Index
All Classes|All Packages
C
- c - Variable in class au.edu.unsw.cse.ColorControl
- C - Variable in class mgui.geometry.Mesh3D.MeshFace3D
- C - Variable in class mgui.geometry.Triangle3D
- cache - Variable in class mgui.datasources.LinkedDataStream
- cache - Variable in class mgui.interfaces.datasources.DataTableModel
- cached - Variable in class mgui.datasources.LinkedDataStream
- cal_max - Variable in class mgui.io.standard.nifti.Nifti1Dataset
- cal_min - Variable in class mgui.io.standard.nifti.Nifti1Dataset
- calcLastSec(int, int, long) - Method in class au.edu.unsw.cse.Viewer
-
Estimate mouse movement in last second
- call(String) - Static method in class mgui.command.CommandFunctions
-
Makes a call to the command console and returns immediately TODO: allow an ESC interrupt
- call(String, String) - Static method in class mgui.command.CommandFunctions
-
Makes a call to the command console and returns immediately.
- call(String, String, HashMap<String, String>) - Static method in class mgui.command.CommandFunctions
-
Makes a call to the command console and returns immediately.
- callAndWait(String) - Static method in class mgui.command.CommandFunctions
-
Calls
commandand blocks until it is complete - callAndWait(String, String) - Static method in class mgui.command.CommandFunctions
-
Calls
commandand blocks until it is complete - callAndWait(String, String, long) - Static method in class mgui.command.CommandFunctions
-
Calls
commandand blocks until it is complete - callAndWait(String, String, long, HashMap<String, String>) - Static method in class mgui.command.CommandFunctions
-
Calls
commandand blocks until it is complete - callAndWait(String, String, long, HashMap<String, String>, boolean) - Static method in class mgui.command.CommandFunctions
-
Calls
commandand blocks until it is complete - callMethod(String, String, ArrayList<?>, ProgressUpdater) - Method in class mgui.geometry.mesh.MeshEngine
- callMethod(String, String, ArrayList<?>, ProgressUpdater) - Method in class mgui.geometry.neuro.mesh.NeuroMeshEngine
- callMethod(String, String, ArrayList<?>, ProgressUpdater) - Method in class mgui.geometry.volume.VolumeEngine
- callMethod(String, String, ArrayList<?>, ProgressUpdater) - Method in class mgui.interfaces.graphics.util.DrawingEngine
- callMethod(String, String, ArrayList<?>, ProgressUpdater) - Method in class mgui.interfaces.shapes.util.ShapeEngine
- callMethod(String, String, ArrayList<?>, ProgressUpdater) - Method in interface mgui.interfaces.util.Engine
-
Calls the specified operation/method pair.
- callMethod(String, String, ProgressUpdater) - Method in class mgui.geometry.mesh.MeshEngine
- callMethod(String, String, ProgressUpdater) - Method in class mgui.geometry.neuro.mesh.NeuroMeshEngine
- callMethod(String, String, ProgressUpdater) - Method in class mgui.geometry.volume.VolumeEngine
- callMethod(String, String, ProgressUpdater) - Method in class mgui.interfaces.graphics.util.DrawingEngine
- callMethod(String, String, ProgressUpdater) - Method in class mgui.interfaces.shapes.util.ShapeEngine
- callMethod(String, String, ProgressUpdater) - Method in interface mgui.interfaces.util.Engine
-
Calls the specified operation/method pair.
- camera - Variable in class mgui.interfaces.graphics.View3D
- camera - Variable in class mgui.interfaces.maps.Map3D
- camera_start - Variable in class mgui.interfaces.graphics.video.RotateView3DTask
- camera_start - Variable in class mgui.interfaces.graphics.video.SetView3DTask
- Camera3D - Class in mgui.interfaces.maps
-
Represents a particular camera position in R3, defined by a center of rotation, line of sight vector, and a distance.
- Camera3D() - Constructor for class mgui.interfaces.maps.Camera3D
- Camera3D(String) - Constructor for class mgui.interfaces.maps.Camera3D
- Camera3D.CameraLightSource - Class in mgui.interfaces.maps
- Camera3DLight - Class in mgui.interfaces.maps
- Camera3DLight() - Constructor for class mgui.interfaces.maps.Camera3DLight
- Camera3DListener - Interface in mgui.interfaces.maps
- cameraAngleChanged(CameraEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- cameraAngleChanged(CameraEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphicPanel
- cameraAngleChanged(CameraEvent) - Method in interface mgui.interfaces.maps.Camera3DListener
- cameraAngleChanged(CameraEvent) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
- cameraChanged(CameraEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- cameraChanged(CameraEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphicPanel
- cameraChanged(CameraEvent) - Method in interface mgui.interfaces.maps.Camera3DListener
- cameraChanged(CameraEvent) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer
- CameraChanged - mgui.interfaces.events.CameraEvent.EventType
- CameraEvent - Class in mgui.interfaces.events
- CameraEvent(Camera3D) - Constructor for class mgui.interfaces.events.CameraEvent
- CameraEvent(Camera3D, CameraEvent.EventType) - Constructor for class mgui.interfaces.events.CameraEvent
- CameraEvent.EventType - Enum in mgui.interfaces.events
- CameraLightSource(DirectionalLight, Vector2d) - Constructor for class mgui.interfaces.maps.Camera3D.CameraLightSource
- camino_root - Static variable in class mgui.neuro.imaging.camino.CaminoEnvironment
- CaminoCatTask - Class in mgui.neuro.imaging.camino.tasks
-
Wraps class UnixFunctions.cat, in order to set correct directories from the Camino environment.
- CaminoCatTask() - Constructor for class mgui.neuro.imaging.camino.tasks.CaminoCatTask
- CaminoCopyTask - Class in mgui.neuro.imaging.camino.tasks
- CaminoCopyTask() - Constructor for class mgui.neuro.imaging.camino.tasks.CaminoCopyTask
- CaminoEnvironment - Class in mgui.neuro.imaging.camino
- CaminoEnvironment() - Constructor for class mgui.neuro.imaging.camino.CaminoEnvironment
- CaminoException - Exception in mgui.neuro.imaging.camino
- CaminoException(String) - Constructor for exception mgui.neuro.imaging.camino.CaminoException
- CaminoFunctions - Class in mgui.neuro.imaging.camino
- CaminoFunctions() - Constructor for class mgui.neuro.imaging.camino.CaminoFunctions
- CaminoPipelineLoader - Class in mgui.io.foreign.camino
- CaminoPipelineLoader() - Constructor for class mgui.io.foreign.camino.CaminoPipelineLoader
- CaminoPipelineLoader(File) - Constructor for class mgui.io.foreign.camino.CaminoPipelineLoader
- CaminoPipelineTree - Class in mgui.interfaces.neuro.imaging.camino
- CaminoPipelineTree(DefaultTreeModel) - Constructor for class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree
- CaminoPipelineTree(DefaultTreeModel, InterfaceCaminoPanel) - Constructor for class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree
- CaminoPipelineTree.PopupObject - Enum in mgui.interfaces.neuro.imaging.camino
- CaminoPipelineWriter - Class in mgui.io.foreign.camino
- CaminoPipelineWriter() - Constructor for class mgui.io.foreign.camino.CaminoPipelineWriter
- CaminoPipelineWriter(File) - Constructor for class mgui.io.foreign.camino.CaminoPipelineWriter
- CaminoProcess - Class in mgui.interfaces.neuro.imaging.camino
-
Extends
JavaProcessspecifically for Camino processes. - CaminoProcess(String, String) - Constructor for class mgui.interfaces.neuro.imaging.camino.CaminoProcess
- CaminoProcess(String, String, String) - Constructor for class mgui.interfaces.neuro.imaging.camino.CaminoProcess
- CaminoProcessDialogBox - Class in mgui.interfaces.neuro.imaging.camino
- CaminoProcessDialogBox() - Constructor for class mgui.interfaces.neuro.imaging.camino.CaminoProcessDialogBox
- CaminoProcessDialogBox(InterfaceOptions) - Constructor for class mgui.interfaces.neuro.imaging.camino.CaminoProcessDialogBox
- CaminoProcesses - Class in mgui.neuro.imaging.camino
- CaminoProcesses() - Constructor for class mgui.neuro.imaging.camino.CaminoProcesses
- CaminoProcessOptions - Class in mgui.interfaces.neuro.imaging.camino
- CaminoProcessOptions() - Constructor for class mgui.interfaces.neuro.imaging.camino.CaminoProcessOptions
- CaminoProject - Class in mgui.neuro.imaging.camino
- CaminoProject(String, File) - Constructor for class mgui.neuro.imaging.camino.CaminoProject
- CaminoProject(String, String) - Constructor for class mgui.neuro.imaging.camino.CaminoProject
- CaminoProjectDialogBox - Class in mgui.interfaces.neuro.imaging.camino
- CaminoProjectDialogBox() - Constructor for class mgui.interfaces.neuro.imaging.camino.CaminoProjectDialogBox
- CaminoProjectDialogBox(JFrame, InterfaceOptions) - Constructor for class mgui.interfaces.neuro.imaging.camino.CaminoProjectDialogBox
- CaminoProjectLoader - Class in mgui.io.foreign.camino
- CaminoProjectLoader() - Constructor for class mgui.io.foreign.camino.CaminoProjectLoader
- CaminoProjectLoader(File) - Constructor for class mgui.io.foreign.camino.CaminoProjectLoader
- CaminoProjectOptions - Class in mgui.interfaces.neuro.imaging.camino
- CaminoProjectOptions() - Constructor for class mgui.interfaces.neuro.imaging.camino.CaminoProjectOptions
- CaminoProjectOptions(CaminoProject) - Constructor for class mgui.interfaces.neuro.imaging.camino.CaminoProjectOptions
- CaminoProjectWriter - Class in mgui.io.foreign.camino
- CaminoProjectWriter() - Constructor for class mgui.io.foreign.camino.CaminoProjectWriter
- CaminoProjectWriter(File) - Constructor for class mgui.io.foreign.camino.CaminoProjectWriter
- CaminoProjectXMLHandler - Class in mgui.io.foreign.camino.xml
- CaminoProjectXMLHandler() - Constructor for class mgui.io.foreign.camino.xml.CaminoProjectXMLHandler
- CaminoTask - Class in mgui.neuro.imaging.camino
-
Simple port into apps.EntryPoint, which first resets the Camino environment.
- CaminoTask() - Constructor for class mgui.neuro.imaging.camino.CaminoTask
- CaminoTaskDialogBox - Class in mgui.interfaces.neuro.imaging.camino
- CaminoTaskDialogBox() - Constructor for class mgui.interfaces.neuro.imaging.camino.CaminoTaskDialogBox
- CaminoTaskDialogBox(JFrame, InterfaceOptions) - Constructor for class mgui.interfaces.neuro.imaging.camino.CaminoTaskDialogBox
- CaminoTaskOptions - Class in mgui.interfaces.neuro.imaging.camino
- CaminoTaskOptions() - Constructor for class mgui.interfaces.neuro.imaging.camino.CaminoTaskOptions
- CaminoTaskTreeNode - Class in mgui.neuro.imaging.camino
- CaminoTaskTreeNode(PipelineTask, JTree) - Constructor for class mgui.neuro.imaging.camino.CaminoTaskTreeNode
- cancel() - Method in class mgui.interfaces.gui.AbstractProgressUpdater
- cancel() - Method in class mgui.interfaces.gui.InterfaceProgressBar
- cancel() - Method in interface mgui.interfaces.ProgressUpdater
-
Cancels execution of the process monitored by this updater.
- Cancel_Input_Opt - mgui.interfaces.io.InterfaceFilePanel.Command
- Cancel_Output_Opt - mgui.interfaces.io.InterfaceFilePanel.Command
- cancelCellEditing() - Method in class mgui.interfaces.trees.AbstractTreeCellEditor
- cancelUpdate() - Method in class mgui.datasources.DataRecordSet
-
Cancels an update initiated by an AddNew or Edit process.
- cancelUpdate() - Method in class mgui.interfaces.datasources.DataTableModel
-
Cancels the current update
- canImport(TransferHandler.TransferSupport) - Method in class mgui.interfaces.pipelines.trees.PipelineTreeTransferHandler
- canQuery(InterfaceQueryObject) - Method in class mgui.interfaces.queries.InterfaceQuery
-
Determines whether this query instance can query the given
InterfaceQueryObject. - canQuery(InterfaceQueryObject) - Method in class mgui.interfaces.shapes.queries.InterfaceShapeQuery
- canvas3D - Variable in class mgui.interfaces.graphics.InterfaceCanvas3D
- canvas3D - Variable in class mgui.interfaces.graphics.InterfaceGraphic3D
- CanvasEvent - Class in mgui.interfaces.graphics
- CanvasEvent(Canvas3D) - Constructor for class mgui.interfaces.graphics.CanvasEvent
- CanvasListener - Interface in mgui.interfaces.graphics
- CaretAreaColourInDialogBox - Class in mgui.io.foreign.caret
- CaretAreaColourInDialogBox() - Constructor for class mgui.io.foreign.caret.CaretAreaColourInDialogBox
- CaretAreaColourInDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.foreign.caret.CaretAreaColourInDialogBox
- CaretAreaColourInOptions - Class in mgui.io.foreign.caret
- CaretAreaColourInOptions() - Constructor for class mgui.io.foreign.caret.CaretAreaColourInOptions
- CaretAreaColourLoader - Class in mgui.io.foreign.caret
-
A hack to read Caret area colour files.
