Index

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _
All Classes|All Packages

D

data - Variable in class mgui.interfaces.shapes.VertexDataColumn

Data - mgui.io.standard.gifti.GiftiOutputOptions.ColumnFormat

data_attributes - Variable in class mgui.interfaces.plots.sgt.SgtPlotLayout

data_collection - Variable in class mgui.interfaces.plots.sgt.SgtPlotLayout

data_columns - Variable in class mgui.interfaces.shapes.InterfaceShape

data_dims - Variable in class mgui.io.foreign.fsl.FSLVolumeMetadata

data_field - Variable in class mgui.interfaces.datasources.DataFieldOptions

data_file - Variable in class mgui.io.foreign.fsl.FSLVolumeMetadata

data_flavor - Static variable in class mgui.pipelines.InterfacePipeline

data_flavor - Static variable in class mgui.pipelines.PipelineFork

data_flavor - Static variable in class mgui.pipelines.PipelineProcessInstance

data_items - Variable in class mgui.io.domestic.datasources.ExportDataTableOptions

data_size - Variable in class mgui.image.util.WindowedColourModel

data_sizes - Variable in class mgui.interfaces.shapes.VectorSet3DInt

data_source - Variable in class mgui.datasources.DataTableSet

data_source - Variable in class mgui.datasources.LinkedDataStream

data_source - Variable in class mgui.interfaces.neuro.CorticalThicknessDataTableOptions

data_source - Variable in class mgui.interfaces.plots.mgui.MatrixImagePlot

data_source - Variable in class mgui.interfaces.plots.sgt.SgtMultilinePlot

data_source - Variable in class mgui.interfaces.plots.sgt.SgtScatterplot

data_source - Variable in class mgui.io.domestic.datasources.DataSourceOutOptions

data_source - Variable in class mgui.io.domestic.datasources.DataSourceXMLHandler

data_source - Variable in class mgui.io.domestic.datasources.ExportDataTableOptions

data_source - Variable in class mgui.io.domestic.datasources.ImportDataTableLoader

data_table - Variable in class mgui.datasources.LinkedDataStream

data_table - Variable in class mgui.interfaces.neuro.CorticalThicknessDataTableOptions

data_type - Variable in class mgui.interfaces.neuro.CorticalThicknessOptions

data_type - Variable in class mgui.io.domestic.shapes.SurfaceDataInputOptions

data_type - Variable in class mgui.io.foreign.fsl.FSLVolumeMetadata

data_type_string - Variable in class mgui.io.standard.nifti.Nifti1Dataset

DataAndRGB - mgui.io.standard.gifti.GiftiOutputOptions.ColumnFormat

DataAndRGBA - mgui.io.standard.gifti.GiftiOutputOptions.ColumnFormat

DataBridge<T extends MguiNumber> - Class in mgui.interfaces.io

Represents a data bridge, combining an input stream and an output stream.

DataBridge() - Constructor for class mgui.interfaces.io.DataBridge

DataBridgeNamedXY<T extends MguiNumber> - Class in mgui.interfaces.io

DataBridgeNamedXY(int, List<String>) - Constructor for class mgui.interfaces.io.DataBridgeNamedXY

DataBridgeNamedXY(int, T, List<String>) - Constructor for class mgui.interfaces.io.DataBridgeNamedXY

DataBridgeXY<T extends MguiNumber> - Class in mgui.interfaces.io

Acts as a data bridge for XY data, where X holds a single value and each Y channel has an array of values corresponding to that X.

DataBridgeXY(int) - Constructor for class mgui.interfaces.io.DataBridgeXY

DataBridgeXY(int, T) - Constructor for class mgui.interfaces.io.DataBridgeXY

DataBuffer<T extends MguiNumber> - Interface in mgui.interfaces.io

Represents a data buffer of number type T.

dataChanged(MguiPlotEvent) - Method in class mgui.interfaces.plots.mgui.InterfacePlotMgui

Responds to a change in this plot's data

dataChanged(MguiPlotEvent) - Method in class mgui.interfaces.plots.mgui.MatrixImagePlot

DataConnection - Class in mgui.datasources

Specifies a basic JDBC database connection, including: JDBC driver URL Connection name File location Login Password //TODO implement security on this

DataConnection() - Constructor for class mgui.datasources.DataConnection

DataConnection(String) - Constructor for class mgui.datasources.DataConnection

dataDims - Variable in class mgui.interfaces.shapes.volume.VolumeMaskDialog_old

DataField - Class in mgui.datasources

Object to specify a field data type and length.

DataField() - Constructor for class mgui.datasources.DataField

DataField(String, int) - Constructor for class mgui.datasources.DataField

DataField(String, int, int) - Constructor for class mgui.datasources.DataField

dataFieldChanged(DataFieldEvent) - Method in interface mgui.datasources.DataFieldListener

dataFieldChanged(DataFieldEvent) - Method in class mgui.datasources.DataTable

DataFieldEvent - Class in mgui.datasources

Event on a data field

DataFieldEvent(DataField, DataFieldEvent.EventCode) - Constructor for class mgui.datasources.DataFieldEvent

DataFieldEvent.EventCode - Enum in mgui.datasources

DataFieldListener - Interface in mgui.datasources

Listener on a data field

DataFieldOptions - Class in mgui.interfaces.datasources

Parameters defining a data field.

DataFieldOptions(DataTable) - Constructor for class mgui.interfaces.datasources.DataFieldOptions

DataFieldTreeNode - Class in mgui.interfaces.datasources

A tree node specialized for a DataField object.

DataFieldTreeNode() - Constructor for class mgui.interfaces.datasources.DataFieldTreeNode

DataFieldTreeNode(String) - Constructor for class mgui.interfaces.datasources.DataFieldTreeNode

dataFile - Variable in class mgui.interfaces.shapes.Volume3DInt

dataFile - Variable in class mgui.io.FileLoader

dataFile - Variable in class mgui.io.FileWriter

DataFileInterface - Class in mgui.io

Deprecated.

Use FileLoader and FileWriter classes

DataFileInterface() - Constructor for class mgui.io.DataFileInterface

Deprecated.

DataIndex<T extends java.lang.Comparable<T>> - Class in mgui.datasources

Class to index specified fields in a table.

DataIndex(String) - Constructor for class mgui.datasources.DataIndex

dataInputEvent(DataInputStream<MguiDouble>) - Method in class mgui.interfaces.plots.osp.InterfacePlotOsp

dataInputEvent(DataInputStream<MguiDouble>) - Method in class mgui.interfaces.plots.osp.InterfaceStripChart

dataInputEvent(DataInputStream<T>) - Method in interface mgui.interfaces.io.DataInputStreamListener

dataInputEvent(DataInputStream<T>) - Method in interface mgui.interfaces.io.InterfaceDataSensor

React to a signal emission.

dataInputEvent(DataInputStream<T>) - Method in class mgui.interfaces.plots.InterfacePlot

DataInputStream<T extends MguiNumber> - Interface in mgui.interfaces.io

Represents an input stream of a specific number type.

DataInputStreamListener<T extends MguiNumber> - Interface in mgui.interfaces.io

Interface for objects which listen to events from an input stream.

DataInputStreamNamedXY<T extends MguiNumber> - Interface in mgui.interfaces.io

DataInputStreamXY<T extends MguiNumber> - Interface in mgui.interfaces.io

Represents an XY input stream with one X and multiple Y channels.

dataMax - Variable in class mgui.io.domestic.shapes.VolumeFileLoader

dataMax - Variable in class mgui.io.foreign.vol.VolumeInputOptions

dataMax - Variable in class mgui.stats.Histogram

dataMin - Variable in class mgui.io.domestic.shapes.VolumeFileLoader

dataMin - Variable in class mgui.io.foreign.vol.VolumeInputOptions

dataMin - Variable in class mgui.stats.Histogram

dataN - Variable in class mgui.stats.Histogram

dataOpsMesh - Variable in class mgui.interfaces.shapes.mesh.InterfaceMeshPanel

DataOutputStream<T extends MguiNumber> - Interface in mgui.interfaces.io

Represents an general output stream in modelGUI, of a specific data type.

DataOutputStreamNamedXY<T extends MguiNumber> - Interface in mgui.interfaces.io

Represents an XY output stream whose Y channels are named.

DataOutputStreamXY<T extends MguiNumber> - Interface in mgui.interfaces.io

Represents an XY output stream with one X and multiple Y channels.

DataQuery - Class in mgui.datasources

Represents an SQL query.

