaces.maps.Map2D
 
getScreenPoint(Point2d) - Method in class mgui.interfaces.graphics.util.DrawingEngine
Returns the screen coordinate of point, a 2D location in model space.
getScreenPoint(Point2f) - Method in class mgui.interfaces.graphics.util.DrawingEngine
Returns the screen coordinate of point, a 2D location in model space.
getScreenPoint(Point2f) - Method in class mgui.interfaces.maps.Map2D
Maps p from model space to screen space.
getScreenShot(float) - Method in class mgui.interfaces.graphics.InterfaceCanvas3D
 
getScreenShot(InterfaceGraphic3D, float) - Method in class mgui.interfaces.graphics.PostRenderingCanvas3D
Returns a screen shot created from an offscreen buffer for this canvas.
getScreenShot(Canvas3D) - Method in class mgui.io.domestic.videos.ImageStackVideoWriter
 
getScreenShot_bak3(InterfaceGraphic) - Method in class mgui.io.domestic.videos.ImageStackVideoWriter
 
getScreenShot3D(InterfaceGraphic3D) - Method in class mgui.io.domestic.videos.ImageStackVideoWriter
 
getScreenShot3D_bak4(InterfaceGraphic3D) - Method in class mgui.io.domestic.videos.ImageStackVideoWriter
 
getScreenWidth() - Method in class mgui.interfaces.maps.Map2D
 
getSDim() - Method in class mgui.geometry.Box3D
Returns the geometric size of the x (S) dimension
getSection3DShapes(SectionSet3DInt, int) - Method in class mgui.io.standard.xml.svg.SVGFileInterface
 
getSectionDist(int) - Method in class mgui.interfaces.shapes.SectionSet3DInt
Gets the distance of the section plane at index i from the reference plance (i.e., at index 0).
getSectionDist(int) - Method in class mgui.morph.sections.MorphSections3DInt
 
getSectionForShape(Shape2DInt) - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getSectionOf(ShapeSet2DInt) - Method in class mgui.interfaces.shapes.SectionSet3DInt
Returns the index of set in this section set object, if it exists.
getSectionSet() - Method in class mgui.io.domestic.shapes.xml.SectionSet3DXMLHandler
 
getSectionWindows() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
 
getSegmentLengths(Polygon2D) - Static method in class mgui.geometry.util.GeometryFunctions
Returns a list of the lengths of each segment in polygon.
getSegmentsIntersect(LineSegment2D, LineSegment2D) - Static method in class mgui.geometry.util.GeometryFunctions
Determines whether line segments l1 and l2 intersect.
getSegmentsIntersect(Polygon2D, Polygon2D) - Static method in class mgui.geometry.util.GeometryFunctions
 
getSelect() - Method in class au.edu.unsw.cse.VRMLState
 
getSelectedAnchor() - Method in class mgui.interfaces.maps.ContinuousColourBar
 
getSelectedBackground() - Method in class mgui.interfaces.attributes.tree.AttributeTreeCellEditor
 
getSelectedBackground() - Method in class mgui.interfaces.attributes.tree.AttributeTreeCellRenderer
 
getSelectedBackground() - Method in class mgui.interfaces.graphs.tree.GraphTreeCellRenderer
 
getSelectedBackground() - Method in class mgui.interfaces.shapes.trees.ShapeTreeCellRenderer
 
getSelectedColumn() - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
Returns the currently selected column, or null if no column is selected.
getSelectedCount() - Method in class mgui.interfaces.shapes.mesh.VertexSelection
Returns the count of selected vertices
getSelectedDirectory() - Method in class mgui.interfaces.projects.InterfaceProjectDialogBox
 
getSelectedFont() - Method in class mgui.interfaces.gui.FontDialog
 
getSelectedIcon() - Method in class mgui.neuro.imaging.camino.CaminoProject
 
getSelectedPipeline() - Method in class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree
 
getSelectedPipeline() - Method in class mgui.interfaces.pipelines.InterfacePipelinesPanel
 
getSelectedPipeline() - Method in class mgui.interfaces.pipelines.trees.PipelineTree
 
getSelectedPipelines() - Method in class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree
 
getSelectedPipelines() - Method in class mgui.interfaces.pipelines.InterfacePipelinesPanel
 
getSelectedPipelines() - Method in class mgui.interfaces.pipelines.trees.PipelineTree
 
getSelectedProcessInstance() - Method in class mgui.interfaces.pipelines.InterfacePipelinesPanel
 
getSelectedProcessInstance() - Method in class mgui.interfaces.pipelines.trees.PipelineTree
 
getSelectedTask() - Method in class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree
 
getSelectedTasks() - Method in class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree
 
getSelectedTasks() - Method in class mgui.interfaces.pipelines.trees.PipelineTree
 
getSelectFrame() - Method in interface au.edu.unsw.cse.Object3d
 
getSelectFrame() - Method in class au.edu.unsw.cse.Object3dAdaptor
 
getSelectFrame() - Method in class au.edu.unsw.cse.Point3dObject3d
 
getSelectionSet(String) - Method in class mgui.interfaces.shapes.ShapeModel3D
 
getSelectionSetNode() - Method in class mgui.interfaces.shapes.ShapeModel3D
 
getSelectionSets() - Method in class mgui.interfaces.InterfaceWorkspace
Returns a list of all selection sets currently in this workspace.
getSelectionSets() - Method in class mgui.interfaces.shapes.ShapeModel3D
Returns a list of this model's selection sets, including its working set.
getSelectionSets(InterfaceShape) - Method in class mgui.interfaces.shapes.ShapeModel3D
 
getSelfIntersections(Mesh3D, float) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns a list of face indices indicating which faces intersect within mesh.
getSelfIntersections(Mesh3D, float, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions
 
getSelfIntersectionsBlocking(Mesh3D, float, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns a list of face indices indicating which faces intersect within mesh.
getSensors() - Method in interface mgui.models.dynamic.DynamicModel
 
getSensors() - Method in class mgui.models.networks.AbstractNetworkModel
 
getSeriesReplaced(String, int) - Method in class mgui.interfaces.projects.ProjectDataItem
 
getSessionFrame() - Static method in class mgui.interfaces.InterfaceSession
Returns the frame for the current session.
getSetOperator() - Method in class mgui.pipelines.NativeProcess
Returns the set operator character for this process.
getSgtAttribute() - Method in class mgui.interfaces.plots.sgt.SgtPlotObject
Returns an SGT attribute object for this object
getSgtData() - Method in class mgui.interfaces.plots.sgt.SgtPlotObject
Returns the SGT data object for this object
getShape() - Method in class mgui.geometry.util.NodeShape
Gets the shape for this node shape, or the first if there are multiple shapes.
getShape() - Method in class mgui.interfaces.shapes.queries.QueryShapeVertex
 
getShape() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getShape() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getShape() - Method in class mgui.interfaces.shapes.trees.ShapeTreeNode
 
getShape() - Method in class mgui.interfaces.shapes.util.ShapeEvent
 
getShape() - Method in class mgui.interfaces.shapes.util.ShapeVertexObject
 
getShape() - Method in class mgui.io.domestic.shapes.ShapeDataInputOptions
 
getShape() - Method in class mgui.io.domestic.shapes.xml.InterfaceShapeXMLHandler
 
getShape() - Method in class mgui.morph.sections.RadialRep2DInt
 
getShape(int) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
 
getShape(int) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
Returns the ith member of this set
getShape(int) - Static method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
 
getShape(int) - Method in class mgui.io.domestic.shapes.ShapeOutputOptions
 
getShape(String) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
Searches this set for a shape named name and returns the first instance found.
getShape(String) - Static method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
 
getShape(String, boolean) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
Searches this set for a shape named name and returns the first instance found.
getShape(Shape3D) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
 
getShape(Shape3D) - Method in class mgui.interfaces.tools.shapes.ToolSelectShape3D
 
getShape2D(Plane3D, float, float) - Method in class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt
 
getShape2D(Plane3D, float, float) - Method in class mgui.interfaces.shapes.neuro.CorticalSurfaceSet3DInt
 
getShape2D(Plane3D, float, float) - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getShape2D(Plane3D, float, float) - Method in class mgui.interfaces.shapes.Shape3DInt
To be overridden by subclasses implementing a 2D representation
getShape2D(Plane3D, float, float) - Method in class mgui.interfaces.shapes.VectorSet3DInt
 
getShape2D(Plane3D, float, float, Matrix4d) - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
 
getShape2D(Plane3D, float, float, Matrix4d) - Method in class mgui.interfaces.shapes.Mesh3DInt
 
getShape2D(Plane3D, float, float, Matrix4d) - Method in class mgui.interfaces.shapes.PointSet3DInt
 
getShape2D(Plane3D, float, float, Matrix4d) - Method in class mgui.interfaces.shapes.Polygon3DInt
 
getShape2D(Plane3D, float, float, Matrix4d) - Method in class mgui.interfaces.shapes.Shape3DInt
To be overridden by subclasses implementing a 2D representation
getShape2D(Plane3D, float, float, Matrix4d) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
 
getShape2D(Plane3D, float, float, Matrix4d) - Method in class mgui.interfaces.shapes.Vector3DInt
 
getShape2D(Plane3D, float, float, Matrix4d) - Method in class mgui.interfaces.shapes.Volume3DInt
 
getShape2DInt(Plane3D, float, float) - Method in class mgui.interfaces.shapes.Shape3DInt
 
getShape2DInt(Plane3D, float, float, boolean) - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getShape2DInt(Plane3D, float, float, boolean) - Method in class mgui.interfaces.shapes.Shape3DInt
Determines a 2D shape which is the projection of this 3D shape onto plane, within the projection limits defined by above_dist and below_dist.
getShape2DInt(Plane3D, float, float, boolean) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
 
getShape2DType(Shape2DInt) - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getShape2DType(Shape2DInt, boolean) - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getShape3D(Plane3D) - Method in class mgui.interfaces.shapes.Image2DInt
 
getShape3D(Plane3D) - Method in class mgui.interfaces.shapes.Rect2DInt
 
getShape3D(Plane3D) - Method in class mgui.interfaces.shapes.Shape2DInt
 
getShape3D(Plane3D) - Method in class mgui.interfaces.shapes.Volume2DInt
 
getShape3DInt(Plane3D) - Method in class mgui.interfaces.shapes.Shape2DInt
Returns a 3D representation of this shape, assuming it belongs to plane.
getShape3DInt(Plane3D, boolean) - Method in class mgui.interfaces.shapes.Shape2DInt
Returns a 3D representation of this shape, assuming it belongs to plane.
getShape3DIntFromSection(Plane3D, float, Shape2DInt) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
 
getShape3DIntFromSection(Plane3D, float, Shape2DInt, boolean) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
 
getShapeCount() - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getShapeCount() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
 
getShapeCount() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
 
getShapeForName(String) - Method in class mgui.interfaces.InterfaceWorkspace
Searches the workspace for a shape with the given full name (i.e., {model}.{sets}.{shape_name}), and returns it if found.
getShapeModel() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
 
getShapeModel() - Method in class mgui.interfaces.shapes.trees.ShapeModel3DTreeNode
 
getShapeModel() - Method in class mgui.io.domestic.shapes.xml.ShapeModel3DXMLHandler
 
getShapeModel(String) - Method in class mgui.interfaces.InterfaceWorkspace
Returns the model with the given name, if it exists; returns null otherwise.
getShapeModelNode() - Method in class mgui.interfaces.InterfaceWorkspace
 
getShapeModels() - Method in class mgui.interfaces.InterfaceWorkspace
 
getShapes() - Method in class mgui.geometry.util.NodeShape
Returns a list of all shapes to be rendered
getShapes3D() - Method in class mgui.io.standard.xml.svg.SVGFileInterface
 
getShapeSceneNode() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
 
getShapeSceneNode() - Method in class mgui.interfaces.shapes.Shape3DInt
Returns this ShapeInt's Java3D node.
getShapeSceneNode(ShapeSelectionSet) - Method in class mgui.interfaces.shapes.Shape3DInt
 
getShapeSectionNode(SectionSet3DInt, int) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
 
getShapeSet() - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getShapeSet() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
 
getShapeSet() - Method in interface mgui.interfaces.shapes.ShapeSet
 
getShapeSet() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
 
getShapeSet() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
 
getShapeSet() - Method in class mgui.io.domestic.shapes.xml.ShapeSet2DXMLHandler
 
getShapeSet() - Method in class mgui.io.domestic.shapes.xml.ShapeSet3DXMLHandler
 
getShapeSet(int) - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getShapeSet(int) - Method in class mgui.morph.sections.MorphSections3DInt
 
getShapeSet(int, double) - Method in class mgui.interfaces.shapes.SectionSet3DInt
Return a ShapeSet2DInt of all objects intersected by the current section plane and its upper and lower bounds.
getShapeSet(int, double) - Method in class mgui.morph.sections.MorphSections3DInt
 
getShapeSet2D() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
 
getShapeSet2D() - Method in class mgui.interfaces.InterfaceDisplayPanel
 
getShapeSet2D() - Method in class mgui.interfaces.shapes.Shape2DSelectionSet
 
getShapeSet3DFromSection(Plane3D, float, ShapeSet2DInt, ShapeSelectionSet) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
 
getShapeSet3DInt() - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getShapeSet3DInt(ShapeSelectionSet) - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getShapeString() - Method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
 
getShapeType(Shape2DInt) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
 
getShapeType(Shape2DInt, boolean) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
 
getShapeType(Shape2DInt, ShapeSet2DInt, boolean) - Method in class mgui.interfaces.shapes.ShapeSet2DInt
 
getShapeType(Shape3DInt) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
 
getShapeType(Shape3DInt, boolean) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
 
getShapeVertexObject(Shape3D, MguiInteger) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
 
getShearX() - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
 
getShearY() - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
 
getShortestPaths(InterfaceAbstractGraph) - Static method in class mgui.interfaces.graphs.util.GraphFunctions
Returns an N x N matrix with the shortest paths lengths between each pair of vertices i and j, in graph.
getShortestPaths(InterfaceAbstractGraph, ArrayList<Integer>) - Static method in class mgui.interfaces.graphs.util.GraphFunctions
Returns an N x N matrix with the shortest paths lengths between each pair of vertices i and j, in vertices.
getShortName() - Method in class mgui.util.ScaledUnit
 
getShortName() - Method in class mgui.util.Unit
 
getShortXML() - Method in class mgui.interfaces.graphics.video.VideoTask
 
getShortXML(int) - Method in class mgui.datasources.DataConnection
 
getShortXML(int) - Method in class mgui.datasources.DataField
 
getShortXML(int) - Method in class mgui.datasources.DataQuery
 
getShortXML(int) - Method in class mgui.datasources.DataSource
 
getShortXML(int) - Method in class mgui.datasources.DataTable
 
getShortXML(int) - Method in class mgui.datasources.DataTableSet
 
getShortXML(int) - Method in class mgui.geometry.Shape2D
 
getShortXML(int) - Method in class mgui.geometry.Shape3D
 
getShortXML(int) - Method in class mgui.image.util.WindowedColourModel
 
getShortXML(int) - Method in class mgui.interfaces.attributes.Attribute
 
getShortXML(int) - Method in class mgui.interfaces.attributes.AttributeList
 
getShortXML(int) - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
 
getShortXML(int) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
 
getShortXML(int) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getShortXML(int) - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
 
getShortXML(int) - Method in class mgui.interfaces.graphics.video.Video
 
getShortXML(int) - Method in class mgui.interfaces.graphics.video.VideoTask
 
getShortXML(int) - Method in class mgui.interfaces.graphics.View3D
 
getShortXML(int) - Method in class mgui.interfaces.graphs.AbstractGraphEdge
 
getShortXML(int) - Method in class mgui.interfaces.graphs.AbstractGraphNode
 
getShortXML(int) - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
 
getShortXML(int) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
 
getShortXML(int) - Method in class mgui.interfaces.InterfaceDisplayPanel
 
getShortXML(int) - Method in class mgui.interfaces.InterfaceWorkspace
 
getShortXML(int) - Method in class mgui.interfaces.layouts.InterfaceLayoutWindow
 
getShortXML(int) - Method in class mgui.interfaces.layouts.LayoutItem
 
getShortXML(int) - Method in class mgui.interfaces.maps.Camera3D
 
getShortXML(int) - Method in class mgui.interfaces.maps.ContinuousColourMap
 
getShortXML(int) - Method in class mgui.interfaces.maps.DiscreteColourMap
 
getShortXML(int) - Method in class mgui.interfaces.maps.Map2D
 
getShortXML(int) - Method in class mgui.interfaces.maps.Map3D
 
getShortXML(int) - Method in class mgui.interfaces.maps.NameMap
 
getShortXML(int) - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
 
getShortXML(int) - Method in class mgui.interfaces.plots.InterfacePlotDisplay
 
getShortXML(int) - Method in class mgui.interfaces.projects.InterfaceProject
 
getShortXML(int) - Method in class mgui.interfaces.projects.ProjectDirectory
 
getShortXML(int) - Method in class mgui.interfaces.projects.ProjectInstance
 
getShortXML(int) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
 
getShortXML(int) - Method in class mgui.interfaces.shapes.Shape2DInt
 
getShortXML(int) - Method in class mgui.interfaces.shapes.Shape3DInt
 
getShortXML(int) - Method in class mgui.interfaces.shapes.ShapeModel3D
 
getShortXML(int) - Method in class mgui.interfaces.shapes.VertexDataColumn
 
getShortXML(int) - Method in class mgui.interfaces.tables.InterfaceDataTable
 
getShortXML(int) - Method in class mgui.interfaces.variables.VariableInt
 
getShortXML(int) - Method in interface mgui.interfaces.xml.XMLObject
Returns a short XML representation of this object.
getShortXML(int) - Method in class mgui.io.InterfaceIOOptions
 