- CaretAreaColourLoader() - Constructor for class mgui.io.foreign.caret.CaretAreaColourLoader
- CaretAreaColourLoader(File) - Constructor for class mgui.io.foreign.caret.CaretAreaColourLoader
- CaretAreaColourOutDialogBox - Class in mgui.io.foreign.caret
- CaretAreaColourOutDialogBox() - Constructor for class mgui.io.foreign.caret.CaretAreaColourOutDialogBox
- CaretAreaColourOutDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.foreign.caret.CaretAreaColourOutDialogBox
- CaretAreaColourOutputOptions - Class in mgui.io.foreign.caret
-
Options for outputting a
DiscreteColourMapas a Caret areacolor file. - CaretAreaColourOutputOptions() - Constructor for class mgui.io.foreign.caret.CaretAreaColourOutputOptions
- CaretAreaColourWriter - Class in mgui.io.foreign.caret
-
Writes a
DiscreteColourMapto a Caret area colour file, which associates colours (RGB) with names. - CaretAreaColourWriter() - Constructor for class mgui.io.foreign.caret.CaretAreaColourWriter
- CaretMetricInDialogBox - Class in mgui.io.foreign.caret
- CaretMetricInDialogBox() - Constructor for class mgui.io.foreign.caret.CaretMetricInDialogBox
- CaretMetricInDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.foreign.caret.CaretMetricInDialogBox
- CaretMetricInOptions - Class in mgui.io.foreign.caret
- CaretMetricInOptions() - Constructor for class mgui.io.foreign.caret.CaretMetricInOptions
- CaretMetricLoader - Class in mgui.io.foreign.caret
- CaretMetricLoader() - Constructor for class mgui.io.foreign.caret.CaretMetricLoader
- CaretMetricLoader(File) - Constructor for class mgui.io.foreign.caret.CaretMetricLoader
- CaretMetricLoader.Header - Class in mgui.io.foreign.caret
- CaretMetricOptions - Class in mgui.io.foreign.caret
-
Options for a Caret metric file.
- CaretMetricOptions() - Constructor for class mgui.io.foreign.caret.CaretMetricOptions
- CaretMetricOptionsDialog - Class in mgui.io.foreign.caret
- CaretMetricOptionsDialog(JFrame, InterfaceDialogUpdater, int) - Constructor for class mgui.io.foreign.caret.CaretMetricOptionsDialog
- CaretPaintInDialogBox - Class in mgui.io.foreign.caret
- CaretPaintInDialogBox() - Constructor for class mgui.io.foreign.caret.CaretPaintInDialogBox
- CaretPaintInDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.foreign.caret.CaretPaintInDialogBox
- CaretPaintInOptions - Class in mgui.io.foreign.caret
- CaretPaintInOptions() - Constructor for class mgui.io.foreign.caret.CaretPaintInOptions
- CaretPaintLoader - Class in mgui.io.foreign.caret
-
Loads a Caret Paint file From Caret site: tag-version 1 tag-number-of-nodes 71723 tag-number-of-columns 5 tag-title tag-number-of-paint-names 148 tag-column-name 0 Lobes tag-column-name 1 Geography tag-column-name 2 Functional Stuff tag-column-name 3 Brodmann tag-column-name 4 Modality tag-BEGIN-DATA 0 ??? 1 SUL 2 DEEP_SUL ...
- CaretPaintLoader() - Constructor for class mgui.io.foreign.caret.CaretPaintLoader
- CaretPaintLoader(File) - Constructor for class mgui.io.foreign.caret.CaretPaintLoader
- CaretPaintLoader(URL) - Constructor for class mgui.io.foreign.caret.CaretPaintLoader
- CaretPaintLoader.Header - Class in mgui.io.foreign.caret
- CaretPaintOptions - Class in mgui.io.foreign.caret
-
Deprecated.use CaretPaintInOptions or CaretPaintOutOptions
- CaretPaintOptions() - Constructor for class mgui.io.foreign.caret.CaretPaintOptions
-
Deprecated.
- CaretPaintOptionsDialog - Class in mgui.io.foreign.caret
-
Deprecated.use CaretPaintInDialogBox or CaretPaintOutDialogBox
- CaretPaintOptionsDialog(JFrame, InterfaceDialogUpdater) - Constructor for class mgui.io.foreign.caret.CaretPaintOptionsDialog
-
Deprecated.
- CaretPaintOutOptions - Class in mgui.io.foreign.caret
- CaretPaintOutOptions() - Constructor for class mgui.io.foreign.caret.CaretPaintOutOptions
- CaretPaintWriter - Class in mgui.io.foreign.caret
-
Writes a set of vertex-wise data columns to Caret paint files, binary format version 1.
- CaretPaintWriter() - Constructor for class mgui.io.foreign.caret.CaretPaintWriter
- CaretSurfaceInDialogBox - Class in mgui.io.foreign.caret
-
Dialog box for inputting a Caret format surface, comprised of "topo" and "coord" files.
- CaretSurfaceInDialogBox() - Constructor for class mgui.io.foreign.caret.CaretSurfaceInDialogBox
- CaretSurfaceInDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.foreign.caret.CaretSurfaceInDialogBox
- CaretSurfaceInfo - Class in mgui.io.foreign.caret
- CaretSurfaceInfo() - Constructor for class mgui.io.foreign.caret.CaretSurfaceInfo
- CaretSurfaceInOptions - Class in mgui.io.foreign.caret
-
Options specifying how to read a Caret surface
- CaretSurfaceInOptions() - Constructor for class mgui.io.foreign.caret.CaretSurfaceInOptions
- CaretSurfaceLoader - Class in mgui.io.foreign.caret
-
Loads a Caret surface from topology and coordinate files, in either binary or ASCII format.
- CaretSurfaceLoader() - Constructor for class mgui.io.foreign.caret.CaretSurfaceLoader
- CaretSurfaceLoader(File) - Constructor for class mgui.io.foreign.caret.CaretSurfaceLoader
-
Instantiates a new loader with the given topo file, with format
FORMAT_BINARY. - CaretSurfaceLoader(File, File) - Constructor for class mgui.io.foreign.caret.CaretSurfaceLoader
-
Instantiates a new loader with the given topo and coord files, with format
FORMAT_BINARY. - CaretSurfaceLoader(File, File, int) - Constructor for class mgui.io.foreign.caret.CaretSurfaceLoader
-
Instantiates a new loader with the given topo and coord files, and the specified format (one of
FORMAT_BINARY=0, FORMAT_ASCII=1). - CaretSurfaceOutDialogBox - Class in mgui.io.foreign.caret
-
Opotions dialog box for a Caret surface write operation.
- CaretSurfaceOutDialogBox() - Constructor for class mgui.io.foreign.caret.CaretSurfaceOutDialogBox
- CaretSurfaceOutDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.foreign.caret.CaretSurfaceOutDialogBox
- CaretSurfaceOutOptions - Class in mgui.io.foreign.caret
- CaretSurfaceOutOptions() - Constructor for class mgui.io.foreign.caret.CaretSurfaceOutOptions
- CaretSurfaceWriter - Class in mgui.io.foreign.caret
-
Writes a mesh to Caret format (two files, topo and coord)
- CaretSurfaceWriter() - Constructor for class mgui.io.foreign.caret.CaretSurfaceWriter
- CaretSurfaceWriter(File) - Constructor for class mgui.io.foreign.caret.CaretSurfaceWriter
- CaretSurfaceWriter(File, File) - Constructor for class mgui.io.foreign.caret.CaretSurfaceWriter
- CaretSurfaceWriter(CaretSurfaceOutOptions) - Constructor for class mgui.io.foreign.caret.CaretSurfaceWriter
- Cartesian - mgui.interfaces.plots.sgt.SgtPlotLayout.GraphType
- cat() - Constructor for class mgui.interfaces.unix.UnixFunctions.cat
- categories - Variable in class mgui.interfaces.layouts.CategoryLayout
- categories - Variable in class mgui.interfaces.tools.InterfaceTool2DPanel
-
Deprecated.
- category - Variable in class mgui.interfaces.layouts.CategoryLayoutConstraints
- category - Variable in class mgui.interfaces.layouts.CategoryTitle
- category_attributes - Variable in class mgui.interfaces.attributes.AttributeList
- categoryHeight - Variable in class mgui.interfaces.layouts.CategoryLayout
- CategoryLayout - Class in mgui.interfaces.layouts
-
Extends
LineLayoutto provide collapsible categories. - CategoryLayout() - Constructor for class mgui.interfaces.layouts.CategoryLayout
- CategoryLayout(int, int, int, int) - Constructor for class mgui.interfaces.layouts.CategoryLayout
- CategoryLayout(int, int, int, int, int) - Constructor for class mgui.interfaces.layouts.CategoryLayout
- CategoryLayoutConstraints - Class in mgui.interfaces.layouts
-
Extension of
to include a category identifier String. - CategoryLayoutConstraints() - Constructor for class mgui.interfaces.layouts.CategoryLayoutConstraints
- CategoryLayoutConstraints(String, int, int, double, double, double) - Constructor for class mgui.interfaces.layouts.CategoryLayoutConstraints
- CategoryObject - Interface in mgui.interfaces.layouts
- categorySpacing - Variable in class mgui.interfaces.layouts.CategoryLayout
- CategoryTitle - Class in mgui.interfaces.layouts
-
A title for a category using the
CategoryLayoutlayout. - CategoryTitle(String) - Constructor for class mgui.interfaces.layouts.CategoryTitle
- CategoryTitle(String, String) - Constructor for class mgui.interfaces.layouts.CategoryTitle
- CategoryTitle(String, String, boolean) - Constructor for class mgui.interfaces.layouts.CategoryTitle
- ceil(double, double) - Static method in class mgui.util.MathFunctions
-
Rounds m up to the next multiple of n
- ceilToOdd(double) - Static method in class mgui.numbers.NumberFunctions
- CELL_WIDTH - Static variable in class mgui.interfaces.attributes.tree.AttributeTreeCellRenderer
- center - Variable in class mgui.geometry.mesh.EnergySphere
- center - Variable in class mgui.geometry.Sphere3D
- center_of_mass - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
- CenterChanged - mgui.interfaces.events.CameraEvent.EventType
- CENTERED - Static variable in class mgui.util.ImageFunctions
- centerOfRotation - Variable in class mgui.interfaces.maps.Camera3D
- centerOnPoint(Point2f) - Method in class mgui.interfaces.maps.Map2D
- centerOnPoint(Point3f) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
- centerPt - Variable in class mgui.geometry.Circle2D
- centerPt - Variable in class mgui.interfaces.maps.Map3D
- centerPt - Variable in class mgui.interfaces.shapes.Shape2DInt
- centerPt - Variable in class mgui.interfaces.shapes.Shape3DInt
- centerSectionAt(Point2f) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
-
Centers the section at the specified 2D point
- centerSectionAt(Point3f) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
-
Centers the section at the specified 3D point, projected onto its plane
- centre - Variable in class au.edu.unsw.cse.Object3dAdaptor
- centre() - Method in interface au.edu.unsw.cse.Object3d
- centre() - Method in class au.edu.unsw.cse.Object3dAdaptor
- centre() - Method in class au.edu.unsw.cse.Point3dObject3d
- change_listeners - Variable in class mgui.interfaces.stats.HistogramPlot
- changed_names - Variable in class mgui.interfaces.datasources.EditDataTableDialog
- changedUpdate(DocumentEvent) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
- changedUpdate(DocumentEvent) - Method in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel
-
DocumentListener methods
- ChangeSectionVideoTask - Class in mgui.interfaces.shapes.video
-
Video task which changes the current section, either once or multiple times over an interval.
- ChangeSectionVideoTask() - Constructor for class mgui.interfaces.shapes.video.ChangeSectionVideoTask
- ChangeSectionVideoTask(int, int, InterfaceGraphic2D, int, int) - Constructor for class mgui.interfaces.shapes.video.ChangeSectionVideoTask
-
Instantiates this task with the given arguments.
- ChangeSectionVideoTaskDialogPanel - Class in mgui.interfaces.shapes.video
-
Dialog panel for a ChangeSectionVideoTask.