DataQuery() - Constructor for class mgui.datasources.DataQuery

DataQuery(String, DataSource, String) - Constructor for class mgui.datasources.DataQuery

DataQuery(DataSource, String) - Constructor for class mgui.datasources.DataQuery

DataQueryOptions - Class in mgui.interfaces.datasources

Options for a data query

DataQueryOptions() - Constructor for class mgui.interfaces.datasources.DataQueryOptions

DataQueryOptions(DataQuery) - Constructor for class mgui.interfaces.datasources.DataQueryOptions

DataRecordSet - Class in mgui.datasources

Stores an open connection with a data source based upon an SQL specification.

DataRecordSet() - Constructor for class mgui.datasources.DataRecordSet

DataRecordSet(DataSource) - Constructor for class mgui.datasources.DataRecordSet

dataset - Variable in class mgui.io.foreign.wunil.WunilVolumeLoader

DataSet - Interface in mgui.datasources

Interface for objects acting as a data set.

DataSetTreeNode - Class in mgui.interfaces.datasources

A tree node specialized for a DataSet object.

DataSetTreeNode() - Constructor for class mgui.interfaces.datasources.DataSetTreeNode

DataSetTreeNode(String) - Constructor for class mgui.interfaces.datasources.DataSetTreeNode

dataSource - Variable in class mgui.datasources.DataRecordSet

dataSource - Variable in class mgui.datasources.DataTable

DataSource - Class in mgui.datasources

Acts as a port into the JDBC interface.

DataSource() - Constructor for class mgui.datasources.DataSource

DataSource(String) - Constructor for class mgui.datasources.DataSource

DataSource(DataConnection) - Constructor for class mgui.datasources.DataSource

DataSourceCommands - Class in mgui.datasources.util

Utility for defining a JDBC driver with login and encrypted password.

DataSourceCommands() - Constructor for class mgui.datasources.util.DataSourceCommands

DataSourceDialogBox - Class in mgui.interfaces.datasources

Dialog box for defining or editing a DataSource object.

DataSourceDialogBox(JFrame, DataSourceOptions) - Constructor for class mgui.interfaces.datasources.DataSourceDialogBox

DataSourceDialogPanel - Class in mgui.interfaces.datasources

DataSourceDialogPanel() - Constructor for class mgui.interfaces.datasources.DataSourceDialogPanel

DataSourceDriver - Class in mgui.datasources

Defines a JDBC driver for a DataConnection.

DataSourceDriver() - Constructor for class mgui.datasources.DataSourceDriver

DataSourceDriver(String, String, String) - Constructor for class mgui.datasources.DataSourceDriver

DataSourceDriver(String, String, String, String, String) - Constructor for class mgui.datasources.DataSourceDriver

DataSourceDriver(String, String, String, String, String, boolean) - Constructor for class mgui.datasources.DataSourceDriver

DataSourceDriverDialogBox - Class in mgui.interfaces.datasources

Dialog box which allows user to set up the data source drivers, i.e., with login, url, and password information.

DataSourceDriverDialogBox() - Constructor for class mgui.interfaces.datasources.DataSourceDriverDialogBox

DataSourceDriverDialogBox(JFrame, DataSourceDriverOptions) - Constructor for class mgui.interfaces.datasources.DataSourceDriverDialogBox

DataSourceDriverLoader - Class in mgui.io.domestic.datasources

Loader for a data source (JDBC) driver specification file.

DataSourceDriverLoader() - Constructor for class mgui.io.domestic.datasources.DataSourceDriverLoader

DataSourceDriverOptions - Class in mgui.interfaces.datasources

Options which specify a JDBC data source driver.

DataSourceDriverOptions() - Constructor for class mgui.interfaces.datasources.DataSourceDriverOptions

DataSourceDrivers - Class in mgui.datasources

Holds a list of DataSourceDriver objects.

DataSourceDrivers() - Constructor for class mgui.datasources.DataSourceDrivers

DataSourceDriverWriter - Class in mgui.io.domestic.datasources

Writer for a data source (JDBC) driver file.

DataSourceDriverWriter() - Constructor for class mgui.io.domestic.datasources.DataSourceDriverWriter

dataSourceEmission(DataSourceEvent) - Method in class mgui.interfaces.io.DataBridge

dataSourceEmission(DataSourceEvent) - Method in class mgui.interfaces.io.DataBridgeXY

dataSourceEmission(DataSourceEvent) - Method in interface mgui.interfaces.io.DataSourceListener

Responds to a signal emission from a data source.

dataSourceEmission(DataSourceEvent) - Method in class mgui.interfaces.plots.mgui.MatrixImagePlot

dataSourceEmission(DataSourceEvent) - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlot

dataSourceEmission(DataSourceEvent) - Method in class mgui.interfaces.plots.sgt.SgtScatterplot

DataSourceEvent - Class in mgui.interfaces.events

DataSourceEvent - Class in mgui.interfaces.io

Event on an InterfaceDataSource object.

DataSourceEvent(DataSource) - Constructor for class mgui.interfaces.events.DataSourceEvent

DataSourceEvent(InterfaceDataSource<?>) - Constructor for class mgui.interfaces.io.DataSourceEvent

DataSourceEvent(InterfaceDataSource<?>, int) - Constructor for class mgui.interfaces.io.DataSourceEvent

DataSourceException - Exception in mgui.datasources

An exception on a data source object.

DataSourceException() - Constructor for exception mgui.datasources.DataSourceException

DataSourceException(String) - Constructor for exception mgui.datasources.DataSourceException

DataSourceFunctions - Class in mgui.datasources.util

DataSourceFunctions() - Constructor for class mgui.datasources.util.DataSourceFunctions

DataSourceItem - Interface in mgui.datasources

An item (i.e., table or query) in a DataSource.

DataSourceLinkDialogBox - Class in mgui.interfaces.shapes.datasources

Dialog box for specifying a vertex data column link to a data source.

DataSourceLinkDialogBox(JFrame, InterfaceOptions) - Constructor for class mgui.interfaces.shapes.datasources.DataSourceLinkDialogBox

DataSourceLinkOptions - Class in mgui.interfaces.shapes.datasources

Options for specifying a vertex data column link to a data source.

DataSourceLinkOptions(VertexDataColumn) - Constructor for class mgui.interfaces.shapes.datasources.DataSourceLinkOptions

DataSourceLinkOptions(VertexDataColumn, String) - Constructor for class mgui.interfaces.shapes.datasources.DataSourceLinkOptions

DataSourceListDialogPanel - Class in mgui.interfaces.datasources

Panel which queries and lists the available databases in a given environment.

DataSourceListDialogPanel() - Constructor for class mgui.interfaces.datasources.DataSourceListDialogPanel

DataSourceListDialogPanel(String) - Constructor for class mgui.interfaces.datasources.DataSourceListDialogPanel

DataSourceListDialogPanel(DataSourceDriver) - Constructor for class mgui.interfaces.datasources.DataSourceListDialogPanel

DataSourceListener - Interface in mgui.interfaces.datasources

Defines a Listener interface for a DataSource object

DataSourceListener - Interface in mgui.interfaces.io

Listens to a data source for an emission event.

DataSourceLoader - Class in mgui.io.domestic.datasources

Loads a Data Source object.

DataSourceLoader() - Constructor for class mgui.io.domestic.datasources.DataSourceLoader

DataSourceLoader(File) - Constructor for class mgui.io.domestic.datasources.DataSourceLoader

DataSourceLoader(File, DataSourceLoader.FileType) - Constructor for class mgui.io.domestic.datasources.DataSourceLoader

DataSourceLoader(DataSourceLoader.FileType) - Constructor for class mgui.io.domestic.datasources.DataSourceLoader

DataSourceLoader.FileType - Enum in mgui.io.domestic.datasources

DataSourceOptions - Class in mgui.interfaces.datasources

DataSourceOptions(DataSource) - Constructor for class mgui.interfaces.datasources.DataSourceOptions

DataSourceOutOptions - Class in mgui.io.domestic.datasources

Specifies options for writing a Data Source to file.

DataSourceOutOptions() - Constructor for class mgui.io.domestic.datasources.DataSourceOutOptions

DataSourceOutOptions(DataSource) - Constructor for class mgui.io.domestic.datasources.DataSourceOutOptions

dataSourceReset(DataSourceEvent) - Method in class mgui.interfaces.io.DataBridgeXY

dataSourceReset(DataSourceEvent) - Method in interface mgui.interfaces.io.DataSourceListener

Resets this listener in response to a reset of the data source.

dataSourceReset(DataSourceEvent) - Method in class mgui.interfaces.plots.mgui.MatrixImagePlot

dataSourceReset(DataSourceEvent) - Method in class mgui.interfaces.plots.sgt.SgtMultilinePlot

dataSourceReset(DataSourceEvent) - Method in class mgui.interfaces.plots.sgt.SgtScatterplot

dataSources - Variable in class mgui.interfaces.InterfaceWorkspace

dataSourceUpdated(DataSourceEvent) - Method in interface mgui.interfaces.datasources.DataSourceListener

DataSourceWriter - Class in mgui.io.domestic.datasources

Writes a Data Source object to file.