getShortXML(int) - Method in class mgui.neuro.imaging.camino.CaminoProject
 
getShortXML(int) - Method in class mgui.numbers.MguiBoolean
 
getShortXML(int) - Method in class mgui.numbers.MguiDouble
 
getShortXML(int) - Method in class mgui.numbers.MguiFloat
 
getShortXML(int) - Method in class mgui.numbers.MguiInteger
 
getShortXML(int) - Method in class mgui.numbers.MguiLong
 
getShortXML(int) - Method in class mgui.numbers.MguiShort
 
getShortXML(int) - Method in class mgui.pipelines.PipelineProcess
 
getShortXML(int) - Method in class mgui.pipelines.PipelineProcessInstance
 
getShortXML(int) - Method in class mgui.pipelines.PipelineTask
 
getShortXML(int) - Method in class mgui.util.Colour
 
getShortXML(int) - Method in class mgui.util.Colour3f
 
getShortXML(int) - Method in class mgui.util.Colour4f
 
getShowAxes() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getShowBorder() - Method in class mgui.interfaces.graphics.util.Axes3D
 
getShowErrors() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
 
getShowLabels() - Method in class mgui.interfaces.graphics.Graphic2DGrid
 
getShowLabels() - Method in class mgui.interfaces.graphics.util.Axes3D
 
getShowLabels() - Method in class mgui.interfaces.shapes.VectorSet3DInt
 
getShowOutput() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
 
getShowSection3D() - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getSide(int, int) - Method in class mgui.geometry.Box3D
Returns 4 points representing a side of this box.
getSide(InterfaceGraphicWindow) - Method in class mgui.interfaces.InterfaceSplitPanel
Returns the side of the split pane window is on.
getSides() - Method in class mgui.geometry.Rect2D
 
getSigmaToFWHM(double) - Static method in class mgui.stats.StatFunctions
Converts sigma (standard deviations) to full-width at half max (FWHM)
getSigmoid() - Method in class mgui.neuro.components.cortical.functions.BiexponentialFunction
 
getSignedAngle(Vector3d, Vector3d) - Static method in class mgui.geometry.util.GeometryFunctions
Determines the signed angle that v1 makes with v2.
getSignedDistance(Point3d, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Determines distance from point pt to plane plane.
getSignedDistance(Point3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
Determines distance from point pt to plane plane.
getSimplestColour(Colour, Colour) - Static method in class mgui.util.Colours
 
getSize() - Method in class mgui.geometry.Graph3D
 
getSize() - Method in class mgui.geometry.Grid3D
Returns the total number of data elements in this grid.
getSize() - Method in class mgui.geometry.mesh.Neighbourhood
 
getSize() - Method in class mgui.geometry.mesh.NeighbourhoodMesh
 
getSize() - Method in class mgui.geometry.Mesh3D
 
getSize() - Method in class mgui.geometry.neuro.mesh.SampleRay
 
getSize() - Method in class mgui.geometry.Polygon2D
 
getSize() - Method in interface mgui.geometry.Shape
 
getSize() - Method in class mgui.geometry.Shape2D
Returns the number of vertices in this shape.
getSize() - Method in class mgui.geometry.Shape3D
Returns the number of vertices in this shape.
getSize() - Method in class mgui.interfaces.attributes.AttributeList
 
getSize() - Method in class mgui.interfaces.io.DataSourceEvent
 
getSize() - Method in class mgui.interfaces.layouts.LayoutItem
Returns the size of this item, in document units.
getSize() - Method in class mgui.interfaces.maps.DiscreteColourMap
 
getSize() - Method in class mgui.interfaces.maps.NameMap
 
getSize() - Method in class mgui.interfaces.maps.ValueMap
 
getSize() - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog.YTableModel
 
getSize() - Method in class mgui.interfaces.plots.sgt.SgtScatterPlotDialog.XYTableModel
 
getSize() - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.RenderServer
 
getSize() - Method in class mgui.interfaces.shapes.Point2DInt
 
getSize() - Method in class mgui.interfaces.shapes.PolygonSet3DInt
 
getSize() - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getSize() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
 
getSize() - Method in interface mgui.interfaces.shapes.ShapeSet
Returns the number of shapes in this set
getSize() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
Returns the number of members in this set
getSize() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
 
getSize() - Method in class mgui.interfaces.shapes.VectorSet3DInt
 
getSize() - Method in class mgui.interfaces.variables.MatrixInt
 
getSize() - Method in class mgui.interfaces.variables.StringVectorInt
 
getSize() - Method in class mgui.interfaces.variables.VariableInt
Returns the total size (number of elements) of this variable.
getSize() - Method in class mgui.interfaces.variables.VectorInt
 
getSize(DataType) - Static method in class mgui.datasources.DataTypes
Returns the number of bytes required to store a value of DataType type.
getSizeForSQLType(int) - Static method in class mgui.datasources.DataTypes
Returns the number of bytes required to store a value of the SQL type type.
getSizeForType(int) - Static method in class mgui.datasources.DataTypes
Returns the number of bytes required to store a value of DataType value type.
getSizeR() - Method in class mgui.geometry.Grid3D
Returns the data dimensions in the z (R) dimension
getSizeS() - Method in class mgui.geometry.Grid3D
Returns the data dimensions in the x (S) dimension
getSizeT() - Method in class mgui.geometry.Grid3D
Returns the data dimensions in the y (T) dimension
getSizeV() - Method in class mgui.geometry.Grid3D
 
getSizeX() - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout
The X dimension of the graph; axes are defined relative to this.
getSizeY() - Method in class mgui.interfaces.plots.sgt.SgtCartesianLayout
The Y dimension of the graph; axes are defined relative to this.
getSkullAndScalpMeshes(int[][], ArrayList<SampleRay>, ArrayList<SampleRay>, ScalpAndSkullModelOptions) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
Generates meshes, given the control points; array is ordered as: inner skull outer skull scalp
getSkullAndScalpMeshes(int[][], ArrayList<SampleRay>, ArrayList<SampleRay>, ScalpAndSkullModelOptions, ProgressUpdater) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
Generates meshes, given the control points; array is ordered as: inner skull outer skull scalp control_point_A1 control_point_A2 control_point_A3 control_point_A4
getSkullAndScalpMeshesBlocking(int[][], ArrayList<SampleRay>, ArrayList<SampleRay>, ScalpAndSkullModelOptions, ProgressUpdater) - Static method in class mgui.geometry.neuro.mesh.NeuroMeshFunctions
Generates meshes, given the control points; array is ordered as: inner skull outer skull scalp control_point_A1 control_point_A2 control_point_A3 control_point_A4 ..and 4 additional meshes for subject control points
getSnapshot3DMode() - Static method in class mgui.interfaces.InterfaceEnvironment
Returns the current mode for take 3D screenshots.
getSolidColour() - Method in class mgui.image.util.WindowedColourModel
 
getSolidColour() - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
Returns the colour for solid colour rendering.
getSolver() - Method in class mgui.neuro.components.AbstractNeuroComponent
 
getSoma() - Method in class mgui.neuro.components.AbstractNeuron
 
getSoma() - Method in class mgui.neuro.components.compartments.CompartmentalNeuron
 
getSoma() - Method in interface mgui.neuro.components.Neuron
 
getSortedFace(Mesh3D.MeshFace3D) - Static method in class mgui.geometry.mesh.SortedMesh
 
getSortedX() - Method in class mgui.geometry.util.SortedShape3D
 
getSortedY() - Method in class mgui.geometry.util.SortedShape3D
 
getSortedZ() - Method in class mgui.geometry.util.SortedShape3D
 
getSource() - Method in class mgui.interfaces.datasources.DataTableModel
 
getSource() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
 
getSource() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getSource() - Method in class mgui.interfaces.InterfacePanel
Returns the source object for this panel; returns null if no source object is set.
getSource() - Method in class mgui.interfaces.maps.Camera3D.CameraLightSource
 
getSource() - Method in class mgui.interfaces.neuro.InterfaceNetworkTreeNode
 
getSource() - Method in class mgui.interfaces.neuro.InterfaceNeuroTreeNode
 
getSource() - Method in class mgui.interfaces.tables.InterfaceTableModel
Returns the source of data for this table.
getSource() - Method in class mgui.interfaces.variables.tables.VariableTableModel
 
getSource() - Method in class mgui.morph.sections.MorphNodeMap2D
 
getSource() - Method in class mgui.morph.sections.RadialRep2DInt
 
getSourceActions(JComponent) - Method in class mgui.interfaces.pipelines.trees.PipelineTreeTransferHandler
 
getSourceIndex() - Method in class mgui.morph.sections.AttributeNode2D
 
getSourceName() - Method in class mgui.datasources.DataSource
Returns the name of the underlying database (as contained in its URL).
getSourceName() - Method in class mgui.interfaces.tables.InterfaceDataTable
 
getSourceSignal() - Method in interface mgui.interfaces.io.InterfaceDataSource
Returns a list of type T, representing a signal emission.
getSourceSignal() - Method in class mgui.interfaces.plots.MatrixPlotDataSource
 
getSourceSignal() - Method in class mgui.interfaces.plots.PlotTimeSeriesDataSource
 
getSourceSignal() - Method in class mgui.interfaces.plots.PlotXYDataSource
 
getSourceSignal() - Method in class mgui.io.domestic.shapes.VolumeFileDataSource
 
getSourceSignal() - Method in class mgui.models.environments.AbstractEnvironmentDataSource
 
getSourceSignalAsBytes() - Method in interface mgui.interfaces.io.InterfaceDataSource
Returns an array of bytes, representing a signal emission.
getSourceSignalAsBytes() - Method in class mgui.interfaces.plots.MatrixPlotDataSource
 
getSourceSignalAsBytes() - Method in class mgui.interfaces.plots.PlotTimeSeriesDataSource
 
getSourceSignalAsBytes() - Method in class mgui.interfaces.plots.PlotXYDataSource
 
getSourceSignalAsBytes() - Method in class mgui.io.domestic.shapes.VolumeFileDataSource
 
getSourceSignalAsBytes() - Method in class mgui.models.environments.AbstractEnvironmentDataSource
 
getSourceSignalAsDouble(Volume3DInt) - Method in class mgui.io.domestic.shapes.VolumeFileDataSource
 
getSourceSignalX() - Method in interface mgui.interfaces.io.InterfaceDataSourceTimeSeries
Returns the X data for this source.
getSourceSignalX() - Method in class mgui.interfaces.plots.PlotTimeSeriesDataSource
 
getSourceSignalX() - Method in class mgui.models.environments.AbstractEnvironmentDataSource
 
getSourceSignalX(int) - Method in interface mgui.interfaces.io.InterfaceDataSourceXY
Returns the X data corresponding to this signal's i'th channel.
getSourceSignalX(int) - Method in class mgui.interfaces.plots.PlotTimeSeriesDataSource
 
getSourceSignalX(int) - Method in class mgui.interfaces.plots.PlotXYDataSource
 
getSourceSignalX(int) - Method in class mgui.models.environments.AbstractEnvironmentDataSource
 
getSourceSignalX(String) - Method in class mgui.interfaces.plots.PlotXYDataSource
 
getSourceSignalXY(int) - Method in interface mgui.interfaces.io.InterfaceDataSourceXY
Returns the X-Y data corresponding to this signal's i'th channel.
getSourceSignalXY(int) - Method in class mgui.interfaces.plots.PlotXYDataSource
 
getSourceSignalXY(int) - Method in class mgui.models.environments.AbstractEnvironmentDataSource
 
getSourceSignalXY(String) - Method in class mgui.interfaces.plots.PlotXYDataSource
 
getSourceSignalY() - Method in interface mgui.interfaces.io.InterfaceDataSourceTimeSeries
Returns the Y data corresponding to all channels.
getSourceSignalY() - Method in class mgui.interfaces.plots.PlotTimeSeriesDataSource
 
getSourceSignalY() - Method in class mgui.models.environments.AbstractEnvironmentDataSource
 
getSourceSignalY(int) - Method in interface mgui.interfaces.io.InterfaceDataSourceTimeSeries
Returns the Y data corresponding to this signal's i'th channel.
getSourceSignalY(int) - Method in interface mgui.interfaces.io.InterfaceDataSourceXY
Returns the Y data corresponding to this signal's i'th channel.
getSourceSignalY(int) - Method in class mgui.interfaces.plots.PlotTimeSeriesDataSource
 
getSourceSignalY(int) - Method in class mgui.interfaces.plots.PlotXYDataSource
 
getSourceSignalY(int) - Method in class mgui.models.environments.AbstractEnvironmentDataSource
 
getSourceSignalY(String) - Method in class mgui.interfaces.plots.PlotTimeSeriesDataSource
 
getSourceSignalY(String) - Method in class mgui.interfaces.plots.PlotXYDataSource
 
getSourceTypes() - Static method in class mgui.interfaces.graphics.InterfaceGraphic
 
getSourceURL() - Method in class mgui.interfaces.shapes.InterfaceShape
 
getSourceURL() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
 
getSpacing() - Method in class mgui.interfaces.graphics.Graphic2DGrid
 
getSpacing() - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getSpatialUnit(String) - Static method in class mgui.interfaces.InterfaceEnvironment
Returns the spatial unit with the specified name, or null if not spatial unit exists by that name.
getSpatialUnits() - Static method in class mgui.interfaces.InterfaceEnvironment
 
getSphereAtPoint(float, Point3d) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
Returns a TransformGroup with a sphere at the specified point, with the specified radius.
getSphereAtPoint(float, Point3d, boolean) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
Returns a TransformGroup with a sphere at the specified point, with the specified radius.
getSphereAtPoint(float, Point3d, Appearance, boolean) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
Returns a TransformGroup with a sphere at the specified point, with the specified radius and Appearance.
getSphereAtPoint(float, Point3f) - Static method in class mgui.interfaces.shapes.util.ShapeFunctions
Returns a TransformGroup with a sphere at the specified point, with the specified radius.
getSplitOrientation() - Method in class mgui.interfaces.InterfaceSplitPanel
Returns the current orientation for this split panel; see JSplitPane.VERTICAL_SPLIT.
getSplitPanelQueue(int) - Method in class mgui.interfaces.InterfaceSplitPanel
Returns a reversed queue of split panels, with the bottom-most being the highest in the nested tree
getSplitPanelStack() - Method in class mgui.interfaces.InterfaceSplitPanel
Returns a stack of split panels, with the top-most being the highest in the nested tree
getSplitRatio() - Method in class mgui.interfaces.InterfaceSplitPanel
 
getSQLForKey(String) - Method in class mgui.datasources.LinkedDataStream
 
getSQLName(String) - Method in class mgui.datasources.DataSourceDriver
Returns a string from name that is safe for this driver.
getSQLName(String) - Method in class mgui.datasources.tinysql.TinySQLDriver
 
getSQLQuote() - Method in class mgui.datasources.DataSourceDriver
Returns a driver-specific SQL quotation mark; subclasses should only override this if their drivers expect non-standard SQL input.
getSQLQuote() - Method in class mgui.datasources.postgresql.PostgreSQLDriver
 
getSQLQuote() - Method in class mgui.datasources.tinysql.TinySQLDriver
 
getSQLSortStr() - Method in class mgui.datasources.DataTable
 
getSQLSortStr(String[]) - Method in class mgui.datasources.DataTable
 
getSQLSortStr(String[], DataSourceDriver) - Method in class mgui.datasources.DataTable
 
getSQLSortStr(DataSourceDriver) - Method in class mgui.datasources.DataTable
 
getSQLStatement() - Method in class mgui.datasources.DataQuery
 
getSQLStatement() - Method in class mgui.datasources.DataTable
 
getSQLStatement() - Method in interface mgui.datasources.SQLObject
Produces an SQL statement with the default character set
getSQLStatement(int) - Method in class mgui.datasources.DataQuery
 
getSQLStatement(String[]) - Method in class mgui.datasources.DataTable
 
getSQLStatement(String[], DataSourceDriver) - Method in class mgui.datasources.DataTable
 
getSQLStatement(DataSourceDriver) - Method in class mgui.datasources.DataQuery
 
getSQLStatement(DataSourceDriver) - Method in class mgui.datasources.DataTable
 
getSQLStatement(DataSourceDriver) - Method in interface mgui.datasources.SQLObject
Produces an SQL statement with a driver-specific character set
getSQLString() - Method in class mgui.datasources.DataField
Returns an SQL string representing this field
getSQLString(DataSourceDriver) - Method in class mgui.datasources.DataField
Returns an SQL string representing this field, formatted to suit a specific driver (since the JDBC standard is not always used in a standard way....)
getSQLStrValue(String) - Static method in class mgui.datasources.DataTypes
Returns the equivalent integer value (from Types for the given type string.
getSQLType(int, int) - Method in class mgui.datasources.DataSourceDriver
Returns a driver-specific SQL quotation mark
getSQLType(int, int) - Method in class mgui.datasources.tinysql.TinySQLDriver
 
getSQLTypeClass(int) - Static method in class mgui.datasources.DataTypes
Return the class of given data type
getSQLTypeLabel(int) - Static method in class mgui.datasources.DataTypes
 
getSQLTypeObject(int) - Static method in class mgui.datasources.DataTypes
 
getSQLTypeStr(int) - Static method in class mgui.datasources.DataTypes
 
getSQLTypeStr(int, int) - Static method in class mgui.datasources.DataTypes
 
getSquaredDeltas(double[]) - Method in class mgui.models.environments.SimpleEnvironment
Returns the squared difference between this environment's current state and the given values.
getSquaredError() - Method in interface mgui.models.dynamic.stats.DynamicModelStatistics
 