- ChangeSectionVideoTaskDialogPanel() - Constructor for class mgui.interfaces.shapes.video.ChangeSectionVideoTaskDialogPanel
- ChangeSectionVideoTaskDialogPanel(ChangeSectionVideoTask) - Constructor for class mgui.interfaces.shapes.video.ChangeSectionVideoTaskDialogPanel
- channels - Variable in class mgui.image.util.WindowedColourModel
- CHAR - Static variable in class mgui.datasources.DataTypes
- characters(char[], int, int) - Method in class mgui.io.domestic.attributes.AttributeXMLHandler
- characters(char[], int, int) - Method in class mgui.io.domestic.datasources.DataSourceXMLHandler
- characters(char[], int, int) - Method in class mgui.io.domestic.network.CorticalNetworkXMLHandler
- characters(char[], int, int) - Method in class mgui.io.domestic.pipelines.PipelineProcessLibraryXMLHandler
- characters(char[], int, int) - Method in class mgui.io.domestic.pipelines.PipelineXMLHandler
- characters(char[], int, int) - Method in class mgui.io.domestic.pipelines.TaskXMLHandler
- characters(char[], int, int) - Method in class mgui.io.domestic.shapes.xml.InterfaceShapeXMLHandler
- characters(char[], int, int) - Method in class mgui.io.domestic.shapes.xml.SectionSet3DXMLHandler
- characters(char[], int, int) - Method in class mgui.io.domestic.shapes.xml.ShapeModel3DXMLHandler
- characters(char[], int, int) - Method in class mgui.io.domestic.shapes.xml.ShapeSet2DXMLHandler
- characters(char[], int, int) - Method in class mgui.io.domestic.shapes.xml.ShapeSet3DXMLHandler
- characters(char[], int, int) - Method in class mgui.io.foreign.camino.xml.CaminoProjectXMLHandler
- characters(char[], int, int) - Method in class mgui.io.standard.gifti.xml.GiftiXMLHandler
- checkHeader() - Method in class mgui.io.standard.nifti.Nifti1Dataset
-
Check the header fields for valid settings
- child_left - Variable in class mgui.geometry.util.K3DBinaryTree.K3DNode
- child_right - Variable in class mgui.geometry.util.K3DBinaryTree.K3DNode
- child3D - Variable in class mgui.interfaces.shapes.Shape2DInt
- children2D - Variable in class mgui.interfaces.shapes.Shape3DInt
- childSets - Variable in class mgui.interfaces.graphics.InterfaceGraphic2D
- CHK_ALLSECT - Static variable in class mgui.morph.sections.InterfaceMorphPanel
- CHK_ALLSECT - Static variable in class mgui.morph.sections.InterfaceMorphPanel2
- CHK_ALLSELSET - Static variable in class mgui.morph.sections.InterfaceMorphPanel
- CHK_ALLSELSET - Static variable in class mgui.morph.sections.InterfaceMorphPanel2
- CHK_ALLSHAPES - Static variable in class mgui.morph.sections.InterfaceMorphPanel
- CHK_ALLSHAPES - Static variable in class mgui.morph.sections.InterfaceMorphPanel2
- CHK_SEL - Static variable in class mgui.interfaces.shapes.mesh.InterfaceMeshPanel
- CHK_SELSET - Static variable in class mgui.morph.sections.InterfaceMorphPanel
- CHK_SELSET - Static variable in class mgui.morph.sections.InterfaceMorphPanel2
- CHK_SPECSECT - Static variable in class mgui.morph.sections.InterfaceMorphPanel
- CHK_SPECSECT - Static variable in class mgui.morph.sections.InterfaceMorphPanel2
- chkAddToCurrent - Variable in class mgui.io.domestic.shapes.PointSet3DInputDialogBox
- chkAddToCurrent - Variable in class mgui.io.domestic.shapes.VectorSet3DInputDialogBox
- chkMergeShapes - Variable in class mgui.io.domestic.shapes.SurfaceInputDialogBox
- chkNewShapeSet - Variable in class mgui.io.domestic.shapes.PolygonSet3DInputDialogBox
- ci - Variable in class au.edu.unsw.cse.QuadMesh3d
- circle - Variable in class mgui.morph.sections.RadialRep2D
- Circle2D - Class in mgui.geometry
-
Represents a 2D circle.
- Circle2D() - Constructor for class mgui.geometry.Circle2D
- Circle2D(float, float, float) - Constructor for class mgui.geometry.Circle2D
- Circle2D(Point2f, float) - Constructor for class mgui.geometry.Circle2D
- Circle2DInt - Class in mgui.interfaces.shapes
- Circle2DInt() - Constructor for class mgui.interfaces.shapes.Circle2DInt
- Circle2DInt(Circle2D) - Constructor for class mgui.interfaces.shapes.Circle2DInt
- cj - Variable in class au.edu.unsw.cse.QuadMesh3d
- ClassFunctions - Class in mgui.classes
-
Set of functions on classes
- ClassFunctions() - Constructor for class mgui.classes.ClassFunctions
- className - Variable in class mgui.datasources.DataSourceDriver
- clean() - Method in class mgui.interfaces.AbstractInterfaceObject
- clean() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
- clean() - Method in class mgui.interfaces.InterfaceOptions
- clean() - Method in class mgui.interfaces.InterfacePanel
- clean() - Method in class mgui.interfaces.io.InterfaceFile
- clean() - Method in class mgui.interfaces.plots.mgui.PlotMap2D
- clean() - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
- clean() - Method in class mgui.interfaces.queries.InterfaceQuery
- clean() - Method in class mgui.interfaces.tables.InterfaceTableModel
- clean() - Method in interface mgui.interfaces.util.CleanableObject
-
Instructs this object to search its members for any object which has been destroyed, and release the pointer to it.
- clean() - Method in class mgui.pipelines.PipelineProcess
- clean() - Method in class mgui.pipelines.TaskParameterInstance
- CleanableObject - Interface in mgui.interfaces.util
-
An object that can be cleaned; i.e., for destroyed fields which should be released
- cleanInterfaceObject(InterfaceObject) - Static method in class mgui.interfaces.util.InterfaceFunctions
-
Cleans up the members of this object; i.e., searches for destroyed objects and releases them.
- cleanMesh(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
- cleanTreeNodes() - Method in class mgui.interfaces.shapes.InterfaceShape
-
TREE NODE STUFF
- cleanTreeNodes() - Method in class mgui.interfaces.shapes.ShapeModel3D
- cleanUpPanel() - Method in class mgui.interfaces.InterfacePanel
-
Cleans up the panel's data when it loses focus.
- cleanUpPanel() - Method in class mgui.interfaces.io.InterfaceFilePanel
- cleanUpPanel() - Method in class mgui.interfaces.neuro.InterfaceCorticalThicknessPanel
- cleanUpPanel() - Method in class mgui.interfaces.shapes.InterfaceShapesPanel
- cleanUpPanel() - Method in class mgui.interfaces.shapes.mesh.InterfaceMeshPanel
- cleanUpPanel() - Method in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
- clear() - Method in class au.edu.unsw.cse.View3d
- clear() - Method in class mgui.geometry.Mesh3D
- clear() - Method in class mgui.geometry.PointSet3D
- clear() - Method in class mgui.interfaces.Clipboard
-
Clears the current content
- clear() - Method in class mgui.interfaces.maps.NameMap
- clear() - Method in class mgui.interfaces.queries.QueryResultPanel
- clear() - Method in class mgui.interfaces.shapes.InterfaceShapesPanel.VertexSelectionTableModel
- clear() - Method in class mgui.interfaces.shapes.mesh.VertexSelection
- clear2DChildren() - Method in class mgui.interfaces.shapes.Shape3DInt
-
Clears the currently set 2D children for this shape
- clearCache() - Method in class mgui.datasources.LinkedDataStream
- clearCurrentTool() - Method in class mgui.interfaces.tools.shapes.util.RulerDialog
-
Clears the current tool, allowing other tools to use it
- clearData() - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout
-
Removes all graph data from this layout.
- clearListeners() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow.GraphicButton
- clearMask(String) - Method in class mgui.interfaces.shapes.Volume3DInt
- clearNodes() - Method in class mgui.interfaces.tools.shapes.ToolQueryShape3D
- clearNodes() - Method in class mgui.interfaces.tools.shapes.ToolSelectShape3D
- clearPostRenderShapes() - Method in class mgui.interfaces.graphics.InterfaceCanvas3D
- clearPostRenderShapes() - Method in class mgui.interfaces.graphics.PostRenderingCanvas3D
- clearResults() - Method in class mgui.interfaces.queries.InterfaceQuery
-
Clears the results currently stored in this query.
- clearTempShapes() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D
-
Remove all temporary shapes from the stack
- clearTempShapes() - Method in class mgui.interfaces.shapes.ShapeModel3D
- clearVertices() - Method in class mgui.interfaces.shapes.queries.InterfaceShapeQuery
- clearWindows() - Method in class mgui.interfaces.shapes.ShapeSet3DInt
- clearWorkingSelection() - Method in class mgui.interfaces.shapes.ShapeModel3D
- clip_planes - Variable in class mgui.interfaces.shapes.SectionSet3DInt
- Clipboard - Class in mgui.interfaces
-
Acts as a clipboard for the current InterfaceSession.
- Clipboard() - Constructor for class mgui.interfaces.Clipboard
- Clipboard.Item - Class in mgui.interfaces
- ClipModified - mgui.interfaces.shapes.util.ShapeEvent.EventType
- ClipPlane - Class in mgui.interfaces.shapes.util
-
Class specifies a clipping region around a plane, with back and front clip distances.
- ClipPlane(Plane3D, float, float) - Constructor for class mgui.interfaces.shapes.util.ClipPlane
- CLOB - Static variable in class mgui.datasources.DataTypes
- clock - Variable in class mgui.interfaces.graphics.video.Video
- clock - Variable in class mgui.models.dynamic.DynamicModelEngine
- clock - Variable in class mgui.models.environments.AbstractEnvironmentDataSource
- clock - Variable in class mgui.models.environments.SimpleEnvironment
- clock - Variable in class mgui.models.updaters.PulseTrainUpdater
- clock - Variable in class mgui.neuro.components.AbstractNeuroComponent
- clock - Variable in class mgui.neuro.updaters.PulseTrainUpdater
- clock_start - Static variable in class mgui.command.CommandInterpreter
- ClockChanged(VideoEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphicPanel
- ClockChanged(VideoEvent) - Method in interface mgui.interfaces.graphics.video.VideoListener
- ClockLagged(VideoEvent, long) - Method in class mgui.interfaces.graphics.InterfaceGraphicPanel
- ClockLagged(VideoEvent, long) - Method in interface mgui.interfaces.graphics.video.VideoListener
- ClockStarted(VideoEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphicPanel
- ClockStarted(VideoEvent) - Method in interface mgui.interfaces.graphics.video.VideoListener
- ClockStopped(VideoEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphicPanel
- ClockStopped(VideoEvent) - Method in interface mgui.interfaces.graphics.video.VideoListener
- clockwise - Variable in class mgui.interfaces.util.VerticalLabelUI
- Clockwise - mgui.geometry.polygon.PolygonFunctions.PolyDirection
- clone() - Method in class au.edu.unsw.cse.View3d
- clone() - Method in class mgui.datasources.DataConnection
- clone() - Method in class mgui.datasources.DataField
- clone() - Method in class mgui.datasources.DataIndex
- clone() - Method in class mgui.datasources.DataSource
- clone() - Method in class mgui.datasources.DataSourceDriver
- clone() - Method in class mgui.datasources.DataTable
- clone() - Method in class mgui.datasources.mysql.MySQLDriver
- clone() - Method in class mgui.datasources.odbc.JdbcOdbcDriver
- clone() - Method in class mgui.datasources.postgresql.PostgreSQLDriver
- clone() - Method in class mgui.datasources.tinysql.TinySQLDriver
- clone() - Method in class mgui.geometry.Box3D
- clone() - Method in class mgui.geometry.Circle2D
- clone() - Method in class mgui.geometry.Grid3D
- clone() - Method in class mgui.geometry.LineSegment2D
- clone() - Method in class mgui.geometry.Mesh3D
- clone() - Method in class mgui.geometry.Plane3D
- clone() - Method in class mgui.geometry.PointSet3D
-
T must be 4 x 4 transformation matrix public boolean transform(Matrix T){ for (int i = 0; i < n; i++){ Matrix node = arMath.getMatrixFromPoint3d(new Point3d(getNode(i))); node = node.transpose().times(T); Point3f p = new Point3f(arMath.getPoint3dFromMatrix(node)); this.setNode(i, p); } }
- clone() - Method in class mgui.geometry.Polygon2D
- clone() - Method in class mgui.geometry.Radius2D
- clone() - Method in class mgui.geometry.Rect2D
- clone() - Method in class mgui.geometry.Shape2D
- clone() - Method in class mgui.geometry.Shape3D
- clone() - Method in class mgui.geometry.Text2D
- clone() - Method in class mgui.geometry.Vector3D
- clone() - Method in class mgui.image.util.WindowedColourModel
- clone() - Method in class mgui.interfaces.attributes.Attribute
- clone() - Method in class mgui.interfaces.attributes.AttributeList
- clone() - Method in class mgui.interfaces.attributes.tree.AttributeTreeNode
- clone() - Method in class mgui.interfaces.attributes.video.AttributeObjectVideoTask
- clone() - Method in class mgui.interfaces.graphics.video.RotateView3DTask
- clone() - Method in class mgui.interfaces.graphics.video.SetView3DTask
- clone() - Method in class mgui.interfaces.graphics.video.VideoTask
- clone() - Method in class mgui.interfaces.graphs.AbstractGraphEdge
- clone() - Method in class mgui.interfaces.graphs.AbstractGraphNode
- clone() - Method in class mgui.interfaces.graphs.DefaultGraph
- clone() - Method in class mgui.interfaces.graphs.DefaultGraphEdge
- clone() - Method in class mgui.interfaces.graphs.DefaultGraphNode
- clone() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph
- clone() - Method in class mgui.interfaces.maps.ColourMap
- clone() - Method in class mgui.interfaces.maps.ContinuousColourBar
- clone() - Method in class mgui.interfaces.maps.ContinuousColourMap
- clone() - Method in class mgui.interfaces.maps.DiscreteColourMap
- clone() - Method in class mgui.interfaces.projects.InterfaceProject
- clone() - Method in class mgui.interfaces.projects.ProjectDataItem
- clone() - Method in class mgui.interfaces.projects.ProjectDirectory
- clone() - Method in class mgui.interfaces.shapes.Image2DInt
- clone() - Method in class mgui.interfaces.shapes.LPolygon2DInt
- clone() - Method in class mgui.interfaces.shapes.Polygon2DInt