DataSourceWriter() - Constructor for class mgui.io.domestic.datasources.DataSourceWriter

DataSourceWriter(File) - Constructor for class mgui.io.domestic.datasources.DataSourceWriter

DataSourceWriter(File, DataSourceWriter.FileType) - Constructor for class mgui.io.domestic.datasources.DataSourceWriter

DataSourceWriter(DataSourceWriter.FileType) - Constructor for class mgui.io.domestic.datasources.DataSourceWriter

DataSourceWriter.FileType - Enum in mgui.io.domestic.datasources

DataSourceXMLHandler - Class in mgui.io.domestic.datasources

XML (SAX) handler for loading XML-format data source files.

DataSourceXMLHandler() - Constructor for class mgui.io.domestic.datasources.DataSourceXMLHandler

DataTable - Class in mgui.datasources

General data table object specifying the organization of data into fields.

DataTable - mgui.interfaces.graphics.InterfaceGraphic.GraphicType

DataTable() - Constructor for class mgui.datasources.DataTable

DataTable(String) - Constructor for class mgui.datasources.DataTable

DataTableDialog - Class in mgui.interfaces.datasources

Dialog box for creating or managing a data table.

DataTableDialog() - Constructor for class mgui.interfaces.datasources.DataTableDialog

DataTableException - Exception in mgui.interfaces.tables

DataTableException(String) - Constructor for exception mgui.interfaces.tables.DataTableException

DataTableModel - Class in mgui.interfaces.datasources

Class extending AbstractTableModel to act as a model for JTable, and in particular for use by InterfaceDataTable.

DataTableModel() - Constructor for class mgui.interfaces.datasources.DataTableModel

DataTableModel(DataRecordSet) - Constructor for class mgui.interfaces.datasources.DataTableModel

DataTableModel(DataSourceItem) - Constructor for class mgui.interfaces.datasources.DataTableModel

DataTableModel(DataSource, DataSourceItem) - Constructor for class mgui.interfaces.datasources.DataTableModel

DataTableOptions - Class in mgui.interfaces.datasources

Options for a new data table.

DataTableOptions() - Constructor for class mgui.interfaces.datasources.DataTableOptions

DataTableOptions(DataSource) - Constructor for class mgui.interfaces.datasources.DataTableOptions

DataTableOptions(DataSource, DataTable) - Constructor for class mgui.interfaces.datasources.DataTableOptions

DataTableSet - Class in mgui.datasources

Object stores a list of DataTable objects, all representing tables in a single DataSource

DataTableSet() - Constructor for class mgui.datasources.DataTableSet

DataTableSet(DataSource) - Constructor for class mgui.datasources.DataTableSet

datatype - Variable in class mgui.io.domestic.shapes.VolumeOutputOptions

datatype - Variable in class mgui.io.standard.nifti.Nifti1Dataset

dataType - Variable in class mgui.interfaces.io.VolumeFileWriteOptions

dataType - Variable in class mgui.io.foreign.vol.VolumeInputOptions

DataType - Class in mgui.datasources

Holds information about a given data type

DataType(String, int, String, int) - Constructor for class mgui.datasources.DataType

DataTypeChanged - mgui.datasources.DataFieldEvent.EventCode

dataTypes - Static variable in class mgui.datasources.DataTypes

DataTypes - Class in mgui.datasources

Class to provide functions for testing and comparing data types.

DataTypes() - Constructor for class mgui.datasources.DataTypes

dataURL - Variable in class mgui.io.FileLoader

dataURL - Variable in class mgui.io.FileWriter

date - Variable in class mgui.io.foreign.caret.CaretSurfaceInfo

DATE - Static variable in class mgui.datasources.DataTypes

db_name - Variable in class mgui.io.standard.nifti.Nifti1Dataset

deactivate() - Method in class mgui.interfaces.tools.dialogs.DialogTool

deactivate() - Method in class mgui.interfaces.tools.graphics.Tool2D

deactivate() - Method in class mgui.interfaces.tools.graphics.Tool3D

deactivate() - Method in class mgui.interfaces.tools.graphs.ToolGraphImage

deactivate() - Method in class mgui.interfaces.tools.graphs.ToolGraphTransform

deactivate() - Method in class mgui.interfaces.tools.shapes.ToolRuler2D

deactivate() - Method in class mgui.interfaces.tools.shapes.ToolSelectNodesWithPolygon

deactivate() - Method in class mgui.interfaces.tools.shapes.ToolSelectRegionBoundaryNodes

deactivate() - Method in interface mgui.interfaces.tools.Tool

Should be called once a tool is deactivated; instances of Tool should perform clean-up activities here.

Debug - mgui.interfaces.logs.LoggingType

debug_index - Static variable in class mgui.geometry.neuro.mesh.NeuroMeshFunctions

debug_output_dir - Variable in class mgui.geometry.neuro.mesh.ScalpAndSkullModelOptions

DecayFunction - Class in mgui.models.dynamic.functions

DecayFunction() - Constructor for class mgui.models.dynamic.functions.DecayFunction

DECIMAL - Static variable in class mgui.datasources.DataTypes

decimal_places - Variable in class mgui.io.standard.gifti.GiftiOutputOptions

decimals - Variable in class mgui.interfaces.maps.ContinuousColourBar

decimate(Mesh3D, String) - Method in class mgui.geometry.mesh.MeshEngine

decimateByDistance(Mesh3D, Mesh3D, double) - Static method in class mgui.geometry.mesh.MeshFunctions

Decimates this mesh by merging multiple nodes into a single node if they are separated by less than .

DecimateByDistance(Mesh3D, Mesh3D) - Method in class mgui.geometry.mesh.MeshEngine

Calls the function DecimateByDistance in the MeshFunctions function class, using parameters specified in the AttributeList "Decimate By Distance"

decimateNeighbours(Mesh3D) - Static method in class mgui.geometry.mesh.MeshDecimation

Decimates by removing nodes one-by-one, skipping boundary nodes: 1.

decimateSchroeder(Mesh3D) - Method in class mgui.geometry.mesh.MeshEngine

decimateVTK(Mesh3D, double, double, int, boolean) - Static method in class mgui.geometry.mesh.MeshDecimation

Decimates a mesh as decribed in:

decodeDatatype(short) - Method in class mgui.io.standard.nifti.Nifti1Dataset

Decode the nifti datatype codes

decodeIntent(short) - Method in class mgui.io.standard.nifti.Nifti1Dataset

Decode the nifti intent codes

decodeSliceOrder(short) - Method in class mgui.io.standard.nifti.Nifti1Dataset

Decode the nifti slice order codes

decodeUnits(short) - Method in class mgui.io.standard.nifti.Nifti1Dataset

Decode the nifti unit codes

decodeXform(short) - Method in class mgui.io.standard.nifti.Nifti1Dataset

Decode the nifti xform codes

decompressGZipped(byte[]) - Static method in class mgui.io.util.IoFunctions

Decompresses a gzipped byte array.

decompressZipped(byte[]) - Static method in class mgui.io.util.IoFunctions

Decompresses a zipped byte array.

DEFAULT_2 - Static variable in class mgui.interfaces.maps.ContinuousColourMap

DEFAULT_3 - Static variable in class mgui.interfaces.maps.ContinuousColourMap

default_logging_type - Variable in class mgui.command.CommandInstance

default_unit - Variable in class mgui.interfaces.shapes.ShapeModel3D

default_value - Variable in class mgui.pipelines.TaskParameter

defaultColor - Variable in class au.edu.unsw.cse.Object3dList

defaultColor - Variable in class au.edu.unsw.cse.View3d

DefaultGraph - Class in mgui.interfaces.graphs

Default implementation of a Graph in ModelGUI.

DefaultGraph() - Constructor for class mgui.interfaces.graphs.DefaultGraph

DefaultGraph(String) - Constructor for class mgui.interfaces.graphs.DefaultGraph

DefaultGraph(InterfaceAbstractGraph) - Constructor for class mgui.interfaces.graphs.DefaultGraph

Construct a new graph as a copy of graph.

DefaultGraphEdge - Class in mgui.interfaces.graphs

Default implementation of a Graph edge.

DefaultGraphEdge() - Constructor for class mgui.interfaces.graphs.DefaultGraphEdge

DefaultGraphEdge(AbstractGraphNode, AbstractGraphNode) - Constructor for class mgui.interfaces.graphs.DefaultGraphEdge

DefaultGraphEdge(AbstractGraphNode, AbstractGraphNode, double) - Constructor for class mgui.interfaces.graphs.DefaultGraphEdge

DefaultGraphEdge(AbstractGraphNode, AbstractGraphNode, EdgeType) - Constructor for class mgui.interfaces.graphs.DefaultGraphEdge

DefaultGraphFileLoader - Class in mgui.io.domestic.graphs

Loads a graph stored in domestic XML format.