getSquaredError() - Method in class mgui.neuro.stats.SimpleStatistics
 
getSSL() - Method in class mgui.datasources.DataSourceDriver
 
getSSliceImage(int) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
Returns a slice image at the plane S=s.
getSSliceImage(int, WindowedColourModel) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
Returns a slice image at the plane S=s.
getStart() - Method in class au.edu.unsw.cse.PointStack
 
getStart() - Method in class mgui.geometry.Vector2D
 
getStart() - Method in class mgui.geometry.Vector3D
 
getStart() - Method in class mgui.interfaces.graphics.video.VideoTask
Returns the start time for this task
getStartPolygon() - Method in class mgui.morph.sections.MappedPolygon2DPath
 
getStartPtScale() - Method in class mgui.interfaces.shapes.VectorSet3DInt
 
getStartRatio() - Method in class mgui.interfaces.shapes.Vector2DInt
 
getState() - Method in class mgui.models.dynamic.functions.ODEFunction
 
getState() - Method in class mgui.neuro.components.compartments.AbstractCompartment
 
getState() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getState() - Method in class mgui.pipelines.InterfacePipeline
Returns the state of this pipeline, or the root pipeline if this is not the root.
getStatus() - Method in class mgui.pipelines.PipelineTask
Returns the status of this task; one of: NotStarted Processing Success Failure
getStatusMessages(Point) - Method in class mgui.interfaces.graphics.InterfaceGraphic
Returns a list of status messages, to be displayed in the status bar
getStatusStr() - Method in class mgui.pipelines.PipelineTask
Returns the status of this task as a string; one of: NotStarted Processing Success Failure
getStep() - Method in class mgui.models.updaters.LinearUpdater
 
getStop() - Method in class mgui.interfaces.graphics.video.VideoTask
Returns the stop time for this task
getStrComparator() - Static method in class mgui.neuro.components.cortical.AbstractCorticalRegion
 
getStreams() - Method in class mgui.io.util.ParallelOutputStream
 
getString(double, int) - Static method in class mgui.numbers.MguiDouble
 
getString(double, int, boolean) - Static method in class mgui.numbers.MguiDouble
 
getString(double, String) - Static method in class mgui.numbers.MguiDouble
 
getString(float, int) - Static method in class mgui.numbers.MguiFloat
 
getString(float, String) - Static method in class mgui.numbers.MguiFloat
 
getString(int, String) - Static method in class mgui.numbers.MguiInteger
 
getString(int, String) - Static method in class mgui.numbers.MguiLong
 
getString(int, String) - Static method in class mgui.numbers.MguiShort
 
getStringForValue(int, Object) - Method in class mgui.io.domestic.datasources.ExportDataTableWriter
Returns a String corresponding to value.
getStroke() - Method in class mgui.interfaces.gui.LineStyleDialog
 
getStroke() - Method in class mgui.interfaces.shapes.util.StrokeSample
Returns the current Stroke object being displayed.
getStyle() - Method in class mgui.interfaces.graphics.Graphic2DGrid
 
getSubComponents() - Method in interface mgui.models.dynamic.DynamicModelComponent
 
getSubComponents() - Method in class mgui.neuro.components.AbstractAxon
 
getSubComponents() - Method in class mgui.neuro.components.AbstractDendrite
 
getSubComponents() - Method in class mgui.neuro.components.AbstractDendrites
 
getSubComponents() - Method in class mgui.neuro.components.AbstractMotorNeuron
 
getSubComponents() - Method in class mgui.neuro.components.AbstractNeuroComponent
Returns a list of the complete subcomponent tree.
getSubComponents() - Method in class mgui.neuro.components.AbstractNeuron
 
getSubComponents() - Method in class mgui.neuro.components.AbstractSensoryNeuron
 
getSubComponents() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
 
getSubdirectories() - Method in class mgui.interfaces.projects.ProjectDirectory
Returns a sorted list of this directory's subdirectories
getSubdirectory(String) - Method in class mgui.interfaces.projects.ProjectDirectory
 
getSubdirs() - Method in class mgui.interfaces.projects.InterfaceProject
 
getSubdirs(File, boolean) - Static method in class mgui.io.util.IoFunctions
 
getSubGrid(Point3f, Point3f) - Method in class mgui.geometry.Grid3D
Returns two points (min coords, max coords) which represent a subset of this grid which is bounded by the geometric box specified by p1 and p2 (i.e., a voxel must be contained within the box, or must enclose its boundary).
getSubjectIcon() - Static method in class mgui.interfaces.projects.ProjectInstance
 
getSubMesh(Mesh3D, ArrayList<Integer>) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns a submesh defined by the connect ring ring.
getSubMesh(Mesh3D, ArrayList<MguiNumber>, int, boolean) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns a submesh comprised of all unmasked (mask != 0) vertices and all faces whose vertices are retained.
getSubMesh(Mesh3D, ArrayList<MguiNumber>, int, boolean, boolean, HashMap<String, ArrayList<MguiNumber>>, HashMap<String, ArrayList<MguiNumber>>) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns a submesh based upon a mask.
getSubMesh(Mesh3D, ArrayList<MguiNumber>, int, boolean, HashMap<String, ArrayList<MguiNumber>>, HashMap<String, ArrayList<MguiNumber>>) - Static method in class mgui.geometry.mesh.MeshFunctions
 
getSubMesh(Mesh3D, ArrayList<MguiNumber>, int, int, boolean, boolean, HashMap<String, ArrayList<MguiNumber>>, HashMap<String, ArrayList<MguiNumber>>) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns a submesh comprised of all unmasked (mask != 0) vertices and all faces whose vertices are retained.
getSubMesh(Mesh3D, VertexSelection, boolean) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns a sub-mesh of mesh_old containing all vertices and associated faces in selection.
getSubMesh(Mesh3D, VertexSelection, boolean, boolean, HashMap<String, ArrayList<MguiNumber>>, HashMap<String, ArrayList<MguiNumber>>) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns a sub-mesh of mesh_old containing all vertices and associated faces in selection.
getSubMesh(Mesh3DInt, Mesh3DInt, boolean, boolean) - Method in class mgui.geometry.mesh.MeshEngine
 
getSubMesh(Mesh3DInt, Mesh3DInt, ArrayList<MguiNumber>, int, boolean, boolean) - Method in class mgui.geometry.mesh.MeshEngine
 
getSubSection(int) - Method in class mgui.morph.sections.MorphSections3DInt
Adds shapes from morph section set newSections to corresponding sections in this set.
getSubSectionDist(int) - Method in class mgui.morph.sections.MorphSections3DInt
 
getSubsections(ArrayList<MappedPolygon2DPath>, int, AttributeList) - Method in class mgui.morph.sections.MorphEngine
Given a set of mapped polygons, generate new subsections for each section s, which morph from polygon i to polygon j.
getSubSets() - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getSubSets() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
 
getSubSets() - Method in interface mgui.interfaces.shapes.ShapeSet
 
getSubSets() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
 
getSubSets() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
 
getSuccessMessage() - Method in class mgui.io.domestic.datasources.DataSourceDriverWriter
 
getSuccessMessage() - Method in class mgui.io.domestic.graphs.GraphFileLoader
 
getSuccessMessage() - Method in class mgui.io.domestic.maps.NameMapWriter
 
getSuccessMessage() - Method in class mgui.io.domestic.shapes.SurfaceDataFileLoader
 
getSuccessMessage() - Method in class mgui.io.domestic.shapes.SurfaceDataFileWriter
 
getSuccessMessage() - Method in class mgui.io.domestic.shapes.SurfaceFileLoader
 
getSuccessMessage() - Method in class mgui.io.domestic.shapes.SurfaceFileWriter
 
getSuccessMessage() - Method in class mgui.io.domestic.variables.MatrixFileWriter
 
getSuccessMessage() - Method in class mgui.io.FileLoader
Returns a message to indicate that loading was successful.
getSuccessMessage() - Method in class mgui.io.FileWriter
 
getSuccessMessage() - Method in interface mgui.io.InterfaceIO
 
getSuccessMessage() - Method in class mgui.pipelines.InterfacePipeline
 
getSuccessMessage() - Method in class mgui.pipelines.JavaProcess
 
getSuccessMessage() - Method in class mgui.pipelines.NativeProcess
 
getSuccessMessage() - Method in class mgui.pipelines.PipelineFork
 
getSuccessMessage() - Method in class mgui.pipelines.PipelineProcess
Returns the message to be displayed when this process has succeeded.
getSuccessMessage() - Method in class mgui.pipelines.PipelineProcessInstance
 
getSuccessMessage() - Method in class mgui.pipelines.PipelineTask
Message to display if this task terminated successfully
getSuccessStatus() - Method in class mgui.command.CommandInterpreter
 
getSum(double[]) - Static method in class mgui.numbers.NumberFunctions
 
getSum(MguiNumber, MguiNumber) - Static method in class mgui.numbers.NumberFunctions
 
getSumForColumn(Matrix, int) - Static method in class mgui.geometry.util.MatrixFunctions
Returns the sum of col.
getSumForRow(Matrix, int) - Static method in class mgui.geometry.util.MatrixFunctions
Returns the sum of row.
getSupportedObjects() - Method in class mgui.interfaces.io.InterfaceIOType
Returns a list of classes for objects which are supported by this I/O interface
getSupportedObjects() - Method in class mgui.io.domestic.datasources.DataSourceDriverLoader
 
getSupportedObjects() - Method in class mgui.io.domestic.datasources.DataSourceDriverWriter
 
getSupportedObjects() - Method in class mgui.io.domestic.datasources.DataSourceLoader
 
getSupportedObjects() - Method in class mgui.io.domestic.graphs.GraphFileLoader
 
getSupportedObjects() - Method in class mgui.io.domestic.maps.ColourMapLoader
 
getSupportedObjects() - Method in class mgui.io.domestic.maps.ContinuousColourMapWriter
 
getSupportedObjects() - Method in class mgui.io.domestic.maps.DiscreteColourMapWriter
 
getSupportedObjects() - Method in class mgui.io.domestic.printing.StlWriter
 
getSupportedObjects() - Method in class mgui.io.domestic.shapes.Graph3DWriter
 
getSupportedObjects() - Method in class mgui.io.domestic.shapes.InterfaceShapeWriter
 
getSupportedObjects() - Method in class mgui.io.domestic.shapes.ShapeModel3DLoader
 
getSupportedObjects() - Method in class mgui.io.domestic.shapes.SurfaceDataFileLoader
 
getSupportedObjects() - Method in class mgui.io.domestic.shapes.SurfaceDataFileWriter
 
getSupportedObjects() - Method in class mgui.io.domestic.shapes.SurfaceFileLoader
 
getSupportedObjects() - Method in class mgui.io.domestic.shapes.SurfaceFileWriter
 
getSupportedObjects() - Method in class mgui.io.domestic.shapes.VolumeFileLoader
 
getSupportedObjects() - Method in class mgui.io.domestic.shapes.VolumeFileWriter
 
getSupportedObjects() - Method in class mgui.io.FileLoader
 
getSupportedObjects() - Method in class mgui.io.FileWriter
 
getSupportedObjects() - Method in interface mgui.io.InterfaceIO
Returns a list of classes for objects which are supported by this I/O interface
getSupportingTypes(InterfaceObject) - Static method in class mgui.io.util.IoFunctions
Returns a list of IO types which are compatible (i.e., handle the same set of objects) as type.
getSurfaceNormals(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
Returns surface normals for all vertices of mesh, determined as the average vector of all triangular face normals.
getSynapseCount() - Method in class mgui.neuro.components.AbstractDendrite
 
getSynapseCount() - Method in class mgui.neuro.components.compartments.CompartmentalDendrite
 
getSynapseCount() - Method in interface mgui.neuro.components.Dendrite
 
getSynapses() - Method in class mgui.neuro.components.AbstractAxon
 
getSynapses() - Method in class mgui.neuro.components.AbstractDendrite
 
getSynapses() - Method in class mgui.neuro.components.AbstractDendrites
 
getSynapses() - Method in interface mgui.neuro.components.Axon
 
getSynapses() - Method in class mgui.neuro.components.compartments.CompartmentalDendrite
 
getSynapses() - Method in interface mgui.neuro.components.Dendrite
 
getSynapses() - Method in interface mgui.neuro.components.Dendrites
 
getSystemErrorStream() - Static method in class mgui.interfaces.InterfaceEnvironment
Gets the system input stream.
getSystemOutputStream() - Static method in class mgui.interfaces.InterfaceEnvironment
Gets the system output stream.
getSystemRoot() - Static method in class mgui.io.util.IoFunctions
Returns the root directory of the current operating system.
getTab(int) - Static method in class mgui.interfaces.xml.XMLFunctions
Returns a string with the specified number of tabs
getTab(String) - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
 
getTabIndex(String) - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
 
getTable() - Method in class mgui.interfaces.tables.InterfaceDataTableTitle
 
getTable(String) - Method in class mgui.datasources.DataTableSet
 
getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class mgui.interfaces.attributes.table.AttributeCellEditor
 
getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class mgui.interfaces.graphics.InterfaceGraphicPanel.GraphicWindowListEditor
 
getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class mgui.interfaces.maps.DiscreteColourMapTable.Editor
 
getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel.SliderTableColumn
 
getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel.AlphaSliderEditor
 
getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class mgui.interfaces.trees.InterfaceTreeTable.TreeTableCellEditor
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class mgui.interfaces.attributes.table.AttributeCellRenderer
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class mgui.interfaces.graphics.InterfaceGraphicPanel.GraphicWindowListRenderer
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class mgui.interfaces.gui.RowNumberTable.RowNumberRenderer
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel.SliderTableColumn
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel.AlphaSliderRenderer
 
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class mgui.interfaces.trees.InterfaceTreeTable.TreeTableCellRenderer
 
getTableModel() - Method in class mgui.interfaces.tables.InterfaceDataTable
 
getTables() - Method in class mgui.datasources.DataTableSet
 
getTableSet() - Method in class mgui.datasources.DataSource
Returns the set of tables for this data source.
getTablesFromMetaData() - Method in class mgui.datasources.DataSource
Returns a list of tables retrieved from this data source's meta data.
getTarget() - Method in class mgui.morph.sections.MorphNodeMap2D
 
getTargetPoint() - Method in class mgui.interfaces.maps.Camera3D
 
getTargets() - Method in class mgui.neuro.components.cortical.AbstractCorticalConnection
 
getTask() - Method in class mgui.interfaces.pipelines.trees.TaskTreeNode
 
getTask() - Method in class mgui.pipelines.StaticPipelineEvent
 
getTaskAtIndex(int) - Method in class mgui.pipelines.InterfacePipeline
 
getTaskIndex() - Method in class mgui.pipelines.StaticPipelineEvent
 
getTaskIndex(PipelineTask) - Method in class mgui.pipelines.InterfacePipeline
 
getTaskInstance() - Method in class mgui.interfaces.graphics.video.VideoTaskType
 
getTaskMenu() - Method in class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree
 
getTaskMenu() - Method in class mgui.interfaces.pipelines.trees.PipelineTree
 
getTaskNode(PipelineTask) - Method in class mgui.interfaces.pipelines.trees.PipelineTree
Searches for a child node having task as its user object.
getTaskNode(PipelineTask, InterfaceTreeNode) - Method in class mgui.interfaces.pipelines.trees.PipelineTree
Searches for a child node having task as its user object.
getTasks() - Method in class mgui.interfaces.graphics.video.Video
Returns all tasks in this video.
getTasks() - Method in class mgui.pipelines.InterfacePipeline
 
getTasks() - Method in class mgui.pipelines.PipelineFork
 
getTau() - Method in class mgui.neuro.components.cortical.functions.BiexponentialFunction
 
getTau() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getTauS() - Method in class mgui.neuro.components.cortical.functions.BiexponentialFunction
 
getTAxis() - Method in class mgui.geometry.Box3D
Returns a copy of this box's T-axis (analogous to Y-axis).
getTDim() - Method in class mgui.geometry.Box3D
Returns the geometric size of the y (T) dimension
getTempDir() - Static method in class mgui.io.util.IoFunctions
Returns this system's temporary directory
getTempInputPath() - Method in class mgui.pipelines.PipelineState
 
getTemplate() - Method in class mgui.datasources.postgresql.PostgreSQLDriver
Returns the name of the current template database
getTempOutputPath() - Method in class mgui.pipelines.PipelineState
 
getTestSet() - Method in interface mgui.models.dynamic.stats.DynamicModelStatistics
 
getTestSet() - Method in class mgui.neuro.stats.SimpleStatistics
 
getTexCoord(Point3f) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
 
getTexCoords() - Method in class mgui.interfaces.shapes.util.Image2DTexture
 
getTexCoords() - Method in class mgui.interfaces.shapes.util.TestTexture
 
getTexCoords(int) - Method in class mgui.interfaces.shapes.util.Image3DTexture
 
getTexCoords(String, int, float) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
 
getTexCoords(Polygon2D) - Method in class mgui.interfaces.shapes.util.TestTexture
 
getTexCoords3d(int) - Method in class mgui.interfaces.shapes.util.TestTexture
 
getTexCoordsForPoly(ArrayList<Point3f>) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
 
getTexCoordsX(int, float) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
 
getTexCoordsY(int, float) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
 
getTexCoordsZ(int, float) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
 
getTexGen2D(Shape3DInt) - Method in class mgui.interfaces.shapes.util.TestTexture
 
getTexGen3D(Shape3DInt) - Method in class mgui.interfaces.shapes.util.TestTexture
 
getText() - Method in class mgui.geometry.Text2D
 
getText() - Method in class mgui.interfaces.shapes.Text2DInt
 
getTextNonSelectionColor() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
Returns the color the text is drawn with when the node isn't selected.
getTextSelectionColor() - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
Returns the color the text is drawn with when the node is selected.
getTexture() - Method in class mgui.interfaces.shapes.util.Image2DTexture
 