- clone() - Method in class mgui.interfaces.shapes.Rect2DInt
- clone() - Method in class mgui.interfaces.shapes.Shape2DInt
- clone() - Method in class mgui.interfaces.shapes.trees.Shape2DTreeNode
- clone() - Method in class mgui.interfaces.shapes.trees.Shape3DTreeNode
- clone() - Method in class mgui.interfaces.shapes.video.ChangeSectionVideoTask
- clone() - Method in class mgui.interfaces.tools.datasources.ToolDataSource
- clone() - Method in class mgui.interfaces.tools.dialogs.DialogTool
- clone() - Method in class mgui.interfaces.tools.graphics.Tool2D
- clone() - Method in class mgui.interfaces.tools.graphics.Tool3D
- clone() - Method in class mgui.interfaces.tools.graphics.ToolDefine3DGrid2D
- clone() - Method in class mgui.interfaces.tools.graphics.ToolDZoom2D
- clone() - Method in class mgui.interfaces.tools.graphics.ToolMouseOrbit3D
- clone() - Method in class mgui.interfaces.tools.graphics.ToolPan2D
- clone() - Method in class mgui.interfaces.tools.graphics.ToolWindowZoom2D
- clone() - Method in class mgui.interfaces.tools.graphics.ToolZoomExt2D
- clone() - Method in class mgui.interfaces.tools.graphs.ToolGraph
- clone() - Method in class mgui.interfaces.tools.graphs.ToolGraphImage
- clone() - Method in class mgui.interfaces.tools.graphs.ToolGraphTransform
- clone() - Method in class mgui.interfaces.tools.layouts.ToolLayout2D
- clone() - Method in class mgui.interfaces.tools.plots.ToolPlot
- clone() - Method in class mgui.interfaces.tools.shapes.ToolCreateEllipse2D
- clone() - Method in class mgui.interfaces.tools.shapes.ToolCreateImage2D
- clone() - Method in class mgui.interfaces.tools.shapes.ToolCreateImage3D
- clone() - Method in class mgui.interfaces.tools.shapes.ToolCreateMeshFromPolylines
- clone() - Method in class mgui.interfaces.tools.shapes.ToolCreatePolygon2D
- clone() - Method in class mgui.interfaces.tools.shapes.ToolCreateRect2D
- clone() - Method in class mgui.interfaces.tools.shapes.ToolCutMeshWithPlane
- clone() - Method in class mgui.interfaces.tools.shapes.ToolGetConvexHull2D
- clone() - Method in class mgui.interfaces.tools.shapes.ToolGetMeshIntersectionPolylines
- clone() - Method in class mgui.interfaces.tools.shapes.ToolQueryShape2D
- clone() - Method in class mgui.interfaces.tools.shapes.ToolQueryShape3D
- clone() - Method in class mgui.interfaces.tools.shapes.ToolReversePolygon2D
- clone() - Method in class mgui.interfaces.tools.shapes.ToolRuler2D
- clone() - Method in class mgui.interfaces.tools.shapes.ToolSelectMeshBoundaryNodes
- clone() - Method in class mgui.interfaces.tools.shapes.ToolSelectNodesWithPolygon
- clone() - Method in class mgui.interfaces.tools.shapes.ToolSelectRegionBoundaryNodes
- clone() - Method in class mgui.interfaces.tools.shapes.ToolSelectShape2D
- clone() - Method in class mgui.interfaces.tools.shapes.ToolSelectShape3D
- clone() - Method in class mgui.interfaces.tools.shapes.ToolTestInternalPoint2D
- clone() - Method in interface mgui.interfaces.tools.Tool
- clone() - Method in class mgui.interfaces.trees.InterfaceTreeNode
- clone() - Method in interface mgui.models.dynamic.DynamicModelComponent
- clone() - Method in class mgui.models.dynamic.functions.Function
- clone() - Method in class mgui.models.environments.SimpleEnvironment
- clone() - Method in class mgui.models.networks.AbstractNetworkModel
- clone() - Method in class mgui.models.networks.components.AbstractNetworkComponent
- clone() - Method in class mgui.morph.sections.AttributeNode2D
- clone() - Method in class mgui.morph.sections.MappedPolygon2D
- clone() - Method in class mgui.morph.sections.MapWeight
- clone() - Method in class mgui.morph.sections.MorphNode2D
- clone() - Method in class mgui.morph.sections.NodeMap2D
- clone() - Method in class mgui.neuro.components.AbstractNeuroComponent
- clone() - Method in class mgui.neuro.components.AbstractNeuronalComponent
- clone() - Method in class mgui.neuro.components.compartments.AbstractCompartment
- clone() - Method in class mgui.neuro.components.compartments.CompartmentalComponent
- clone() - Method in class mgui.neuro.components.cortical.AbstractCorticalConnection
- clone() - Method in class mgui.neuro.components.cortical.AbstractCorticalOutput
- clone() - Method in class mgui.neuro.components.cortical.CorticalVolume
- clone() - Method in class mgui.neuro.components.cortical.functions.MorrisLecarFunction
- clone() - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
- clone() - Method in class mgui.neuro.components.CorticalVolume
- clone() - Method in class mgui.neuro.components.simple.SimpleAxon
- clone() - Method in class mgui.neuro.components.simple.SimpleDendrite
- clone() - Method in class mgui.neuro.components.simple.SimpleDendrites
- clone() - Method in class mgui.neuro.components.simple.SimpleMotorNeuron
- clone() - Method in class mgui.neuro.components.simple.SimpleNeuron
- clone() - Method in class mgui.neuro.components.simple.SimpleSensoryNeuron
- clone() - Method in class mgui.neuro.components.simple.SimpleSoma
- clone() - Method in class mgui.neuro.components.simple.SimpleSynapse
- clone() - Method in class mgui.neuro.networks.CorticalNetwork
- clone() - Method in class mgui.neuro.networks.KohonenNet
- clone() - Method in class mgui.neuro.networks.PerceptronNet
- clone() - Method in class mgui.numbers.MguiBoolean
- clone() - Method in class mgui.numbers.MguiDouble
- clone() - Method in class mgui.numbers.MguiFloat
- clone() - Method in class mgui.numbers.MguiInteger
- clone() - Method in class mgui.numbers.MguiLong
- clone() - Method in interface mgui.numbers.MguiNumber
- clone() - Method in class mgui.numbers.MguiShort
- clone() - Method in class mgui.pipelines.InterfacePipeline
- clone() - Method in class mgui.pipelines.JavaProcess
- clone() - Method in class mgui.pipelines.NativeProcess
- clone() - Method in class mgui.pipelines.PipelineProcess
- clone() - Method in class mgui.pipelines.PipelineProcessInstance
- clone() - Method in class mgui.pipelines.PipelineTask
- clone() - Method in class mgui.pipelines.TaskParameter
- cloneNode(boolean) - Method in class mgui.interfaces.shapes.Shape2DSectionNode
- close - Variable in class mgui.interfaces.tools.shapes.ToolCreatePolygon2D
- close() - Method in class mgui.datasources.DataRecordSet
- close() - Method in class mgui.interfaces.InterfaceDisplayPanel
-
Called when this display panel is closed
- close() - Method in class mgui.interfaces.io.DataBridge
- close() - Method in interface mgui.interfaces.io.DataInputStream
-
Closes this stream.
- close() - Method in interface mgui.interfaces.io.DataOutputStream
-
Closes this output stream.
- close() - Method in class mgui.io.domestic.variables.DefaultMatrixFileWriter
- close() - Method in class mgui.io.util.BufferedRandomAccessFile
- close() - Method in class mgui.io.util.ParallelOutputStream
- close() - Method in class mgui.pipelines.PipelineState.ErrorStreamListener
- Close - Class in mgui.io.standard.xml.svg
- Close(SVGParser.Mode) - Constructor for class mgui.io.standard.xml.svg.Close
- closed - Variable in class mgui.interfaces.io.DataBridge
- closedIcon - Variable in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer
-
Icon used to show non-leaf nodes that aren't expanded.
- closest_vertex - Variable in class mgui.interfaces.graphics.util.PickInfoShape2D
- Cm - Variable in class mgui.neuro.components.compartments.SimpleCompartment
- cmap - Variable in class mgui.interfaces.shapes.TensorVolume3DInt
- CMB_DISPLAY_MESH - Static variable in class mgui.interfaces.shapes.mesh.InterfaceMeshPanel
- CMB_NONE - Static variable in class mgui.interfaces.shapes.InterfaceShapesPanel
- CMB_NONE - Static variable in class mgui.interfaces.shapes.mesh.InterfaceMeshPanel
- CMB_SECTIONS - Variable in class mgui.interfaces.shapes.InterfaceSectionSetPanel
- CMB_SOURCE_WIN - Variable in class mgui.interfaces.graphics.InterfaceGraphicPanel
- CMB_WINDOWS - Variable in class mgui.interfaces.shapes.InterfaceSectionSetPanel
- cmbColourMap - Variable in class mgui.io.foreign.caret.CaretAreaColourOutDialogBox
- cmbCurvatureMethod - Variable in class mgui.interfaces.shapes.mesh.InterfaceMeshPanel
- cmbMesh - Variable in class mgui.io.domestic.shapes.SurfaceDataInputDialogBox
- cmbPointSet - Variable in class mgui.io.domestic.shapes.PointSet3DDataInputDialogBox
- cmbShapeSet - Variable in class mgui.io.domestic.shapes.ShapeInputDialogBox
- cmbShapeSet - Variable in class mgui.io.domestic.shapes.SurfaceInputDialogBox
- CMD_ADD_WIN - Variable in class mgui.interfaces.graphics.InterfaceGraphicPanel
- CMD_APPLY_WIN - Variable in class mgui.interfaces.graphics.InterfaceGraphicPanel
- CMD_ASSIGN_CORNERS - Variable in class mgui.morph.sections.InterfaceRadialRep
- CMD_ASSIGN_CORNERS - Variable in class mgui.morph.sections.InterfaceRadialRep2
- CMD_CHANGE_BOOL - Static variable in class mgui.interfaces.attributes.table.AttributeCellEditor
- CMD_CHANGE_BOOL - Variable in class mgui.interfaces.attributes.tree.AttributeTreeCellEditor
- CMD_CHANGE_COLOUR - Static variable in class mgui.interfaces.attributes.table.AttributeCellEditor
- CMD_CHANGE_COLOUR - Variable in class mgui.interfaces.attributes.tree.AttributeTreeCellEditor
- CMD_CHANGE_SELECTION - Static variable in class mgui.interfaces.attributes.table.AttributeCellEditor
- CMD_CHANGE_STROKE - Static variable in class mgui.interfaces.attributes.table.AttributeCellEditor
- CMD_CHANGE_STROKE - Variable in class mgui.interfaces.attributes.tree.AttributeTreeCellEditor
- CMD_CHANGE_TEXT - Static variable in class mgui.interfaces.attributes.table.AttributeCellEditor
- CMD_CHANGE_TEXT - Variable in class mgui.interfaces.attributes.tree.AttributeTreeCellEditor
- CMD_CHANGE_TYPE - Static variable in class mgui.interfaces.attributes.table.AttributeCellEditor
- CMD_CHANGE_TYPE - Variable in class mgui.interfaces.attributes.tree.AttributeTreeCellEditor
- CMD_CORNERS - Static variable in class mgui.morph.sections.InterfaceMorphPanel
- CMD_CORNERS - Static variable in class mgui.morph.sections.InterfaceMorphPanel2
- CMD_DECIMATE - Static variable in class mgui.interfaces.shapes.mesh.InterfaceMeshPanel
- CMD_DOWN_WIN - Variable in class mgui.interfaces.graphics.InterfaceGraphicPanel
- CMD_EXECUTE - Static variable in class mgui.morph.sections.InterfaceMorphPanel
- CMD_EXECUTE - Static variable in class mgui.morph.sections.InterfaceMorphPanel2
- CMD_GEN_CORNERS - Variable in class mgui.morph.sections.InterfaceRadialRep
- CMD_GEN_CORNERS - Variable in class mgui.morph.sections.InterfaceRadialRep2
- CMD_GEN_MULTI - Variable in class mgui.morph.sections.InterfaceRadialRep
- CMD_GEN_MULTI - Variable in class mgui.morph.sections.InterfaceRadialRep2
- CMD_GEN_SEL - Variable in class mgui.morph.sections.InterfaceRadialRep
- CMD_GEN_SEL - Variable in class mgui.morph.sections.InterfaceRadialRep2
- CMD_GROOM_POLY - Variable in class mgui.morph.sections.InterfaceRadialRep
- CMD_GROOM_POLY - Variable in class mgui.morph.sections.InterfaceRadialRep2
- CMD_MULTI_INPUT - Static variable in class mgui.interfaces.shapes.mesh.InterfaceMeshPanel
- CMD_MULTI_INPUT_EM - Static variable in class mgui.interfaces.shapes.mesh.InterfaceMeshPanel
- CMD_MULTI_OUTPUT - Static variable in class mgui.interfaces.shapes.mesh.InterfaceMeshPanel
- CMD_MULTI_OUTPUT_EM - Static variable in class mgui.interfaces.shapes.mesh.InterfaceMeshPanel
- CMD_NEXT - Variable in class mgui.interfaces.shapes.InterfaceSectionSetPanel
- CMD_NEXT_SUB - Variable in class mgui.interfaces.shapes.InterfaceSectionSetPanel
- CMD_PREV - Variable in class mgui.interfaces.shapes.InterfaceSectionSetPanel
- CMD_PREV_SUB - Variable in class mgui.interfaces.shapes.InterfaceSectionSetPanel
- CMD_REF - Variable in class mgui.interfaces.shapes.InterfaceSectionSetPanel
- CMD_REF_SOURCE - Variable in class mgui.interfaces.graphics.InterfaceGraphicPanel
- CMD_REF_SUB - Variable in class mgui.interfaces.shapes.InterfaceSectionSetPanel
- CMD_REM_WIN - Variable in class mgui.interfaces.graphics.InterfaceGraphicPanel
- CMD_ROTX - Variable in class mgui.interfaces.shapes.InterfaceSectionSetPanel
- CMD_ROTY - Variable in class mgui.interfaces.shapes.InterfaceSectionSetPanel
- CMD_ROTZ - Variable in class mgui.interfaces.shapes.InterfaceSectionSetPanel
- CMD_SET_SOURCE - Variable in class mgui.interfaces.graphics.InterfaceGraphicPanel
- CMD_SMOOTH - Static variable in class mgui.interfaces.shapes.mesh.InterfaceMeshPanel
- CMD_SUBDIVIDE - Static variable in class mgui.interfaces.shapes.mesh.InterfaceMeshPanel
- CMD_UP_WIN - Variable in class mgui.interfaces.graphics.InterfaceGraphicPanel
- CMD_UPDATE - Variable in class mgui.interfaces.shapes.InterfaceSectionSetPanel
- cmdCancel - Variable in class mgui.interfaces.InterfaceDialogBox
- cmdCurvature - Variable in class mgui.interfaces.shapes.mesh.InterfaceMeshPanel
- cmdOK - Variable in class mgui.interfaces.InterfaceDialogBox
- CNR_BL - Static variable in class mgui.geometry.Rect2D
-
Bottom-left corner
- CNR_BR - Static variable in class mgui.geometry.Rect2D
-
Bottom-right corner
- CNR_TL - Static variable in class mgui.geometry.Rect2D
-
Top-left corner
- CNR_TR - Static variable in class mgui.geometry.Rect2D
-
Top-right corner
- code - Variable in class mgui.models.events.SimpleEvent
- code - Variable in class mgui.neuro.components.simple.SimpleEvent
- collapseAllCategories() - Method in class mgui.interfaces.InterfacePanel
- collapseAllCategories() - Method in class mgui.interfaces.layouts.CategoryLayout
- collapseAllCategories() - Method in interface mgui.interfaces.layouts.CategoryObject
- collapseCategory(String) - Method in class mgui.interfaces.InterfacePanel