DefaultGraphFileLoader() - Constructor for class mgui.io.domestic.graphs.DefaultGraphFileLoader

DefaultGraphNode - Class in mgui.interfaces.graphs

Default implementation of a Graph in modelGUI.

DefaultGraphNode() - Constructor for class mgui.interfaces.graphs.DefaultGraphNode

DefaultGraphNode(String) - Constructor for class mgui.interfaces.graphs.DefaultGraphNode

DefaultIOOptions - Class in mgui.io

Implements a default IO options object, specifying files and a generic file chooser.

DefaultIOOptions() - Constructor for class mgui.io.DefaultIOOptions

DefaultMatrixFileLoader - Class in mgui.io.domestic.variables

Default implementation of a matrix loader.

DefaultMatrixFileLoader() - Constructor for class mgui.io.domestic.variables.DefaultMatrixFileLoader

DefaultMatrixFileLoader(File) - Constructor for class mgui.io.domestic.variables.DefaultMatrixFileLoader

DefaultMatrixFileWriter - Class in mgui.io.domestic.variables

DefaultMatrixFileWriter() - Constructor for class mgui.io.domestic.variables.DefaultMatrixFileWriter

DefaultMatrixFileWriter(File) - Constructor for class mgui.io.domestic.variables.DefaultMatrixFileWriter

DefaultMatrixFileWriter(File, int) - Constructor for class mgui.io.domestic.variables.DefaultMatrixFileWriter

defaultModel() - Method in class au.edu.unsw.cse.Applet3d

defaultModel to display

defaultModel() - Method in class au.edu.unsw.cse.AppletDepth

defaultModel to display

defaultModel() - Method in class au.edu.unsw.cse.AppletHull

defaultModel to display

defaultModel() - Method in class au.edu.unsw.cse.AppletPatch

defaultModel to display

defaultTool - Variable in class mgui.interfaces.graphics.InterfaceGraphic2D

defaultTool - Variable in class mgui.interfaces.graphics.InterfaceGraphic3D

defaultTool - Variable in class mgui.interfaces.graphs.InterfaceGraphDisplay

define_jdbc_driver() - Method in class mgui.datasources.util.DataSourceCommands

Defines a JDBC driver file (*.driver) with login and encrypted password.

delay - Variable in class au.edu.unsw.cse.AnimationWidget

delay - Variable in class au.edu.unsw.cse.Object3dList

delay - Variable in class mgui.models.events.SimpleEvent

delay - Variable in class mgui.neuro.components.simple.SimpleEvent

delete() - Method in class mgui.datasources.DataSource

Deletes an existing data source with the given connection parameters.

deleteDir(File) - Static method in class mgui.io.util.IoFunctions

Deletes this directory and all of its subdirectories.

deleteFaces(Object3dList, int, int) - Method in class au.edu.unsw.cse.DivideAndConquer

mark as deleted faces that can see a point

deleteFaces2D(Object3dList, int, int, PointStack) - Method in class au.edu.unsw.cse.DivideAndConquer

mark as deleted faces that can see a point

deleteRecords(int[]) - Method in class mgui.datasources.DataRecordSet

Attempts to delete the specified records from the underlying table.

deleteRows(int[]) - Method in class mgui.interfaces.datasources.DataTableModel

Attempts to delete the specified rows from the underlying data source item

deleteTempFiles() - Static method in class mgui.neuro.imaging.camino.CaminoFunctions

deleteTempFiles() - Method in class mgui.pipelines.PipelineState

delim - Variable in class mgui.io.domestic.maps.NameMapInOptions

delim - Variable in class mgui.io.domestic.maps.NameMapOutOptions

delimiter - Variable in class mgui.io.domestic.datasources.ExportDataTableTextOptions

delimiter - Variable in class mgui.io.domestic.datasources.ImportDataTableTextOptions

delimiter - Variable in class mgui.io.domestic.variables.MatrixInOptions

delimiter - Variable in class mgui.io.domestic.variables.MatrixOutOptions

delimiter - Variable in class mgui.io.domestic.variables.StringVectorInOptions

delimiter - Variable in class mgui.io.standard.xml.XMLOutputOptions

deltax - Variable in class au.edu.unsw.cse.MouseInfo

deltax2 - Variable in class au.edu.unsw.cse.MouseInfo

deltax3 - Variable in class au.edu.unsw.cse.MouseInfo

deltay - Variable in class au.edu.unsw.cse.MouseInfo

deltay2 - Variable in class au.edu.unsw.cse.MouseInfo

deltay3 - Variable in class au.edu.unsw.cse.MouseInfo

Dendrite - Interface in mgui.neuro.components

dendrites - Variable in class mgui.neuro.components.AbstractNeuron

Dendrites - Interface in mgui.neuro.components

Dense1 - mgui.io.foreign.freesurfer.FreesurferVertexDataInOptions.Format

Dense2 - mgui.io.foreign.freesurfer.FreesurferVertexDataInOptions.Format

depth - Variable in class mgui.interfaces.shapes.util.Image3DTexture

depth - Variable in class mgui.interfaces.shapes.util.TestTexture

depth(Point3d) - Method in class au.edu.unsw.cse.View3dInfo

depthBias(View3d) - Method in class au.edu.unsw.cse.Axes

depthBias(View3d) - Method in class au.edu.unsw.cse.Cube

depthBias(View3d) - Method in interface au.edu.unsw.cse.Object3d

Depth bias - used to adjust depth in depth sort so that front facing faces appear in front of back faces

depthBias(View3d) - Method in class au.edu.unsw.cse.Object3dAdaptor

depthBias(View3d) - Method in class au.edu.unsw.cse.Point3dObject3d

depthBias(View3d) - Method in class au.edu.unsw.cse.Points3d

depthBias(View3d) - Method in class au.edu.unsw.cse.Triangle3d

depthBias(View3d) - Method in class au.edu.unsw.cse.Triangle3dPlus

deregister() - Method in class mgui.interfaces.gui.AbstractProgressUpdater

deregister() - Method in class mgui.interfaces.gui.InterfaceProgressBar

Deregisters this progress bar with its display panel (i.e., by calling deregisterProgressBar()).

deregister() - Method in interface mgui.interfaces.ProgressUpdater

Deregisters this progress updater with the ModelGUI session

deregisterCamera(Camera3D) - Method in class mgui.interfaces.shapes.ShapeSet3DInt

deregisterCameraListener(Camera3D) - Method in class mgui.interfaces.shapes.Shape3DInt

deregisterCameraListener(Camera3D) - Method in class mgui.interfaces.shapes.Volume3DInt

deregisterCameras(ArrayList<Camera3D>) - Method in class mgui.interfaces.shapes.ShapeSet3DInt

deregisterModelClip(ModelClip) - Method in class mgui.interfaces.shapes.util.ClipPlane

deregisterPipelineProcessLibrary(String) - Static method in class mgui.interfaces.InterfaceEnvironment

Deregisters the given library.

deregisterProcess(CaminoProcess) - Static method in class mgui.neuro.imaging.camino.CaminoEnvironment

deregisterProgressBar() - Method in class mgui.interfaces.InterfaceDisplayPanel

deregisterProgressBar() - Method in class mgui.interfaces.InterfaceStatusBarPanel

deregisterSubmenus(JMenu) - Method in class mgui.interfaces.menus.InterfacePopupMenu

deregisterTool(Tool) - Method in class mgui.interfaces.tools.shapes.util.RulerDialog

Deregisters a ruler tool with this dialog.

descrip - Variable in class mgui.io.standard.nifti.Nifti1Dataset

deselect(int) - Method in class mgui.interfaces.shapes.mesh.VertexSelection

deselect(ArrayList<Integer>) - Method in class mgui.interfaces.shapes.mesh.VertexSelection

DESELECT - Static variable in class mgui.interfaces.tools.shapes.ToolSelectShape2D