getTexture() - Method in class mgui.interfaces.shapes.util.Image3DTexture
 
getTexture() - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
 
getTexture() - Method in class mgui.interfaces.shapes.Volume3DInt
 
getTextureType(String) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
 
getTextValue() - Method in class mgui.datasources.DataField
 
getTextValue(String) - Method in class mgui.datasources.DataField
 
getThreshold() - Method in class mgui.neuro.components.simple.SimpleSoma
 
getTimeFromStr(String) - Static method in class mgui.util.TimeFunctions
 
getTimer() - Static method in class mgui.command.CommandInterpreter
 
getTimeStr(long) - Static method in class mgui.util.TimeFunctions
 
getTimeStr(long, String) - Static method in class mgui.util.TimeFunctions
 
getTitle() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
 
getTitle() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
 
getTitle() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getTitle() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
 
getTitle() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
 
getTitle() - Method in class mgui.interfaces.InterfacePanel
 
getTitle() - Method in class mgui.interfaces.plots.InterfacePlot
 
getTitle() - Method in class mgui.interfaces.tables.InterfaceDataTable
 
getTitle() - Method in class mgui.io.domestic.datasources.DataSourceDriverWriter
 
getTitle() - Method in class mgui.io.domestic.graphs.GraphFileLoader
 
getTitle() - Method in class mgui.io.domestic.graphs.GraphFileWriter
 
getTitle() - Method in class mgui.io.domestic.maps.NameMapWriter
 
getTitle() - Method in class mgui.io.domestic.shapes.SurfaceDataFileLoader
 
getTitle() - Method in class mgui.io.domestic.shapes.SurfaceDataFileWriter
 
getTitle() - Method in class mgui.io.domestic.shapes.SurfaceFileLoader
 
getTitle() - Method in class mgui.io.domestic.shapes.SurfaceFileWriter
 
getTitle() - Method in class mgui.io.domestic.variables.MatrixFileWriter
 
getTitle() - Method in class mgui.io.FileLoader
 
getTitle() - Method in class mgui.io.FileWriter
 
getTitle() - Method in class mgui.io.foreign.wavefront.WavefrontSurfaceLoader
 
getTitle() - Method in interface mgui.io.InterfaceIO
 
getTitleButton() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
 
getTo() - Method in class mgui.interfaces.graphs.AbstractGraphEdge
 
getTool() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getTool() - Method in class mgui.interfaces.tools.ToolEvent
 
getToolLock() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
 
getToolLock() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getToolLock() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
 
getToolLock() - Method in class mgui.interfaces.InterfaceDisplayPanel
 
getToolTitle() - Method in class mgui.interfaces.tools.dialogs.DialogTool
 
getToolTitle() - Method in class mgui.interfaces.tools.shapes.ToolCreateMeshFromPolylines
 
getToolTitle() - Method in class mgui.interfaces.tools.shapes.ToolCutMeshWithPlane
 
getToolTitle() - Method in class mgui.interfaces.tools.shapes.ToolGetConvexHull2D
 
getToolTitle() - Method in class mgui.interfaces.tools.shapes.ToolGetMeshIntersectionPolylines
 
getTopoFile() - Method in class mgui.io.foreign.caret.CaretSurfaceInOptions
 
getTopoFile() - Method in class mgui.io.foreign.caret.CaretSurfaceOutDialogBox
 
getTopoFile() - Method in class mgui.io.standard.gifti.xml.GiftiXMLHandler
Returns the associated topo file, if one was set.
getTransferData(DataFlavor) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
 
getTransferData(DataFlavor) - Method in class mgui.interfaces.shapes.Shape2DInt
 
getTransferData(DataFlavor) - Method in class mgui.interfaces.shapes.Shape3DInt
 
getTransferData(DataFlavor) - Method in class mgui.interfaces.shapes.ShapeModel3D
 
getTransferData(DataFlavor) - Method in class mgui.pipelines.PipelineTask
 
getTransferDataFlavors() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
 
getTransferDataFlavors() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getTransferDataFlavors() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getTransferDataFlavors() - Method in class mgui.interfaces.shapes.ShapeModel3D
 
getTransferDataFlavors() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
 
getTransferDataFlavors() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
 
getTransferDataFlavors() - Method in class mgui.pipelines.PipelineTask
 
getTransferFunction() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
 
getTransferType(DataType) - Static method in class mgui.util.Colours
 
getTransform() - Method in class mgui.interfaces.maps.Map2D
Returns a transform corresponding to this map.
getTransform() - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
 
getTransformer(Layer) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
 
getTransforms() - Method in class mgui.io.standard.gifti.xml.GiftiXMLHandler
Returns the transform(s), if any were set
getTranslateX() - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
 
getTranslateXY() - Method in class mgui.interfaces.maps.Camera3D
 
getTranslateY() - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
 
getTransparencyAttributes() - Method in class mgui.interfaces.shapes.Mesh3DInt
 
getTree() - Method in class mgui.interfaces.trees.InterfaceTreePanel
 
getTreeCellEditorComponent(JTree, Object, boolean, boolean, boolean, int) - Method in class mgui.interfaces.attributes.tree.AttributeTreeCellEditor
 
getTreeCellEditorComponent(JTree, Object, boolean, boolean, boolean, int) - Method in class mgui.interfaces.queries.tables.QueryResultTableTreeEditor
 
getTreeCellEditorComponent(JTree, Object, boolean, boolean, boolean, int) - Method in class mgui.interfaces.shapes.trees.ShapeTreeCellEditor
 
getTreeCellEditorComponent(JTree, Object, boolean, boolean, boolean, int) - Method in class mgui.interfaces.trees.InterfaceTreeCellEditor
 
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class mgui.interfaces.attributes.tree.AttributeTreeCellRenderer
 
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
Configures the renderer based on the passed in components.
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class mgui.interfaces.graphs.tree.GraphTreeCellRenderer
 
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class mgui.interfaces.queries.tables.QueryResultTableTreeRenderer
 
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class mgui.interfaces.shapes.trees.ShapeTreeCellRenderer
 
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class mgui.interfaces.trees.InterfaceTreeCellRenderer
 
getTreeLabel() - Method in class mgui.datasources.DataConnection
 
getTreeLabel() - Method in class mgui.datasources.DataQuery
 
getTreeLabel() - Method in class mgui.datasources.DataSource
 
getTreeLabel() - Method in class mgui.datasources.DataTable
 
getTreeLabel() - Method in class mgui.datasources.DataTableSet
 
getTreeLabel() - Method in class mgui.datasources.LinkedDataStream
 
getTreeLabel() - Method in class mgui.interfaces.AbstractInterfaceObject
 
getTreeLabel() - Method in class mgui.interfaces.attributes.Attribute
 
getTreeLabel() - Method in class mgui.interfaces.attributes.AttributeList
 
getTreeLabel() - Method in class mgui.interfaces.graphics.util.Axes3D
 
getTreeLabel() - Method in class mgui.interfaces.graphs.DefaultGraph
 
getTreeLabel() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
 
getTreeLabel() - Method in class mgui.interfaces.InterfaceDisplayPanel
 
getTreeLabel() - Method in class mgui.interfaces.InterfaceOptions
 
getTreeLabel() - Method in class mgui.interfaces.InterfacePanel
 
getTreeLabel() - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
 
getTreeLabel() - Method in class mgui.interfaces.InterfaceWorkspace.CollectionTreeNode
 
getTreeLabel() - Method in class mgui.interfaces.io.InterfaceFile
 
getTreeLabel() - Method in class mgui.interfaces.io.InterfaceIOType
 
getTreeLabel() - Method in class mgui.interfaces.maps.Camera3D
 
getTreeLabel() - Method in class mgui.interfaces.maps.NameMap
 
getTreeLabel() - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
 
getTreeLabel() - Method in class mgui.interfaces.plots.InterfacePlot
 
getTreeLabel() - Method in class mgui.interfaces.plots.mgui.PlotMap2D
 
getTreeLabel() - Method in class mgui.interfaces.plots.sgt.SgtAxis
 
getTreeLabel() - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
 
getTreeLabel() - Method in class mgui.interfaces.projects.InterfaceProject
 
getTreeLabel() - Method in class mgui.interfaces.projects.ProjectDataItem
 
getTreeLabel() - Method in class mgui.interfaces.projects.ProjectDirectory
 
getTreeLabel() - Method in class mgui.interfaces.projects.ProjectInstance
 
getTreeLabel() - Method in class mgui.interfaces.queries.InterfaceQuery
 
getTreeLabel() - Method in class mgui.interfaces.shapes.InterfaceShape.VertexDataSet
 
getTreeLabel() - Method in class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt
 
getTreeLabel() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getTreeLabel() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getTreeLabel() - Method in class mgui.interfaces.shapes.VertexDataColumn
 
getTreeLabel() - Method in class mgui.interfaces.tables.InterfaceTableModel
 
getTreeLabel() - Method in interface mgui.interfaces.trees.TreeObject
Returns the label text to appear in a tree node.
getTreeLabel() - Method in class mgui.pipelines.PipelineProcess
 
getTreeLabel() - Method in class mgui.pipelines.PipelineProcessInstance
 
getTreeLabel() - Method in class mgui.pipelines.TaskParameterInstance
 
getTreeModel(InterfaceTreeNode) - Method in class mgui.interfaces.pipelines.trees.PipelineTree
 
getTreeNode() - Method in class mgui.interfaces.queries.QueryResult
 
getTreeNode() - Method in interface mgui.interfaces.shapes.util.TreeShape
 
getTreeNode(JTree) - Method in class mgui.neuro.imaging.camino.CaminoProject
 
getTreeNode(ShapeSet3DInt) - Method in class mgui.interfaces.graphics.InterfaceGraphic
 
getTreeNode(ShapeSet3DInt) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
 
getTreeNodeCopy() - Method in class mgui.interfaces.shapes.ShapeModel3D
 
getTreeNodeCopy() - Method in class mgui.models.dynamic.functions.Function
 
getTreeNodeCopy() - Method in class mgui.models.environments.SimpleEnvironment
 
getTreeValues(int) - Method in class mgui.geometry.util.K3DBinaryTree
Returns a list of values representing the position of each vertex in this tree.
getTriangulation(Point3f[]) - Static method in class mgui.geometry.mesh.MeshFunctions
Triangulates a set of nodes that form a ring.
getTrilinearVoxels(Grid3D, Point3f) - Static method in class mgui.geometry.volume.VolumeFunctions
Returns the trilinear neighbourhood of point, which includes the 8 voxels surrounding and enclosing it.
getTrue() - Method in class mgui.numbers.MguiBoolean
 
getTSliceImage(int) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
Returns a slice image at the plane T=t.
getTSliceImage(int, WindowedColourModel) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
Returns a slice image at the plane T=t.
getTuning() - Method in class mgui.neuro.components.simple.SimpleSensoryNeuron
 
getTupleStr(Tuple3d, int) - Static method in class mgui.interfaces.xml.XMLFunctions
 
getTupleStr(Tuple3f, int) - Static method in class mgui.interfaces.xml.XMLFunctions
 
getType() - Method in class mgui.interfaces.Clipboard.Item
 
getType() - Method in class mgui.interfaces.events.CameraEvent
 
getType() - Method in class mgui.interfaces.events.DialogActionEvent
 
getType() - Method in class mgui.interfaces.graphics.GraphicEvent
 
getType() - Method in class mgui.interfaces.graphics.video.Video
 
getType() - Method in class mgui.interfaces.graphics.video.Video3D
 
getType() - Method in class mgui.interfaces.graphics.WindowEvent
 
getType() - Method in class mgui.interfaces.graphs.AbstractGraphEdge
 
getType() - Method in class mgui.interfaces.InterfacePanel
 
getType() - Method in class mgui.interfaces.io.InterfaceIOType
 
getType() - Method in class mgui.interfaces.maps.Map
 
getType() - Method in class mgui.interfaces.maps.Map2D
 
getType() - Method in class mgui.interfaces.maps.Map3D
 
getType() - Method in class mgui.interfaces.maps.TypeMap
 
getType() - Method in class mgui.interfaces.plots.sgt.SgtAxis
Returns the type of this axis; one of: X Y
getType() - Method in class mgui.interfaces.projects.ProjectInstance
 
getType() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionEvent
 
getType() - Method in class mgui.interfaces.SplitPanelEvent
 
getType() - Method in class mgui.interfaces.tools.ToolEvent
 
getType() - Method in class mgui.interfaces.variables.MatrixInt
 
getType() - Method in class mgui.interfaces.variables.StringVectorInt
 
getType() - Method in class mgui.interfaces.variables.VariableInt
Returns a Class object which is the parameterized type of this variable.
getType() - Method in class mgui.pipelines.StaticPipelineEvent
 
getType(int) - Static method in class mgui.datasources.DataTypes
 
getType(int) - Static method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
 
getType(String) - Static method in class mgui.datasources.DataTypes
 
getType(String) - Static method in class mgui.interfaces.graphics.InterfaceGraphic
 
getTypeForSize(int) - Static method in class mgui.datasources.DataTypes
 
getTypeForSQL(int) - Static method in class mgui.datasources.DataTypes
Returns a DataType for the given SQL type (from Types).
getTypeForSQLStr(String) - Static method in class mgui.datasources.DataTypes
 
getTypeForTask(VideoTask) - Static method in class mgui.interfaces.graphics.video.VideoTaskType
 
getTypeRange(int) - Static method in class mgui.util.Colours
 
getTypeRange(int, ColorSpace) - Static method in class mgui.util.Colours
 
getTypeRange(ColorModel) - Static method in class mgui.util.Colours
 
getTypeRange(DataType) - Static method in class mgui.util.Colours
 
getTypes() - Method in class mgui.interfaces.maps.TypeMap
 
getTypeStr() - Method in class mgui.datasources.DataField
 
getTypeStr() - Method in class mgui.interfaces.maps.TypeMap
 
getTypeStr(InterfaceGraphic.GraphicType) - Static method in class mgui.interfaces.graphics.InterfaceGraphic
 
getTypeString() - Method in class mgui.interfaces.shapes.volume.VolumeMaskOptions_old
 
getUID() - Static method in class mgui.interfaces.InterfaceSession
Returns a unique identifier for this session.
getUnion(VertexSelection) - Method in class mgui.interfaces.shapes.mesh.VertexSelection
Returns a new selection which is the union of this object and selection.
getUnion(ShapeSet, boolean) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
 
getUnionBounds(Box3D, Box3D) - Static method in class mgui.geometry.util.GeometryFunctions
 
getUnionBounds(Rect2D, Rect2D) - Static method in class mgui.geometry.util.GeometryFunctions
 
getUnionSphere(Sphere3D, Sphere3D) - Static method in class mgui.geometry.util.GeometryFunctions
Returns a sphere that is the union of the two spheres s1 and s2
getUniqueName(String) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
Finds a unique name by iteratively adding numbers to the end of name.
getUnit() - Method in class mgui.interfaces.shapes.InterfaceShape
Returns the spatial unit for this shape set.
getUnit() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
 
getUnit() - Method in interface mgui.interfaces.shapes.ShapeSet
 
getUnit() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
 
getUnit() - Method in class mgui.neuro.graphs.NeuralNetNode
 
getUnit(String) - Static method in class mgui.interfaces.InterfaceEnvironment
 
getUnitCount() - Method in class mgui.neuro.networks.AbstractNeuralNet
 
getUnitX() - Method in class mgui.interfaces.plots.sgt.SgtPlotObject
Returns the unit for the X values of this object.
getUnitY() - Method in class mgui.interfaces.plots.sgt.SgtPlotObject
Returns the unit for the Y values of this object.
getUnknownValue() - Method in class mgui.datasources.LinkedDataStream
Value to use when a key is not found in the linked source
getUpdateable() - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getUpdateFieldStatement(String, DataField, DataField) - Static method in class mgui.datasources.util.DataSourceFunctions
Returns an SQL statement to update old_field to match new_field.
getUpdateFieldStatement(String, DataField, DataField, DataSourceDriver) - Static method in class mgui.datasources.util.DataSourceFunctions
Returns an SQL statement to update old_field to match new_field.
getUpVector() - Method in class mgui.interfaces.maps.Camera3D
 
getUrl() - Method in class mgui.datasources.DataConnection
 
getUrl() - Method in class mgui.datasources.DataSourceDriver
 
getUrl() - Method in class mgui.interfaces.datasources.DataSourceDialogPanel
 
getUrl(String) - Static method in class mgui.datasources.DataSourceDrivers
 
getURL() - Method in class mgui.io.FileWriter
 
getUrlFromName(String) - Method in class mgui.datasources.DataSourceDriver
 
getUrlFromName(String) - Method in class mgui.datasources.odbc.JdbcOdbcDriver
 
getUrlFromName(String) - Method in class mgui.datasources.postgresql.PostgreSQLDriver
 
getUrlFromName(String) - Method in class mgui.datasources.tinysql.TinySQLDriver
 
getUrlPrefix() - Method in class mgui.datasources.DataSourceDriver
 
getUrlPrefix() - Method in class mgui.datasources.odbc.JdbcOdbcDriver
 
getUrlPrefix() - Method in class mgui.datasources.tinysql.TinySQLDriver
 
getUrlReference() - Method in class mgui.datasources.DataSourceDriver
 
getUrlReference() - Method in interface mgui.interfaces.io.PersistentObject
Returns the URL reference for this persistent object; i.e., the location where its data were loaded and where it should be written.
getUrlReference() - Method in class mgui.interfaces.shapes.InterfaceShape
 
getUserObject() - Method in class mgui.interfaces.attributes.tree.AttributeTreeNode
 
getUserObject() - Method in class mgui.interfaces.shapes.trees.Shape2DTreeNode
 
getUserObject() - Method in class mgui.interfaces.shapes.trees.Shape3DTreeNode
 
getV_Ca() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getV_K() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getV_L() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getV_Na() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getV_T() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getV_T_Ca() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getV_T_K() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getV_T_Na() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getV_T_V() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getV_T_Z() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getVal() - Method in class mgui.interfaces.tools.ToolInputEvent
 