- collapseCategory(String) - Method in class mgui.interfaces.layouts.CategoryLayout
- collapseCategory(String) - Method in interface mgui.interfaces.layouts.CategoryObject
- collapseOtherCategories(String) - Method in class mgui.interfaces.InterfacePanel
- collapseOtherCategories(String) - Method in class mgui.interfaces.layouts.CategoryLayout
- collapseOtherCategories(String) - Method in interface mgui.interfaces.layouts.CategoryObject
- CollectionTreeNode(String, String) - Constructor for class mgui.interfaces.InterfaceWorkspace.CollectionTreeNode
- color - Static variable in class au.edu.unsw.cse.Axes
- color - Static variable in class au.edu.unsw.cse.Points3d
- ColorControl - Class in au.edu.unsw.cse
- ColorControl(String, String, boolean, Color, int, Viewer) - Constructor for class au.edu.unsw.cse.ColorControl
- Colormap - Class in mgui.io.foreign.vol
- Colormap() - Constructor for class mgui.io.foreign.vol.Colormap
- colors - Variable in class au.edu.unsw.cse.View3d
- colorSpace - Variable in class mgui.interfaces.shapes.volume.Volume3DTexture
- colour - Variable in class mgui.interfaces.maps.ContinuousColourMap.Anchor
- colour - Variable in class mgui.io.standard.xml.svg.SVGPath
- Colour - Class in mgui.util
- Colour() - Constructor for class mgui.util.Colour
- colour_map - Variable in class mgui.io.domestic.shapes.VolumeInputOptions
- colour_map - Variable in class mgui.io.foreign.caret.CaretAreaColourOutputOptions
- colour_map - Variable in class mgui.io.foreign.freesurfer.FreesurferVertexDataInOptions
- colour_map - Variable in class mgui.io.foreign.freesurfer.FreesurferVertexDataLoader
- colour_model - Variable in class mgui.interfaces.stats.HistogramPlot
- colour_models - Variable in class mgui.interfaces.shapes.Volume3DInt
- Colour1f - Class in mgui.util
- Colour1f() - Constructor for class mgui.util.Colour1f
- Colour1f(float) - Constructor for class mgui.util.Colour1f
- Colour2f - Class in mgui.util
- Colour2f() - Constructor for class mgui.util.Colour2f
- Colour2f(float, float) - Constructor for class mgui.util.Colour2f
- Colour3f - Class in mgui.util
- Colour3f() - Constructor for class mgui.util.Colour3f
- Colour3f(float, float, float) - Constructor for class mgui.util.Colour3f
- Colour3f(Color) - Constructor for class mgui.util.Colour3f
- Colour4f - Class in mgui.util
- Colour4f() - Constructor for class mgui.util.Colour4f
- Colour4f(float, float, float, float) - Constructor for class mgui.util.Colour4f
- Colour4f(Color) - Constructor for class mgui.util.Colour4f
- ColourBarOutDialog - Class in mgui.interfaces.gui
- ColourBarOutDialog(JFrame, ContinuousColourMap) - Constructor for class mgui.interfaces.gui.ColourBarOutDialog
- ColourButton - Class in mgui.interfaces.gui
-
Overrides renderer to colour component regardless of look and feel.
- ColourButton() - Constructor for class mgui.interfaces.gui.ColourButton
- ColourButton(Color) - Constructor for class mgui.interfaces.gui.ColourButton
- ColourButton(String) - Constructor for class mgui.interfaces.gui.ColourButton
- ColourButton(String, Color) - Constructor for class mgui.interfaces.gui.ColourButton
- ColourButton(String, Color, boolean) - Constructor for class mgui.interfaces.gui.ColourButton
- ColourButton(String, Color, boolean, boolean) - Constructor for class mgui.interfaces.gui.ColourButton
- colourFileOptions - Variable in class mgui.io.standard.xml.svg.SVGInputOptions
- colourMap - Variable in class mgui.image.util.WindowedColourModel
- colourMap - Variable in class mgui.interfaces.shapes.volume.Volume3DTexture
- colourMap - Variable in class mgui.io.foreign.vol.VolumeInputOptions
- colourMap - Variable in class mgui.io.standard.xml.svg.SVGFileInterface
- ColourMap - Class in mgui.interfaces.maps
-
Abstract class for mapping values (instances of
Comparable) to colours. - ColourMap - mgui.interfaces.shapes.volume.Volume3DTexture.UpdateTextureType
- ColourMap() - Constructor for class mgui.interfaces.maps.ColourMap
- colourMapChanged(ColourMap) - Method in interface mgui.interfaces.maps.ColourMapListener
- colourMapChanged(ColourMap) - Method in class mgui.interfaces.shapes.Volume3DInt
- ColourMapChanged - mgui.interfaces.shapes.VertexDataColumnEvent.EventType
- ColourMapListener - Interface in mgui.interfaces.maps
- ColourMapLoader - Class in mgui.io.domestic.maps
-
Base class for loading a colour map from file.
- ColourMapLoader() - Constructor for class mgui.io.domestic.maps.ColourMapLoader
- ColourMapLoader(File) - Constructor for class mgui.io.domestic.maps.ColourMapLoader
- ColourMapped - mgui.interfaces.plots.mgui.MatrixImagePlot.ColourType
- ColourMapXMLHandler - Class in mgui.io.domestic.maps
-
XML (SAX) handler for reading XML-format colour map files.
- ColourMapXMLHandler() - Constructor for class mgui.io.domestic.maps.ColourMapXMLHandler
- colourModelChanged(boolean) - Method in class mgui.interfaces.shapes.volume.GridVertexDataColumn
-
Called when some process has altered the colour model.
- colours - Variable in class mgui.interfaces.maps.DiscreteColourMap
- colours - Variable in class mgui.interfaces.plots.sgt.SgtMultilinePlotDialog.YTableModel
- colours - Variable in class mgui.interfaces.plots.sgt.SgtScatterPlotDialog.XYTableModel
- colours - Variable in class mgui.interfaces.shapes.Mesh2DInt
- Colours - Class in mgui.util
- Colours() - Constructor for class mgui.util.Colours
- colourTableFile - Variable in class mgui.io.standard.xml.svg.SVGInputOptions
- column - Variable in class mgui.interfaces.shapes.datasources.DataSourceLinkOptions
- column_format - Variable in class mgui.io.standard.gifti.GiftiOutputOptions
- ColumnAdded - mgui.interfaces.shapes.VertexDataColumnEvent.EventType
- ColumnChanged - mgui.interfaces.shapes.VertexDataColumnEvent.EventType
- ColumnIsCurrent - mgui.interfaces.shapes.VertexDataColumnEvent.EventType
- ColumnRemoved - mgui.interfaces.shapes.VertexDataColumnEvent.EventType
- columns - Variable in class mgui.io.domestic.shapes.ShapeDataInputOptions
- columns - Variable in class mgui.io.domestic.shapes.SurfaceDataOutputOptions
- columns - Variable in class mgui.io.foreign.caret.CaretMetricInOptions
- columns - Variable in class mgui.io.foreign.caret.CaretMetricLoader.Header
- columns - Variable in class mgui.io.foreign.caret.CaretPaintInOptions
- columns - Variable in class mgui.io.foreign.caret.CaretPaintLoader.Header
- columns - Variable in class mgui.util.JMultiLineToolTip
- ColumnsAsVectors - mgui.io.domestic.variables.MatrixInOptions.Variable
- combine(Mesh3D, Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Combines
mesh1andmesh2and returns the result. - combo_box - Variable in class mgui.interfaces.attributes.AttributeSelection
- combo_mode - Variable in class mgui.interfaces.attributes.AttributeSelectionMap
- combo_width - Variable in class mgui.interfaces.attributes.AttributeSelectionMap
- comboPanel - Variable in class mgui.interfaces.InterfaceWorkspace
- command - Variable in class mgui.pipelines.NativeProcess
- CommandException - Exception in mgui.command
-
Exception on a command object
- CommandException(String) - Constructor for exception mgui.command.CommandException
- CommandFunctions - Class in mgui.command
-
Utility class providing functions to interact with the operating system.
- CommandFunctions() - Constructor for class mgui.command.CommandFunctions
- CommandFunctions.ProcessState - Enum in mgui.command
- CommandInstance - Class in mgui.command
-
Class which handles command-line arguments and calls specific methods as implemented by a sub-class.
- CommandInstance() - Constructor for class mgui.command.CommandInstance
- CommandInterpreter - Class in mgui.command
-
Serves as the base class for command-line interpreters which interact with mgui.
- CommandInterpreter() - Constructor for class mgui.command.CommandInterpreter
- compare(double, double, double) - Static method in class mgui.numbers.NumberFunctions
-
Compares two numbers within a given precision (number of zeros).
- compare(Object, Object) - Method in class mgui.geometry.util.GeometryFunctions.Point3fComp
- compare(Object, Object) - Method in class mgui.interfaces.attributes.AttributeComparator
- compare(Object, Object) - Method in class mgui.interfaces.maps.ValueItemComparator
- compare(Object, Object) - Method in class mgui.morph.sections.AttributeNodeComparator
- compare(Object, Object) - Method in class mgui.morph.sections.MapWeightComparator
- compare(Object, Object) - Method in class mgui.morph.sections.NodeMapComparator
- compare(SortedShape3D.Vertex, SortedShape3D.Vertex) - Method in class mgui.geometry.util.SortedShape3D.VertexComparatorX
- compare(SortedShape3D.Vertex, SortedShape3D.Vertex) - Method in class mgui.geometry.util.SortedShape3D.VertexComparatorY
- compare(SortedShape3D.Vertex, SortedShape3D.Vertex) - Method in class mgui.geometry.util.SortedShape3D.VertexComparatorZ
- compare(Point3f, Point3f) - Method in class mgui.interfaces.shapes.util.ShapeFunctions.Point3fComparatorX
- compare(Point3f, Point3f) - Method in class mgui.interfaces.shapes.util.ShapeFunctions.Point3fComparatorY
- compare(Point3f, Point3f) - Method in class mgui.interfaces.shapes.util.ShapeFunctions.Point3fComparatorZ
- compareDouble(double, double) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns -1 if a < b, 0 if a = b, +1 if a > b, within the limits of
error. - compareDouble(double, double, double) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns -1 if a < b, 0 if a = b, +1 if a > b, within the limits of
error. - compareFloat(float, float) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns -1 if a < b, 0 if a = b, +1 if a > b, within the limits of
error. - compareFloat(float, float, double) - Static method in class mgui.geometry.util.GeometryFunctions
-
Returns -1 if a < b, 0 if a = b, +1 if a > b, within the limits of
error. - compareTo(double) - Method in class mgui.numbers.MguiBoolean
- compareTo(double) - Method in class mgui.numbers.MguiDouble
- compareTo(double) - Method in class mgui.numbers.MguiFloat
- compareTo(double) - Method in class mgui.numbers.MguiInteger
- compareTo(double) - Method in class mgui.numbers.MguiLong
- compareTo(double) - Method in interface mgui.numbers.MguiNumber
- compareTo(double) - Method in class mgui.numbers.MguiShort
- compareTo(double, int) - Method in class mgui.numbers.MguiBoolean
- compareTo(double, int) - Method in class mgui.numbers.MguiDouble
- compareTo(double, int) - Method in class mgui.numbers.MguiFloat
- compareTo(double, int) - Method in class mgui.numbers.MguiInteger
- compareTo(double, int) - Method in class mgui.numbers.MguiLong
- compareTo(double, int) - Method in interface mgui.numbers.MguiNumber
- compareTo(double, int) - Method in class mgui.numbers.MguiShort
- compareTo(float) - Method in class mgui.numbers.MguiFloat
- compareTo(Object) - Method in interface mgui.util.arComparable
- compareTo(DataField) - Method in class mgui.datasources.DataField
- compareTo(EnergySphere.EnergyNode) - Method in class mgui.geometry.mesh.EnergySphere.EnergyNode
- compareTo(Mesh3D.MeshFace3D) - Method in class mgui.geometry.Mesh3D.MeshFace3D
- compareTo(GeometryFunctions.AnglePoint2D) - Method in class mgui.geometry.util.GeometryFunctions.AnglePoint2D
- compareTo(Attribute<V>) - Method in class mgui.interfaces.attributes.Attribute
- compareTo(InterfaceGraphic) - Method in class mgui.interfaces.graphics.InterfaceGraphic
- compareTo(PickInfoShape2D) - Method in class mgui.interfaces.graphics.util.PickInfoShape2D
- compareTo(Video3D) - Method in class mgui.interfaces.graphics.video.Video3D
- compareTo(VideoTask) - Method in class mgui.interfaces.graphics.video.VideoTask
- compareTo(View3D) - Method in class mgui.interfaces.graphics.View3D
- compareTo(AbstractGraphNode) - Method in class mgui.interfaces.graphs.AbstractGraphNode
- compareTo(ProjectDirectory) - Method in class mgui.interfaces.projects.ProjectDirectory
- compareTo(ProjectInstance) - Method in class mgui.interfaces.projects.ProjectInstance
- compareTo(ProjectInstanceGroup) - Method in class mgui.interfaces.projects.ProjectInstanceGroup
- compareTo(InterfaceShape) - Method in class mgui.interfaces.shapes.InterfaceShape
- compareTo(QueryShapeVertex) - Method in class mgui.interfaces.shapes.queries.QueryShapeVertex
- compareTo(VertexDataColumn) - Method in class mgui.interfaces.shapes.VertexDataColumn
- compareTo(DynamicModelComponent) - Method in class mgui.neuro.components.AbstractNeuroComponent
- compareTo(MguiNumber) - Method in class mgui.numbers.MguiBoolean
- compareTo(MguiNumber) - Method in class mgui.numbers.MguiDouble
- compareTo(MguiNumber) - Method in class mgui.numbers.MguiFloat
- compareTo(MguiNumber) - Method in class mgui.numbers.MguiInteger
- compareTo(MguiNumber) - Method in class mgui.numbers.MguiLong
- compareTo(MguiNumber) - Method in class mgui.numbers.MguiShort
- compareTo(PipelineTask) - Method in class mgui.pipelines.PipelineTask
- compareTo(NamedIcon) - Method in class mgui.resources.icons.NamedIcon
- compareTo(Histogram.Bin) - Method in class mgui.stats.Histogram.Bin
- compareTo(Unit) - Method in class mgui.util.Unit
- compareToPlane(Point3d, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines the position of
ptwith respect toplane. - compareToPlane(Point3f, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines the position of
ptwith respect toplane. - comparison - Variable in class mgui.interfaces.shapes.InterfaceShapesPanel.VertexSelectionTableModel
- compartment - Variable in class mgui.neuro.components.compartments.CompartmentEvent
- CompartmentalComponent - Class in mgui.neuro.components.compartments
-
Base abstract class for all components using a compartmental model.