DESELECT - Static variable in class mgui.interfaces.tools.shapes.ToolSelectShape3D

destroy() - Method in class mgui.datasources.DataSource

destroy() - Method in class mgui.interfaces.AbstractInterfaceObject

destroy() - Method in class mgui.interfaces.console.InterfaceConsoleDisplay

destroy() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D

destroy() - Method in class mgui.interfaces.graphics.InterfaceGraphic3D

destroy() - Method in class mgui.interfaces.graphics.InterfaceGraphicWindow

destroy() - Method in class mgui.interfaces.graphs.InterfaceAbstractGraph

destroy() - Method in class mgui.interfaces.InterfaceDisplayPanel

destroy() - Method in interface mgui.interfaces.InterfaceObject

Destroy this object (prepare it to be removed from memory)

destroy() - Method in class mgui.interfaces.InterfaceOptions

destroy() - Method in class mgui.interfaces.InterfacePanel

destroy() - Method in class mgui.interfaces.InterfaceSplitPanel

destroy() - Method in interface mgui.interfaces.io.InterfaceDataSensor

destroy() - Method in class mgui.interfaces.io.InterfaceFile

destroy() - Method in class mgui.interfaces.plots.InterfacePlot

destroy() - Method in class mgui.interfaces.plots.mgui.PlotMap2D

destroy() - Method in class mgui.interfaces.plots.sgt.SgtPlotLayout

destroy() - Method in class mgui.interfaces.queries.InterfaceQuery

destroy() - Method in class mgui.interfaces.shapes.InterfaceSectionSetPanel

destroy() - Method in class mgui.interfaces.shapes.selection.ShapeSelectionSet

destroy() - Method in class mgui.interfaces.shapes.Shape2DInt

destroy() - Method in class mgui.interfaces.shapes.Shape3DInt

destroy() - Method in class mgui.interfaces.shapes.ShapeModel3D

destroy() - Method in class mgui.interfaces.shapes.ShapeSceneNode

destroy() - Method in class mgui.interfaces.shapes.ShapeSet2DInt

destroy() - Method in class mgui.interfaces.shapes.ShapeSet3DInt

destroy() - Method in interface mgui.interfaces.shapes.util.ShapeListener

Destroys this listener.

destroy() - Method in class mgui.interfaces.tables.InterfaceTableModel

destroy() - Method in class mgui.interfaces.trees.InterfaceTreeNode

destroy() - Method in class mgui.models.dynamic.functions.Function

destroy() - Method in class mgui.models.environments.AbstractEnvironmentDataSource

destroy() - Method in class mgui.models.environments.SimpleEnvironment

destroy() - Method in class mgui.pipelines.PipelineProcess

destroy() - Method in class mgui.pipelines.TaskParameterInstance

destroy(boolean) - Method in class mgui.interfaces.trees.InterfaceTreeNode

destroy(ShapeEvent) - Method in class mgui.interfaces.shapes.Shape2DInt

destroyAllChildren() - Method in class mgui.interfaces.trees.InterfaceTreeNode

destroyed - Variable in class mgui.interfaces.io.InterfaceFile

Destroyed - mgui.interfaces.graphics.GraphicEvent.EventType

Destroyed - mgui.interfaces.graphics.WindowEvent.EventType

destroySectionNode(InterfaceGraphic2D) - Method in class mgui.interfaces.shapes.ShapeSet3DInt

destroySectionNode(InterfaceGraphic2D) - Method in class mgui.interfaces.shapes.volume.Volume3DRenderer

detach() - Method in class mgui.interfaces.pipelines.trees.TaskTreeNode

Detect - mgui.io.domestic.datasources.DataSourceLoader.FileType

Detect - mgui.io.domestic.network.CorticalNetworkMatrixInOptions.Format

Determinate - mgui.interfaces.ProgressUpdater.Mode

dialog - Variable in class mgui.interfaces.io.InterfaceIOType

dialog_class - Variable in class mgui.interfaces.graphics.video.VideoTaskType

DialogActionEvent - Class in mgui.interfaces.events

DialogActionEvent(InterfaceDialogBox, int, String) - Constructor for class mgui.interfaces.events.DialogActionEvent

DialogTool - Class in mgui.interfaces.tools.dialogs

Abstract class to be inherited by all tools which operate using a modal dialog box.

DialogTool() - Constructor for class mgui.interfaces.tools.dialogs.DialogTool

DialogToolDialogBox - Class in mgui.interfaces.tools.dialogs

DialogToolDialogBox(JFrame, InterfaceOptions) - Constructor for class mgui.interfaces.tools.dialogs.DialogToolDialogBox

diameter - Variable in class mgui.neuro.components.compartments.SimpleCompartment

dim - Variable in class mgui.io.foreign.trackvis.TrackVisTractHeader

dim - Variable in class mgui.io.standard.nifti.Nifti1Dataset

dim_info - Variable in class mgui.io.standard.nifti.Nifti1Dataset

dim_x - Variable in class mgui.io.domestic.shapes.VolumeInputOptions

dim_y - Variable in class mgui.io.domestic.shapes.VolumeInputOptions

dim_z - Variable in class mgui.io.domestic.shapes.VolumeInputOptions

DIM5 - Variable in class mgui.io.standard.nifti.Nifti1Dataset

DIM6 - Variable in class mgui.io.standard.nifti.Nifti1Dataset

DIM7 - Variable in class mgui.io.standard.nifti.Nifti1Dataset

dinverse - Variable in class au.edu.unsw.cse.View3dInfo

directory - Variable in class mgui.interfaces.projects.ProjectDirectoryOptions

disconnect() - Method in class mgui.datasources.DataSource

Attempts to disconnect from the connected data source.

disconnect() - Method in class mgui.neuro.components.AbstractDendrite

disconnect() - Method in class mgui.neuro.components.compartments.CompartmentalDendrite

disconnect() - Method in interface mgui.neuro.components.Dendrite

disconnectAll() - Method in class mgui.neuro.components.AbstractAxon

disconnectSynapse(Synapse) - Method in class mgui.neuro.components.AbstractAxon

disconnectSynapse(Synapse) - Method in interface mgui.neuro.components.Axon

discrete_min - Variable in class mgui.image.util.WindowedColourModel

DiscreteColourMap - Class in mgui.interfaces.maps

Colour map for discrete 1-to-1 mappings (integers to colours).

DiscreteColourMap() - Constructor for class mgui.interfaces.maps.DiscreteColourMap

DiscreteColourMap(String) - Constructor for class mgui.interfaces.maps.DiscreteColourMap

DiscreteColourMap(NameMap) - Constructor for class mgui.interfaces.maps.DiscreteColourMap

DiscreteColourMapInDialogBox - Class in mgui.io.domestic.maps

DiscreteColourMapInDialogBox() - Constructor for class mgui.io.domestic.maps.DiscreteColourMapInDialogBox

DiscreteColourMapInDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.domestic.maps.DiscreteColourMapInDialogBox

DiscreteColourMapInOptions - Class in mgui.io.domestic.maps

Options for inputting a DiscreteColourMap.

DiscreteColourMapInOptions() - Constructor for class mgui.io.domestic.maps.DiscreteColourMapInOptions

DiscreteColourMapInOptions.Format - Enum in mgui.io.domestic.maps

DiscreteColourMapLayout - Class in mgui.interfaces.maps

Layout which displays a discrete colour map as a list of colour boxes, names, and optionally descriptions and indexes.

DiscreteColourMapLayout(DiscreteColourMap) - Constructor for class mgui.interfaces.maps.DiscreteColourMapLayout

DiscreteColourMapLayout(DiscreteColourMap, int, Font, Color) - Constructor for class mgui.interfaces.maps.DiscreteColourMapLayout

DiscreteColourMapLayout(DiscreteColourMap, Color) - Constructor for class mgui.interfaces.maps.DiscreteColourMapLayout

DiscreteColourMapLoader - Class in mgui.io.domestic.maps

Loads a discrete colour map from either delimited ASCII or XML.

DiscreteColourMapLoader() - Constructor for class mgui.io.domestic.maps.DiscreteColourMapLoader

DiscreteColourMapLoader(File) - Constructor for class mgui.io.domestic.maps.DiscreteColourMapLoader

DiscreteColourMapOutDialogBox - Class in mgui.io.domestic.maps

DiscreteColourMapOutDialogBox() - Constructor for class mgui.io.domestic.maps.DiscreteColourMapOutDialogBox

DiscreteColourMapOutDialogBox(JFrame, InterfaceIOPanel, InterfaceIOOptions) - Constructor for class mgui.io.domestic.maps.DiscreteColourMapOutDialogBox

DiscreteColourMapOutOptions - Class in mgui.io.domestic.maps

Options for outputting a DiscreteColourMap.

DiscreteColourMapOutOptions() - Constructor for class mgui.io.domestic.maps.DiscreteColourMapOutOptions

DiscreteColourMapOutOptions(DiscreteColourMap) - Constructor for class mgui.io.domestic.maps.DiscreteColourMapOutOptions

DiscreteColourMapTable - Class in mgui.interfaces.maps

Table to display and update a discrete colour map.