getValidTitle(String) - Method in class mgui.interfaces.InterfaceDisplayPanel
Returns a valid title for a new window in this display panel.
getVals() - Method in class mgui.interfaces.shapes.mesh.MeshDataMaskOptionsDialog
 
getValue() - Method in class mgui.datasources.DataField
 
getValue() - Method in class mgui.interfaces.attributes.Attribute
Returns the value of this Attribute.
getValue() - Method in class mgui.interfaces.attributes.AttributeSelectionMap
 
getValue() - Method in class mgui.interfaces.Clipboard.Item
 
getValue() - Method in class mgui.io.foreign.vol.CoordAttr
 
getValue() - Method in class mgui.io.foreign.vol.StringAttr
 
getValue() - Method in class mgui.numbers.MguiBoolean
 
getValue() - Method in class mgui.numbers.MguiDouble
 
getValue() - Method in class mgui.numbers.MguiFloat
 
getValue() - Method in class mgui.numbers.MguiInteger
 
getValue() - Method in class mgui.numbers.MguiLong
 
getValue() - Method in interface mgui.numbers.MguiNumber
Returns the value of this number
getValue() - Method in class mgui.numbers.MguiShort
 
getValue(byte[], DataType, ByteOrder) - Static method in class mgui.io.util.IoFunctions
 
getValue(int) - Method in class mgui.interfaces.maps.ValueMap
 
getValue(int) - Method in class mgui.interfaces.variables.StringVectorInt
 
getValue(int) - Method in class mgui.interfaces.variables.VectorInt
 
getValue(int, int) - Method in class mgui.interfaces.variables.MatrixInt
 
getValue(String) - Method in class mgui.interfaces.attributes.AttributeList
Get the current value of the attribute named name.
getValue(String) - Method in class mgui.interfaces.queries.QueryResult
Returns the value of the specified property
getValue(String) - Static method in class mgui.numbers.MguiDouble
 
getValue(String) - Static method in class mgui.numbers.MguiFloat
 
getValue(String) - Static method in class mgui.numbers.MguiInteger
 
getValue(String) - Static method in class mgui.numbers.MguiLong
 
getValue(String) - Static method in class mgui.numbers.MguiShort
 
getValue(String, ShapeDataInputOptions.Format) - Method in class mgui.io.domestic.shapes.ShapeDataLoader
 
getValue(List<Integer>) - Method in class mgui.interfaces.variables.MatrixInt
 
getValue(List<Integer>) - Method in class mgui.interfaces.variables.StringVectorInt
 
getValue(List<Integer>) - Method in class mgui.interfaces.variables.VariableInt
Returns the value at the given indices; throws an exception if they are out of bounds.
getValue(List<Integer>) - Method in class mgui.interfaces.variables.VectorInt
 
getValue(T, String) - Method in class mgui.datasources.LinkedDataStream
 
getValueAt(int, int) - Method in class mgui.datasources.DataRecordSet
Returns the value at the given record and field indices.
getValueAt(int, int) - Method in interface mgui.datasources.DataSet
 
getValueAt(int, int) - Method in class mgui.interfaces.attributes.table.AttributeTableModel
 
getValueAt(int, int) - Method in class mgui.interfaces.datasources.DataTableModel
 
getValueAt(int, int) - Method in class mgui.interfaces.gui.RowNumberTable
 
getValueAt(int, int) - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog.YTableModel
 
getValueAt(int, int) - Method in class mgui.interfaces.plots.sgt.SgtScatterPlotDialog.XYTableModel
 
getValueAt(int, int) - Method in class mgui.interfaces.queries.tables.QueryResultTableModel
 
getValueAt(int, int) - Method in class mgui.interfaces.shapes.InterfaceShapesPanel.VertexSelectionTableModel
 
getValueAt(int, int) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel.OverlayVolumeTableModel
 
getValueAt(int, int) - Method in class mgui.interfaces.trees.TreeTableModelAdapter
 
getValueAt(int, int) - Method in class mgui.interfaces.variables.tables.VariableTableModel
 
getValueAt(int, int) - Method in class mgui.io.domestic.maps.NameMapOutDialogBox.TableModel
 
getValueAt(int, int) - Method in class mgui.io.domestic.shapes.PointSet2DInputDialogBox.TableModel
 
getValueAt(int, int) - Method in class mgui.io.domestic.shapes.PointSet3DDataInputDialogBox.TableModel
 
getValueAt(int, int) - Method in class mgui.io.domestic.shapes.PointSet3DInputDialogBox.TableModel
 
getValueAt(int, int) - Method in class mgui.io.domestic.shapes.PolygonSet3DInputDialogBox.TableModel
 
getValueAt(int, int) - Method in class mgui.io.domestic.shapes.ShapeInputDialogBox.TableModel
 
getValueAt(int, int) - Method in class mgui.io.domestic.shapes.ShapeModel3DOutputDialog.TableModel
 
getValueAt(int, int) - Method in class mgui.io.domestic.shapes.SurfaceDataInputDialogBox.TableModel
 
getValueAt(int, int) - Method in class mgui.io.domestic.shapes.SurfaceDataOutputDialogBox.TableModel
 
getValueAt(int, int) - Method in class mgui.io.domestic.shapes.SurfaceInputDialogBox.TableModel
 
getValueAt(int, int) - Method in class mgui.io.domestic.shapes.VectorSet3DInputDialogBox.TableModel
 
getValueAt(int, int) - Method in class mgui.io.domestic.variables.MatrixInDialogBox.TableModel
 
getValueAt(Object, int) - Method in interface mgui.interfaces.trees.TreeTableModel
Returns the value to be displayed for node node, at column number column.
getValueAt(List<Integer>) - Method in class mgui.interfaces.variables.VariableInt
Returns the value of this variable at the given indices; throws an exception if they are out of bounds, or of a higher dimensionality than the variable supports.
getValueAtDistance(float) - Method in class mgui.interfaces.shapes.paths.PathDataRenderer
 
getValueAtVertex(int) - Method in class mgui.interfaces.shapes.VertexDataColumn
Returns the value in this column for the vertex at index, as an {link MguiDouble}
getValueAtVoxel(int, int, int) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
Returns the value in this column at voxel index [i, j, k]
getValueForObject(Object) - Static method in class mgui.numbers.NumberFunctions
Determines the numeric value of obj and returns it as a double.
getValueFromRecordSetAt(int, int) - Method in class mgui.interfaces.datasources.DataTableModel
 
getValueStr() - Method in class mgui.interfaces.attributes.Attribute
 
getValueStr(String) - Method in class mgui.interfaces.attributes.Attribute
 
getVar_Ca() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getVar_K() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getVar_Na() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getVar_V() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getVar_Z() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
 
getVariable() - Method in class mgui.interfaces.variables.tables.VariableTableModel
 
getVariableByName(String) - Method in class mgui.interfaces.InterfaceWorkspace
Returns the variable in this workspace corresponding to the given name.
getVariableCombo(InterfaceShape) - Static method in class mgui.interfaces.shapes.InterfaceShapesPanel.VertexSelectionTableModel
 
getVariableNames() - Method in class mgui.interfaces.io.DataBridgeNamedXY
 
getVariableNames() - Method in interface mgui.interfaces.io.DataInputStreamNamedXY
Returns a list of the channels in this stream.
getVariableNames() - Method in interface mgui.interfaces.io.DataOutputStreamNamedXY
Returns a list of the channels in this stream.
getVariableObjects() - Method in class mgui.interfaces.InterfaceWorkspace
Returns a list of all objects in this workspace which are instances of VariableObject.
getVariables() - Method in class mgui.interfaces.InterfaceWorkspace
Returns a list of all variables currently in this workspace.
getVariables() - Method in class mgui.interfaces.io.DataBridgeNamedXY
 
getVariables() - Method in interface mgui.interfaces.math.VariableObject
Returns a list of variables for this object, which can be inserted into a mathematical expression.
getVariables() - Method in class mgui.interfaces.shapes.InterfaceShape
Returns this shape's columns as a list of variables.
getVariablesNode() - Method in class mgui.interfaces.InterfaceWorkspace
 
getVariableType() - Method in interface mgui.interfaces.math.VariableObject
Specifies the class type of the object returned by getVariableValues().
getVariableType() - Method in class mgui.interfaces.shapes.InterfaceShape
 
getVariableValue(String, int[]) - Method in interface mgui.interfaces.math.VariableObject
Returns the value of a variable in this object, at the specified element location.
getVariableValue(String, int[]) - Method in class mgui.interfaces.shapes.InterfaceShape
 
getVariableValues(String) - Method in interface mgui.interfaces.math.VariableObject
Returns an object containing the set of values for variable.
getVariableValues(String) - Method in class mgui.interfaces.shapes.InterfaceShape
 
getVector() - Method in class mgui.geometry.Radius2D
 
getVector() - Method in class mgui.geometry.Vector2D
 
getVector() - Method in class mgui.geometry.Vector3D
 
getVector() - Method in class mgui.interfaces.shapes.Vector2DInt
 
getVector() - Method in class mgui.interfaces.shapes.Vector3DInt
 
getVector(Point2f, Point2f) - Static method in class mgui.geometry.util.GeometryFunctions
 
getVector2d(String) - Static method in class mgui.interfaces.xml.XMLFunctions
 
getVector3d(String) - Static method in class mgui.interfaces.xml.XMLFunctions
 
getVector3f(FloatTuple) - Method in class mgui.io.foreign.wavefront.WavefrontSurfaceLoader
 
getVector3f(String) - Static method in class mgui.interfaces.xml.XMLFunctions
 
getVectorAngle(Vector2f) - Static method in class mgui.geometry.util.GeometryFunctions
Returns the angle that a 2D vector makes with the x-axis.
getVectorEndpoint(Point2f, Vector2f) - Static method in class mgui.geometry.util.GeometryFunctions
Returns the endpoint of a vector starting at startPt.
getVectorFromAngles(double, double) - Static method in class mgui.geometry.util.GeometryFunctions
 
getVectorRotation(Vector3D) - Static method in class mgui.geometry.util.GeometryFunctions
Determines the rotation that converts [1, 0, 0] to vector.
getVectors() - Method in class mgui.interfaces.shapes.VectorSet3DInt
 
getVectorSet() - Method in class mgui.interfaces.shapes.Vector3DInt
 
getVectorStr(Tuple2d, int) - Static method in class mgui.interfaces.xml.XMLFunctions
 
getVectorStr(Tuple2f, int) - Static method in class mgui.interfaces.xml.XMLFunctions
 
getVectorTransform(Matrix4d, Vector3d) - Static method in class mgui.geometry.util.GeometryFunctions
 
getVersion() - Static method in class mgui.interfaces.InterfaceEnvironment
 
getVertex(int) - Method in class mgui.geometry.Box3D
 
getVertex(int) - Method in class mgui.geometry.Circle2D
 
getVertex(int) - Method in class mgui.geometry.Cube3D
 
getVertex(int) - Method in class mgui.geometry.Ellipse2D
 
getVertex(int) - Method in class mgui.geometry.Graph3D
 
getVertex(int) - Method in class mgui.geometry.Grid3D
Returns the midpoint of the voxel identified by i, where i is determined by the order s < t < r.
getVertex(int) - Method in class mgui.geometry.LineSegment2D
 
getVertex(int) - Method in class mgui.geometry.LineSegment3D
 
getVertex(int) - Method in class mgui.geometry.Mesh3D
 
getVertex(int) - Method in class mgui.geometry.Plane3D
 
getVertex(int) - Method in class mgui.geometry.Point2D
 
getVertex(int) - Method in class mgui.geometry.PointSet2D
 
getVertex(int) - Method in class mgui.geometry.PointSet3D
 
getVertex(int) - Method in class mgui.geometry.Polygon2D
 
getVertex(int) - Method in class mgui.geometry.Polygon3D
 
getVertex(int) - Method in class mgui.geometry.Radius2D
 
getVertex(int) - Method in class mgui.geometry.Rect2D
 
getVertex(int) - Method in class mgui.geometry.Rect3D
 
getVertex(int) - Method in class mgui.geometry.Shape2D
 
getVertex(int) - Method in class mgui.geometry.Shape3D
Returns the vertex at the specified index as a Point3f.
getVertex(int) - Method in class mgui.geometry.Sphere3D
 
getVertex(int) - Method in class mgui.geometry.Text2D
 
getVertex(int) - Method in class mgui.geometry.Triangle2D
 
getVertex(int) - Method in class mgui.geometry.Triangle3D
 
getVertex(int) - Method in class mgui.geometry.Vector2D
 
getVertex(int) - Method in class mgui.geometry.Vector3D
 
getVertex(int) - Method in class mgui.interfaces.shapes.Shape2DInt
 
getVertex(int) - Method in class mgui.interfaces.shapes.Shape3DInt
Returns the vertex at index i.
getVertex(int) - Method in class mgui.morph.sections.RadialRep2D
 
getVertexAlpha(int) - Method in class mgui.interfaces.shapes.PointSet3DInt
 
getVertexAppearance(int) - Method in class mgui.interfaces.shapes.PointSet3DInt
 
getVertexAppearance(int) - Method in class mgui.interfaces.shapes.Shape3DInt
Returns the appearance of vertex i.
getVertexAppearance(AbstractGraphNode) - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
 
getVertexByLabel(String) - Method in class mgui.interfaces.graphs.DefaultGraph
Returns the node corresponding to label.
getVertexColour() - Method in class mgui.interfaces.shapes.InterfaceShape
Returns the colour of this shape's vertices.
getVertexColour() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getVertexColour() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getVertexColour(int) - Method in class mgui.interfaces.shapes.PointSet3DInt
 
getVertexColour(int) - Method in class mgui.interfaces.shapes.Shape3DInt
Returns the colour of vertex i; depends on whether the ShowData attribute is true, and this shape has a current vertex data column.
getVertexColour(AbstractGraphNode) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt
 
getVertexColour(AbstractGraphNode) - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
 
getVertexCount() - Method in class mgui.geometry.Mesh3D
 
getVertexCount() - Method in class mgui.interfaces.shapes.InterfaceShape
Returns the number of vertices defining the geometry of this shape.
getVertexCount() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getVertexCount() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getVertexData() - Method in class mgui.interfaces.shapes.InterfaceShape
Returns a live version of the data in the current column.
getVertexData(String) - Method in class mgui.interfaces.shapes.InterfaceShape
Returns a live version of the data in column.
getVertexData(String) - Method in class mgui.interfaces.shapes.Shape2DInt
 
getVertexData(String) - Method in class mgui.interfaces.shapes.Vector3DInt
 
getVertexDataColumn(String) - Method in class mgui.interfaces.shapes.InterfaceShape
Returns the vertex data column associated with name.
getVertexDataColumn(String) - Method in class mgui.interfaces.shapes.Shape2DInt
 
getVertexDataColumnCount() - Method in class mgui.interfaces.shapes.InterfaceShape
Returns the number of vertex data columns associated with this shape.
getVertexDataColumnNames() - Method in class mgui.interfaces.shapes.InterfaceShape
Returns a list of the names of all vertex data columns.
getVertexDataColumnNames() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getVertexDataColumnNode(VertexDataColumn) - Method in class mgui.interfaces.shapes.trees.ShapeTreeNode
 
getVertexDataColumns() - Method in class mgui.interfaces.shapes.InterfaceShape
Returns a list of all vertex data columns.
getVertexDataColumns() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getVertexDataMap() - Method in class mgui.interfaces.shapes.InterfaceShape
Retrieves a hash map containing the vertex-wise data associated with this shape.
getVertexDataMap() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getVertexDataNode() - Method in class mgui.interfaces.shapes.trees.ShapeTreeNode
 
getVertexIndex(int[]) - Method in class mgui.interfaces.shapes.Volume3DInt
Obtains an absolute (vertex) index for the specified voxel indices
getVertexIndex(int, int, int) - Method in class mgui.interfaces.shapes.Volume3DInt
Obtains an absolute (vertex) index for the specified voxel indices
getVertexLabeller() - Static method in class mgui.interfaces.graphs.util.GraphFunctions
Returns a Transformer object which produces a label for a vertex.
getVertexScale() - Method in class mgui.interfaces.shapes.InterfaceShape
Returns the scale of this shape's vertices
getVertexScale() - Method in class mgui.interfaces.shapes.PointSet2DInt
 
getVertexScale() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getVertexScale() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getVertexScale(int) - Method in class mgui.interfaces.shapes.Shape3DInt
Returns the scale for vertex i; this depends on whether ScaleVertexValues is set.
getVertexScale(AbstractGraphNode) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt
 
getVertexScale(AbstractGraphNode) - Method in class mgui.interfaces.shapes.graphs.Graph3DInt
 
getVertexSelection() - Method in class mgui.interfaces.shapes.InterfaceShape
Returns a list of the currently selected vertices for this shape.
getVertexSelection() - Method in class mgui.interfaces.shapes.Shape2DInt
TODO: implement me
getVertexSelection() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getVertexShape() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getVertexShape(AbstractGraphNode) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt
 
getVertexShape(AbstractGraphNode) - Method in class mgui.interfaces.shapes.PointSet2DInt
 
getVertexShapes() - Static method in class mgui.interfaces.InterfaceEnvironment
Returns a map of vertex shapes.
getVertexWiseCurvature(Mesh3D, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions
Computes the mean curvature at each node in the mesh.
getVertexWiseCurvature_bak(Mesh3D, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions
Computes the mean curvature at each node in the mesh.
getVertexWiseCurvatureBak(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
 