- CompartmentalComponent() - Constructor for class mgui.neuro.components.compartments.CompartmentalComponent
- CompartmentalDendrite - Class in mgui.neuro.components.compartments
-
Represents a dendrite whose activity is determined by the cable model (see Rawl etc.) and a compartmental discrete (numerical) approximation of its differential functions.
- CompartmentalDendrite() - Constructor for class mgui.neuro.components.compartments.CompartmentalDendrite
- CompartmentalDendrite(int, double, double, double, double, double) - Constructor for class mgui.neuro.components.compartments.CompartmentalDendrite
- CompartmentalNeuron - Class in mgui.neuro.components.compartments
- CompartmentalNeuron() - Constructor for class mgui.neuro.components.compartments.CompartmentalNeuron
- CompartmentalSoma - Class in mgui.neuro.components.compartments
- CompartmentalSoma() - Constructor for class mgui.neuro.components.compartments.CompartmentalSoma
- CompartmentEvent - Class in mgui.neuro.components.compartments
-
Basic event for compartments of a compartmental model.
- CompartmentEvent(AbstractCompartment) - Constructor for class mgui.neuro.components.compartments.CompartmentEvent
- compartments - Variable in class mgui.neuro.components.compartments.CompartmentalComponent
- componentAdded(DynamicModelComponent) - Method in class mgui.models.dynamic.DynamicModelEngine
- componentAdded(DynamicModelComponent) - Method in interface mgui.models.dynamic.DynamicModelListener
- componentHidden(ComponentEvent) - Method in class mgui.interfaces.gui.ColourBarOutDialog
- componentHidden(ComponentEvent) - Method in class mgui.interfaces.InterfacePanel
- componentMoved(ComponentEvent) - Method in class mgui.interfaces.gui.ColourBarOutDialog
- componentMoved(ComponentEvent) - Method in class mgui.interfaces.InterfacePanel
- componentRemoved(DynamicModelComponent) - Method in class mgui.models.dynamic.DynamicModelEngine
- componentRemoved(DynamicModelComponent) - Method in interface mgui.models.dynamic.DynamicModelListener
- componentResized(ComponentEvent) - Method in class mgui.interfaces.graphics.InterfaceGraphic3D
-
Resize axes on window resize, after given delay (to avoid excessive updates)
- componentResized(ComponentEvent) - Method in class mgui.interfaces.gui.ColourBarOutDialog
- componentResized(ComponentEvent) - Method in class mgui.interfaces.InterfacePanel
- components - Variable in class mgui.interfaces.layouts.LineLayout
- components - Variable in class mgui.neuro.components.AbstractDendrites
- componentShown(ComponentEvent) - Method in class mgui.interfaces.gui.ColourBarOutDialog
- componentShown(ComponentEvent) - Method in class mgui.interfaces.InterfacePanel
- componentUpdated(NetworkComponentEvent) - Method in class mgui.graphs.networks.AbstractNetworkGraphConnection
- componentUpdated(NetworkComponentEvent) - Method in class mgui.graphs.networks.AbstractNetworkGraphNode
- componentUpdated(NetworkComponentEvent) - Method in class mgui.interfaces.neuro.InterfaceNeuroTreeNode
- componentUpdated(NetworkComponentEvent) - Method in interface mgui.models.networks.components.InterfaceNetworkComponentListener
- componentUpdated(NetworkComponentEvent) - Method in class mgui.neuro.networks.AbstractNeuralNet
- componentUpdated(NetworkComponentEvent) - Method in class mgui.neuro.networks.CorticalNetwork
- composite_alphas - Variable in class mgui.interfaces.shapes.Volume3DInt
- composite_column_order - Variable in class mgui.interfaces.shapes.Volume3DInt
- compress - Variable in class mgui.io.domestic.shapes.VolumeOutputOptions
- compress - Variable in class mgui.io.standard.nifti.NiftiMetadata
- compressGZipped(byte[]) - Static method in class mgui.io.util.IoFunctions
-
Compresses a gzipped byte array.
- compressZipped(byte[]) - Static method in class mgui.io.util.IoFunctions
-
Compresses a byte array.
- computeConvexHull(Shape3DInt, String, ProgressUpdater) - Method in class mgui.interfaces.shapes.util.ShapeEngine
-
Computes a convex hull for
shape. - computeCorticalPatchCorrelations(Mesh3D, ArrayList<MguiNumber>, HashMap<String, Object>) - Static method in class mgui.geometry.neuro.connectivity.NeuroConnectivityFunctions
-
Computes correlations between "patches" of cortex, defined by a set of vertices and a patch function.
- computeMeanCurvature(Mesh3DInt, ProgressUpdater) - Method in class mgui.geometry.mesh.MeshEngine
-
Computes the vertex-wise mean curvature of this mesh and stores it in the "target_column" specified it the "Mean Curvature" attributes.
- computeVertexWiseCurvature(Mesh3DInt, String, ProgressUpdater) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Computes the curvature of a mesh at each of its nodes, as the magnitude of the sum of surface normals of the triangles of which it is a node.
- concatenate(AffineTransform) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer
- Concise - mgui.interfaces.logs.LoggingType
- condenseMesh(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Condenses a mesh by removing all coincident nodes.
- conjugate() - Method in class au.edu.unsw.cse.Quaternion
- conn - Variable in class mgui.datasources.DataSource
- connect() - Method in class mgui.datasources.DataSource
-
Attempts to connect to a data source with the given parameters.
- connect(int, int, double) - Method in class mgui.neuro.networks.CorticalNetwork
- connect(String, String, double) - Method in class mgui.neuro.networks.CorticalNetwork
- connect(AbstractCorticalRegion, AbstractCorticalRegion, double) - Method in class mgui.neuro.networks.CorticalNetwork
- ConnectableNeuron - Class in mgui.neuro.components.types
- ConnectableNeuron() - Constructor for class mgui.neuro.components.types.ConnectableNeuron
- connectDendrite(ConnectableNeuron, AbstractSynapse, int) - Method in class mgui.neuro.components.types.ConnectableNeuron
- connectDendrites() - Method in class mgui.neuro.components.AbstractNeuron
-
Resets the dendrite connectivity for this neuron by connecting all dendrites which are not connected to other dendrites to this neuron's soma.
- connectDendrites() - Method in class mgui.neuro.components.compartments.CompartmentalNeuron
- connectDendrites() - Method in interface mgui.neuro.components.Neuron
- connection - Variable in class mgui.datasources.DataSource
- connections - Variable in class mgui.neuro.components.AbstractNeuroComponent
- connectOpenDendrite(ConnectableNeuron, AbstractSynapse) - Method in class mgui.neuro.components.types.ConnectableNeuron
-
Connect the passed SimpleNeuron to this neuron's first open (synapse-free) dendrite.
- connectRegions(String, String) - Method in class mgui.neuro.networks.CorticalNetwork
- connectSynapse(AbstractSynapse) - Method in class mgui.neuro.components.simple.SimpleAxon
- connectSynapse(Synapse) - Method in class mgui.neuro.components.AbstractAxon
- connectSynapse(Synapse) - Method in interface mgui.neuro.components.Axon
- connectTo(AbstractCorticalRegion) - Method in class mgui.neuro.components.cortical.AbstractCorticalConnection
- connectTo(AbstractCorticalRegion) - Method in class mgui.neuro.components.cortical.CorticalVolume
- connectTo(AbstractCorticalRegion) - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalConnection
- connectTo(AbstractCorticalRegion) - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalInput
- connectTo(AbstractCorticalRegion, double) - Method in class mgui.neuro.components.cortical.AbstractCorticalRegion
- connectTo(AbstractCorticalRegion, double) - Method in class mgui.neuro.components.cortical.CorticalVolume
- connectTo(AbstractCorticalRegion, double) - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalConnection
- connectTo(AbstractCorticalRegion, double) - Method in class mgui.neuro.components.cortical.simple.SimpleCorticalRegion
- connectTo(Dendrite) - Method in class mgui.neuro.components.AbstractDendrite
-
Connects this dendrite to another dendrite.
- connectTo(Dendrite) - Method in class mgui.neuro.components.compartments.CompartmentalDendrite
- connectTo(Dendrite) - Method in interface mgui.neuro.components.Dendrite
- connectTo(Dendrite) - Method in class mgui.neuro.components.simple.SimpleDendrite
- connectTo(Soma) - Method in class mgui.neuro.components.AbstractDendrite
-
Connects this dendrite to a soma.
- connectTo(Soma) - Method in class mgui.neuro.components.compartments.CompartmentalDendrite
- connectTo(Soma) - Method in interface mgui.neuro.components.Dendrite
- connectTo(Soma) - Method in class mgui.neuro.components.simple.SimpleDendrite
- connectTo(ConnectableNeuron, AbstractSynapse) - Method in class mgui.neuro.components.types.ConnectableNeuron
- consolidateDirectories(HashMap<String, Object>) - Static method in class mgui.interfaces.projects.util.ProjectFunctions
-
Consolidates the contents of a set of directories into a single directory.
- consolidateDirectories(HashMap<String, Object>, ProgressUpdater) - Static method in class mgui.interfaces.projects.util.ProjectFunctions
-
Consolidates the contents of a set of directories into a single directory.
- ConsolidateDirectoriesDialogBox - Class in mgui.interfaces.projects.util
-
Defines parameters for a consolidation of directories into one directory.
- ConsolidateDirectoriesDialogBox(JFrame, InterfaceOptions) - Constructor for class mgui.interfaces.projects.util.ConsolidateDirectoriesDialogBox
- ConstrainedRadialRepresentation - Class in mgui.morph.sections
- ConstrainedRadialRepresentation() - Constructor for class mgui.morph.sections.ConstrainedRadialRepresentation
- ConstrainedRadialRepresentation(Polygon2D) - Constructor for class mgui.morph.sections.ConstrainedRadialRepresentation
- constraints - Variable in class mgui.interfaces.layouts.CategoryLayout
- constraints - Variable in class mgui.interfaces.layouts.LineLayout
- constraints - Variable in class mgui.interfaces.shapes.InterfaceShape
- constraints - Variable in class mgui.interfaces.shapes.PointSet2DInt
- consume() - Method in class mgui.interfaces.shapes.util.ShapeEvent
- contained - Variable in class mgui.interfaces.shapes.mesh.MeshPlaneMaskOptions
- contains(int) - Method in class mgui.interfaces.maps.NameMap
- contains(String) - Method in class mgui.interfaces.maps.NameMap
- contains(Point2f) - Method in class mgui.geometry.Polygon2D
- contains(Point2f) - Method in class mgui.geometry.Rect2D
- contains(Point2f) - Method in class mgui.geometry.Shape2D
- contains(Point2f) - Method in class mgui.geometry.Triangle2D
-
From http://www.blackpawn.com/texts/pointinpoly/default.html: function SameSide(p1,p2, a,b) cp1 = CrossProduct(b-a, p1-a) cp2 = CrossProduct(b-a, p2-a) if DotProduct(cp1, cp2) >= 0 then return true else return false function PointInTriangle(p, a,b,c) if SameSide(p,a, b,c) and SameSide(p,b, a,c) and SameSide(p,c, a,b) then return true else return false
- contains(Point2f) - Method in class mgui.interfaces.shapes.Shape2DInt
- contains(Point3d) - Method in class mgui.interfaces.shapes.Shape3DInt
- contains(Point3f) - Method in class mgui.geometry.Box3D
- contains(Point3f) - Method in class mgui.geometry.Shape3D
-
Determines whether this shape contains
point. - contains(Point3f) - Method in class mgui.geometry.Triangle3D
-
Determines whether
pis contained by this triangle. - containsByReferenceShapes() - Method in class mgui.io.domestic.shapes.ShapeModel3DOutputOptions
-
Returns
trueif this options contains any shapes to be written by reference - containsObject(Object) - Method in class mgui.interfaces.trees.InterfaceTreeNode
- containsTab(String) - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel
- Context - Class in mgui.io.foreign.vol
- Context(URL) - Constructor for class mgui.io.foreign.vol.Context
- ContinuousColourBar - Class in mgui.interfaces.maps
-
Component displays a continuous colour map as a horizontal bar portraying the colour gradient between anchors.