DiscreteColourMapTable() - Constructor for class mgui.interfaces.maps.DiscreteColourMapTable

DiscreteColourMapTable(DiscreteColourMap) - Constructor for class mgui.interfaces.maps.DiscreteColourMapTable

DiscreteColourMapTable.Editor - Class in mgui.interfaces.maps

DiscreteColourMapWriter - Class in mgui.io.domestic.maps

Writer for discrete colour maps.

DiscreteColourMapWriter() - Constructor for class mgui.io.domestic.maps.DiscreteColourMapWriter

display_panel - Variable in class mgui.interfaces.InterfaceWorkspace

display_panel - Variable in class mgui.interfaces.neuro.imaging.camino.CaminoProjectOptions

display_panel - Variable in class mgui.io.domestic.shapes.PointSet2DInputOptions

display_panel - Variable in class mgui.io.domestic.shapes.PointSet3DInputOptions

display_panel - Variable in class mgui.io.domestic.shapes.PolygonSet3DInputOptions

display_panel - Variable in class mgui.io.domestic.shapes.VectorSet3DInputOptions

DisplayListener - Interface in mgui.interfaces

displayListeners - Variable in class mgui.interfaces.InterfacePanel

displayNode(Point3d, Color) - Method in class mgui.interfaces.tools.shapes.ToolSelectNodesWithPolygon

displayNodes - Variable in class mgui.interfaces.tools.shapes.ToolSelectShape3D

displayPanel - Variable in class mgui.interfaces.shapes.selection.ShapeSelectionSet

displayPanel - Variable in class mgui.interfaces.shapes.ShapeModel3D

displayPanel - Variable in class mgui.interfaces.tools.InterfaceTool2DPanel

Deprecated.

displayPanel - Variable in class mgui.io.domestic.maps.DiscreteColourMapInOptions

displayPanel - Variable in class mgui.io.domestic.maps.NameMapInOptions

displayPanel - Variable in class mgui.io.domestic.maps.NameMapOutOptions

displayPanel - Variable in class mgui.io.domestic.shapes.PointSet3DDataInputOptions

displayPanel - Variable in class mgui.io.domestic.shapes.SurfaceDataOutputOptions

displayPanel - Variable in class mgui.io.domestic.shapes.SurfaceInputOptions

displayPanel - Variable in class mgui.io.domestic.variables.MatrixOutOptions

displayPanel - Variable in class mgui.io.foreign.caret.CaretMetricOptions

displayPanel - Variable in class mgui.morph.sections.InterfaceMorphPanel2

displayPanel - Variable in class mgui.morph.sections.InterfaceRadialRep

displayPanel - Variable in class mgui.morph.sections.InterfaceRadialRep2

displayPanelChanged(DisplayPanelEvent) - Method in class mgui.interfaces.datasources.InterfaceDatasourcePanel

displayPanelChanged(DisplayPanelEvent) - Method in interface mgui.interfaces.DisplayPanelListener

displayPanelChanged(DisplayPanelEvent) - Method in class mgui.interfaces.InterfaceTabbedDisplayPanel

displayPanelChanged(DisplayPanelEvent) - Method in class mgui.interfaces.shapes.ShapeModel3D

DisplayPanelEvent - Class in mgui.interfaces

DisplayPanelEvent(InterfaceDisplayPanel, DisplayPanelEvent.EventType) - Constructor for class mgui.interfaces.DisplayPanelEvent

DisplayPanelEvent.EventType - Enum in mgui.interfaces

DisplayPanelListener - Interface in mgui.interfaces

Interface to listen on changes to an InterfaceDisplayPanel.

displayPanelListeners - Variable in class mgui.interfaces.InterfaceDisplayPanel

displaySelectedNode(Point3d) - Method in class mgui.interfaces.tools.shapes.ToolQueryShape3D

displaySelectedNode(Point3d) - Method in class mgui.interfaces.tools.shapes.ToolSelectShape3D

displaySelectedNodes() - Method in class mgui.interfaces.tools.shapes.ToolSelectNodesWithPolygon

displaySelectedNodes(GeometryArray) - Method in class mgui.interfaces.tools.shapes.ToolQueryShape3D

displaySelectedNodes(GeometryArray) - Method in class mgui.interfaces.tools.shapes.ToolSelectShape3D

distance - Variable in class mgui.interfaces.maps.Camera3D

distance_to_closest - Variable in class mgui.interfaces.graphics.util.PickInfoShape2D

divFont - Variable in class mgui.interfaces.maps.ContinuousColourBar

divide(double) - Method in class mgui.numbers.MguiBoolean

divide(double) - Method in class mgui.numbers.MguiDouble

divide(double) - Method in class mgui.numbers.MguiFloat

divide(double) - Method in class mgui.numbers.MguiInteger

Divides this number by n.

divide(double) - Method in class mgui.numbers.MguiLong

Divides this number by n.

divide(double) - Method in interface mgui.numbers.MguiNumber

Update the value of this number by dividing by n.

divide(double) - Method in class mgui.numbers.MguiShort

Divides this number by n.

divide(MguiNumber) - Method in class mgui.numbers.MguiBoolean

divide(MguiNumber) - Method in class mgui.numbers.MguiDouble

divide(MguiNumber) - Method in class mgui.numbers.MguiFloat

divide(MguiNumber) - Method in class mgui.numbers.MguiInteger

divide(MguiNumber) - Method in class mgui.numbers.MguiLong

divide(MguiNumber) - Method in interface mgui.numbers.MguiNumber

Update the value of this number by dividing by n.

divide(MguiNumber) - Method in class mgui.numbers.MguiShort

Divide - mgui.geometry.volume.VolumeFunctions.Operation

DivideAndConquer - Class in au.edu.unsw.cse

DivideAndConquer(Point3dObject3d[]) - Constructor for class au.edu.unsw.cse.DivideAndConquer

divSize - Variable in class mgui.interfaces.maps.ContinuousColourBar

DLG_CMD_CANCEL - Static variable in class mgui.interfaces.InterfaceDialogBox

DLG_CMD_OK - Static variable in class mgui.interfaces.InterfaceDialogBox

do_it(InterfaceGraphic<?>, long) - Method in class mgui.interfaces.attributes.video.AttributeObjectVideoTask

do_it(InterfaceGraphic<?>, long) - Method in class mgui.interfaces.graphics.video.RotateView3DTask

do_it(InterfaceGraphic<?>, long) - Method in class mgui.interfaces.graphics.video.VideoTask

Perform this task, contingent on time.

do_it(InterfaceGraphic<?>, long) - Method in class mgui.interfaces.shapes.video.ChangeSectionVideoTask

do_it(InterfaceGraphic, long) - Method in class mgui.interfaces.graphics.video.SetView3DTask

doInBackground() - Method in class mgui.pipelines.PipelineLauncher

doInit(String) - Method in class mgui.interfaces.exec.MguiExec

doInit(String) - Method in interface mgui.interfaces.startup.InitListener

dolly(double) - Method in class au.edu.unsw.cse.View3dInfo

done() - Method in class mgui.pipelines.PipelineLauncher

doRoiOperation(Mesh3DInt, String, InterfaceProgressBar) - Method in class mgui.geometry.mesh.MeshEngine

Runs the ROI operation specified by method.

dot(Point3d) - Method in class au.edu.unsw.cse.Point3d

doTask(InterfaceOptions) - Method in class mgui.interfaces.tools.dialogs.DialogTool

Call this to run the task as a worker task.

doTaskBlocking(InterfaceOptions, InterfaceProgressBar) - Method in class mgui.interfaces.tools.dialogs.DialogTool

Runs this tool's task and blocks until it is complete.

doTaskBlocking(InterfaceOptions, InterfaceProgressBar) - Method in class mgui.interfaces.tools.shapes.ToolCreateMeshFromPolylines

doTaskBlocking(InterfaceOptions, InterfaceProgressBar) - Method in class mgui.interfaces.tools.shapes.ToolCutMeshWithPlane

doTaskBlocking(InterfaceOptions, InterfaceProgressBar) - Method in class mgui.interfaces.tools.shapes.ToolGetConvexHull2D

doTaskBlocking(InterfaceOptions, InterfaceProgressBar) - Method in class mgui.interfaces.tools.shapes.ToolGetMeshIntersectionPolylines

Double - mgui.io.domestic.shapes.ShapeDataInputOptions.Format

Double - mgui.io.domestic.shapes.SurfaceDataInputOptions.DataType

DOUBLE - Static variable in class mgui.datasources.DataTypes

doUpdate(DynamicModelEnvironment<?>, double) - Method in class mgui.models.updaters.LinearUpdater

doUpdate(DynamicModelEnvironment<?>, double) - Method in class mgui.models.updaters.SimpleEnvironmentUpdater

doUpdate(DynamicModelEnvironment, double) - Method in class mgui.models.updaters.PulseTrainUpdater

doUpdate(DynamicModelEnvironment, double) - Method in class mgui.neuro.updaters.PulseTrainUpdater

down_distance - Variable in class mgui.interfaces.shapes.util.ClipPlane

draw(Graphics2D, Point, float, float) - Method in class mgui.interfaces.shapes.util.Point2DShape