getVertices() - Method in class mgui.geometry.Box3D
 
getVertices() - Method in class mgui.geometry.Circle2D
 
getVertices() - Method in class mgui.geometry.Cube3D
 
getVertices() - Method in class mgui.geometry.Ellipse2D
 
getVertices() - Method in class mgui.geometry.Graph3D
 
getVertices() - Method in class mgui.geometry.LineSegment2D
 
getVertices() - Method in class mgui.geometry.LineSegment3D
 
getVertices() - Method in class mgui.geometry.Mesh3D
 
getVertices() - Method in class mgui.geometry.Plane3D
 
getVertices() - Method in class mgui.geometry.Point2D
 
getVertices() - Method in class mgui.geometry.PointSet2D
 
getVertices() - Method in class mgui.geometry.PointSet3D
 
getVertices() - Method in class mgui.geometry.Polygon2D
 
getVertices() - Method in class mgui.geometry.Polygon3D
 
getVertices() - Method in class mgui.geometry.Radius2D
 
getVertices() - Method in class mgui.geometry.Rect2D
 
getVertices() - Method in class mgui.geometry.Rect3D
 
getVertices() - Method in class mgui.geometry.Shape2D
 
getVertices() - Method in class mgui.geometry.Shape3D
Returns a list of this shape's nodes as Point3f's.
getVertices() - Method in class mgui.geometry.Sphere3D
 
getVertices() - Method in class mgui.geometry.Text2D
 
getVertices() - Method in class mgui.geometry.Triangle2D
 
getVertices() - Method in class mgui.geometry.Triangle3D
 
getVertices() - Method in class mgui.geometry.Vector2D
 
getVertices() - Method in class mgui.geometry.Vector3D
 
getVertices() - Method in class mgui.interfaces.shapes.queries.InterfaceShapeQuery
 
getVertices() - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getVertices() - Method in class mgui.interfaces.shapes.Shape2DInt
 
getVertices() - Method in class mgui.interfaces.shapes.Shape3DInt
 
getVertices() - Method in class mgui.interfaces.shapes.ShapeSet2DInt
 
getVertices() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
Returns a list of all nodes of all members in this set, including all shapes in all subsets.
getVertices() - Method in class mgui.morph.sections.RadialRep2D
 
getVertices(ArrayList<Point2f>) - Method in class mgui.geometry.Shape2D
 
getVerticesAsPoints() - Method in class mgui.interfaces.shapes.PointSet3DInt
 
getVerticesAsSpheres() - Method in class mgui.interfaces.shapes.PointSet3DInt
 
getVerticesFromSection(ArrayList<Point2f>, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
 
getVideo() - Method in class mgui.interfaces.graphics.video.xml.VideoXMLHandler
 
getVideo() - Method in class mgui.io.domestic.videos.VideoInputOptions
 
getVideo() - Method in class mgui.io.domestic.videos.VideoOutputOptions
 
getVideo3DClock() - Method in class mgui.interfaces.graphics.InterfaceGraphicPanel
 
getVideos() - Method in class mgui.interfaces.InterfaceWorkspace
 
getVideos3D() - Method in class mgui.interfaces.InterfaceWorkspace
 
getVideoTaskType(Class) - Static method in class mgui.interfaces.InterfaceEnvironment
 
getVideoTaskTypes() - Static method in class mgui.interfaces.InterfaceEnvironment
Returns a dialog panel for the indicated driver, if one exists.
getView() - Method in class au.edu.unsw.cse.Viewer
 
getView() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getView3D() - Method in interface mgui.interfaces.graphics.InterfaceView3DObject
 
getView3D() - Method in class mgui.interfaces.shapes.SectionSet3DInt
TODO: update coordinates to according to model's coordinate system public void setModel(ShapeModel3D m){ if (model == m) return; if (model != null) removeShapeListener(model); model = m; setID(model.idFactory.getID()); addShapeListener(model); Iterator itr = sections.values().iterator(); while (itr.hasNext()) itr.next().setModel(m); }
getView3D(double) - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getView3D(String) - Method in class mgui.interfaces.InterfaceWorkspace
 
getViewer() - Method in class au.edu.unsw.cse.VRMLState
 
getViewer() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
Gets the VisualizationViewer for this window.
getViewingPlatform() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getViewPlatformTransform() - Method in class mgui.interfaces.maps.Map3D
 
getViews() - Method in class mgui.io.domestic.views.View3DLoader.View3DXMLHandler
 
getViews3D() - Method in class mgui.interfaces.InterfaceWorkspace
 
getVisibility() - Method in class mgui.interfaces.shapes.Shape2DInt
Deprecated. 
getVolCount() - Method in class mgui.io.domestic.shapes.VolumeFileLoader
 
getVolCount() - Method in class mgui.io.standard.nifti.NiftiVolumeLoader
 
getVolume() - Method in class mgui.neuro.components.cortical.CorticalVolume
 
getVolume() - Method in class mgui.neuro.components.CorticalVolume
 
getVolume(String) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
 
getVolume3D() - Method in class mgui.io.domestic.shapes.VolumeFileLoader
 
getVolume3D() - Method in class mgui.io.foreign.vol.VolFileLoader
 
getVolume3D(int) - Method in class mgui.io.domestic.shapes.VolumeFileLoader
Load the volume at time point t.
getVolume3D(int) - Method in class mgui.io.foreign.vol.VolFileLoader
Return a Grid3D object representing the geometrical boundary of this volume
getVolume3D(int, ProgressUpdater) - Method in class mgui.io.domestic.shapes.VolumeFileLoader
Creates and returns a grid based on the metadata.
getVolume3D(VolumeInputOptions) - Method in class mgui.io.domestic.shapes.VolumeFileLoader
Creates and returns a grid based on the parameters in options.
getVolume3D(VolumeInputOptions, int, ProgressUpdater) - Method in class mgui.io.domestic.shapes.VolumeFileLoader
Creates and returns a grid based on the metadata.
getVolume3DCustom(VolumeInputOptions, int, ProgressUpdater) - Method in class mgui.io.domestic.shapes.VolumeFileLoader
Creates and returns a grid based on the parameters in options.
getVolume3DInt(Volume3DInt) - Method in class mgui.io.domestic.shapes.VolumeFileInterface
 
getVolumeAndArea(Mesh3D, ArrayList<MguiNumber>, ArrayList<MguiNumber>, double) - Static method in class mgui.geometry.mesh.MeshFunctions
Given a mesh and a set of thickness values, returns an area and a volume calculation (in that order).
getVolumeAsBytes(Volume3DInt) - Method in class mgui.io.domestic.shapes.VolumeFileDataSource
 
getVolumeMetadata() - Method in class mgui.io.domestic.shapes.VolumeFileLoader
Returns a set of metadata describing the current volume file.
getVolumeMetadata() - Method in class mgui.io.foreign.fsl.FSLVolumeLoader
 
getVolumeMetadata() - Method in class mgui.io.foreign.interfile.InterfileLoader
 
getVolumeMetadata() - Method in class mgui.io.foreign.vol.VolFileLoader
 
getVolumeMetadata() - Method in class mgui.io.foreign.wunil.WunilVolumeLoader
 
getVolumeMetadata() - Method in class mgui.io.standard.nifti.NiftiVolumeLoader
 
getVolumeOptions() - Method in class mgui.interfaces.neuro.CorticalThicknessDialogBox
 
getVolumeSpaceMidPoint(Grid3D, int) - Static method in class mgui.geometry.volume.VolumeFunctions
Returns the midpoint of this voxel in grid's coordinate space.
getVolumeSpaceMidPoint(Grid3D, int[]) - Static method in class mgui.geometry.volume.VolumeFunctions
Returns the midpoint of this voxel in grid's coordinate space.
getVoxelDim() - Method in interface mgui.interfaces.shapes.volume.VolumeMetadata
Returns the intravoxel dimension (e.g., time or vector/tensor information)
getVoxelDim() - Method in class mgui.io.foreign.fsl.FSLVolumeMetadata
 
getVoxelDim() - Method in class mgui.io.foreign.wunil.WunilDataset
 
getVoxelDim() - Method in class mgui.io.standard.nifti.NiftiMetadata
 
getVoxelMidPoint(int) - Method in class mgui.geometry.Grid3D
Returns the grid coordinate at the absolute index idx
getVoxelMidPoint(int[]) - Method in class mgui.geometry.Grid3D
Returns the geometric midpoint of voxel
getVoxelMidPoint(int, int, int) - Method in class mgui.geometry.Grid3D
Returns the geometric midpoint of the grid coordinate i, j, k
getVoxelsAsDouble() - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
Returns the voxel-wise data as a 3D array of type double
getVRMLColor(int) - Method in class au.edu.unsw.cse.View3d
get a colour for VRML objects
getVRMLColor(int) - Method in class au.edu.unsw.cse.VRMLState
 
getWeight() - Method in class mgui.graphs.networks.AbstractNetworkGraphConnection
 
getWeight() - Method in class mgui.interfaces.graphs.DefaultGraphEdge
 
getWeight() - Method in interface mgui.interfaces.graphs.WeightedGraphEdge
 
getWeight() - Method in class mgui.morph.sections.MorphNodeMap2D
 
getWeight() - Method in class mgui.neuro.components.cortical.AbstractCorticalConnection
 
getWeight() - Method in class mgui.neuro.components.simple.SimpleSynapse
 
getWeight() - Method in interface mgui.neuro.components.types.WeightedSynapse
 
getWeight() - Method in class mgui.neuro.graphs.NeuralNetConnection
 
getWeight(AbstractNetworkGraphNode) - Method in class mgui.graphs.networks.AbstractNetworkGraphNode
 
getWeight(AbstractNetworkGraphNode) - Method in class mgui.neuro.graphs.CorticalNetworkGraphNode
 
getWeight(NeuralNetNode) - Method in class mgui.neuro.graphs.NeuralNetNode
Returns the weight of the connection of this node with the target node, if it exists.
getWeightedBasicNormalStats(ArrayList<MguiNumber>, ArrayList<MguiNumber>) - Static method in class mgui.stats.StatFunctions
Return statistics describing a set of weighted normally distributed values ordered as follows (see http://en.wikipedia.org/wiki/Weighted_mean): mean sum standard deviation sum of squares
getWeightTransformer() - Static method in class mgui.interfaces.graphs.DefaultGraphEdge
 
getWidth() - Method in class mgui.geometry.Rect2D
Returns the width of this rectangle, which is a distance along rotation.
getWidth() - Method in class mgui.geometry.Rect3D
 
getWidth() - Method in class mgui.interfaces.layouts.LayoutItem
Returns the width of this item, in document units.
getWildcardFiles(File, String) - Static method in class mgui.pipelines.PipelineFunctions
Returns a list of all files that match the specified wildcard pattern.
getWildcardFiles(File, String, HashMap<String, ArrayList<String>>) - Static method in class mgui.pipelines.PipelineFunctions
Returns a list of all files that match the specified wildcard pattern.
getWildcardPathFiles(File, String) - Static method in class mgui.io.util.IoFunctions
Matches a wildcard string to all paths, relative to the directory root.
getWindow(int) - Method in class mgui.interfaces.InterfaceSplitPanel
Returns the window on the specified side of the panel; where 0 = left, 1 = right.
getWindowMid() - Method in class mgui.image.util.WindowedColourModel
 
getWindows() - Method in class mgui.interfaces.InterfaceDisplayPanel
Returns a list of the windows contained in this display panel.
getWindows() - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
 
getWindows(int, int) - Method in class mgui.interfaces.InterfaceSplitPanel
 
getWindowsBreadthFirst() - Method in class mgui.interfaces.InterfaceSplitPanel
Returns a breadth-first list of windows contained by this split panel; meaning that the first windows are on the top-most level and later windows are increasingly deep in the nesting tree.
getWindowsDepthFirst() - Method in class mgui.interfaces.InterfaceDisplayPanel
Returns a list of the windows contained in this display panel.
getWindowsDepthFirst() - Method in class mgui.interfaces.InterfaceSplitPanel
Returns a depth-first list of all windows contained by this split panel or its nested panels (left or top first).
getWindowsDepthFirst() - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
 
getWindowWidth() - Method in class mgui.image.util.WindowedColourModel
 
getWorkingSelection() - Method in class mgui.interfaces.shapes.ShapeModel3D
Returns the working selection set for this model.
getWorkspace() - Method in class mgui.datasources.DataSource
 
getWorkspace() - Method in class mgui.interfaces.InterfaceDisplayPanel
 
getWorkspace() - Static method in class mgui.interfaces.InterfaceSession
Returns the workspace for the current session.
getWorkspaceInstance() - Static method in class mgui.interfaces.InterfaceEnvironment
 
getWrapLines() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
 
getWriterComplement() - Method in class mgui.io.domestic.shapes.Mesh3DLoader
 
getWriterComplement() - Method in class mgui.io.FileLoader
Returns the InterfaceIOType of a FileWriter which is the complement of this loader; i.e., writes what this loader reads with identical encoding.
getWriterComplement() - Method in class mgui.io.foreign.minc.MincSurfaceLoader
 
getWriterComplement() - Method in class mgui.io.standard.gifti.GiftiSurfaceLoader
 
getWriterComplement() - Method in class mgui.io.standard.nifti.NiftiVolumeLoader
 
getWriterIOType() - Method in class mgui.interfaces.projects.ProjectDataItem
 
getWriterOptions() - Method in class mgui.datasources.DataSourceDriver
 
getWriterOptions() - Method in interface mgui.interfaces.io.PersistentObject
Returns the options used to last write this object, if available
getWriterOptions() - Method in class mgui.interfaces.shapes.InterfaceShape
 
getX() - Method in class mgui.interfaces.plots.XYData
Returns the X value for this pair (cloned)
getXAngle(Vector3d) - Static method in class mgui.geometry.util.GeometryFunctions
 
getXAngle(Vector3f) - Static method in class mgui.geometry.util.GeometryFunctions
Returns angle of vector with x-axis.
getXColour() - Method in class mgui.interfaces.shapes.TensorVolume3DInt
 
getXData() - Method in class mgui.interfaces.io.DataBridgeXY
 
getXData() - Method in interface mgui.interfaces.io.DataInputStreamXY
Returns the X data as a value of type T.
getXDim() - Method in class mgui.io.foreign.vol.VolFileLoader
Gets the X dimension of the volume
getXML() - Method in class mgui.datasources.DataConnection
 
getXML() - Method in class mgui.datasources.DataField
 
getXML() - Method in class mgui.datasources.DataQuery
 
getXML() - Method in class mgui.datasources.DataSource
 
getXML() - Method in class mgui.datasources.DataTable
 
getXML() - Method in class mgui.datasources.DataTableSet
 
getXML() - Method in class mgui.geometry.Shape2D
 
getXML() - Method in class mgui.geometry.Shape3D
 
getXML() - Method in class mgui.image.util.WindowedColourModel
 
getXML() - Method in class mgui.interfaces.attributes.Attribute
 
getXML() - Method in class mgui.interfaces.attributes.AttributeList
 
getXML() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
 
getXML() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
 
getXML() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getXML() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
 
getXML() - Method in class mgui.interfaces.graphics.video.Video
 
getXML() - Method in class mgui.interfaces.graphics.video.VideoTask
 
getXML() - Method in class mgui.interfaces.graphics.View3D
 
getXML() - Method in class mgui.interfaces.graphs.AbstractGraphEdge
 
getXML() - Method in class mgui.interfaces.graphs.AbstractGraphNode
 
getXML() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
 
getXML() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
 
getXML() - Method in class mgui.interfaces.InterfaceDisplayPanel
 
getXML() - Method in class mgui.interfaces.InterfaceWorkspace
 
getXML() - Method in class mgui.interfaces.layouts.InterfaceLayoutWindow
 
getXML() - Method in class mgui.interfaces.layouts.LayoutItem
 
getXML() - Method in class mgui.interfaces.maps.Camera3D
 
getXML() - Method in class mgui.interfaces.maps.ColourMap
 
getXML() - Method in class mgui.interfaces.maps.Map2D
 
getXML() - Method in class mgui.interfaces.maps.Map3D
 
getXML() - Method in class mgui.interfaces.maps.NameMap
 
getXML() - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
 
getXML() - Method in class mgui.interfaces.plots.InterfacePlotDisplay
 
getXML() - Method in class mgui.interfaces.projects.InterfaceProject
 
getXML() - Method in class mgui.interfaces.projects.ProjectDirectory
 
getXML() - Method in class mgui.interfaces.projects.ProjectInstance
 
getXML() - Method in class mgui.interfaces.shapes.InterfaceShape
 
getXML() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
 
getXML() - Method in class mgui.interfaces.shapes.ShapeModel3D
 
getXML() - Method in class mgui.interfaces.shapes.VertexDataColumn
 
getXML() - Method in class mgui.interfaces.tables.InterfaceDataTable
 
getXML() - Method in class mgui.interfaces.variables.VariableInt
 
getXML() - Method in interface mgui.interfaces.xml.XMLObject
Returns this object's XML representation as a single string.
getXML() - Method in class mgui.io.InterfaceIOOptions
 