- ContinuousColourBar() - Constructor for class mgui.interfaces.maps.ContinuousColourBar
- ContinuousColourBar(ContinuousColourMap) - Constructor for class mgui.interfaces.maps.ContinuousColourBar
- ContinuousColourMap - Class in mgui.interfaces.maps
-
Maps colours to values based upon a set of anchors (expressed on the range [0:1]) and an interpolator.
- ContinuousColourMap() - Constructor for class mgui.interfaces.maps.ContinuousColourMap
- ContinuousColourMap(String) - Constructor for class mgui.interfaces.maps.ContinuousColourMap
- ContinuousColourMap.Anchor - Class in mgui.interfaces.maps
- ContinuousColourMapLoader - Class in mgui.io.domestic.maps
-
Loads a comma-delimited continuous colour map.
- ContinuousColourMapLoader() - Constructor for class mgui.io.domestic.maps.ContinuousColourMapLoader
- ContinuousColourMapLoader(File) - Constructor for class mgui.io.domestic.maps.ContinuousColourMapLoader
- ContinuousColourMapWriter - Class in mgui.io.domestic.maps
-
Writes a comma-delimited continuous colour map.
- ContinuousColourMapWriter() - Constructor for class mgui.io.domestic.maps.ContinuousColourMapWriter
- ContinuousColourMapWriter(File) - Constructor for class mgui.io.domestic.maps.ContinuousColourMapWriter
- controlNodes - Variable in class mgui.morph.sections.ConstrainedRadialRepresentation
- controlRadialNodes - Variable in class mgui.morph.sections.ConstrainedRadialRepresentation
- controlsValid() - Method in class mgui.interfaces.datasources.DataSourceDriverDialogBox
- conversion_factor - Variable in class mgui.util.ScaledUnit
- convert(Unit, double) - Method in class mgui.geometry.util.SpatialUnit
-
Converts
value, specified withunit, to its equivalent in thisUnit. - convert(Unit, double) - Method in class mgui.util.ScaledUnit
-
Converts
value, specified withunit, to its equivalent in thisUnit. - convert(Unit, double) - Method in class mgui.util.Unit
-
Converts
value, specified withunit, to its equivalent in thisUnit. - convertRawGreytoPNG(String, String, int, int, int) - Static method in class mgui.io.imaging.ImagingIOFunctions
- convertRawRGBtoPNG(String, String, int, int, int) - Static method in class mgui.io.imaging.ImagingIOFunctions
- ConvertRawToPNG - Class in mgui.neuro.imaging.tasks
-
Read in an rgb raw image and write out a png image
- ConvertRawToPNG() - Constructor for class mgui.neuro.imaging.tasks.ConvertRawToPNG
- ConvexHullFunctions - Class in mgui.geometry.util
- ConvexHullFunctions() - Constructor for class mgui.geometry.util.ConvexHullFunctions
- coord_comment - Variable in class mgui.io.foreign.caret.CaretSurfaceInfo
-
coord header: BeginHeader caret-version 5.402 comment Coord Frame (stereotaxic space), orientation specified (3 Aug 2006 - DVE) This file is the average of: Human_Buck_Case01.R.F.RegToPALS_B12.LR.FIDUCIAL_SPM2.73730.coord Human_Buck_Case02.R.F.RegToPALS_B12.LR.FIDUCIAL_SPM2.73730.coord Human_Buck_Case03.R.F.RegToPALS_B12.LR.FIDUCIAL_SPM2.73730.coord Human_Buck_Case04.R.F.RegToPALS_B12.LR.FIDUCIAL_SPM2.clean.73730.coord Human_Buck_Case05.R.F.RegToPALS_B12.LR.FIDUCIAL_SPM2.73730.coord Human_Buck_Case06.R.F.RegToPALS_B12.LR.FIDUCIAL_SPM2.clean.73730.coord Human_Buck_Case07.R.M.RegToPALS_B12.LR.FIDUCIAL_SPM2.73730.coord Human_Buck_Case08.R.M.RegToPALS_B12.LR.FIDUCIAL_SPM2.73730.coord Human_Buck_Case09.R.M.RegToPALS_B12.LR.FIDUCIAL_SPM2.73730.coord Human_Buck_Case10.R.M.RegToPALS_B12.LR.FIDUCIAL_SPM2.73730.coord Human_Buck_Case11.R.M.RegToPALS_B12.LR.FIDUCIAL_SPM2.73730.coord Human_Buck_Case12.R.M.RegToPALS_B12.LR.FIDUCIAL_SPM2.clean.73730.coord configuration_id FIDUCIAL coordframe_id SPM2 date Thu Aug 3 21:54:45 2006 encoding BINARY orientation LPI structure right topo_file Human.sphere_6.RIGHT_HEM.73730.topo EndHeader
- coord_configuration_id - Variable in class mgui.io.foreign.caret.CaretSurfaceInfo
- coord_coordframe_id - Variable in class mgui.io.foreign.caret.CaretSurfaceInfo
- coord_orientation - Variable in class mgui.io.foreign.caret.CaretSurfaceInfo
- coord_structure - Variable in class mgui.io.foreign.caret.CaretSurfaceInfo
- CoordAttr - Class in mgui.io.foreign.vol
- coordFile - Variable in class mgui.io.foreign.caret.CaretSurfaceLoader
- coordFile - Variable in class mgui.io.foreign.caret.CaretSurfaceOutOptions
- coordFile - Variable in class mgui.io.foreign.caret.CaretSurfaceWriter
- Coordinate3DLayout<V extends AbstractGraphNode,E extends AbstractGraphEdge> - Class in mgui.interfaces.graphs.layouts
-
Layout for graph nodes in 3D, specifying fixed positions in R3.
- Coordinate3DLayout(Graph<V, E>) - Constructor for class mgui.interfaces.graphs.layouts.Coordinate3DLayout
- CoordinateLayout<V extends AbstractGraphNode,E extends AbstractGraphEdge> - Class in mgui.interfaces.graphs.layouts
-
Layout for AbstractGraphNodes, which projects the 3D locations of these nodes onto a given plane.
- CoordinateLayout(Graph<V, E>) - Constructor for class mgui.interfaces.graphs.layouts.CoordinateLayout
-
Creates an instance for the specified graph, with a default horizontal projection plane.
- CoordinateLayout(Graph<V, E>, Plane3D) - Constructor for class mgui.interfaces.graphs.layouts.CoordinateLayout
- coordTypes - Static variable in class mgui.interfaces.graphics.util.DrawingEngine
- coordURL - Variable in class mgui.io.foreign.caret.CaretSurfaceLoader
- coordURL - Variable in class mgui.io.foreign.caret.CaretSurfaceWriter
- copy() - Method in class mgui.interfaces.gui.InterfaceComboBox
-
Copies this combo box to a new combo box, containing the same items.
- copyAttributes(InterfaceShape) - Method in class mgui.interfaces.shapes.InterfaceShape
-
Copies
attributesto this shape. - copyAttributes(InterfaceShape) - Method in class mgui.interfaces.shapes.Shape3DInt
- copyAttributes(VertexDataColumn) - Method in class mgui.interfaces.shapes.VertexDataColumn
-
Copies the attributes of
source_columnto this column. - copyDir(File, File) - Static method in class mgui.io.util.IoFunctions
-
Copies the directory
dirand all its contents to the directorydest. - copyDir(File, File, boolean) - Static method in class mgui.io.util.IoFunctions
-
Copies the directory
dirand all its contents to the directorydest. - copyDir(File, File, boolean, ProgressUpdater) - Static method in class mgui.io.util.IoFunctions
-
Copies the directory
dirand all its contents to the directorydest. - copyDirContents(File, File) - Static method in class mgui.io.util.IoFunctions
-
Copies the contents of directory
dir(but not the directory itself) to the directorydest. - copyDirContents(File, File, boolean) - Static method in class mgui.io.util.IoFunctions
-
Copies the contents of directory
dir(but not the directory itself) to the directorydest. - copyDirContents(File, File, boolean, ProgressUpdater) - Static method in class mgui.io.util.IoFunctions
-
Copies the contents of directory
dir(but not the directory itself) to the directorydest. - copyFile(File, File) - Static method in class mgui.io.util.IoFunctions
-
Copies
sourceFileto the path specified bydestFile. - copyHeader(Nifti1Dataset) - Method in class mgui.io.standard.nifti.Nifti1Dataset
- corner1 - Variable in class mgui.geometry.Rect2D
- corner2 - Variable in class mgui.geometry.Rect2D
- correction_stdev - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions
- correctOrientation(Mesh3D) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Orients all faces with each other, starting with the first face
- correctOrientation(Mesh3D, boolean) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Orients all faces with each other (starting with face 0)
- CorticalFunction - Class in mgui.neuro.components.cortical.functions
- CorticalFunction() - Constructor for class mgui.neuro.components.cortical.functions.CorticalFunction
- CorticalHemisphereSet3DInt - Class in mgui.interfaces.shapes.neuro
- CorticalHemisphereSet3DInt() - Constructor for class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt
- CorticalHemisphereSet3DInt(String) - Constructor for class mgui.interfaces.shapes.neuro.CorticalHemisphereSet3DInt
- CorticalNetwork - Class in mgui.neuro.networks
- CorticalNetwork() - Constructor for class mgui.neuro.networks.CorticalNetwork
- CorticalNetwork(String) - Constructor for class mgui.neuro.networks.CorticalNetwork
- CorticalNetworkGraph - Class in mgui.neuro.graphs
- CorticalNetworkGraph() - Constructor for class mgui.neuro.graphs.CorticalNetworkGraph
- CorticalNetworkGraph(CorticalNetwork) - Constructor for class mgui.neuro.graphs.CorticalNetworkGraph
- CorticalNetworkGraphConnection - Class in mgui.neuro.graphs
- CorticalNetworkGraphConnection(AbstractCorticalConnection, CorticalNetworkGraphNode, CorticalNetworkGraphNode) - Constructor for class mgui.neuro.graphs.CorticalNetworkGraphConnection
- CorticalNetworkGraphNode - Class in mgui.neuro.graphs
- CorticalNetworkGraphNode(AbstractCorticalRegion) - Constructor for class mgui.neuro.graphs.CorticalNetworkGraphNode
- CorticalNetworkMatrixInDialogBox - Class in mgui.io.domestic.network
- CorticalNetworkMatrixInDialogBox() - Constructor for class mgui.io.domestic.network.CorticalNetworkMatrixInDialogBox
- CorticalNetworkMatrixInDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.domestic.network.CorticalNetworkMatrixInDialogBox
- CorticalNetworkMatrixInOptions - Class in mgui.io.domestic.network
-
Inputs a matrix as a weighted cortical network.
- CorticalNetworkMatrixInOptions() - Constructor for class mgui.io.domestic.network.CorticalNetworkMatrixInOptions
- CorticalNetworkMatrixInOptions(CorticalNetworkMatrixInOptions.Format) - Constructor for class mgui.io.domestic.network.CorticalNetworkMatrixInOptions
- CorticalNetworkMatrixInOptions.Format - Enum in mgui.io.domestic.network
- CorticalNetworkMatrixLoader - Class in mgui.io.domestic.network
-
Reads an ASCII matrix representing a connected network into a cortical network, assigning weights based upon a specified range (mapped to the continuous range [0.0:1.0]).
- CorticalNetworkMatrixLoader() - Constructor for class mgui.io.domestic.network.CorticalNetworkMatrixLoader
- CorticalNetworkMatrixLoader(File) - Constructor for class mgui.io.domestic.network.CorticalNetworkMatrixLoader
- CorticalNetworkMatrixLoader(File, CorticalNetworkMatrixInOptions) - Constructor for class mgui.io.domestic.network.CorticalNetworkMatrixLoader
- CorticalNetworkXMLHandler - Class in mgui.io.domestic.network
-
Handler for XML encoding of cortical networks.
- CorticalNetworkXMLHandler() - Constructor for class mgui.io.domestic.network.CorticalNetworkXMLHandler
- CorticalNetworkXMLHandler(CorticalNetworkMatrixInOptions) - Constructor for class mgui.io.domestic.network.CorticalNetworkXMLHandler
- CorticalRegion - Class in mgui.neuro.components
-
Represents a component at the resolution of a cortical region.
- CorticalRegion() - Constructor for class mgui.neuro.components.CorticalRegion
- CorticalSurfaceSet3DInt - Class in mgui.interfaces.shapes.neuro
-
Representation of a set of cortical surfaces, including grey matter (GM) interfaces with white matter (WM) and cerebrospinal fluid (CSF).