Draw this point, centered on origin

draw(Graphics2D, DrawingEngine) - Method in class mgui.interfaces.shapes.Ellipse2DInt

draw(Graphics2D, DrawingEngine) - Method in class mgui.interfaces.shapes.graphs.Graph2DInt

draw(Graphics2D, DrawingEngine) - Method in class mgui.interfaces.shapes.Image2DInt

draw(Graphics2D, DrawingEngine) - Method in class mgui.interfaces.shapes.Mesh2DInt

draw(Graphics2D, DrawingEngine) - Method in class mgui.interfaces.shapes.Point2DInt

draw(Graphics2D, DrawingEngine) - Method in class mgui.interfaces.shapes.PointSet2DInt

draw(Graphics2D, DrawingEngine) - Method in class mgui.interfaces.shapes.Polygon2DInt

draw(Graphics2D, DrawingEngine) - Method in class mgui.interfaces.shapes.Rect2DInt

draw(Graphics2D, DrawingEngine) - Method in class mgui.interfaces.shapes.SectionSet2DInt

draw(Graphics2D, DrawingEngine) - Method in class mgui.interfaces.shapes.Shape2DInt

draw(Graphics2D, DrawingEngine) - Method in class mgui.interfaces.shapes.Text2DInt

draw(Graphics2D, DrawingEngine) - Method in class mgui.interfaces.shapes.Vector2DInt

draw(Graphics2D, DrawingEngine) - Method in class mgui.interfaces.shapes.Volume2DInt

DRAW_CIRCLE_EXT - Static variable in class mgui.morph.sections.RadialRep2DInt

DRAW_CIRCLE_ONLY - Static variable in class mgui.morph.sections.RadialRep2DInt

DRAW_CIRCLE_RADII - Static variable in class mgui.morph.sections.RadialRep2DInt

DRAW_FAST - Static variable in class mgui.interfaces.graphics.util.DrawingEngine

DRAW_MAP - Static variable in class mgui.interfaces.graphics.util.DrawingEngine

DRAW_NORMAL - Static variable in class mgui.interfaces.graphics.util.DrawingEngine

DRAW_RADII_ONLY - Static variable in class mgui.morph.sections.RadialRep2DInt

DRAW_SCREEN - Static variable in class mgui.interfaces.graphics.util.DrawingEngine

DRAW_TRUE_EXT - Static variable in class mgui.morph.sections.RadialRep2DInt

DRAW_TRUE_RADII - Static variable in class mgui.morph.sections.RadialRep2DInt

draw2D(Graphics2D, DrawingEngine) - Method in class mgui.interfaces.graphics.Graphic2DGrid

draw2D(Shape2DInt, Graphics2D, DrawingEngine, Plane3D, float, float) - Method in class mgui.interfaces.shapes.Shape3DInt

drawAnchorLeft(Graphics2D, int, int, int, boolean) - Method in class mgui.interfaces.maps.ContinuousColourBar

drawAnchorUp(Graphics2D, int, int, int, boolean) - Method in class mgui.interfaces.maps.ContinuousColourBar

drawCircle2D(Graphics2D, Circle2D) - Method in class mgui.interfaces.graphics.util.DrawingEngine

Draws a Circle2D object

drawEllipse2D(Graphics2D, Ellipse2D) - Method in class mgui.interfaces.graphics.util.DrawingEngine

Draws a 2D ellipse.

drawEngine - Variable in class mgui.interfaces.graphics.InterfaceGraphic2D

drawEngine - Variable in class mgui.interfaces.shapes.Shape2DInt

drawEngine - Variable in class mgui.morph.sections.MorphEngine

drawEngine2D - Variable in class mgui.interfaces.shapes.Shape3DInt

drawGrid2D(Graphics2D, Graphic2DGrid, boolean) - Method in class mgui.interfaces.graphics.util.DrawingEngine

Draw a Graphic2DGrid object.

drawImage2D(Graphics2D, Rect2D, BufferedImage) - Method in class mgui.interfaces.graphics.util.DrawingEngine

Draws an image to fit a given rectangular bounds.

drawing_attributes - Variable in class mgui.interfaces.graphics.util.DrawingEngine

drawing_engine - Variable in class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer

drawing_transformer - Variable in class mgui.interfaces.shapes.graphs.Graph2DInt

DrawingEngine - Class in mgui.interfaces.graphics.util

Utility class to perform drawing of Shape2DInt shapes on a Graphics2D.

DrawingEngine() - Constructor for class mgui.interfaces.graphics.util.DrawingEngine

DrawingEngine(Map2D) - Constructor for class mgui.interfaces.graphics.util.DrawingEngine

DrawingTransformer(DrawingEngine) - Constructor for class mgui.interfaces.shapes.graphs.Graph2DInt.DrawingTransformer

drawLabels2D(Graphics2D, Rectangle2D, ArrayList<Point2f>, ArrayList<String>) - Method in class mgui.interfaces.graphics.util.DrawingEngine

Draws labels at the specified vertices, given the current attributes.

drawLabels2D(Graphics2D, Rectangle2D, ArrayList<Point2f>, ArrayList<String>, float) - Method in class mgui.interfaces.graphics.util.DrawingEngine

Draws labels at the specified vertices, given the current attributes.

drawLine(Point3d, Point3d) - Method in class au.edu.unsw.cse.View3d

Draw a 3D line.

drawLine2D(Graphics2D, LineSegment2D) - Method in class mgui.interfaces.graphics.util.DrawingEngine

Draws a 2D line segment.

drawLine2D(Graphics2D, LineSegment2D, boolean) - Method in class mgui.interfaces.graphics.util.DrawingEngine

Draws a 2D line segment.

drawMember(int, Graphics2D, DrawingEngine) - Method in class mgui.interfaces.shapes.ShapeSet3DInt

drawMember2D(int, Graphics2D, DrawingEngine) - Method in class mgui.interfaces.shapes.ShapeSet2DInt

drawMesh2D(Graphics2D, ArrayList<Point2f[]>, float) - Method in class mgui.interfaces.graphics.util.DrawingEngine

Draw a mesh intersection with the current line colour

drawMesh2D(Graphics2D, ArrayList<Point2f[]>, ArrayList<Colour>, float) - Method in class mgui.interfaces.graphics.util.DrawingEngine

Draw a mesh intersection, by painting the line according to colours, where colours is an n * 2 array specifying the colours for each edge's endpoints

drawMouseObjects() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D

drawMouseShapes() - Method in class mgui.interfaces.graphics.InterfaceGraphic2D

drawPoint2D(Graphics2D, Point2D, float) - Method in class mgui.interfaces.graphics.util.DrawingEngine

Draws a Point2D object.

drawPointSet2D(Graphics2D, PointSet2D, float, NodeShape, ArrayList<Colour>, float) - Method in class mgui.interfaces.graphics.util.DrawingEngine

Draws a PointSet3D with the specified parameters

drawPointSet2D(Graphics2D, PointSet2D, float, NodeShape, ArrayList<Colour>, float, ArrayList<String>) - Method in class mgui.interfaces.graphics.util.DrawingEngine

Draws a PointSet3D with the specified parameters

drawPolygon2D(Graphics2D, Polygon2D) - Method in class mgui.interfaces.graphics.util.DrawingEngine

Draws a Polygon2D object.

drawPolygon2DLabels(Graphics2D, Polygon2D, String) - Method in class mgui.interfaces.graphics.util.DrawingEngine

Draws labels on the vertices of a polygon object, offset to the right (East).

drawPolygon2DLine(Graphics2D, Polygon2D) - Method in class mgui.interfaces.graphics.util.DrawingEngine

drawPolygon2DNodes(Graphics2D, Polygon2D) - Method in class mgui.interfaces.graphics.util.DrawingEngine

DrawRadialNodeLabels(Graphics2D, RadialRep2D, boolean, String) - Method in class mgui.morph.sections.MorphDrawEngine

DrawRadialNodes(Graphics2D, RadialRep2D, boolean, int) - Method in class mgui.morph.sections.MorphDrawEngine

DrawRadialRep2D(Graphics2D, RadialRep2D) - Method in class mgui.morph.sections.MorphDrawEngine

DrawRadialRep2DCircleExt(Graphics2D, RadialRep2D) - Method in class mgui.morph.sections.MorphDrawEngine