getXML() - Method in class mgui.neuro.graphs.CorticalNetworkGraphNode
 
getXML() - Method in class mgui.neuro.imaging.camino.CaminoProject
 
getXML() - Method in class mgui.numbers.MguiBoolean
 
getXML() - Method in class mgui.numbers.MguiDouble
 
getXML() - Method in class mgui.numbers.MguiFloat
 
getXML() - Method in class mgui.numbers.MguiInteger
 
getXML() - Method in class mgui.numbers.MguiLong
 
getXML() - Method in class mgui.numbers.MguiShort
 
getXML() - Method in class mgui.pipelines.PipelineProcess
 
getXML() - Method in class mgui.pipelines.PipelineTask
 
getXML() - Method in class mgui.util.Colour
 
getXML(int) - Method in class mgui.datasources.DataConnection
 
getXML(int) - Method in class mgui.datasources.DataField
 
getXML(int) - Method in class mgui.datasources.DataQuery
 
getXML(int) - Method in class mgui.datasources.DataSource
 
getXML(int) - Method in class mgui.datasources.DataTable
 
getXML(int) - Method in class mgui.datasources.DataTableSet
 
getXML(int) - Method in class mgui.geometry.Mesh3D
 
getXML(int) - Method in class mgui.geometry.Plane3D
 
getXML(int) - Method in class mgui.geometry.Shape2D
 
getXML(int) - Method in class mgui.geometry.Shape3D
 
getXML(int) - Method in class mgui.image.util.WindowedColourModel
 
getXML(int) - Method in class mgui.interfaces.attributes.Attribute
 
getXML(int) - Method in class mgui.interfaces.attributes.AttributeList
 
getXML(int) - Method in class mgui.interfaces.attributes.video.AttributeObjectVideoTask
 
getXML(int) - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
 
getXML(int) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
 
getXML(int) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getXML(int) - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
 
getXML(int) - Method in class mgui.interfaces.graphics.video.RotateView3DTask
 
getXML(int) - Method in class mgui.interfaces.graphics.video.SetView3DTask
 
getXML(int) - Method in class mgui.interfaces.graphics.video.Video
 
getXML(int) - Method in class mgui.interfaces.graphics.video.VideoTask
 
getXML(int) - Method in class mgui.interfaces.graphics.View3D
 
getXML(int) - Method in class mgui.interfaces.graphs.AbstractGraphEdge
 
getXML(int) - Method in class mgui.interfaces.graphs.AbstractGraphNode
 
getXML(int) - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
 
getXML(int) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
 
getXML(int) - Method in class mgui.interfaces.InterfaceDisplayPanel
 
getXML(int) - Method in class mgui.interfaces.InterfaceWorkspace
 
getXML(int) - Method in class mgui.interfaces.layouts.InterfaceLayoutWindow
 
getXML(int) - Method in class mgui.interfaces.layouts.LayoutItem
 
getXML(int) - Method in class mgui.interfaces.maps.Camera3D
 
getXML(int) - Method in class mgui.interfaces.maps.ColourMap
 
getXML(int) - Method in class mgui.interfaces.maps.ContinuousColourMap
 
getXML(int) - Method in class mgui.interfaces.maps.DiscreteColourMap
 
getXML(int) - Method in class mgui.interfaces.maps.Map2D
 
getXML(int) - Method in class mgui.interfaces.maps.Map3D
 
getXML(int) - Method in class mgui.interfaces.maps.NameMap
 
getXML(int) - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
 
getXML(int) - Method in class mgui.interfaces.plots.InterfacePlotDisplay
 
getXML(int) - Method in class mgui.interfaces.projects.InterfaceProject
 
getXML(int) - Method in class mgui.interfaces.projects.ProjectDirectory
 
getXML(int) - Method in class mgui.interfaces.projects.ProjectInstance
 
getXML(int) - Method in class mgui.interfaces.shapes.InterfaceShape
 
getXML(int) - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
 
getXML(int) - Method in class mgui.interfaces.shapes.ShapeModel3D
 
getXML(int) - Method in class mgui.interfaces.shapes.VertexDataColumn
 
getXML(int) - Method in class mgui.interfaces.tables.InterfaceDataTable
 
getXML(int) - Method in class mgui.interfaces.variables.VariableInt
 
getXML(int) - Method in interface mgui.interfaces.xml.XMLObject
Returns this object's XML representation as a single string.
getXML(int) - Method in class mgui.io.domestic.shapes.SurfaceOutputOptions
 
getXML(int) - Method in class mgui.io.domestic.shapes.VolumeOutputOptions
 
getXML(int) - Method in class mgui.io.InterfaceIOOptions
 
getXML(int) - Method in class mgui.neuro.imaging.camino.CaminoProject
 
getXML(int) - Method in class mgui.numbers.MguiBoolean
 
getXML(int) - Method in class mgui.numbers.MguiDouble
 
getXML(int) - Method in class mgui.numbers.MguiFloat
 
getXML(int) - Method in class mgui.numbers.MguiInteger
 
getXML(int) - Method in class mgui.numbers.MguiLong
 
getXML(int) - Method in class mgui.numbers.MguiShort
 
getXML(int) - Method in class mgui.pipelines.InterfacePipeline
 
getXML(int) - Method in class mgui.pipelines.JavaProcess
 
getXML(int) - Method in class mgui.pipelines.NativeProcess
 
getXML(int) - Method in class mgui.pipelines.PipelineProcess
 
getXML(int) - Method in class mgui.pipelines.PipelineProcessInstance
 
getXML(int) - Method in class mgui.pipelines.PipelineTask
 
getXML(int) - Method in class mgui.pipelines.TaskParameter
 
getXML(int) - Method in class mgui.pipelines.TaskParameterInstance
 
getXML(int) - Method in class mgui.util.Colour
 
getXML(int) - Method in class mgui.util.Colour3f
 
getXML(int) - Method in class mgui.util.Colour4f
 
getXML(int, int) - Method in class mgui.interfaces.graphs.AbstractGraphNode
Get XML representation for the given index.
getXML(int, int, int) - Method in class mgui.interfaces.graphs.AbstractGraphEdge
Returns an XML representation for this edge given from and to indices.
getXML(int, int, int) - Method in class mgui.interfaces.graphs.DefaultGraphEdge
 
getXML(int, XMLObject.XMLType) - Method in class mgui.interfaces.shapes.InterfaceShape
 
getXML(int, XMLObject.XMLType) - Method in class mgui.interfaces.shapes.Mesh3DInt
 
getXML(int, XMLObject.XMLType) - Method in class mgui.interfaces.shapes.PointSet3DInt
 
getXML(int, XMLObject.XMLType) - Method in class mgui.interfaces.shapes.SectionSet3DInt
 
getXML(int, XMLObject.XMLType) - Method in class mgui.interfaces.shapes.ShapeModel3D
 
getXML(int, XMLObject.XMLType) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
 
getXMLCodedString(String) - Static method in class mgui.interfaces.xml.XMLFunctions
Encodes a string into an XML-friendly line by replacing angle brackets with their escape characters: < --> < > --> >
getXMLDecodedString(String) - Static method in class mgui.interfaces.xml.XMLFunctions
Decodes a string from an XML-friendly line by replacing angle brackets escape characters with their characters.
getXMLFileFilter() - Static method in class mgui.interfaces.xml.XMLFunctions
 
getXMLForAttributeObject(Object, int) - Static method in class mgui.interfaces.xml.XMLFunctions
Returns a string representing obj in an Attribute.
getXMLForObject(Object, int) - Static method in class mgui.interfaces.xml.XMLFunctions
 
getXMLForPoint2f(Point2f, int) - Static method in class mgui.interfaces.xml.XMLFunctions
 
getXMLFriendlyString(String) - Static method in class mgui.interfaces.xml.XMLFunctions
Returns a string which is an XML-friendly version of string, for insertion into a tag value.
getXMLHeader() - Static method in class mgui.interfaces.InterfaceEnvironment
 
getXMLHeader() - Static method in class mgui.interfaces.xml.XMLFunctions
Returns the XML header from the current environment
getXMLHeader(int) - Method in class mgui.io.domestic.shapes.SurfaceOutputOptions
 
getXMLInstance(Attributes) - Static method in class mgui.interfaces.attributes.Attribute
 
getXMLInstance(Attributes) - Static method in class mgui.interfaces.attributes.AttributeList
 
getXMLInstance(Attributes) - Static method in class mgui.interfaces.attributes.video.AttributeObjectVideoTask
 
getXMLInstance(Attributes) - Static method in class mgui.interfaces.graphics.video.RotateView3DTask
 
getXMLInstance(Attributes) - Static method in class mgui.interfaces.graphics.video.SetView3DTask
 
getXMLInstance(Attributes) - Static method in class mgui.interfaces.graphics.video.Video3D
 
getXMLInstance(Attributes) - Static method in class mgui.interfaces.graphics.View3D
 
getXMLInstance(Attributes) - Method in class mgui.interfaces.maps.Camera3D
 
getXMLInstance(Attributes) - Method in class mgui.interfaces.maps.ContinuousColourMap
 
getXMLInstance(Attributes) - Static method in class mgui.interfaces.maps.DiscreteColourMap
 
getXMLInstance(Attributes) - Method in class mgui.interfaces.maps.NameMap
 
getXMLInstance(Attributes) - Static method in class mgui.numbers.MguiBoolean
 
getXMLInstance(Attributes) - Static method in class mgui.numbers.MguiDouble
 
getXMLInstance(Attributes) - Static method in class mgui.numbers.MguiFloat
 
getXMLInstance(Attributes) - Static method in class mgui.numbers.MguiInteger
 
getXMLInstance(Attributes) - Static method in class mgui.numbers.MguiLong
 
getXMLInstance(Attributes) - Static method in class mgui.numbers.MguiShort
 
getXMLInstance(Attributes) - Static method in class mgui.util.Colour1f
 
getXMLInstance(Attributes) - Static method in class mgui.util.Colour2f
 
getXMLInstance(Attributes) - Static method in class mgui.util.Colour3f
 
getXMLInstance(Attributes) - Static method in class mgui.util.Colour4f
 
getXMLSchema() - Method in class mgui.datasources.DataConnection
 
getXMLSchema() - Method in class mgui.datasources.DataField
 
getXMLSchema() - Method in class mgui.datasources.DataQuery
 
getXMLSchema() - Method in class mgui.datasources.DataSource
 
getXMLSchema() - Method in class mgui.datasources.DataTable
 
getXMLSchema() - Method in class mgui.datasources.DataTableSet
 
getXMLSchema() - Method in class mgui.geometry.Shape2D
 
getXMLSchema() - Method in class mgui.geometry.Shape3D
 
getXMLSchema() - Method in class mgui.image.util.WindowedColourModel
 
getXMLSchema() - Method in class mgui.interfaces.attributes.Attribute
 
getXMLSchema() - Method in class mgui.interfaces.attributes.AttributeList
 
getXMLSchema() - Method in class mgui.interfaces.attributes.video.AttributeObjectVideoTask
 
getXMLSchema() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay
 
getXMLSchema() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
 
getXMLSchema() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
 
getXMLSchema() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow
 
getXMLSchema() - Method in class mgui.interfaces.graphics.video.RotateView3DTask
 
getXMLSchema() - Method in class mgui.interfaces.graphics.video.SetView3DTask
 
getXMLSchema() - Method in class mgui.interfaces.graphics.video.Video
 
getXMLSchema() - Method in class mgui.interfaces.graphics.View3D
 
getXMLSchema() - Method in class mgui.interfaces.graphs.AbstractGraphEdge
 
getXMLSchema() - Method in class mgui.interfaces.graphs.AbstractGraphNode
 
getXMLSchema() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
 
getXMLSchema() - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
 
getXMLSchema() - Method in class mgui.interfaces.InterfaceDisplayPanel
 
getXMLSchema() - Method in class mgui.interfaces.InterfaceWorkspace
 
getXMLSchema() - Method in class mgui.interfaces.layouts.InterfaceLayoutWindow
 
getXMLSchema() - Method in class mgui.interfaces.layouts.LayoutItem
 
getXMLSchema() - Method in class mgui.interfaces.maps.Camera3D
 
getXMLSchema() - Method in class mgui.interfaces.maps.ColourMap
 
getXMLSchema() - Method in class mgui.interfaces.maps.Map2D
 
getXMLSchema() - Method in class mgui.interfaces.maps.Map3D
 
getXMLSchema() - Method in class mgui.interfaces.maps.NameMap
 
getXMLSchema() - Method in class mgui.interfaces.pipelines.libraries.PipelineProcessLibrary
 
getXMLSchema() - Method in class mgui.interfaces.plots.InterfacePlotDisplay
 
getXMLSchema() - Method in class mgui.interfaces.projects.InterfaceProject
 
getXMLSchema() - Method in class mgui.interfaces.projects.ProjectDirectory
 
getXMLSchema() - Method in class mgui.interfaces.projects.ProjectInstance
 
getXMLSchema() - Method in class mgui.interfaces.shapes.InterfaceShape
 
getXMLSchema() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet
 
getXMLSchema() - Method in class mgui.interfaces.shapes.ShapeModel3D
 
getXMLSchema() - Method in class mgui.interfaces.shapes.VertexDataColumn
 
getXMLSchema() - Method in class mgui.interfaces.shapes.video.ChangeSectionVideoTask
 
getXMLSchema() - Method in class mgui.interfaces.tables.InterfaceDataTable
 
getXMLSchema() - Method in class mgui.interfaces.variables.VariableInt
 
getXMLSchema() - Method in interface mgui.interfaces.xml.XMLObject
Returns the XML schema for this object's XML representation
getXMLSchema() - Method in class mgui.io.InterfaceIOOptions
 
getXMLSchema() - Method in class mgui.neuro.imaging.camino.CaminoProject
 
getXMLSchema() - Method in class mgui.numbers.MguiBoolean
 
getXMLSchema() - Method in class mgui.numbers.MguiDouble
 
getXMLSchema() - Method in class mgui.numbers.MguiFloat
 
getXMLSchema() - Method in class mgui.numbers.MguiInteger
 
getXMLSchema() - Method in class mgui.numbers.MguiLong
 
getXMLSchema() - Method in class mgui.numbers.MguiShort
 
getXMLSchema() - Method in class mgui.pipelines.PipelineProcess
 
getXMLSchema() - Method in class mgui.pipelines.PipelineTask
 
getXMLSchema() - Method in class mgui.util.Colour
 
getXMLStrForType(XMLObject.XMLType) - Static method in class mgui.interfaces.xml.XMLFunctions
Returns a String corresponding to the XMLObject.XMLType.
getXMLTabbedString(String, int) - Static method in class mgui.interfaces.xml.XMLFunctions
Prepends all newline characters with the appropriate tab character, for friendlier XML output
getXMLType() - Method in class mgui.io.domestic.graphs.GraphFileWriter
Gets the current XML type for this writer.
getXMLTypeForStr(String) - Static method in class mgui.interfaces.xml.XMLFunctions
Returns the XMLObject.XMLType corresponding to string.
getXMLUntabbedString(String, int) - Static method in class mgui.interfaces.xml.XMLFunctions
Removes all new-line tabs from an XML input string
getXRange() - Method in class mgui.interfaces.plots.osp.InterfaceStripChart
 
getXRotation(Vector4f, float) - Static method in class mgui.geometry.util.GeometryFunctions
 
getY() - Method in class mgui.interfaces.plots.XYData
Returns the Y value for this pair (cloned)
getY(int) - Method in class mgui.geometry.Grid3D
 
getY(String) - Method in class mgui.interfaces.plots.PlotTimeSeriesDataSource
Returns the full set of Y data for the channel named name.
getYAngle(Vector3d) - Static method in class mgui.geometry.util.GeometryFunctions
 
getYAngle(Vector3f) - Static method in class mgui.geometry.util.GeometryFunctions
Returns angle of vector with y-axis.
getYColour() - Method in class mgui.interfaces.shapes.TensorVolume3DInt
 
getYData() - Method in class mgui.interfaces.io.DataBridgeXY
 
getYData() - Method in interface mgui.interfaces.io.DataInputStreamXY
Returns the Y data for all channels, as a list of type T.
getYData(int) - Method in class mgui.interfaces.io.DataBridgeXY
 
getYData(int) - Method in interface mgui.interfaces.io.DataInputStreamXY
Returns the Y data for the i'th channel, as type T.
getYData(String) - Method in class mgui.interfaces.io.DataBridgeNamedXY
 
getYData(String) - Method in interface mgui.interfaces.io.DataInputStreamNamedXY
Returns the Y data for the channel named channel, as a list of type T.
getYDim() - Method in class mgui.io.foreign.vol.VolFileLoader
Gets the Y dimension of the volume
getYRange() - Method in class mgui.interfaces.plots.osp.InterfaceStripChart
 
getYRotation(Vector4f) - Static method in class mgui.geometry.util.GeometryFunctions
Rotate this plane about the Y axis
getYRotation(Vector4f, float) - Static method in class mgui.geometry.util.GeometryFunctions
 
getZAngle(Vector3d) - Static method in class mgui.geometry.util.GeometryFunctions
 
getZAngle(Vector3f) - Static method in class mgui.geometry.util.GeometryFunctions
Returns angle of vector with z-axis.
getZColour() - Method in class mgui.interfaces.shapes.TensorVolume3DInt
 
getZDim() - Method in class mgui.io.foreign.vol.VolFileLoader
Gets the Z dimension of the volume
getZeros(int) - Static method in class mgui.numbers.MguiDouble
 
getZeroValue(int) - Static method in class mgui.image.util.WindowedColourModel
Returns the "zero" value for the given transfer type.
getZoom() - Method in class mgui.interfaces.maps.Map
 
getZoom() - Method in class mgui.interfaces.maps.Map2D
 
getZoom() - Method in class mgui.interfaces.maps.Map3D
 
getZRotation(Vector4f) - Static method in class mgui.geometry.util.GeometryFunctions
Rotate this plane about the Z axis
getZRotation(Vector4f, float) - Static method in class mgui.geometry.util.GeometryFunctions
 
GiftiInputOptions - Class in mgui.io.standard.gifti
Options specific for Gifti surfaces.
GiftiInputOptions() - Constructor for class mgui.io.standard.gifti.GiftiInputOptions
 
GiftiOutputOptions - Class in mgui.io.standard.gifti
Options for writing a surface to a Gifti format file.
GiftiOutputOptions() - Constructor for class mgui.io.standard.gifti.GiftiOutputOptions
 