- CorticalSurfaceSet3DInt() - Constructor for class mgui.interfaces.shapes.neuro.CorticalSurfaceSet3DInt
- CorticalSurfaceSet3DInt(String) - Constructor for class mgui.interfaces.shapes.neuro.CorticalSurfaceSet3DInt
- CorticalSurfaceSet3DInt(String, CorticalHemisphereSet3DInt, CorticalHemisphereSet3DInt) - Constructor for class mgui.interfaces.shapes.neuro.CorticalSurfaceSet3DInt
- CorticalThicknessDataTableDialogBox - Class in mgui.interfaces.neuro
- CorticalThicknessDataTableDialogBox() - Constructor for class mgui.interfaces.neuro.CorticalThicknessDataTableDialogBox
- CorticalThicknessDataTableDialogBox(JFrame, CorticalThicknessDataTableOptions) - Constructor for class mgui.interfaces.neuro.CorticalThicknessDataTableDialogBox
- CorticalThicknessDataTableOptions - Class in mgui.interfaces.neuro
- CorticalThicknessDataTableOptions(InterfacePanel) - Constructor for class mgui.interfaces.neuro.CorticalThicknessDataTableOptions
- CorticalThicknessDialogBox - Class in mgui.interfaces.neuro
-
Defines a cortical thickness project
- CorticalThicknessDialogBox() - Constructor for class mgui.interfaces.neuro.CorticalThicknessDialogBox
- CorticalThicknessDialogBox(JFrame, CorticalThicknessOptions) - Constructor for class mgui.interfaces.neuro.CorticalThicknessDialogBox
- CorticalThicknessOptions - Class in mgui.interfaces.neuro
- CorticalThicknessOptions(InterfacePanel) - Constructor for class mgui.interfaces.neuro.CorticalThicknessOptions
- CorticalVolume - Class in mgui.neuro.components.cortical
-
A Volume3D-based representation of a cortical region.
- CorticalVolume - Class in mgui.neuro.components
-
A Volume3D-based representation of a cortical region.
- CorticalVolume(Volume3DInt) - Constructor for class mgui.neuro.components.cortical.CorticalVolume
- CorticalVolume(Volume3DInt) - Constructor for class mgui.neuro.components.CorticalVolume
- CounterClockwise - mgui.geometry.polygon.PolygonFunctions.PolyDirection
- countOccurrences(String, String) - Static method in class mgui.util.StringFunctions
-
Counts the number of times
occoccurs ins. - countTokens() - Method in class mgui.util.PowerfulTokenizer
-
Total number of tokens present in the input string
- countTokens() - Method in class mgui.util.QuotedStringTokenizer
-
Not implemented.
- cp() - Constructor for class mgui.interfaces.unix.UnixFunctions.cp
- creatable_scene_node - Variable in class mgui.interfaces.shapes.Shape3DInt
- create() - Method in class mgui.datasources.DataSource
-
Create a new data source with the given connection parameters.
- create() - Method in class mgui.interfaces.graphs.util.GraphFunctions.EdgeFactory
- create() - Method in class mgui.interfaces.graphs.util.GraphFunctions.NodeFactory
- create_shape - Variable in class mgui.io.foreign.pajek.PajekGraphInputOptions
- create_string - Variable in class mgui.io.foreign.freesurfer.FreesurferSurfaceOutputOptions
- createAttribute(Class<V>, String, Object) - Static method in class mgui.interfaces.xml.XMLFunctions
-
Creates a new
Attributewith a new instance of the given class. - createCompatibleSampleModel(int, int) - Method in class mgui.image.util.WindowedColourModel
- createCompatibleSampleModel(int, int) - Method in class mgui.interfaces.shapes.util.GridSampleModel
-
Creates a new BandedSampleModel with the specified width and height.
- createCompatibleWritableRaster(int, int) - Method in class mgui.image.util.WindowedColourModel
- createDataBuffer() - Method in class mgui.interfaces.shapes.util.GridSampleModel
-
Creates a DataBuffer that corresponds to this BandedSampleModel, The DataBuffer's data type, number of banks, and size will be consistent with this BandedSampleModel.
- createDirs(File) - Static method in class mgui.io.util.IoFunctions
-
Parses
fileand creates any non-existent directories in its path - createGraph - Variable in class mgui.io.domestic.network.CorticalNetworkMatrixInOptions
- createModelChoice() - Method in class au.edu.unsw.cse.Applet3d
-
override this method if we want a choice of models
- createModelChoice() - Method in class au.edu.unsw.cse.AppletDepth
- createModelChoice() - Method in class au.edu.unsw.cse.AppletHull
- createModelChoice() - Method in class au.edu.unsw.cse.AppletPatch
- createNewDataSource(String, String, String, String, String) - Static method in class mgui.datasources.util.DataSourceFunctions
-
Attempts to creates a new data source, with the given parameters.
- createNodeShape(String) - Static method in class mgui.interfaces.graphs.util.GraphFunctions
-
Creates a
Shapeinstance, used to render graph nodes, by parsing a line of text, with the format: - createSceneGraph() - Method in class mgui.interfaces.shapes.util.Texture3DTest
- createSceneGraph2() - Method in class mgui.interfaces.shapes.util.Texture3DTest
- createSceneGraph3() - Method in class mgui.interfaces.shapes.util.Texture3DTest
- createSubsetSampleModel(int[]) - Method in class mgui.interfaces.shapes.util.GridSampleModel
-
Creates a new BandedSampleModel with a subset of the bands of this BandedSampleModel.
- createTempTable(String) - Method in class mgui.datasources.DataSource
-
Creates and returns a temporary table, and adds it to this data source's list of temp tables.
- createToolTip() - Method in class mgui.interfaces.stats.HistogramPlot
- createTransferable(JComponent) - Method in class mgui.interfaces.pipelines.trees.PipelineTreeTransferHandler
- cross(Point3d) - Method in class au.edu.unsw.cse.Point3d
- crosses(Box3D, Box3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines whether the spaces defined by these boxes intersect.
- crosses(LineSegment2D, LineSegment2D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines whether the line segments
l1andl2cross. - crosses(LineSegment2D, Rect2D) - Static method in class mgui.geometry.util.GeometryFunctions
- crosses(Rect2D, Rect2D) - Static method in class mgui.geometry.util.GeometryFunctions
- crosses(Vector2D, Rect2D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines whether
vectorcrossesrect. - crosses(Vector2D, Rect2D, boolean) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines whether
vectorcrossesrect. - crossesPlane(Plane3D) - Method in class mgui.interfaces.shapes.SectionSet3DInt
- crossesPlane(Plane3D) - Method in class mgui.interfaces.shapes.Shape3DInt
-
Convenience method which determines whether this shape cross
plane. - crossesPlane(Shape3D, Plane3D) - Static method in class mgui.geometry.util.GeometryFunctions
-
Determines whether plane
pcrosses boxb. - CSELogo - Class in au.edu.unsw.cse
- CSELogo() - Constructor for class au.edu.unsw.cse.CSELogo
- ctl - Variable in class au.edu.unsw.cse.Bezier3d
- ctl - Variable in class au.edu.unsw.cse.Bspline3d
- ctrl_pressed - Variable in class mgui.interfaces.tools.ToolInputEvent
- Cube - Class in au.edu.unsw.cse
- Cube(Point3d) - Constructor for class au.edu.unsw.cse.Cube
-
Create a cube with centre at specified point and with same radius as last one
- Cube(Point3d, double) - Constructor for class au.edu.unsw.cse.Cube
-
Create a cube with centre at specified point and with given radius
- Cube3D - Class in mgui.geometry
-
Represents a 3 dimensional cube object, using a Point3f, two Vector3f's and a float.
- Cube3D() - Constructor for class mgui.geometry.Cube3D
- Cube3D(Point3f, Point3f, Point3f, float) - Constructor for class mgui.geometry.Cube3D
- Cube3D(Point3f, Vector3f[], float) - Constructor for class mgui.geometry.Cube3D
- current - Variable in class mgui.interfaces.Clipboard
- current - Variable in class mgui.pipelines.PipelineTask
- current - Variable in class mgui.util.OptionList
- current_attribute - Variable in class mgui.io.domestic.attributes.AttributeXMLHandler
- current_attribute_dialog - Variable in class mgui.interfaces.InterfaceWorkspace
- current_attribute_string - Variable in class mgui.io.domestic.attributes.AttributeXMLHandler
- current_class - Variable in class mgui.io.domestic.attributes.AttributeXMLHandler
- current_composites - Variable in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel
- current_dir - Static variable in class mgui.interfaces.InterfaceEnvironment
- current_file - Variable in class mgui.interfaces.gui.FileButton
- current_location - Variable in class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree
- current_location - Variable in class mgui.interfaces.pipelines.trees.PipelineTree
- current_mesh - Variable in class mgui.io.standard.gifti.GiftiInputOptions
- current_plane - Variable in class mgui.interfaces.shapes.util.Plane3DDialog
- current_plot - Variable in class mgui.interfaces.plots.InterfacePlotDisplay
- current_popup - Variable in class mgui.interfaces.neuro.imaging.camino.CaminoPipelineTree
- current_popup - Variable in class mgui.interfaces.pipelines.trees.PipelineTree
- current_process - Variable in class mgui.io.domestic.pipelines.PipelineProcessLibraryXMLHandler
- current_processes - Static variable in class mgui.command.CommandInstance
- current_project - Variable in class mgui.interfaces.projects.InterfaceProjectPanel
- current_query - Variable in class mgui.interfaces.tools.shapes.ToolQueryShape2D
- current_query - Variable in class mgui.interfaces.tools.shapes.ToolQueryShape3D
- current_query - Variable in class mgui.io.domestic.datasources.DataSourceXMLHandler
- current_shape_attribute_dialog - Variable in class mgui.interfaces.InterfaceWorkspace
- current_shape_model - Variable in class mgui.interfaces.InterfaceWorkspace
- current_shape_string - Variable in class mgui.io.domestic.shapes.xml.InterfaceShapeXMLHandler
- current_sql - Variable in class mgui.io.domestic.datasources.DataSourceXMLHandler
- current_system_processes - Variable in class mgui.pipelines.JavaProcess
- current_system_processes - Variable in class mgui.pipelines.NativeProcess
- current_type - Variable in class mgui.io.domestic.shapes.xml.InterfaceShapeXMLHandler
- current_value - Variable in class mgui.interfaces.graphs.AbstractGraphNode
- current_value - Variable in class mgui.interfaces.gui.AbstractProgressUpdater
- current_volume_set - Variable in class mgui.interfaces.shapes.volume.InterfaceVolumeSetPanel
- current_worker_thread - Variable in class mgui.pipelines.PipelineState
- current_xml_type - Variable in class mgui.io.domestic.shapes.xml.InterfaceShapeXMLHandler
- currentDataSource - Variable in class mgui.interfaces.shapes.InterfaceShapesPanel
- currentDataSource - Variable in class mgui.interfaces.shapes.mesh.InterfaceMeshPanel
- currentDataTable - Variable in class mgui.interfaces.shapes.InterfaceShapesPanel
- currentDataTable - Variable in class mgui.interfaces.shapes.mesh.InterfaceMeshPanel
- currentLinkField - Variable in class mgui.interfaces.shapes.InterfaceShapesPanel
- currentLinkField - Variable in class mgui.interfaces.shapes.mesh.InterfaceMeshPanel
- currentMesh - Variable in class mgui.interfaces.shapes.mesh.InterfaceMeshPanel
- currentMesh - Variable in class mgui.io.domestic.shapes.MeshOptionsDialogBox
- currentModel - Variable in class mgui.interfaces.InterfaceDisplayPanel
- currentModel - Variable in class mgui.interfaces.models.InterfaceDynamicModelPanel
- currentPanel - Variable in class mgui.interfaces.InterfaceComboPanel
- CurrentPulse(int, double, double, double) - Constructor for class mgui.models.updaters.PulseTrainUpdater.CurrentPulse
- CurrentPulse(int, double, double, double) - Constructor for class mgui.neuro.updaters.PulseTrainUpdater.CurrentPulse
- currentSample - Variable in class mgui.io.foreign.vol.Volume3DInputStream
- currentScene - Variable in class mgui.interfaces.graphics.InterfaceGraphic3D
- currentSections - Variable in class mgui.interfaces.graphics.InterfaceGraphic2D
- currentSelection - Variable in class mgui.interfaces.graphics.InterfaceGraphic2D
- currentSelection - Variable in class mgui.interfaces.graphics.InterfaceGraphic3D
- currentSelection - Variable in class mgui.interfaces.InterfaceDisplayPanel
- currentSet - Variable in class mgui.interfaces.graphics.InterfaceGraphic3D
- currentSet - Variable in class mgui.morph.sections.InterfaceMorphPanel
- currentSet - Variable in class mgui.morph.sections.InterfaceMorphPanel2
- currentSet - Variable in class mgui.morph.sections.InterfaceRadialRep
- currentSet - Variable in class mgui.morph.sections.InterfaceRadialRep2
- currentSet - Variable in class mgui.neuro.stats.SimpleStatistics
- currentTool - Variable in class mgui.interfaces.frames.SessionFrame
- currentTool - Variable in class mgui.interfaces.graphics.InterfaceGraphic2D
- currentTool - Variable in class mgui.interfaces.graphics.InterfaceGraphic3D
- currentTool - Variable in class mgui.interfaces.graphs.InterfaceGraphDisplay
- currentTool - Variable in class mgui.interfaces.InterfaceDisplayPanel
- currentVolume - Variable in class mgui.interfaces.shapes.volume.InterfaceVolumePanel
- cursor - Variable in class mgui.interfaces.plots.MatrixPlotDataSource
- cursor - Variable in class mgui.interfaces.plots.PlotXYDataSource
- CurveTo - Class in mgui.io.standard.xml.svg
- CurveTo(SVGParser.Mode) - Constructor for class mgui.io.standard.xml.svg.CurveTo
- cut_plane - Variable in class mgui.interfaces.tools.shapes.ToolCutMeshWithPlaneOptions
- cutMeshWithPlane(Mesh3D, Plane3D, InterfaceProgressBar) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Cuts
meshwithplane, creating new faces along the cut seam. - cutMeshWithPlane3(Mesh3D, Plane3D) - Static method in class mgui.geometry.mesh.MeshFunctions
-
Cuts
meshwithplane, creating new faces along the cut seam. - cylinder_appearance - Variable in class mgui.interfaces.shapes.Polygon3DInt
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