DrawRadii(Graphics2D, RadialRep2D, boolean, boolean) - Method in class mgui.morph.sections.MorphDrawEngine

drawRadius2D(Graphics, Radius2D, Point2f) - Method in class mgui.interfaces.graphics.util.DrawingEngine

drawRadius2D(Graphics, Radius2D, Point2f, boolean) - Method in class mgui.interfaces.graphics.util.DrawingEngine

drawRadius2DNode(Graphics, Radius2D, Point2f, int) - Method in class mgui.interfaces.graphics.util.DrawingEngine

drawRect2D(Graphics2D, Rect2D) - Method in class mgui.interfaces.graphics.util.DrawingEngine

Draws and fills a rectangle.

drawSection(Graphics2D, DrawingEngine, int) - Method in class mgui.interfaces.shapes.SectionSet2DInt

drawSegmentData2D(Graphics2D, LineSegment2D, ArrayList<MguiNumber>, float, float, float, float) - Method in class mgui.interfaces.graphics.util.DrawingEngine

Draws data as a line plot beside segment.

drawsFocusBorderAroundIcon - Variable in class mgui.interfaces.attributes.tree.NonPrivateDefaultTreeCellRenderer

True if draws focus border around icon as well.

drawShape(Graphics2D, DrawingEngine) - Method in class mgui.interfaces.shapes.Line2DInt

drawShape(Graphics2D, DrawingEngine) - Method in class mgui.interfaces.shapes.ShapeSet3DInt

drawShape2D(Graphics2D, DrawingEngine) - Method in class mgui.interfaces.shapes.BoolPolygon2DInt

drawShape2D(Graphics2D, DrawingEngine) - Method in class mgui.interfaces.shapes.Circle2DInt

drawShape2D(Graphics2D, DrawingEngine) - Method in class mgui.interfaces.shapes.InterfaceShape

ABSTRACT METHODS

drawShape2D(Graphics2D, DrawingEngine) - Method in class mgui.interfaces.shapes.IntPolygon2DInt

drawShape2D(Graphics2D, DrawingEngine) - Method in class mgui.interfaces.shapes.LPolygon2DInt

drawShape2D(Graphics2D, DrawingEngine) - Method in class mgui.interfaces.shapes.Shape2DInt

drawShape2D(Graphics2D, DrawingEngine) - Method in class mgui.interfaces.shapes.Shape3DInt

drawShape2D(Graphics2D, DrawingEngine) - Method in class mgui.interfaces.shapes.ShapeSet2DInt

drawShape2D(Graphics2D, DrawingEngine) - Method in class mgui.interfaces.shapes.Volume2DInt

drawShape2D(Graphics2D, DrawingEngine) - Method in class mgui.morph.sections.RadialRep2DInt

drawShape2D(Graphics2D, DrawingEngine, Plane3D, float, float) - Method in class mgui.interfaces.shapes.Shape3DInt

Draw this shape as it is intersected by plane p, as well as its projection from distances <= spacing / 2, if required.

drawShape2D(Graphics2D, DrawingEngine, Plane3D, float, float, boolean) - Method in class mgui.interfaces.shapes.Shape3DInt

Draw this shape as it is intersected by plane p, as well as its projection from distances <= spacing / 2, if required.

drawShape2D(Shape2DInt) - Method in class mgui.interfaces.graphics.InterfaceGraphic2D

drawString(String, Point3d) - Method in class au.edu.unsw.cse.View3d

Place a string at a point in 3D space.

drawStringBelow(String, Point3d) - Method in class au.edu.unsw.cse.View3d

Place a string below a point in 3D space.

drawText2D(Graphics2D, Text2D) - Method in class mgui.interfaces.graphics.util.DrawingEngine

Draws a Text2D object.

drawVector2D(Graphics2D, Vector2D, Point2DShape, Point2DShape, float) - Method in class mgui.interfaces.graphics.util.DrawingEngine

driver - Variable in class mgui.interfaces.datasources.DataSourceListDialogPanel

driver - Variable in class mgui.interfaces.datasources.tinysql.TinySQLDialogPanel

dropDatabase(DataSource) - Method in class mgui.datasources.DataSourceDriver

Instructs the database server to drop the specified data source.

dropDataSource(DataSource) - Static method in class mgui.datasources.util.DataSourceFunctions

Drops the specified data source; i.e., deletes it entirely.

ds_datname - Variable in class mgui.io.standard.nifti.Nifti1Dataset

ds_hdrname - Variable in class mgui.io.standard.nifti.Nifti1Dataset

ds_is_nii - Variable in class mgui.io.standard.nifti.Nifti1Dataset

ds_item - Variable in class mgui.interfaces.datasources.DataTableModel

DT_ALL - Static variable in class mgui.io.standard.nifti.Nifti1Dataset

DT_BINARY - Static variable in class mgui.io.standard.nifti.Nifti1Dataset

DT_NONE - Static variable in class mgui.io.standard.nifti.Nifti1Dataset

DTFit - Class in mgui.neuro.imaging.camino.tasks

DTFit() - Constructor for class mgui.neuro.imaging.camino.tasks.DTFit

DuffSurfaceHeader - Class in mgui.io.foreign.duff

DuffSurfaceHeader(File) - Constructor for class mgui.io.foreign.duff.DuffSurfaceHeader

DuffSurfaceLoader - Class in mgui.io.foreign.duff

DuffSurfaceLoader() - Constructor for class mgui.io.foreign.duff.DuffSurfaceLoader

DuffSurfaceLoader(File) - Constructor for class mgui.io.foreign.duff.DuffSurfaceLoader

dump() - Method in class au.edu.unsw.cse.EdgeStack

duplicateNode(Node, boolean) - Method in class mgui.interfaces.shapes.Shape2DSectionNode

duplicateNode(Node, boolean) - Method in class mgui.interfaces.shapes.Shape3DSceneNode

duration - Variable in class mgui.interfaces.graphics.video.Video

dynamic_pipeline_listeners - Variable in class mgui.pipelines.PipelineLauncher

DynamicModel - Interface in mgui.models.dynamic

Base interface for a dynamic model; specifies methods for getting and setting model components, sensors, listeners, and environments.

DynamicModelComponent - Interface in mgui.models.dynamic

Interface which must be implemented by all components of a dynamic model.

DynamicModelEngine - Class in mgui.models.dynamic

The main engine class for coordinating a dynamic model.

DynamicModelEngine(double) - Constructor for class mgui.models.dynamic.DynamicModelEngine

DynamicModelEngine(double, DynamicModel) - Constructor for class mgui.models.dynamic.DynamicModelEngine

DynamicModelEnvironment<T extends MguiNumber> - Interface in mgui.models.dynamic

Interface for a dynamic model's environment.

DynamicModelEnvironmentEvent - Interface in mgui.models.dynamic

DynamicModelEnvironmentInputStream - Interface in mgui.models.dynamic

DynamicModelEnvironmentListener - Interface in mgui.models.dynamic

DynamicModelEnvironmentSensor - Interface in mgui.models.dynamic

Acts as a sensor for a model environment, which responds to state change events via the stimulate method.

DynamicModelEvent - Interface in mgui.models.dynamic

Represents a discrete causal event in a dynamic model.

DynamicModelException - Exception in mgui.models.dynamic

DynamicModelException - Exception in mgui.models.exceptions

DynamicModelException(String) - Constructor for exception mgui.models.dynamic.DynamicModelException

DynamicModelException(String) - Constructor for exception mgui.models.exceptions.DynamicModelException

DynamicModelListener - Interface in mgui.models.dynamic

DynamicModelODEComponent - Interface in mgui.models.dynamic.ode

Interface for components which solve ordinary differential equations (ODEs).

DynamicModelOutputEvent - Interface in mgui.models.dynamic

DynamicModelStatistics - Interface in mgui.models.dynamic.stats

DynamicModelUpdater - Interface in mgui.models.dynamic

Interface for a model that updates components as a function of a given timestep.

DynamicPipelineEvent - Class in mgui.pipelines

Represents an dynamic event on an executing pipeline; i.e., starting, terminating, updating

DynamicPipelineEvent(InterfacePipeline) - Constructor for class mgui.pipelines.DynamicPipelineEvent

DynamicPipelineListener - Interface in mgui.pipelines

Specifies a listener which handles dynamic changes to an executing pipeline.

dynDataType - Variable in class mgui.io.foreign.vol.VolumeInputOptions

dynFormat - Variable in class mgui.io.foreign.vol.VolumeInputOptions

dynInputType - Variable in class mgui.io.foreign.vol.VolumeInputOptions

dynX - Variable in class mgui.interfaces.shapes.dynamic.Volume4DInt

dynY - Variable in class mgui.interfaces.shapes.dynamic.Volume4DInt

dynZ - Variable in class mgui.interfaces.shapes.dynamic.Volume4DInt

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