GiftiOutputOptions.ByteOrder - Enum in mgui.io.standard.gifti
 
GiftiOutputOptions.ColumnFormat - Enum in mgui.io.standard.gifti
 
GiftiOutputOptions.GiftiEncoding - Enum in mgui.io.standard.gifti
 
GiftiSurfaceInDialogBox - Class in mgui.io.standard.gifti
Dialog box for inputting a GIFTI-format surface.
GiftiSurfaceInDialogBox() - Constructor for class mgui.io.standard.gifti.GiftiSurfaceInDialogBox
 
GiftiSurfaceInDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.standard.gifti.GiftiSurfaceInDialogBox
 
GiftiSurfaceLoader - Class in mgui.io.standard.gifti
Loads an XML-format GIFTI file.
GiftiSurfaceLoader() - Constructor for class mgui.io.standard.gifti.GiftiSurfaceLoader
 
GiftiSurfaceLoader(File) - Constructor for class mgui.io.standard.gifti.GiftiSurfaceLoader
 
GiftiSurfaceOutDialogBox - Class in mgui.io.standard.gifti
Opotions dialog box for a Gifti surface write operation.
GiftiSurfaceOutDialogBox() - Constructor for class mgui.io.standard.gifti.GiftiSurfaceOutDialogBox
 
GiftiSurfaceOutDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.standard.gifti.GiftiSurfaceOutDialogBox
 
GiftiSurfaceWriter - Class in mgui.io.standard.gifti
Writes a surface to Gifti format.
GiftiSurfaceWriter() - Constructor for class mgui.io.standard.gifti.GiftiSurfaceWriter
 
GiftiSurfaceWriter(File) - Constructor for class mgui.io.standard.gifti.GiftiSurfaceWriter
 
GiftiXMLHandler - Class in mgui.io.standard.gifti.xml
XML handler for GIFTI format surface files.
GiftiXMLHandler() - Constructor for class mgui.io.standard.gifti.xml.GiftiXMLHandler
 
GiftiXMLHandler(Mesh3DInt) - Constructor for class mgui.io.standard.gifti.xml.GiftiXMLHandler
Instantiate this handler with a pre-defined mesh.
GiftWrap - Class in au.edu.unsw.cse
 
GiftWrap(Point3dObject3d[]) - Constructor for class au.edu.unsw.cse.GiftWrap
 
GiftWrapQT - Class in au.edu.unsw.cse
 
GiftWrapQT(Point3dObject3d[]) - Constructor for class au.edu.unsw.cse.GiftWrapQT
 
glmax - Variable in class mgui.io.standard.nifti.Nifti1Dataset
 
glmin - Variable in class mgui.io.standard.nifti.Nifti1Dataset
 
gm_contains - Variable in class mgui.interfaces.neuro.CorticalThicknessOptions
 
gm_mesh - Variable in class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt
 
gradient_AP_A - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
 
gradient_IS_S - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
 
graph - Variable in class mgui.geometry.Graph2D
 
graph - Variable in class mgui.geometry.Graph3D
 
graph - Variable in class mgui.interfaces.graphs.InterfaceGraphDisplay
 
graph_layout - Variable in class mgui.interfaces.shapes.graphs.Graph2DInt
 
graph_map - Variable in class mgui.interfaces.plots.sgt.SgtPlotLayout
 
graph_mouse - Variable in class mgui.interfaces.tools.graphs.ToolGraphTransform
 
graph_names - Variable in class mgui.io.foreign.pajek.PajekGraphInputOptions
 
graph_type - Variable in class mgui.interfaces.plots.sgt.SgtPlotLayout
 
Graph2D - Class in mgui.geometry
Represents a graph as a 2D geometric shape.
Graph2D() - Constructor for class mgui.geometry.Graph2D
 
Graph2D(InterfaceAbstractGraph) - Constructor for class mgui.geometry.Graph2D
 
Graph2D(InterfaceAbstractGraph, HashMap<AbstractGraphNode, Point2f>) - Constructor for class mgui.geometry.Graph2D
 
Graph2DInt - Class in mgui.interfaces.shapes.graphs
Graph shape represented in R2.
Graph2DInt() - Constructor for class mgui.interfaces.shapes.graphs.Graph2DInt
 
Graph2DInt(Graph2D, Graph2DLayout<AbstractGraphNode, AbstractGraphEdge>) - Constructor for class mgui.interfaces.shapes.graphs.Graph2DInt
 
Graph2DInt(Graph2D, Graph2DLayout<AbstractGraphNode, AbstractGraphEdge>, HashMap<AbstractGraphNode, Integer>) - Constructor for class mgui.interfaces.shapes.graphs.Graph2DInt
 
Graph2DInt.DrawingTransformer - Class in mgui.interfaces.shapes.graphs
 
Graph2DInt.RenderServer - Class in mgui.interfaces.shapes.graphs
 
Graph2DLayout<V extends AbstractGraphNode,​E extends AbstractGraphEdge> - Class in mgui.interfaces.shapes.graphs.util
Layout for use with Graph2DInt.
Graph2DLayout(Graph<V, E>) - Constructor for class mgui.interfaces.shapes.graphs.util.Graph2DLayout
Creates an instance for the specified graph, with a default horizontal projection plane.
Graph2DLayout(Graph<V, E>, Plane3D) - Constructor for class mgui.interfaces.shapes.graphs.util.Graph2DLayout
 
Graph3D - Class in mgui.geometry
Represents a graph as a 3D geometric shape.
Graph3D() - Constructor for class mgui.geometry.Graph3D
 
Graph3D(InterfaceAbstractGraph) - Constructor for class mgui.geometry.Graph3D
 
Graph3D(InterfaceAbstractGraph, HashMap<AbstractGraphNode, Point3f>) - Constructor for class mgui.geometry.Graph3D
 
Graph3DInt - Class in mgui.interfaces.shapes.graphs
Represents a graph as a 3D shape.
Graph3DInt - mgui.io.domestic.graphs.GraphInputOptions.GraphLoadType
 
Graph3DInt() - Constructor for class mgui.interfaces.shapes.graphs.Graph3DInt
 
Graph3DInt(Graph3D) - Constructor for class mgui.interfaces.shapes.graphs.Graph3DInt
 
Graph3DInt(Graph3D, String) - Constructor for class mgui.interfaces.shapes.graphs.Graph3DInt
 
Graph3DInt(InterfaceAbstractGraph) - Constructor for class mgui.interfaces.shapes.graphs.Graph3DInt
 
Graph3DOutputOptions - Class in mgui.io.domestic.shapes
Output options for a Graph3DWriter
Graph3DOutputOptions() - Constructor for class mgui.io.domestic.shapes.Graph3DOutputOptions
 
Graph3DWriter - Class in mgui.io.domestic.shapes
Writer for a Graph3DInt object; default is to write using the domestic XML representation.
Graph3DWriter() - Constructor for class mgui.io.domestic.shapes.Graph3DWriter
 
GraphableObject - Interface in mgui.interfaces.graphs
 
GraphDisplay - mgui.interfaces.graphics.InterfaceGraphic.GraphicType
 
GraphEdgeLabelRenderer() - Constructor for class mgui.interfaces.graphs.util.GraphFunctions.GraphEdgeLabelRenderer
 
GraphException - Exception in mgui.interfaces.graphs
Exception for Graph objects.
GraphException(String) - Constructor for exception mgui.interfaces.graphs.GraphException
 
GraphFileLoader - Class in mgui.io.domestic.graphs
Abstract loader class for loading graphs.
GraphFileLoader() - Constructor for class mgui.io.domestic.graphs.GraphFileLoader
 
GraphFileWriter - Class in mgui.io.domestic.graphs
Abstract class for all graph writers.
GraphFileWriter(File) - Constructor for class mgui.io.domestic.graphs.GraphFileWriter
Constructor setting the output file.
GraphFunctions - Class in mgui.interfaces.graphs.util
Provides utility functions for Graphs.
GraphFunctions() - Constructor for class mgui.interfaces.graphs.util.GraphFunctions
 
GraphFunctions.ArrowVisibility - Class in mgui.interfaces.graphs.util
 
GraphFunctions.EdgeFactory - Class in mgui.interfaces.graphs.util
Factory to create graph edges.
GraphFunctions.EdgeVisibility - Class in mgui.interfaces.graphs.util
 
GraphFunctions.GraphEdgeLabelRenderer - Class in mgui.interfaces.graphs.util
Allows labels to be turned off.
GraphFunctions.GraphNodeLabelRenderer - Class in mgui.interfaces.graphs.util
Allows labels to be turned off.
GraphFunctions.NodeFactory - Class in mgui.interfaces.graphs.util
Factory to create graph nodes.
GraphFunctions.NodeVisibility - Class in mgui.interfaces.graphs.util
 
graphic_listeners - Variable in class mgui.interfaces.graphics.InterfaceGraphic
 
graphic_map - Variable in class mgui.interfaces.plots.mgui.PlotMap2D
 
Graphic2D - mgui.interfaces.graphics.InterfaceGraphic.GraphicType
 
Graphic2DGrid - Class in mgui.interfaces.graphics
Defines a 2D grid, for display in an InterfaceGraphic2D window.
Graphic2DGrid() - Constructor for class mgui.interfaces.graphics.Graphic2DGrid
 
Graphic2DMouseListener - Interface in mgui.interfaces.graphics
 
graphic3D - Variable in class mgui.interfaces.graphics.InterfaceCanvas3D
 
Graphic3D - mgui.interfaces.graphics.InterfaceGraphic.GraphicType
 
GraphicButton() - Constructor for class mgui.interfaces.graphics.InterfaceGraphicWindow.GraphicButton
 
GraphicEvent - Class in mgui.interfaces.graphics
Event on an InterfaceGraphic objects.
GraphicEvent(InterfaceGraphic<?>) - Constructor for class mgui.interfaces.graphics.GraphicEvent
 
GraphicEvent(InterfaceGraphic<?>, GraphicEvent.EventType) - Constructor for class mgui.interfaces.graphics.GraphicEvent
 
GraphicEvent.EventType - Enum in mgui.interfaces.graphics
 
GraphicListener - Interface in mgui.interfaces.graphics
Deprecated. 
graphicListeners - Variable in class mgui.interfaces.graphics.InterfaceGraphic2D
 
GraphicMouseListener - Interface in mgui.interfaces.graphics
Mouse listener on an InterfaceGraphic object.
GraphicPropertyListener - Interface in mgui.interfaces.graphics
 
GraphicsFunctions - Class in mgui.interfaces.graphics
 
GraphicsFunctions() - Constructor for class mgui.interfaces.graphics.GraphicsFunctions
 
graphicSourceChanged(GraphicEvent) - Method in interface mgui.interfaces.graphics.InterfaceGraphicListener
 
graphicSourceChanged(GraphicEvent) - Method in class mgui.interfaces.shapes.InterfaceSectionSetPanel
 
graphicSourceChanged(GraphicEvent) - Method in class mgui.interfaces.shapes.SectionSet2DInt
 
graphicSourceChanged(GraphicEvent) - Method in class mgui.interfaces.shapes.ShapeModel3D
 
graphicSourceChanged(GraphicEvent) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
 
graphicSourceChanged(GraphicEvent) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
 
graphicUpdated(GraphicEvent) - Method in interface mgui.interfaces.graphics.InterfaceGraphicListener
 
graphicUpdated(GraphicEvent) - Method in class mgui.interfaces.shapes.InterfaceSectionSetPanel
 
graphicUpdated(GraphicEvent) - Method in class mgui.interfaces.shapes.SectionSet2DInt
 
graphicUpdated(GraphicEvent) - Method in class mgui.interfaces.shapes.ShapeModel3D
 
graphicUpdated(GraphicEvent) - Method in class mgui.interfaces.shapes.ShapeSet3DInt
 
graphicUpdated(GraphicEvent) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
Respond to a window event; this is relevant for section nodes
GraphicWindowListEditor() - Constructor for class mgui.interfaces.graphics.InterfaceGraphicPanel.GraphicWindowListEditor
 
GraphicWindowListRenderer() - Constructor for class mgui.interfaces.graphics.InterfaceGraphicPanel.GraphicWindowListRenderer
 
GraphImage - Class in mgui.interfaces.graphs.shapes
Draws an image on a graph display.
GraphImage() - Constructor for class mgui.interfaces.graphs.shapes.GraphImage
 
GraphImage(BufferedImage, Point2f, Point2f) - Constructor for class mgui.interfaces.graphs.shapes.GraphImage
 
GraphInputOptions - Class in mgui.io.domestic.graphs
General options for loading a graph
GraphInputOptions() - Constructor for class mgui.io.domestic.graphs.GraphInputOptions
 
GraphInputOptions.GraphLoadType - Enum in mgui.io.domestic.graphs
 
graphListeners - Variable in class mgui.interfaces.graphs.InterfaceAbstractGraph
 
GraphNodeLabelRenderer() - Constructor for class mgui.interfaces.graphs.util.GraphFunctions.GraphNodeLabelRenderer
 
GraphNodeLabelRenderer(Renderer.VertexLabel.Position) - Constructor for class mgui.interfaces.graphs.util.GraphFunctions.GraphNodeLabelRenderer
 
GraphOutputOptions - Class in mgui.io.domestic.graphs
General options for writing a graph to file.
GraphOutputOptions() - Constructor for class mgui.io.domestic.graphs.GraphOutputOptions
 
graphs - Variable in class mgui.interfaces.InterfaceWorkspace
 
graphs - Variable in class mgui.io.domestic.graphs.GraphOutputOptions
 
graphs - Variable in class mgui.io.domestic.shapes.Graph3DOutputOptions
 
GraphShape - Class in mgui.interfaces.graphs.shapes
Abstract class for objects which implement VisualizationServer.Paintable; these can be used to render shapes on a graph display window.
GraphShape() - Constructor for class mgui.interfaces.graphs.shapes.GraphShape
 
GraphTreeCellRenderer - Class in mgui.interfaces.graphs.tree
 
GraphTreeCellRenderer() - Constructor for class mgui.interfaces.graphs.tree.GraphTreeCellRenderer
 
graphUpdated(NetworkGraphEvent) - Method in interface mgui.graphs.networks.NetworkGraphListener
 
graphUpdated(NetworkGraphEvent) - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
 
graphUpdated(InterfaceGraphEvent) - Method in class mgui.interfaces.graphs.InterfaceGraphDisplay
 
graphUpdated(InterfaceGraphEvent) - Method in interface mgui.interfaces.graphs.InterfaceGraphListener
 
GraphXMLFunctions - Class in mgui.io.domestic.graphs.xml
Utility class for XML operations involving graphs.
GraphXMLFunctions() - Constructor for class mgui.io.domestic.graphs.xml.GraphXMLFunctions
 
GREY_SCALE - Static variable in class mgui.interfaces.maps.ContinuousColourMap
 
GreyFileLoader - Class in mgui.io.standard.imaging
 
GreyFileLoader(File) - Constructor for class mgui.io.standard.imaging.GreyFileLoader
 
Greyscale - mgui.interfaces.plots.mgui.MatrixImagePlot.ColourType
 
grid - Variable in class mgui.interfaces.shapes.volume.VolumeMaskUpdater
 
Grid3D - Class in mgui.geometry
Holds a 3D array of values and a Box3D defining the distribution of these values in R3.
Grid3D() - Constructor for class mgui.geometry.Grid3D
 
Grid3D(int, int, int, int, Box3D) - Constructor for class mgui.geometry.Grid3D
 
Grid3D(int, int, int, Box3D) - Constructor for class mgui.geometry.Grid3D
 
Grid3D(Grid3D) - Constructor for class mgui.geometry.Grid3D
 
grids - Variable in class mgui.interfaces.graphics.InterfaceGraphic2D
 
GridSampleModel - Class in mgui.interfaces.shapes.util
This class represents image data which is stored in a band interleaved fashion and for which each sample of a pixel occupies one data element of the DataBuffer.
GridSampleModel(int, int, int, int) - Constructor for class mgui.interfaces.shapes.util.GridSampleModel
Constructs a BandedSampleModel with the specified parameters.
GridSampleModel(int, int, int, int, int[], int[]) - Constructor for class mgui.interfaces.shapes.util.GridSampleModel
Constructs a BandedSampleModel with the specified parameters.
gridType - Variable in class mgui.io.foreign.vol.VolumeInputOptions
 
GridVertexDataColumn - Class in mgui.interfaces.shapes.volume
Vertex data column defined for a Volume3DInt.
GridVertexDataColumn(String, Volume3DInt) - Constructor for class mgui.interfaces.shapes.volume.GridVertexDataColumn
 
GridVertexDataColumn(String, Volume3DInt, ArrayList<MguiNumber>) - Constructor for class mgui.interfaces.shapes.volume.GridVertexDataColumn
 
group_node - Variable in class mgui.interfaces.shapes.Shape3DInt
 
group_node - Variable in class mgui.interfaces.shapes.Volume3DInt
 
guessDataType(String) - Static method in class mgui.datasources.DataTypes
Returns a best guess for the data type of the given string.
gunzipAndTarFiles(File, File) - Static method in class mgui.io.util.IoFunctions
Decompresses the contents of the tar.gz archive in the file archive to target_dir.
Gzip - mgui.io.util.IoFunctions.FileType
 
GZIP_EXT - Static variable in class mgui.io.standard.nifti.Nifti1Dataset
 
gzip_xml - Variable in class mgui.io.domestic.shapes.ShapeModel3DOutputOptions
 
gzipAndTarFiles(List<File>, File) - Static method in class mgui.io.util.IoFunctions
Compresses file using tar/gzip compression.
gzipAndTarFiles(List<File>, File, String) - Static method in class mgui.io.util.IoFunctions
Compresses file using tar/gzip compression.
GzipBase64Binary - mgui.io.standard.gifti.GiftiOutputOptions.GiftiEncoding
 
gzipFile(File, File) - Static method in class mgui.io.util.IoFunctions
Compresses file using gzip compression.
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